ParallelCoarseSpaceMatVec.cc 8.19 KB
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//
// Software License for AMDiS
//
// Copyright (c) 2010 Dresden University of Technology 
// All rights reserved.
// Authors: Simon Vey, Thomas Witkowski et al.
//
// This file is part of AMDiS
//
// See also license.opensource.txt in the distribution.


#include "AMDiS.h"
#include "parallel/ParallelCoarseSpaceMatVec.h"
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#include "parallel/MatrixNnzStructure.h"
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namespace AMDiS {

  using namespace std;

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  ParallelCoarseSpaceMatVec::ParallelCoarseSpaceMatVec()
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    : rStartInterior(0),
      nGlobalOverallInterior(0),
      lastMeshNnz(0),
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      alwaysCreateNnzStructure(false)
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  {
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    Parameters::get("parallel->always create nnz structure", 
		    alwaysCreateNnzStructure);
  }


  void ParallelCoarseSpaceMatVec::init(ParallelDofMapping *iMap,
				       map<int, ParallelDofMapping*> cMap,
				       int sdLevel,
				       MPI::Intracomm mcLocal,
				       MPI::Intracomm mcGlobal,
				       MeshDistributor *meshDist)
  {
    FUNCNAME("ParallelCoarseSpaceMatVec:init()");
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    interiorMap = iMap;
    coarseSpaceMap = cMap;
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    subdomainLevel = sdLevel;
    mpiCommLocal = mcLocal;
    mpiCommGlobal = mcGlobal;
    meshDistributor = meshDist;
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    uniqueCoarseMap.clear();
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    if (coarseSpaceMap.size()) {
      std::set<ParallelDofMapping*> tmp;
      for (map<int, ParallelDofMapping*>::iterator it = coarseSpaceMap.begin();
	   it != coarseSpaceMap.end(); ++it) {
	if (tmp.count(it->second) == 0) {	  
	  tmp.insert(it->second);
	  uniqueCoarseMap.push_back(it->second);
	}
      }
    }

    int nCoarseMap = uniqueCoarseMap.size();
    mat.resize(nCoarseMap + 1);
    for (int i = 0; i < nCoarseMap + 1; i++)
      mat[i].resize(nCoarseMap + 1);

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    vecSol.resize(nCoarseMap + 1);
    vecRhs.resize(nCoarseMap + 1);

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    componentIthCoarseMap.resize(coarseSpaceMap.size());
    for (unsigned int i = 0; i < componentIthCoarseMap.size(); i++) {
      bool found = false;
      for (int j = 0; j < nCoarseMap; j++) {
	if (coarseSpaceMap[i] == uniqueCoarseMap[j]) {
	  componentIthCoarseMap[i] = j;
	  found = true;
	  break;
	}
      }
      
      TEST_EXIT_DBG(found)("Should not happen!\n");
    }
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  }


  void ParallelCoarseSpaceMatVec::create(Matrix<DOFMatrix*>& seqMat)
  {
    FUNCNAME("ParallelCoarseSpaceMatVec::create()");

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    updateSubdomainData();
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    // === If required, recompute non zero structure of the matrix. ===

    bool localMatrix = (coarseSpaceMap.size() && subdomainLevel == 0);
    if (checkMeshChange(seqMat, localMatrix)) {
      int nMat = uniqueCoarseMap.size() + 1;
      nnz.resize(nMat);
      for (int i = 0; i < nMat; i++) {
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	nnz[i].resize(nMat);
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	for (int j = 0; j < nMat; j++)
	  nnz[i][j].clear();
      }

      nnz[0][0].create(seqMat, mpiCommGlobal, *interiorMap,
		       (coarseSpaceMap.size() == 0 ? &(meshDistributor->getPeriodicMap()) : NULL),
		       meshDistributor->getElementObjectDb(),
		       localMatrix);

      for (int i = 0; i < nMat; i++) {
	for (int j = 0; j < nMat; j++) {
	  if (i == 0 && j == 0)
	    continue;

	  if (i == j) {
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	    nnz[i][j].create(seqMat, mpiCommGlobal, *(coarseSpaceMap[i - 1]), NULL,
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			     meshDistributor->getElementObjectDb());
	  } else {
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	    ParallelDofMapping &rowMap = 
	      (i == 0 ? *interiorMap : *(coarseSpaceMap[i - 1]));
	    ParallelDofMapping &colMap =
	      (j == 0 ? *interiorMap : *(coarseSpaceMap[j - 1]));

	    nnz[i][j].create(seqMat, mpiCommGlobal, rowMap, colMap, NULL,
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			     meshDistributor->getElementObjectDb());
	  }
	}
      }
    }


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    // === Create PETSc matrices and PETSc vectors with the computed  ===
    // === nnz data structure.                                        ===
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    int nRankRows = interiorMap->getRankDofs();
    int nOverallRows = interiorMap->getOverallDofs();
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    if (localMatrix) {
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      MatCreateSeqAIJ(mpiCommLocal, nRankRows, nRankRows,
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		      0, nnz[0][0].dnnz,
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		      &mat[0][0]);
      MatSetOption(mat[0][0], MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE);
    } else {
      MatCreateAIJ(mpiCommGlobal, nRankRows, nRankRows, 
		   nOverallRows, nOverallRows,
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		   0, nnz[0][0].dnnz, 0, nnz[0][0].onnz,
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		   &mat[0][0]);
      MatSetOption(mat[0][0], MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE);
    }

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    VecCreateMPI(mpiCommGlobal, nRankRows, nOverallRows, &vecSol[0]);
    VecCreateMPI(mpiCommGlobal, nRankRows, nOverallRows, &vecRhs[0]);
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    int nCoarseMap = uniqueCoarseMap.size();
    for (int i = 0; i < nCoarseMap; i++) {
      ParallelDofMapping* cMap = uniqueCoarseMap[i];
      
      int nRowsRankCoarse = cMap->getRankDofs();
      int nRowsOverallCoarse = cMap->getOverallDofs();
      
      MatCreateAIJ(mpiCommGlobal,
		   nRowsRankCoarse, nRowsRankCoarse,
		   nRowsOverallCoarse, nRowsOverallCoarse,
		   0, nnz[i + 1][i + 1].dnnz, 0, nnz[i + 1][i + 1].onnz,
		   &mat[i + 1][i + 1]);

      VecCreateMPI(mpiCommGlobal, nRowsRankCoarse, nRowsOverallCoarse, 
		   &vecSol[i + 1]);
      VecCreateMPI(mpiCommGlobal, nRowsRankCoarse, nRowsOverallCoarse, 
		   &vecRhs[i + 1]);
      
      for (int j = 0; j < nCoarseMap + 1; j++) {
	int nRowsRankMat = (j == 0 ? nRankRows : uniqueCoarseMap[j - 1]->getRankDofs());
	int nRowsOverallMat = (j == 0 ? nOverallRows : uniqueCoarseMap[j - 1]->getOverallDofs());
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	MatCreateAIJ(mpiCommGlobal,
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		     nRowsRankCoarse, nRowsRankMat,
		     nRowsOverallCoarse, nRowsOverallMat,
		     0, nnz[i + 1][j].dnnz, 0, nnz[i + 1][j].onnz,
		     &mat[i + 1][j]);	  
	
	MatCreateAIJ(mpiCommGlobal,
		     nRowsRankMat, nRowsRankCoarse,
		     nRowsOverallMat, nRowsOverallCoarse,
		     0, nnz[j][i + 1].dnnz, 0, nnz[j][i + 1].onnz,
		     &mat[j][i + 1]);
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      }
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    }    
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  }


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  void ParallelCoarseSpaceMatVec::matDestroy()
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  {
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    FUNCNAME("ParallelCoarseSpaceMatVec::matDestroy()");
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    int nMatrix = mat.size();
    for (int i = 0; i < nMatrix; i++)
      for (int j = 0; j < nMatrix; j++)
	MatDestroy(&mat[i][j]);
  }


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  void ParallelCoarseSpaceMatVec::vecDestroy()
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  {
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    FUNCNAME("ParallelCoarseSpaceMatVec::vecDestroy()");

    int nVec = vecSol.size();
    for (int i = 0; i < nVec; i++) {
      VecDestroy(&vecSol[i]);
      VecDestroy(&vecRhs[i]);
    }
  }


  void ParallelCoarseSpaceMatVec::matAssembly()
  {
    FUNCNAME("ParallelCoarseSpaceMatVec::matAssembly()");
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    int nMatrix = mat.size();
    for (int i = 0; i < nMatrix; i++) {
      for (int j = 0; j < nMatrix; j++) {
	MatAssemblyBegin(mat[i][j], MAT_FINAL_ASSEMBLY);
	MatAssemblyEnd(mat[i][j], MAT_FINAL_ASSEMBLY);  
      }
    }
  }

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  void ParallelCoarseSpaceMatVec::vecRhsAssembly()
  {
    FUNCNAME("ParallelCoarseSpaceMatVec::vecRhsAssembly()");

    int nVec = vecRhs.size();
    for (int i = 0; i < nVec; i++) {
      VecAssemblyBegin(vecRhs[i]);
      VecAssemblyEnd(vecRhs[i]);
    }
  }


  void ParallelCoarseSpaceMatVec::vecSolAssembly()
  {
    FUNCNAME("ParallelCoarseSpaceMatVec::vecSolAssembly()");

    int nVec = vecRhs.size();
    for (int i = 0; i < nVec; i++) {
      VecAssemblyBegin(vecSol[i]);
      VecAssemblyEnd(vecSol[i]);
    }
  }


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  bool ParallelCoarseSpaceMatVec::checkMeshChange(Matrix<DOFMatrix*> &seqMat,
						  bool localMatrix)
  {
    FUNCNAME("ParallelCoarseSpaceMatVec::checkMeshChange()");

    int recvAllValues = 0;
    int sendValue = 
      static_cast<int>(meshDistributor->getLastMeshChangeIndex() != lastMeshNnz);
    mpiCommGlobal.Allreduce(&sendValue, &recvAllValues, 1, MPI_INT, MPI_SUM);

    if (recvAllValues != 0 || alwaysCreateNnzStructure) {
      vector<const FiniteElemSpace*> feSpaces = getFeSpaces(seqMat);
      
      interiorMap->setComputeMatIndex(!localMatrix);
      interiorMap->update(feSpaces);

      lastMeshNnz = meshDistributor->getLastMeshChangeIndex();

      return true;
    }

    return false;
  }

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  void ParallelCoarseSpaceMatVec::updateSubdomainData()
  {
    FUNCNAME("ParallelCoarseSpaceMatVec::updateSubdomainData()");

    if (mpiCommLocal.Get_size() == 1) {
      rStartInterior = 0;
      nGlobalOverallInterior = interiorMap->getOverallDofs();
    } else {
      int groupRowsInterior = 0;
      if (mpiCommLocal.Get_rank() == 0)
	groupRowsInterior = interiorMap->getOverallDofs();

      mpi::getDofNumbering(mpiCommGlobal, groupRowsInterior,
			   rStartInterior, nGlobalOverallInterior);

      int tmp = 0;
      if (mpiCommLocal.Get_rank() == 0)
	tmp = rStartInterior;

      mpiCommLocal.Allreduce(&tmp, &rStartInterior, 1, MPI_INT, MPI_SUM);
    }
  }

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}