Skip to content

GitLab

Commit 0487c588 authored by Thomas Witkowski's avatar Thomas Witkowski
Browse files

Rewritten sequential part of mesh adaption in parallel mesh repartitioning code.

parent efddd93d
Expand all Show whitespace changes
Inline Side-by-side
AMDiS/Makefile.in
View file @ 0487c588
......@@ -140,7 +140,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
PETSC_DIR = @PETSC_DIR@
RANLIB = @RANLIB@
SED = @SED@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
......
AMDiS/aclocal.m4
View file @ 0487c588
......@@ -1578,27 +1578,10 @@ linux*)
# before this can be enabled.
hardcode_into_libs=yes
# find out which ABI we are using
libsuff=
case "$host_cpu" in
x86_64*|s390x*|powerpc64*)
echo '[#]line __oline__ "configure"' > conftest.$ac_ext
if AC_TRY_EVAL(ac_compile); then
case `/usr/bin/file conftest.$ac_objext` in
*64-bit*)
libsuff=64
sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
;;
esac
fi
rm -rf conftest*
;;
esac
# Append ld.so.conf contents to the search path
if test -f /etc/ld.so.conf; then
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
fi
# We used to test for /lib/ld.so.1 and disable shared libraries on
......@@ -4305,9 +4288,6 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1)
# Is the compiler the GNU C compiler?
with_gcc=$_LT_AC_TAGVAR(GCC, $1)
gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
gcc_ver=\`gcc -dumpversion\`
# An ERE matcher.
EGREP=$lt_EGREP
......@@ -4441,11 +4421,11 @@ striplib=$lt_striplib
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1)
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1)
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -4457,7 +4437,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1)
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1)
# Method to check whether dependent libraries are shared objects.
deplibs_check_method=$lt_deplibs_check_method
......@@ -4537,7 +4517,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1)
# Compile-time system search path for libraries
sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
......@@ -6373,7 +6353,6 @@ do
done
done
done
IFS=$as_save_IFS
lt_ac_max=0
lt_ac_count=0
# Add /usr/xpg4/bin/sed as it is typically found on Solaris
......@@ -6406,7 +6385,6 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do
done
])
SED=$lt_cv_path_SED
AC_SUBST([SED])
AC_MSG_RESULT([$SED])
])
......
AMDiS/bin/Makefile.in
View file @ 0487c588
......@@ -414,7 +414,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
PETSC_DIR = @PETSC_DIR@
RANLIB = @RANLIB@
SED = @SED@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
......
AMDiS/configure
View file @ 0487c588
This diff is collapsed.
AMDiS/libtool
View file @ 0487c588
......@@ -30,10 +30,10 @@
# the same distribution terms that you use for the rest of that program.
# A sed program that does not truncate output.
SED="/bin/sed"
SED="/usr/bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
Xsed="/bin/sed -e 1s/^X//"
Xsed="/usr/bin/sed -e 1s/^X//"
# The HP-UX ksh and POSIX shell print the target directory to stdout
# if CDPATH is set.
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host NWRW15:
# Libtool was configured on host p2q072:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -66,12 +66,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-pc-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-pc-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -82,25 +82,22 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="gcc"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -174,7 +171,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -232,11 +229,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
predep_objects=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
postdep_objects=""
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -248,7 +245,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
compiler_lib_search_path=""
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -328,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -6763,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host NWRW15:
# Libtool was configured on host p2q072:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -6785,12 +6782,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-pc-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-pc-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -6801,25 +6798,22 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="g++"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -6893,7 +6887,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -6948,11 +6942,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -6960,11 +6954,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=`echo "-L/u/witkowski/local/lib -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7044,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -7071,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host NWRW15:
# Libtool was configured on host p2q072:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7093,12 +7087,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-pc-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-pc-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -7109,7 +7103,7 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
......@@ -7118,16 +7112,13 @@ LTCFLAGS="-g -O2"
CC="g77"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
with_gcc=
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -7259,11 +7250,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
predep_objects=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
postdep_objects=""
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -7275,7 +7266,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
compiler_lib_search_path=""
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7355,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/3.4.6/ /u/witkowski/local/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/3.3.5/ /fastfs/wir/local/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......
AMDiS/src/ElInfo.h
View file @ 0487c588
......@@ -72,13 +72,20 @@ namespace AMDiS {
macroElement = rhs.macroElement;
fillFlag = rhs.fillFlag;
level = rhs.level;
elType = rhs.elType;
iChild = rhs.iChild;
coord = rhs.coord;
boundary = rhs.boundary;
projection = rhs.projection;
oppCoord = rhs.oppCoord;
neighbour = rhs.neighbour;
neighbourCoord = rhs.neighbourCoord;
oppVertex = rhs.oppVertex;
det = rhs.det;
grdLambda = rhs.grdLambda;
parametric = rhs.parametric;
dimOfWorld = rhs.dimOfWorld;
return *this;
}
......
AMDiS/src/ElInfo2d.cc
View file @ 0487c588
......@@ -285,8 +285,6 @@ namespace AMDiS {
FUNCNAME("ElInfo::fillElInfo()");
Element *elem = elInfoOld->element;
Element *nb;
Flag fill_flag = elInfoOld->fillFlag;
TEST_EXIT_DBG(elem->getFirstChild())("no children?\n");
......@@ -372,7 +370,7 @@ namespace AMDiS {
// Calculation of the neighbour 0, its oppCoords and the
// cooresponding oppVertex.
nb = elInfoOld->neighbour[2];
Element *nb = elInfoOld->neighbour[2];
if (nb) {
TEST(elInfoOld->oppVertex[2] == 2)("invalid neighbour\n");
TEST_EXIT_DBG(nb->getFirstChild())("missing first child?\n");
......@@ -461,7 +459,7 @@ namespace AMDiS {
// Calculation of the neighbour 1, its oppCoords and the
// cooresponding oppVertex.
nb = elInfoOld->neighbour[2];
Element *nb = elInfoOld->neighbour[2];
if (nb) {
TEST(elInfoOld->oppVertex[2] == 2)("invalid neighbour\n");
TEST((nb = nb->getFirstChild()))("missing child?\n");
......
AMDiS/src/Element.h
View file @ 0487c588
......@@ -106,7 +106,7 @@ namespace AMDiS {
/// Returns \ref child[i], i=0,1
inline Element* getChild(int i) const
{
TEST_EXIT_DBG(i==0 || i==1)("i must be 0 or 1\n");
TEST_EXIT_DBG(i == 0 || i == 1)("i must be 0 or 1\n");
return child[i];
}
......
AMDiS/src/Mesh.cc
View file @ 0487c588
......@@ -645,6 +645,28 @@ namespace AMDiS {
}
void Mesh::fillElInfo(ElInfo *elInfo, Element *el, Flag fillFlag)
{
FUNCNAME("Mesh::fillElInfo()");
TEST_EXIT_DBG(elInfo != NULL)("No valide elInfo pointer given!\n");
TEST_EXIT_DBG(el != NULL)("No valid el pointer given!\n");
TraverseStack stack;
ElInfo *traverseElInfo =
stack.traverseFirst(this, -1, Mesh::CALL_EVERY_EL_PREORDER | fillFlag);
while (traverseElInfo) {
if (traverseElInfo->getElement() == el) {
*elInfo = *traverseElInfo;
break;
}
traverseElInfo = stack.traverseNext(traverseElInfo);
}
}
bool Mesh::findElInfoAtPoint(const WorldVector<double>& xy,
ElInfo *el_info,
DimVec<double>& bary,
......
AMDiS/src/Mesh.h
View file @ 0487c588
......@@ -374,6 +374,19 @@ namespace AMDiS {
/// Creates a new ElInfo dependent of \ref dim of the mesh
ElInfo* createNewElInfo();
/** \brief
* Fills an ElInfo-object with the information data for a given element. Note
* that this function is quite slow, since it has to traverse the whole mesh to
* find the element.
*
* \param[out] elInfo Must be a pointer to a valide object. The data of
* the element is stored here.
* \param[in] el Pointer to the element the function has to search for.
* \param[in] fillFlag Flags for mesh traverse. Defines the data that should
* be created for the element.
*/
void fillElInfo(ElInfo *elInfo, Element *el, Flag fillFlag);
/// Frees DOFs at the given position pointed by dof
void freeDOF(DegreeOfFreedom* dof, GeoIndex position);
......
AMDiS/src/RefinementManager.cc
View file @ 0487c588
......@@ -36,6 +36,7 @@ namespace AMDiS {
return refineMesh(aMesh);
}
Flag RefinementManager::refineMesh(Mesh *aMesh)
{
FUNCNAME("RefinementManager::refineMesh()");
......
AMDiS/src/RefinementManager2d.cc
View file @ 0487c588
......@@ -146,6 +146,7 @@ namespace AMDiS {
}
}
void RefinementManager2d::setNewCoords()
{
TraverseStack stack;
......@@ -300,6 +301,7 @@ namespace AMDiS {
}
}
int RefinementManager2d::getRefinePatch(ElInfo **el_info,
DegreeOfFreedom *edge[2],
int dir, RCNeighbourList* refineList,
......
AMDiS/src/Traverse.cc
View file @ 0487c588
......@@ -103,11 +103,9 @@ namespace AMDiS {
elinfo_stack[i] = traverse_mesh->createNewElInfo();
}
if (stack_size > 0) {
for (int i = stack_size; i < new_stack_size; i++) {
if (stack_size > 0)
for (int i = stack_size; i < new_stack_size; i++)
elinfo_stack[i]->setFillFlag(elinfo_stack[0]->getFillFlag());
}
}
info_stack.resize(new_stack_size);
save_elinfo_stack.resize(new_stack_size, NULL);
......@@ -651,7 +649,8 @@ namespace AMDiS {
elinfo = parametric->addParametricInfo(elinfo);
elinfo->fillDetGrdLambda();
}
return(elinfo);
return elinfo;
}
......
AMDiS/src/Traverse.h
View file @ 0487c588
......@@ -68,10 +68,10 @@ namespace AMDiS {
/// Destructor
~TraverseStack()
{
for (int i = 0; i < static_cast<int>(elinfo_stack.size()); i++)
for (unsigned int i = 0; i < elinfo_stack.size(); i++)
delete elinfo_stack[i];
for (int i = 0; i < static_cast<int>(save_elinfo_stack.size()); i++)
for (unsigned int i = 0; i < save_elinfo_stack.size(); i++)
delete save_elinfo_stack[i];
}
......
AMDiS/src/parallel/ParallelDomainBase.cc
View file @ 0487c588
......@@ -450,11 +450,10 @@ namespace AMDiS {
if (elCode.getCode() != recvCodes[i].getCode()) {
TEST_EXIT_DBG(refineManager)("Refinement manager is not set correctly!\n");
int refCounter = 0;
bool b = fitElementToMeshCode(recvCodes[i],
boundIt->rankObj.el,
boundIt->rankObj.ithObj,
boundIt->rankObj.elType, refCounter);
boundIt->rankObj.elType);
if (b)
meshFitTogether = false;
......@@ -471,10 +470,9 @@ namespace AMDiS {
bool ParallelDomainBase::fitElementToMeshCode(MeshStructure &code,
Element *el,
int ithSide,
int elType,
int &refCounter)
int elType)
{
FUNCNAME("fitElementToMeshCode()");
FUNCNAME("ParallelDomainBase::fitElementToMeshCode()");
if (code.empty())
return false;
......@@ -484,58 +482,89 @@ namespace AMDiS {
TEST_EXIT_DBG(s1 != -1 || s2 != -1)("This should not happen!\n");
if (s1 != -1 && s2 != -1)
return fitElementToMeshCode2(code, el, ithSide, elType, refCounter);
bool meshChanged = false;
ElInfo *elInfo = el->getMesh()->createNewElInfo();
el->getMesh()->fillElInfo(elInfo, el, Mesh::FILL_NEIGH | Mesh::FILL_BOUND);
if (s1 != -1 && s2 != -1) {
meshChanged = fitElementToMeshCode2(code, el, elInfo, ithSide, elType);
delete elInfo;
return meshChanged;
}
if (el->isLeaf()) {
if (code.getNumElements() == 1 && code.isLeafElement())
if (code.getNumElements() == 1 && code.isLeafElement()) {
delete elInfo;
return false;
}
el->setMark(1);
refineManager->refineElement(el->getMesh(), el);
refCounter++;
refineManager->refineFunction(elInfo);
meshChanged = true;
}
if (s1 != -1)