BddcMlSolver.cc 11.7 KB
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//
// Software License for AMDiS
//
// Copyright (c) 2010 Dresden University of Technology 
// All rights reserved.
// Authors: Simon Vey, Thomas Witkowski et al.
//
// This file is part of AMDiS
//
// See also license.opensource.txt in the distribution.

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#ifdef HAVE_BDDC_ML

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extern "C" {
#include <bddcml_interface_c.h>
}

#include "parallel/BddcMlSolver.h"
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#include "parallel/MpiHelper.h"
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namespace AMDiS {

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  void BddcMlSolver::fillPetscMatrix(Matrix<DOFMatrix*> *m)
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  {
    FUNCNAME("BddcMlSolver::fillPetscMatrix()");
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    mat = m;
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  }


  void BddcMlSolver::fillPetscRhs(SystemVector *vec)
  {
    FUNCNAME("BddcMlSolver::fillPetscRhs()");
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    rhsVec = vec;
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  }


  void BddcMlSolver::solvePetscMatrix(SystemVector &vec, AdaptInfo *adaptInfo)
  {
    FUNCNAME("BddcMlSolver::solvePetscMatrix()");
    
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    TEST_EXIT(rhsVec)("Should not happen!\n");
    TEST_EXIT(mat)("Should not happen!\n");

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    int nComponents = vec.getSize();
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    const FiniteElemSpace *feSpace = vec.getFeSpace(0);
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    Mesh *mesh = feSpace->getMesh();
    

    // === First, create a continous leaf element index on each subdomain ===

    std::set<int> leafElIndex;
    TraverseStack stack;
    ElInfo *elInfo = stack.traverseFirst(mesh, -1, Mesh::CALL_LEAF_EL);
    while (elInfo) {
      leafElIndex.insert(elInfo->getElement()->getIndex());
      elInfo = stack.traverseNext(elInfo);
    }

    map<int, int> mapElIndex;
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    int nLeafEls = 0;
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    for (std::set<int>::iterator it = leafElIndex.begin();
	 it != leafElIndex.end(); ++it)
      mapElIndex[*it] = nLeafEls++;



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    int nLevel = 2;
    int nSubdomains[nLevel]; 
    nSubdomains[0] = meshDistributor->getMpiSize();
    nSubdomains[1] = 1;

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    int nSubPerProc = 1;
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    MPI_Fint c2f = MPI_Comm_c2f(meshDistributor->getMpiComm());
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    int verboseLevel = 2;
    int numbase = 0;

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//     MSG("call to \"bddcml_init\" with the following arguments:\n");
//     MSG("  %d, [%d, %d], %d, %d, %d, %d, %d\n", nLevel, nSubdomains[0], nSubdomains[1], nLevel, nSubPerProc, c2f, verboseLevel, numbase);

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    bddcml_init(&nLevel, nSubdomains, &nLevel, &nSubPerProc, 
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		&c2f, &verboseLevel, &numbase);

    // global number of elements
    int nelem = mesh->getNumberOfLeaves();
    mpi::globalAdd(nelem);

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    MSG("nelem = %d\n", nelem);

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    // global number of nodes
    int nnod = meshDistributor->getNumberOverallDofs(feSpace);
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    MSG("nnod = %d\n", nnod);
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    // global number of dofs
    int ndof = nnod * nComponents;

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    MSG("ndof = %d\n", ndof);

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    // space dimenstion
    int ndim = 2;

    // mesh dimension
    int meshdim = 2;

    // global indes of subdomain
    int isub = meshDistributor->getMpiRank();

    // local number of elements
    int nelems = nLeafEls;

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    MSG("nelems = %d\n", nelems);

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    // local number of nodes
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    int nnods = feSpace->getAdmin()->getUsedSize();
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    // local number of dofs
    int ndofs = nnods * nComponents;

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    MSG("local nnods %d     ndofs %d\n", nnods, ndofs);

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    // Length of array inet
    int linet = nelems * 3;
    
    // Local array with indices of nodes on each element
    int inet[linet];
    elInfo = stack.traverseFirst(mesh, -1, Mesh::CALL_LEAF_EL);
    while (elInfo) {
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      TEST_EXIT_DBG(mapElIndex.count(elInfo->getElement()->getIndex()))
	("Should not happen!\n");

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      int localElIndex = mapElIndex[elInfo->getElement()->getIndex()];
      for (int i = 0; i < 3; i++)
	inet[localElIndex * 3 + i] = elInfo->getElement()->getDof(i, 0);
      elInfo = stack.traverseNext(elInfo);
    }


    // local array of number of nodes per element
    int nnet[nelems];
    for (int i = 0; i < nelems; i++)
      nnet[i] = 3;

    // local array with number of DOFs per node.
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    int nndf[nnods];
    for (int i = 0; i < nnods; i++)
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      nndf[i] = nComponents;

    // array of indices of subdomain nodes in global numbering
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    int isngn[nnods];
    for (int i = 0; i < nnods; i++)
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      isngn[i] = meshDistributor->mapDofToGlobal(feSpace, i);
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    // array of indices of subdomain variables in global numbering
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    int isvgvn[ndofs];
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    for (int j = 0; j < nnods; j++)
      for (int i = 0; i < nComponents; i++)
	isvgvn[j * nComponents + i] = 
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	  meshDistributor->mapDofToGlobal(feSpace, j) * nComponents + i;
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    // array of indices of subdomain elements in global numbering
    int isegn[nelems];
    int rStartEl, nOverallEl;
    mpi::getDofNumbering(meshDistributor->getMpiComm(),
			 nelems, rStartEl, nOverallEl);
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    MSG("rStartEl = %d\n", rStartEl);
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    for (int i = 0; i < nelems; i++)
      isegn[i] = rStartEl + i;



    int lxyz1 = nnods;
    int lxyz2 = 2;
    // local array with coordinates of nodes
    double xyz[lxyz1 * lxyz2];
    
    {
      DOFVector<WorldVector<double> > coordDofs(feSpace, "tmp");
      mesh->getDofIndexCoords(feSpace, coordDofs);

      for (int i = 0; i < lxyz2; i++)
	for (int j = 0; j < nnods; j++)
	  xyz[i * nnods + j] = coordDofs[j][i];
    }

    // local array of indices denoting dirichlet boundary data
    int ifix[ndofs];
    for (int i = 0; i < ndofs; i++)
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      ifix[i] = 0;
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    // local array of values for dirichlet boundary data
    double fixv[ndofs];
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    for (int i = 0; i < ndofs; i++)
      fixv[i] = 0.0;
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    // local rhs data
    double rhs[ndofs];
    for (int i = 0; i < nComponents; i++) {
      DOFVector<double>& dofvec = *(rhsVec->getDOFVector(i));
      for (int j = 0; j < ndofs; j++)
	rhs[j * nComponents + i] = dofvec[j];
    }

    // Completenes of the rhs vector on subdomains
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    int is_rhs_complete = 0;
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    // Local array with initial solution guess
    double sol[ndofs];
    for (int i = 0; i < ndofs; i++)
      sol[i] = 0.0;

    // matrix type (set here to unsymmetric)
    int matrixtype = 0;
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    // Non zero structure of matrix
    vector<int> i_sparse;
    vector<int> j_sparse;
    vector<double> a_sparse;

    for (int i = 0; i < nComponents; i++)
      for (int j = 0; j < nComponents; j++)
	if ((*mat)[i][j])
	  addDofMatrix((*mat)[i][j], 
		       i_sparse, j_sparse, a_sparse, nComponents, i, j);
	

    // Number of non-zero entries in matrix
    int la = i_sparse.size();
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    //    MSG("LOCAL LA = %d\n", la);
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    // Matrix is assembled
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    int is_assembled_int = 0;
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    /*
    string tmp="";

    MSG("call to \"bddcml_upload_subdomain_data\" with the following arguments (each in one line):\n");
    MSG("  nelem = %d\n", nelem);
    MSG("  nnod = %d\n", nnod);
    MSG("  ndof = %d\n", ndof);
    MSG("  ndim = %d\n", ndim);
    MSG("  meshdim = %d\n", meshdim);
    MSG("  isub = %d\n", isub);
    MSG("  nelems = %d\n", nelems);
    MSG("  nnods = %d\n", nnods);
    MSG("  ndofs = %d\n", ndofs);
    MSG("  inet = [%d, %d, %d, %d, %d, %d]\n", inet[0], inet[1], inet[2], inet[3], inet[4], inet[5]);
    MSG("  linet = %d\n", linet);
    MSG("  nnet = [%d, %d]\n", nnet[0], nnet[1]);
    MSG("  lnnet = %d\n", nelems);
    MSG("  nndf = [%d, %d, %d, %d]\n", nndf[0], nndf[1], nndf[2], nndf[3]);
    MSG("  lnndf = %d\n", nnods);
    MSG("  isngn = [%d, %d, %d, %d]\n", isngn[0], isngn[1], isngn[2], isngn[3]);
    MSG("  lisngn = %d\n", nnods);
    MSG("  isvgvn = [%d, %d, %d, %d]\n", isvgvn[0], isvgvn[1], isvgvn[2], isvgvn[3]);
    MSG("  lisvgvn = %d\n", nnods);
    MSG("  isegn = [%d, %d]\n", isegn[0], isegn[1]);
    MSG("  lisegn = %d\n", nelems);
    MSG("  xyz = [%f, %f, %f, %f, %f, %f, %f, %f]\n", xyz[0], xyz[1], xyz[2], xyz[3], xyz[4], xyz[5], xyz[6], xyz[7]);
    MSG("  lxyz1 = %d\n", lxyz1);
    MSG("  lxyz2 = %d\n", lxyz2);
    MSG("  ifix = [%d, %d, %d, %d]\n", ifix[0], ifix[1], ifix[2], ifix[3]);
    MSG("  lifix = %d\n", ndofs);
    MSG("  fixv = [%f, %f, %f, %f]\n", fixv[0], fixv[1], fixv[2], fixv[3]);
    MSG("  lfixv = %d\n", ndofs);
    MSG("  rhs = [%f, %f, %f, %f]\n", rhs[0], rhs[1], rhs[2], rhs[3]);
    MSG("  lrhs = %d\n", ndofs);
    MSG("  is_rhs_complete = %d\n", is_rhs_complete);
    MSG("  sol = [%f, %f, %f, %f]\n", sol[0], sol[1], sol[2], sol[3]);
    MSG("  lsol = %d\n", ndofs);
    MSG("  matrixtype = %d\n", matrixtype);
    
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    MSG("  ispare = [%d, %d, %d, %d, %d, %d, %d, %d, %d, %d]\n", i_sparse[0], i_sparse[1], i_sparse[2], i_sparse[3], i_sparse[4], i_sparse[5], i_sparse[6], i_sparse[7], i_sparse[8], i_sparse[9]);
    MSG("  jspare = [%d, %d, %d, %d, %d, %d, %d, %d, %d, %d]\n", j_sparse[0], j_sparse[1], j_sparse[2], j_sparse[3], j_sparse[4], j_sparse[5], j_sparse[6], j_sparse[7], j_sparse[8], j_sparse[9]);
    MSG("  a_spare = [%f, %f, %f, %f, %f, %f, %f, %f, %f, %f]\n", a_sparse[0], a_sparse[1], a_sparse[2], a_sparse[3], a_sparse[4], a_sparse[5], a_sparse[6], a_sparse[7], a_sparse[8], a_sparse[9]);
    MSG("  la = %d\n", la);
    MSG("  is_assembled_int = %d\n", is_assembled_int);
    */
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    bddcml_upload_subdomain_data(&nelem,
				 &nnod,
				 &ndof,
				 &ndim,
				 &meshdim,
				 &isub,
				 &nelems,
				 &nnods,
				 &ndofs,
				 inet,
				 &linet,
				 nnet,
				 &nelems,
				 nndf,
				 &nnods,
				 isngn,
				 &nnods,
				 isvgvn,
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				 &ndofs,
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				 isegn,
				 &nelems,
				 xyz,
				 &lxyz1,
				 &lxyz2,
				 ifix,
				 &ndofs,
				 fixv,
				 &ndofs,
				 rhs,
				 &ndofs,
				 &is_rhs_complete,
				 sol,
				 &ndofs,
				 &matrixtype,
				 &(i_sparse[0]),
				 &(j_sparse[0]),
				 &(a_sparse[0]),
				 &la,
				 &is_assembled_int);


    int use_defaults_int = 1;
    int parallel_division_int = 1;
    int use_arithmetic_int = 1;
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    int use_adaptive_int = 0;
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    // MSG("call to \"bddcml_setup_preconditioner\" with the following arguments (each in one line):\n");
//     MSG("  %d\n", matrixtype);
//     MSG("  %d\n", use_defaults_int);
//     MSG("  %d\n", parallel_division_int);
//     MSG("  %d\n", use_arithmetic_int);
//     MSG("  %d\n", use_adaptive_int);

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    bddcml_setup_preconditioner(&matrixtype, 
				&use_defaults_int,
				&parallel_division_int,
				&use_arithmetic_int,
				&use_adaptive_int);

    int method = 1;
    double tol = 1.e-6;
    int maxit = 1000;
    int ndecrmax = 30;
    int num_iter = 0;
    int converged_reason = 0;
    double condition_number = 0.0;

    bddcml_solve(&c2f, 
		 &method, 
		 &tol,
		 &maxit,
		 &ndecrmax,
		 &num_iter,
		 &converged_reason,
		 &condition_number);

    MSG("BDDCML converged reason: %d within %d iterations \n", 
	converged_reason, num_iter);
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    bddcml_finalize();
  }


  void BddcMlSolver::destroyMatrixData()
  {
    FUNCNAME("BddcMlSolver::destroyMatrixData()");
  }

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  void BddcMlSolver::addDofMatrix(DOFMatrix* dmat, 
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				  vector<int>& i_sparse, 
				  vector<int>& j_sparse,
				  vector<double>& a_sparse,
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				  int nComponents,
				  int ithRowComponent,
				  int ithColComponent)
  {
    FUNCNAME("BddcMlSolver::addDofMatrix()");

    TEST_EXIT(dmat)("Should not happen!\n");

    const FiniteElemSpace *feSpace = dmat->getFeSpace();

    using mtl::tag::row; using mtl::tag::nz; using mtl::begin; using mtl::end;
    namespace traits = mtl::traits;
    typedef DOFMatrix::base_matrix_type Matrix;

    traits::col<Matrix>::type col(dmat->getBaseMatrix());
    traits::const_value<Matrix>::type value(dmat->getBaseMatrix());

    typedef traits::range_generator<row, Matrix>::type cursor_type;
    typedef traits::range_generator<nz, cursor_type>::type icursor_type;

    for (cursor_type cursor = begin<row>(dmat->getBaseMatrix()), 
	   cend = end<row>(dmat->getBaseMatrix()); cursor != cend; ++cursor) {
      int rowIndex = 
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	meshDistributor->mapDofToGlobal(feSpace, *cursor) * nComponents +
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	ithRowComponent;

      for (icursor_type icursor = begin<nz>(cursor), icend = end<nz>(cursor); 
	   icursor != icend; ++icursor) {	
	int colIndex = 
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	  meshDistributor->mapDofToGlobal(feSpace, col(*icursor)) * nComponents +
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	  ithColComponent;

	double val = value(*icursor);
	
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// 	i_sparse.push_back(rowIndex);
// 	j_sparse.push_back(colIndex);
	i_sparse.push_back(*cursor * nComponents + ithRowComponent);
	j_sparse.push_back(col(*icursor) * nComponents + ithColComponent);
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	a_sparse.push_back(val);
      }
    }

  }

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}

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#endif