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Commit 173ee421 authored by Thomas Witkowski's avatar Thomas Witkowski
Browse files

Code revision in mesh refinement and coarsening.

parent c417d753
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AMDiS/libtool
View file @ 173ee421
......@@ -30,10 +30,10 @@
# the same distribution terms that you use for the rest of that program.
# A sed program that does not truncate output.
SED="/bin/sed"
SED="/usr/bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
Xsed="/bin/sed -e 1s/^X//"
Xsed="/usr/bin/sed -e 1s/^X//"
# The HP-UX ksh and POSIX shell print the target directory to stdout
# if CDPATH is set.
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host NWRW15:
# Libtool was configured on host p1q024:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -66,12 +66,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-pc-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-pc-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -82,13 +82,13 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="gcc"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# Is the compiler the GNU C compiler?
with_gcc=yes
......@@ -97,7 +97,7 @@ with_gcc=yes
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -171,7 +171,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -325,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=" /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/i386-redhat-linux/4.1.2/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/"
sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/mysql /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -6760,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host NWRW15:
# Libtool was configured on host p1q024:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -6782,12 +6782,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-pc-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-pc-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -6798,13 +6798,13 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="g++"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicxx"
# Is the compiler the GNU C compiler?
with_gcc=yes
......@@ -6813,7 +6813,7 @@ with_gcc=yes
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -6887,7 +6887,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -6942,11 +6942,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects="/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o"
predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects="/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o"
postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -6954,11 +6954,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path="-L/u/witkowski/local/lib -L/u/witkowski/local/intel/mkl/10.0.1.014/lib/32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.."
compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7038,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=" /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/i386-redhat-linux/4.1.2/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/"
sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/mysql /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -7065,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host NWRW15:
# Libtool was configured on host p1q024:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7087,12 +7087,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-pc-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-pc-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -7103,7 +7103,7 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
......@@ -7112,13 +7112,13 @@ LTCFLAGS="-g -O2"
CC="g77"
# Is the compiler the GNU C compiler?
with_gcc=yes
with_gcc=
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -7346,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=" /u/witkowski/local/lib/i386-redhat-linux/3.4.6/ /u/witkowski/local/lib/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/i386-redhat-linux/3.4.6/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/"
sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/3.3.5/ /fastfs/wir/local/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/mysql /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......
AMDiS/src/CoarseningManager.h
View file @ 173ee421
......@@ -72,16 +72,8 @@ namespace AMDiS {
protected:
/** \brief
* If the mesh is coarsened by non recurisive traversal, this method
* spezifies
* how one element of the mesh is coarsened. The method can be overriden
* by sub classes, if used.
*/
virtual int coarsenFunction(ElInfo *)
{
return 0;
}
/// Defines the way how one element of the mesh is coarsen.
virtual void coarsenFunction(ElInfo *) {}
/** \brief
* Propagate coarsening information over the whole hierarchy
......
AMDiS/src/CoarseningManager1d.h
View file @ 173ee421
......@@ -50,11 +50,10 @@ namespace AMDiS {
protected:
/// Not needed in this sub class
int coarsenFunction(ElInfo *)
void coarsenFunction(ElInfo *)
{
FUNCNAME("CoarseningManager1d::coarsenFunction");
ERROR_EXIT("not used for dim = 1");
return 0;
}
/// Needed instead of coarsenFunction in 1d.
......
AMDiS/src/CoarseningManager2d.cc
View file @ 173ee421
......@@ -73,14 +73,14 @@ namespace AMDiS {
/* of data (if possible) and finally coarsen the patch elements */
/****************************************************************************/
void CoarseningManager2d::coarsenPatch(RCNeighbourList *coarsenList,
void CoarseningManager2d::coarsenPatch(RCNeighbourList &coarsenList,
int n_neigh,
int bound)
{
Triangle *el =
dynamic_cast<Triangle*>(const_cast<Element*>(coarsenList->getElement(0)));
dynamic_cast<Triangle*>(const_cast<Element*>(coarsenList.getElement(0)));
Triangle *neigh =
dynamic_cast<Triangle*>(const_cast<Element*>(coarsenList->getElement(1)));
dynamic_cast<Triangle*>(const_cast<Element*>(coarsenList.getElement(1)));
DegreeOfFreedom *dof[3];
dof[0] = const_cast<int*>(el->getChild(0)->getDof(2));
......@@ -103,7 +103,7 @@ namespace AMDiS {
}
if (mesh->getNumberOfDofs(EDGE) || mesh->getNumberOfDofs(CENTER))
coarsenList->addDOFParents(n_neigh);
coarsenList.addDOFParents(n_neigh);
// restrict dof vectors to the parents on the patch
......@@ -112,7 +112,7 @@ namespace AMDiS {
DOFAdmin* admin = const_cast<DOFAdmin*>(&mesh->getDofAdmin(iadmin));
for (std::list<DOFIndexedBase*>::iterator it = admin->beginDOFIndexed();
it != admin->endDOFIndexed(); ++it)
(*it)->coarseRestrict(*coarsenList, n_neigh);
(*it)->coarseRestrict(coarsenList, n_neigh);
}
coarsenTriangle(el);
......@@ -133,7 +133,7 @@ namespace AMDiS {
}
int CoarseningManager2d::coarsenFunction(ElInfo *el_info)
void CoarseningManager2d::coarsenFunction(ElInfo *el_info)
{
Triangle *el = dynamic_cast<Triangle*>(const_cast<Element*>(el_info->getElement()));
DegreeOfFreedom *edge[2];
......@@ -143,20 +143,20 @@ namespace AMDiS {
coarse_list.setCoarseningManager(this);
if (el->getMark() >= 0)
return 0; // el must not be coarsend, return
return; // el must not be coarsend, return
if (!(el->getChild(0)))
return 0; // single leaves don't get coarsened
return; // single leaves don't get coarsened
if (el->getChild(0)->getMark() >= 0 || el->getChild(1)->getMark() >= 0) {
// one of the children must not be coarsend; return :(
el->setMark(0);
return 0;
return;
}
if (!el->getChild(0)->isLeaf() || !el->getChild(1)->isLeaf()) {
// one of the children is not a leaf element; try again later on
doMore = true;
return 0;
return;
}
// give the refinement edge the right orientation
......@@ -186,15 +186,12 @@ namespace AMDiS {
if (coarse_list.doCoarsePatch(n_neigh)) {
int n_neigh_periodic;
DegreeOfFreedom *next_edge[2];
RCNeighbourList *periodicList;
RCNeighbourList periodicList;
while (edge[0] != NULL) {
periodicList = coarse_list.periodicSplit(edge,
next_edge,
&n_neigh,
&n_neigh_periodic);
TEST_EXIT_DBG(periodicList)("periodicList = NULL\n");
coarse_list.periodicSplit(edge, next_edge,
&n_neigh, &n_neigh_periodic,
periodicList);
coarsenPatch(periodicList, n_neigh_periodic, bound);
......@@ -202,8 +199,6 @@ namespace AMDiS {
edge[1] = next_edge[1];
}
}
return 0;
}
}
AMDiS/src/CoarseningManager2d.h
View file @ 173ee421
......@@ -44,8 +44,8 @@ namespace AMDiS {
virtual ~CoarseningManager2d() {}
protected:
/// Implements CoarseningManager::coarsenFunction
virtual int coarsenFunction(ElInfo *el_info);
/// Implements \ref CoarseningManager::coarsenFunction
void coarsenFunction(ElInfo *el_info);
/** \brief
* Coarsens a single Triangle of the coarsening patch. DOFs
......@@ -59,7 +59,7 @@ namespace AMDiS {
* First rebuild the DOFs on the parents then do restriction
* of data (if possible) and finally coarsen the patch elements
*/
void coarsenPatch(RCNeighbourList *coarsenList, int n_neigh, int bound);
void coarsenPatch(RCNeighbourList &coarsenList, int n_neigh, int bound);
};
......
AMDiS/src/CoarseningManager3d.cc
View file @ 173ee421
......@@ -22,39 +22,39 @@
namespace AMDiS {
int CoarseningManager3d::coarsenFunction(ElInfo *el_info)
void CoarseningManager3d::coarsenFunction(ElInfo *el_info)
{
Tetrahedron *el =
dynamic_cast<Tetrahedron*>(const_cast<Element*>(el_info->getElement()));
DegreeOfFreedom *edge[2];
int n_neigh, bound = 0;
ElInfo *elinfo = el_info;
RCNeighbourList *coarsenList;
if (el->getMark() >= 0)
return 0; // el must not be coarsend, return :-(
return; // el must not be coarsend, return :-(
if (el->isLeaf())
return 0; // single leaves don't get coarsened
return; // single leaves don't get coarsened
if (el->getChild(0)->getMark() >= 0 || el->getChild(1)->getMark() >= 0) {
if (el->getChild(0)->getMark() >= 0 || el->getChild(1)->getMark() >= 0) {
// one of the children must not be coarsend; return :-(
el->setMark(0);
return 0;
return;
}
if (!(el->getChild(0)->isLeaf()) || !(el->getChild(1)->isLeaf())) {
// one of the children is not a leaf element; try again later on
doMore = true;
return 0;
return;
}
DegreeOfFreedom *edge[2];
int n_neigh, bound = 0;
ElInfo *elinfo = el_info;
/****************************************************************************/
/* get a list for storing all elements at the coarsening edge and fill it */
/****************************************************************************/
coarsenList = new RCNeighbourList(mesh->getMaxEdgeNeigh());
coarsenList->setCoarseningManager(this);
RCNeighbourList coarsenList(mesh->getMaxEdgeNeigh());
coarsenList.setCoarseningManager(this);
/****************************************************************************/
/* give the refinement edge the right orientation */
......@@ -68,17 +68,17 @@ namespace AMDiS {
edge[0] = const_cast<int*>(el->getDof(1));
}
coarsenList->setElement(0, el, true);
coarsenList.setElement(0, el, true);
n_neigh = 1;
coarsenList->setOppVertex(0,0,0);
coarsenList->setElType(0, el_info->getType());
coarsenList.setOppVertex(0, 0, 0);
coarsenList.setElType(0, el_info->getType());
bound = false;
if (getCoarsenPatch(elinfo, edge, 0, coarsenList, &n_neigh)) {
getCoarsenPatch(elinfo, edge, 1, coarsenList, &n_neigh);
bound = true;
}
coarsenList->getNeighOnPatch(n_neigh, bound);
coarsenList.fillNeighbourRelations(n_neigh, bound);
/****************************************************************************/
/* check wether we can coarsen the patch or not */
......@@ -88,18 +88,15 @@ namespace AMDiS {
// === check for periodic boundary ==========================================
// ==========================================================================
if (coarsenList->doCoarsePatch(n_neigh)) {
if (coarsenList.doCoarsePatch(n_neigh)) {
int n_neigh_periodic;
DegreeOfFreedom *next_edge[2];
RCNeighbourList *periodicList;
RCNeighbourList periodicList;
while (edge[0] != NULL) {
periodicList = coarsenList->periodicSplit(edge,
next_edge,
&n_neigh,
&n_neigh_periodic);
TEST_EXIT_DBG(periodicList)("periodicList = NULL\n");
coarsenList.periodicSplit(edge, next_edge,
&n_neigh, &n_neigh_periodic,
periodicList);
coarsenPatch(periodicList, n_neigh_periodic, bound);
......@@ -107,10 +104,6 @@ namespace AMDiS {
edge[1] = next_edge[1];
}
}
delete coarsenList;
return 0;
}
/*****************************************************************************/
......@@ -120,18 +113,18 @@ namespace AMDiS {
/* is part of the domains boundary */
/*****************************************************************************/
void CoarseningManager3d::coarsenTetrahedron(RCNeighbourList *coarsenList,
void CoarseningManager3d::coarsenTetrahedron(RCNeighbourList &coarsenList,
int index)
{
Tetrahedron *el =
dynamic_cast<Tetrahedron*>(const_cast<Element*>(coarsenList->getElement(index)));
dynamic_cast<Tetrahedron*>(const_cast<Element*>(coarsenList.getElement(index)));
Tetrahedron *child[2];
Tetrahedron *neigh;
int dir, el_type, i, node, opp_v;
child[0] = dynamic_cast<Tetrahedron*>(const_cast<Element*>(el->getChild(0)));
child[1] = dynamic_cast<Tetrahedron*>(const_cast<Element*>(el->getChild(1)));
el_type = coarsenList->getType(index);
el_type = coarsenList.getType(index);
/****************************************************************************/
/* Information about patch neighbours is still valid! But edge and face */
......@@ -140,10 +133,10 @@ namespace AMDiS {
for (dir = 0; dir < 2; dir++) {
neigh =
dynamic_cast<Tetrahedron*>(const_cast<Element*>(coarsenList->getNeighbourElement(index, dir)));
opp_v = coarsenList->getOppVertex(index, dir);
dynamic_cast<Tetrahedron*>(const_cast<Element*>(coarsenList.getNeighbourElement(index, dir)));
opp_v = coarsenList.getOppVertex(index, dir);
if (!neigh || neigh->isLeaf()) {
if (!neigh || neigh->isLeaf()) {
/****************************************************************************/
/* boundary face or neigh has been coarsend: free the dof's in the face */
/****************************************************************************/
......@@ -215,7 +208,7 @@ namespace AMDiS {
bool CoarseningManager3d::getCoarsenPatch(ElInfo *el_info,
DegreeOfFreedom *edge[2],
int dir,
RCNeighbourList *coarsenList,
RCNeighbourList &coarsenList,
int *n_neigh)
{
FUNCNAME("CoarseningManager3d::getCoarsenPatch");
......@@ -231,13 +224,14 @@ namespace AMDiS {
{0,1}};
el = dynamic_cast<Tetrahedron*>(const_cast<Element*>(el_info->getElement()));
neigh = dynamic_cast<Tetrahedron*>(const_cast<Element*>(el_info->getNeighbour(3 - dir)));
neigh =
dynamic_cast<Tetrahedron*>(const_cast<Element*>(el_info->getNeighbour(3 - dir)));
if (neigh == NULL)
return true;
opp_v = el_info->getOppVertex(3-dir);
opp_v = el_info->getOppVertex(3 - dir);
neigh_info = stack->traverseNeighbour3d(el_info, 3-dir);
neigh_info = stack->traverseNeighbour3d(el_info, 3 - dir);
TEST_EXIT_DBG(neigh == neigh_info->getElement())
("neigh %d and neigh_info->el %d are not identical\n",
neigh->getIndex(), neigh_info->getElement()->getIndex());
......@@ -245,9 +239,9 @@ namespace AMDiS {
/* we have to go back to the starting element via opp_v values */
/* correct information is produce by get_neigh_on_patch() */
/****************************************************************************/
coarsenList->setOppVertex(*n_neigh, 0, opp_v);
coarsenList->setElement(*n_neigh, neigh);
coarsenList->setElType(*n_neigh, neigh_info->getType());
coarsenList.setOppVertex(*n_neigh, 0, opp_v);
coarsenList.setElement(*n_neigh, neigh);
coarsenList.setElType(*n_neigh, neigh_info->getType());
int n_vertices = mesh->getGeo(VERTEX);
......@@ -273,7 +267,7 @@ namespace AMDiS {
neigh->getDof(1,0), neigh->getDof(2,0), neigh->getDof(3,0));
}
edge_no = Tetrahedron::edgeOfDofs[j][k];
coarsenList->setCoarsePatch(*n_neigh, edge_no == 0);
coarsenList.setCoarsePatch(*n_neigh, edge_no == 0);
/****************************************************************************/
/* get the direction of the next neighbour */
......@@ -287,7 +281,8 @@ namespace AMDiS {
++*n_neigh;
opp_v = neigh_info->getOppVertex(i);
neigh = dynamic_cast<Tetrahedron*>(const_cast<Element*>(neigh_info->getNeighbour(i)));
neigh =
dynamic_cast<Tetrahedron*>(const_cast<Element*>(neigh_info->getNeighbour(i)));
if (neigh) {
neigh_info = stack->traverseNeighbour3d(neigh_info, i);
TEST_EXIT_DBG(neigh == neigh_info->getElement())
......@@ -297,9 +292,9 @@ namespace AMDiS {
/* we have to go back to the starting element via opp_v values */
/* correct information is produce by get_neigh_on_patch() */
/****************************************************************************/
coarsenList->setOppVertex(*n_neigh, 0, opp_v);
coarsenList->setElement(*n_neigh, neigh);
coarsenList->setElType(*n_neigh, neigh_info->getType());
coarsenList.setOppVertex(*n_neigh, 0, opp_v);
coarsenList.setElement(*n_neigh, neigh);
coarsenList.setElType(*n_neigh, neigh_info->getType());
} else {
break;
}
......@@ -313,13 +308,13 @@ namespace AMDiS {
/****************************************************************************/
i = *n_neigh - 1;
opp_v = coarsenList->getOppVertex(i, 0);
opp_v = coarsenList.getOppVertex(i, 0);
do {
TEST_EXIT_DBG(neigh_info->getNeighbour(opp_v) && i > 0)
("while looping back domains boundary was reached or i == 0\n");
opp_v = coarsenList->getOppVertex(i--, 0);
opp_v = coarsenList.getOppVertex(i--, 0);
neigh_info = stack->traverseNeighbour3d(neigh_info, opp_v);
} while(neigh_info->getElement() != el);
} while (neigh_info->getElement() != el);
return true;
}
......@@ -329,14 +324,14 @@ namespace AMDiS {
/* of data (if possible) and finally coarsen the patch elements */
/****************************************************************************/
void CoarseningManager3d::coarsenPatch(RCNeighbourList *coarsenList,
void CoarseningManager3d::coarsenPatch(RCNeighbourList &coarsenList,
int n_neigh,
int bound)