ElementObjectDatabase.h 18.7 KB
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// ============================================================================
// ==                                                                        ==
// == AMDiS - Adaptive multidimensional simulations                          ==
// ==                                                                        ==
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// ==  http://www.amdis-fem.org                                              ==
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// ==                                                                        ==
// ============================================================================
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//
// Software License for AMDiS
//
// Copyright (c) 2010 Dresden University of Technology 
// All rights reserved.
// Authors: Simon Vey, Thomas Witkowski et al.
//
// This file is part of AMDiS
//
// See also license.opensource.txt in the distribution.


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/** \file ElementObjectDatabase.h */
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#ifndef AMDIS_ELEMENT_OBJECT_DATABASE_H
#define AMDIS_ELEMENT_OBJECT_DATABASE_H
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#include <map>
#include <vector>
#include <boost/tuple/tuple.hpp>
#include <boost/tuple/tuple_comparison.hpp>
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#include <boost/container/flat_map.hpp>
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#include "AMDiS_fwd.h"
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#include "Containers.h"
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#include "Global.h"
#include "Boundary.h"
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#include "Serializer.h"
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#include "FiniteElemSpace.h"
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namespace AMDiS {

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  using namespace std;

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  using boost::container::flat_map;

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  /// Just to templatize the typedef.
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  template<typename T>
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  struct PerBoundMap {
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    typedef map<pair<T, T>, BoundaryType> type;
    typedef typename type::iterator iterator;
  };

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#pragma pack(push)
#pragma pack(1)
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  /// Defines one element object. This may be either a vertex, edge or face.
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  struct ElementObjectData {
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    ElementObjectData(int a = -1, int b = 0)
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      : elIndex(a),
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	ithObject(b)
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    {}
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    /// Index of the element this object is part of.
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    int elIndex;
    
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    /// Index of the object within the element.
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    char ithObject;
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    /// Write this element object to disk.
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    void serialize(ostream &out) const
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    {
      SerUtil::serialize(out, elIndex);
      SerUtil::serialize(out, ithObject);
    }

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    /// Read this element object from disk.
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    void deserialize(istream &in)
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    {
      SerUtil::deserialize(in, elIndex);
      SerUtil::deserialize(in, ithObject);
    }

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    /// Compare this element object with another one.
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    bool operator==(ElementObjectData& cmp) const
    {
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      return (elIndex == cmp.elIndex && ithObject == cmp.ithObject);
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    }

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    /// Define a strict order on element objects.
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    bool operator<(const ElementObjectData& rhs) const
    {
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      return (elIndex < rhs.elIndex || 
	      (elIndex == rhs.elIndex && ithObject < rhs.ithObject));
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    }
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  };
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#pragma pack(pop)
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  /** \brief
   * This class is a database of element objects. An element object is either a
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   * vertex, edge or the face of a specific element. This database is used to
   * store all objects of all elements of a mesh. The information is stored in a
   * way that makes it possible to identify all elements, which have a given
   * vertex, edge or face in common. If is is known which element is owned by 
   * which rank in parallel computations, it is thus possible to get all interior
   * boundaries on object level. This is required, because two elements may share
   * a common vertex without beging neighbours in the definition of AMDiS.
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   */
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  class ElementObjectDatabase {
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  public:
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    ElementObjectDatabase()
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      : feSpace(NULL),
	mesh(NULL),
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	iterGeoPos(CENTER),
	macroElementRankMap(NULL),
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	levelData(NULL)
    {}
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    void setFeSpace(const FiniteElemSpace *fe)
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    {
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      feSpace = fe;
      mesh = feSpace->getMesh();
    }
  
    Mesh* getMesh()
    {
      return mesh;
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    }

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    /*
     * \param[in]  macroElementRankMap   Maps to each macro element of the mesh
     *                                   the rank that owns this macro element.
     */
    void create(map<int, int>& macroElementRankMap,
		MeshLevelData& levelData);
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    void createMacroElementInfo(vector<MacroElement*> &mel);
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    /// Create for a filled object database the membership information for all
    /// element objects. An object is owned by a rank, if the rank has the
    /// heighest rank number of all ranks where the object is part of.
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    void updateRankData();
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    /// All data from the database is dropped. 
    void clear();

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    /** \brief
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     * Iterates over all elements for one geometrical index, i.e., over all
     * vertices, edges or faces in the mesh. The function returns true, if the
     * result is valid. Otherwise the iterator is at the end position.
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     *
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     * \param[in]  pos   Must be either VERTEX, EDGE or FACE and defines the
     *                   elements that should be traversed.
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     */
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    bool iterate(GeoIndex pos)
    {
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      // CENTER marks the variable "iterGeoPos" to be in an undefined state. I.e.,
      // there is no iteration that is actually running.

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      if (iterGeoPos == CENTER) {
	iterGeoPos = pos;
	switch (iterGeoPos) {
	case VERTEX:
	  vertexIter = vertexInRank.begin();
	  break;
	case EDGE:
	  edgeIter = edgeInRank.begin();
	  break;
	case FACE:
	  faceIter = faceInRank.begin();
	  break;
	default:
	  ERROR_EXIT("Not GeoIndex %d!\n", iterGeoPos);
	}
      } else {
	switch (iterGeoPos) {
	case VERTEX:
	  ++vertexIter;
	  break;
	case EDGE:
	  ++edgeIter;
	  break;
	case FACE:
	  ++faceIter;
	  break;
	default:
	  ERROR_EXIT("Not GeoIndex %d!\n", iterGeoPos);
	}
      }

      switch (iterGeoPos) {
      case VERTEX:
	if (vertexIter == vertexInRank.end()) {
	  iterGeoPos = CENTER;
	  return false;
	}
	break;
      case EDGE:
	if (edgeIter == edgeInRank.end()) {
	  iterGeoPos = CENTER;
	  return false;
	}
	break;
      case FACE:
	if (faceIter == faceInRank.end()) {
	  iterGeoPos = CENTER;
	  return false;
	}
	break;
      default:
	ERROR_EXIT("Should not happen!\n");	
      }

      return true;
    }


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    /// Returns the data of the current iterator position.
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    flat_map<int, ElementObjectData>& getIterateData()
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    {
      switch (iterGeoPos) {
      case VERTEX:
	return vertexIter->second;
	break;
      case EDGE:
	return edgeIter->second;
	break;
      case FACE:
	return faceIter->second;
	break;
      default:
	ERROR_EXIT("Should not happen!\n");

	// Will never be reached, just to avoid compiler warnings.
	return faceIter->second;
      }
    }

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    /// Returns the rank owner of the current iterator position.
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    int getIterateOwner(int level);
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    /// Returns the owner of a macro element vertex.
    int getOwner(DegreeOfFreedom vertex, int level);

    /// Returns the owner of a macro element edge.
    int getOwner(DofEdge edge, int level);
	
    /// Returns the owner of a macro element face.
    int getOwner(DofFace face, int level);

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    /// Returns the rank owner of the current iterator position.
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    int getIterateMaxLevel();
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    /// Checks if a given vertex DOF is in a given rank.
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    int isInRank(DegreeOfFreedom vertex, int rank)
    {
      return (vertexInRank[vertex].count(rank));
    }

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    /// Checks if a given edge is in a given rank.
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    int isInRank(DofEdge edge, int rank)
    {
      return (edgeInRank[edge].count(rank));
    }

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    /// Checks if a given face is in a given rank.
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    int isInRank(DofFace face, int rank)
    {
      return (faceInRank[face].count(rank));
    }


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    /// Returns a vector with all macro elements that have a given vertex DOF 
    /// in common.
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    vector<ElementObjectData>& getElements(DegreeOfFreedom vertex)
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    {
      return vertexElements[vertex];
    }

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    /// Returns a vector with all macro elements that have a given edge in common.
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    vector<ElementObjectData>& getElements(DofEdge edge)
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    {
      return edgeElements[edge];
    }

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    /// Returns a vector with all macro elements that have a given face in common.
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    vector<ElementObjectData>& getElements(DofFace face)
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    {
      return faceElements[face];
    }

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    /// Returns a vector with all macro elements that have a given vertex DOF 
    /// in common.
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    vector<ElementObjectData>& getElementsVertex(int elIndex, int ithVertex)
    {
      ElementObjectData elObj(elIndex, ithVertex);
      DegreeOfFreedom vertex = vertexLocalMap[elObj];
      return vertexElements[vertex];
    }
    
    /// Returns a vector with all macro elements that have a given edge in common.
    vector<ElementObjectData>& getElementsEdge(int elIndex, int ithEdge)
    {
      ElementObjectData elObj(elIndex, ithEdge);
      DofEdge edge = edgeLocalMap[elObj];
      return edgeElements[edge];
    }

    /// Returns a vector with all macro elements that have a given face in common.
    vector<ElementObjectData>& getElementsFace(int elIndex, int ithFace)
    {
      ElementObjectData elObj(elIndex, ithFace);
      DofFace face = faceLocalMap[elObj];
      return faceElements[face];
    }

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    /// Returns, for a given vertex, a map that maps from rank numbers to 
    /// element data objects, which identify on the rank the element which 
    /// contains this vertex. If more than one element in one subdomain contains
    /// the vertex, the element with the highest element index is given. If the
    /// vertex is not contained in a rank's subdomain, it will not be considered
    /// in this mapping.
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    flat_map<int, ElementObjectData>& getElementsInRank(DegreeOfFreedom vertex)
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    {
      return vertexInRank[vertex];
    }

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    /// Returns, for a given edge, a map that maps from rank numbers to 
    /// element data objects, which identify on the rank the element which 
    /// contains this edge. If more than one element in one subdomain contains
    /// the edge, the element with the highest element index is given. If the
    /// edge is not contained in a rank's subdomain, it will not be considered
    /// in this mapping.
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    flat_map<int, ElementObjectData>& getElementsInRank(DofEdge edge)
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    {
      return edgeInRank[edge];
    }

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    /// Returns, for a given face, a map that maps from rank numbers to 
    /// element data objects, which identify on the rank the element which 
    /// contains this face. If the face is not contained in a rank's subdomain, 
    /// it will not be considered in this mapping.
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    flat_map<int, ElementObjectData>& getElementsInRank(DofFace face)
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    {
      return faceInRank[face];
    }

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    /// Returns to an element object data the appropriate vertex DOF.
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    DegreeOfFreedom getVertexLocalMap(ElementObjectData &data)
    {
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      TEST_EXIT_DBG(vertexLocalMap.count(data))("Should not happen!\n");

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      return vertexLocalMap[data];
    }

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    /// Returns to an element object data the appropriate edge.
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    DofEdge getEdgeLocalMap(ElementObjectData &data)
    {
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      TEST_EXIT_DBG(edgeLocalMap.count(data))("Should not happen!\n");

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      return edgeLocalMap[data];
    }

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    /// Returns to an element object data the appropriate face.
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    DofFace getFaceLocalMap(ElementObjectData &data)
    {
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      TEST_EXIT_DBG(faceLocalMap.count(data))("Should not happen!\n");

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      return faceLocalMap[data];
    }

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    PerBoundMap<DegreeOfFreedom>::type& getPeriodicVertices()
    {
      return periodicVertices;
    }

    PerBoundMap<DofEdge>::type& getPeriodicEdges()
    {
      return periodicEdges;
    }

    PerBoundMap<DofFace>::type& getPeriodicFaces()
    {
      return periodicFaces;
    }

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    inline bool getEdgeReverseMode(ElementObjectData &obj0, 
				   ElementObjectData &obj1)
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    {
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      if (mesh->getDim() == 2)
	return true;

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      if (edgeReverseMode.empty())
	return false;
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      return static_cast<bool>(edgeReverseMode.count(make_pair(obj0, obj1)));
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    }

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    inline bool getFaceReverseMode(ElementObjectData &obj0, 
				   ElementObjectData &obj1)
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    {
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      if (faceReverseMode.empty())
	return false;
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      return static_cast<bool>(faceReverseMode.count(make_pair(obj0, obj1)));
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    }

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    /// Returns true if there is periodic data.
    bool hasPeriodicData()
    {
      return (periodicVertices.size() != 0);
    }

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    /// Returns true if the given boundary type is larger or equal to the smallest
    /// periodic boundary ID in mesh. See \ref smallestPeriodicBcType for more
    /// information.
    bool isValidPeriodicType(BoundaryType t) const
    {
      return (t >= smallestPeriodicBcType);
    }

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    inline Element* getElementPtr(int index)
    {
      return macroElIndexMap[index];
    }

    inline int getElementType(int index)
    {
      return macroElIndexTypeMap[index];
    }

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    void setData(map<int, int> &rankMap,
		MeshLevelData& ld)
    {
      macroElementRankMap = &rankMap;
      levelData = &ld;
    }

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    /// Write the element database to disk.
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    void serialize(ostream &out);
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    /// Read the element database from disk.
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    void deserialize(istream &in);
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    /// Returns the estimated memory usage of an object of this class.
    unsigned long calculateMemoryUsage();

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  protected:
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    /** \brief
     * Adds an element to the object database. If the element is part of a
     * periodic boundary, all information about subobjects of the element on
     * this boundary are collected.
     *
     * \param[in]  elInfo    ElInfo object of the element. 
     */
    void addElement(ElInfo *elInfo);

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    /// Adds the i-th DOF vertex of an element to the object database.
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    void addVertex(Element *el, int ith);
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    /// Adds the i-th edge of an element to the object database.
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    void addEdge(Element *el, int ith);
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    /// Adds the i-th face of an element to the object database.
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    void addFace(Element *el, int ith);
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    /// Creates final data of the periodic boundaries. Must be called after all
    /// elements of the mesh are added to the object database. Then this
    /// functions search for indirectly connected vertices in periodic 
    /// boundaries. This is only the case, if there are more than one boundary
    /// conditions. Then, e.g., in 2D, all edges of a square are iterectly
    /// connected. In 3D, if the macro mesh is a box, all eight vertex nodes and
    /// always four of the 12 edges are indirectly connected.
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    void createPeriodicData();
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    /// Creates on all boundaries the reverse mode flag.
    void createReverseModeData();

    BoundaryType getNewBoundaryType();

    BoundaryType provideConnectedPeriodicBoundary(BoundaryType b0, 
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						  BoundaryType b1);
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    /// Some auxiliary function to write the element object database to disk.
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    void serialize(ostream &out, vector<ElementObjectData>& elVec);
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    /// Some auxiliary function to read the element object database from disk.
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    void deserialize(istream &in, vector<ElementObjectData>& elVec);
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    /// Some auxiliary function to write the element object database to disk.
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    void serialize(ostream &out, flat_map<int, ElementObjectData>& data);
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    /// Some auxiliary function to read the element object database from disk.
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    void deserialize(istream &in, flat_map<int, ElementObjectData>& data);
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    int getOwner(vector<ElementObjectData>& objData, int level);
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  private:
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    const FiniteElemSpace* feSpace;

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    /// The mesh that is used to store all its element information in 
    /// the database.
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    Mesh *mesh;
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    /// Maps to each vertex DOF all element objects that represent this vertex.
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    flat_map<DegreeOfFreedom, vector<ElementObjectData> > vertexElements;
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    /// Maps to each edge all element objects that represent this edge.
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    flat_map<DofEdge, vector<ElementObjectData> > edgeElements;
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    /// Maps to each face all element objects that represent this edge.
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    flat_map<DofFace, vector<ElementObjectData> > faceElements;

    
    /// Temporary object to speed up creation of \ref vertexElements
    map<DegreeOfFreedom, vector<ElementObjectData> > tmpVertexElements;

    /// Temporary object to speed up creation of \ref edgeElements
    map<DofEdge, vector<ElementObjectData> > tmpEdgeElements;

    /// Temporary object to speed up creation of \ref faceElements
    map<DofFace, vector<ElementObjectData> > tmpFaceElements;

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    /// Maps to an element object the corresponding vertex DOF.
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    flat_map<ElementObjectData, DegreeOfFreedom> vertexLocalMap;
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    /// Maps to an element object the corresponding edge.
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    flat_map<ElementObjectData, DofEdge> edgeLocalMap;
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    /// Maps to an element object the corresponding face.
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    flat_map<ElementObjectData, DofFace> faceLocalMap;
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    /// Defines to each vertex DOF a map that maps to each rank number the element
    /// objects that have this vertex DOF in common.
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    flat_map<DegreeOfFreedom, flat_map<int, ElementObjectData> > vertexInRank;
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    /// Defines to each edge a map that maps to each rank number the element 
    /// objects that have this edge in common.
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    flat_map<DofEdge, flat_map<int, ElementObjectData> > edgeInRank;
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    /// Defines to each face a map that maps to each rank number the element 
    /// objects that have this face in common.
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    flat_map<DofFace, flat_map<int, ElementObjectData> > faceInRank;
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    /// Vertex iterator to iterate over \ref vertexInRank
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    flat_map<DegreeOfFreedom, flat_map<int, ElementObjectData> >::iterator vertexIter;
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    /// Edge iterator to iterate over \ref edgeInRank
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    flat_map<DofEdge, flat_map<int, ElementObjectData> >::iterator edgeIter;
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    /// Face iterator to iterate over \ref faceInRank
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    flat_map<DofFace, flat_map<int, ElementObjectData> >::iterator faceIter;
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    /// Defines the geometrical iteration index of the iterators. I.e., the value
    /// is either VERTEX, EDGE or FACE and the corresponding element objects are
    /// traversed. The value CENTER is used to define a not defined states of the
    /// iterators, i.e., if no iteration is running.
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    GeoIndex iterGeoPos;
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    map<pair<BoundaryType, BoundaryType>, BoundaryType> bConnMap;
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    /// The following three data structures store periodic DOFs, edges and faces.
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    PerBoundMap<DegreeOfFreedom>::type periodicVertices;
    PerBoundMap<DofEdge>::type periodicEdges;
    PerBoundMap<DofFace>::type periodicFaces;
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    /// Defines the smallest boudary ID for periodic boundary conditions. This is
    /// required to distinguish between "real" periodic boundaries and periodic
    /// boundary IDs that are set by the parallel algorithm for indirectly 
    /// connected boundaries.
    BoundaryType smallestPeriodicBcType;

    /// Stores to each vertex all its periodic associations.
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    map<DegreeOfFreedom, std::set<BoundaryType> > periodicDofAssoc;
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    /// Stores to each edge all its periodic associations.
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    map<DofEdge, std::set<DofEdge> > periodicEdgeAssoc;

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    /// Stores all interior edge boundaries which have reverse mode enabled.
    std::set<pair<ElementObjectData, ElementObjectData> > edgeReverseMode;
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    /// Stores all interior face boundaries which have reverse mode enabled.
    std::set<pair<ElementObjectData, ElementObjectData> > faceReverseMode;
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    map<int, int> *macroElementRankMap;

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    /// Maps to each macro element index a pointer to the corresponding element.
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    flat_map<int, Element*> macroElIndexMap;
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    /// Maps to each macro element index the type of this element.
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    flat_map<int, int> macroElIndexTypeMap;
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    MeshLevelData* levelData;
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  };

}

#endif