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Commit 2d6d2384 authored by Thomas Witkowski's avatar Thomas Witkowski
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Some performance issues, part II.

parent 9fc53052
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Showing with 53 additions and 51 deletions
AMDiS/src/parallel/ElementObjectDatabase.cc
View file @ 2d6d2384
......@@ -179,6 +179,7 @@ namespace AMDiS {
}
}
void ElementObjectDatabase::addVertex(Element *el, int ith)
{
DegreeOfFreedom vertex = el->getDof(ith, 0);
......@@ -796,7 +797,7 @@ namespace AMDiS {
nSize = vertexLocalMap.size();
SerUtil::serialize(out, nSize);
for (map<ElementObjectData, DegreeOfFreedom>::iterator it = vertexLocalMap.begin();
for (boost::container::flat_map<ElementObjectData, DegreeOfFreedom>::iterator it = vertexLocalMap.begin();
it != vertexLocalMap.end(); ++it) {
it->first.serialize(out);
SerUtil::serialize(out, it->second);
......@@ -804,7 +805,7 @@ namespace AMDiS {
nSize = edgeLocalMap.size();
SerUtil::serialize(out, nSize);
for (map<ElementObjectData, DofEdge>::iterator it = edgeLocalMap.begin();
for (boost::container::flat_map<ElementObjectData, DofEdge>::iterator it = edgeLocalMap.begin();
it != edgeLocalMap.end(); ++it) {
it->first.serialize(out);
SerUtil::serialize(out, it->second);
......@@ -812,7 +813,7 @@ namespace AMDiS {
nSize = faceLocalMap.size();
SerUtil::serialize(out, nSize);
for (map<ElementObjectData, DofFace>::iterator it = faceLocalMap.begin();
for (boost::container::flat_map<ElementObjectData, DofFace>::iterator it = faceLocalMap.begin();
it != faceLocalMap.end(); ++it) {
it->first.serialize(out);
SerUtil::serialize(out, it->second);
......@@ -821,7 +822,7 @@ namespace AMDiS {
nSize = vertexInRank.size();
SerUtil::serialize(out, nSize);
for (map<DegreeOfFreedom, map<int, ElementObjectData> >::iterator it = vertexInRank.begin();
for (flat_map<DegreeOfFreedom, flat_map<int, ElementObjectData> >::iterator it = vertexInRank.begin();
it != vertexInRank.end(); ++it) {
SerUtil::serialize(out, it->first);
serialize(out, it->second);
......@@ -829,7 +830,7 @@ namespace AMDiS {
nSize = edgeInRank.size();
SerUtil::serialize(out, nSize);
for (map<DofEdge, map<int, ElementObjectData> >::iterator it = edgeInRank.begin();
for (flat_map<DofEdge, flat_map<int, ElementObjectData> >::iterator it = edgeInRank.begin();
it != edgeInRank.end(); ++it) {
SerUtil::serialize(out, it->first);
serialize(out, it->second);
......@@ -837,7 +838,7 @@ namespace AMDiS {
nSize = faceInRank.size();
SerUtil::serialize(out, nSize);
for (map<DofFace, map<int, ElementObjectData> >::iterator it = faceInRank.begin();
for (flat_map<DofFace, flat_map<int, ElementObjectData> >::iterator it = faceInRank.begin();
it != faceInRank.end(); ++it) {
SerUtil::serialize(out, it->first);
serialize(out, it->second);
......@@ -957,7 +958,7 @@ namespace AMDiS {
vertexInRank.clear();
for (int i = 0; i < nSize; i++) {
DegreeOfFreedom dof;
map<int, ElementObjectData> data;
flat_map<int, ElementObjectData> data;
SerUtil::deserialize(in, dof);
deserialize(in, data);
vertexInRank[dof] = data;
......@@ -967,7 +968,7 @@ namespace AMDiS {
edgeInRank.clear();
for (int i = 0; i < nSize; i++) {
DofEdge edge;
map<int, ElementObjectData> data;
flat_map<int, ElementObjectData> data;
SerUtil::deserialize(in, edge);
deserialize(in, data);
edgeInRank[edge] = data;
......@@ -977,7 +978,7 @@ namespace AMDiS {
faceInRank.clear();
for (int i = 0; i < nSize; i++) {
DofFace face;
map<int, ElementObjectData> data;
flat_map<int, ElementObjectData> data;
SerUtil::deserialize(in, face);
deserialize(in, data);
faceInRank[face] = data;
......@@ -1055,11 +1056,11 @@ namespace AMDiS {
void ElementObjectDatabase::serialize(ostream &out,
map<int, ElementObjectData>& data)
flat_map<int, ElementObjectData>& data)
{
int nSize = data.size();
SerUtil::serialize(out, nSize);
for (map<int, ElementObjectData>::iterator it = data.begin();
for (flat_map<int, ElementObjectData>::iterator it = data.begin();
it != data.end(); ++it) {
SerUtil::serialize(out, it->first);
it->second.serialize(out);
......@@ -1068,7 +1069,7 @@ namespace AMDiS {
void ElementObjectDatabase::deserialize(istream &in,
map<int, ElementObjectData>& data)
flat_map<int, ElementObjectData>& data)
{
int nSize;
SerUtil::deserialize(in, nSize);
......@@ -1093,6 +1094,7 @@ namespace AMDiS {
const unsigned int faceSize = sizeof(DofFace);
const unsigned int vectorOverhead = sizeof(vector<int>);
const unsigned int mapOverhead = 48; //sizeof(_Rb_tree<int, int>);
const unsigned int flatMapOverhead = 24;
const unsigned int mapEntryOverhead = 40; // sizeof(_Rb_tree_node_base);
const unsigned int setOverhead = 48;
const unsigned int setEntryOverhead = 40;
......@@ -1127,41 +1129,38 @@ namespace AMDiS {
tmp = 0;
// vertexLocalMap
tmp += mapOverhead + vertexLocalMap.size() * (mapEntryOverhead + structElObjDataSize + dofSize);
tmp += flatMapOverhead + vertexLocalMap.size() * (structElObjDataSize + dofSize);
// edgeLocalMap
tmp += mapOverhead + edgeLocalMap.size() * (mapEntryOverhead + structElObjDataSize + edgeSize);
tmp += flatMapOverhead + edgeLocalMap.size() * (structElObjDataSize + edgeSize);
// faceLocalMap
tmp += mapOverhead + faceLocalMap.size() * (mapEntryOverhead + structElObjDataSize + faceSize);
tmp += flatMapOverhead + faceLocalMap.size() * (structElObjDataSize + faceSize);
MSG("EL-OBJ-DB MEM 04: %d\n", tmp);
value += tmp;
// vertexInRank
tmp = mapOverhead + vertexInRank.size() * mapEntryOverhead;
for (map<DegreeOfFreedom, map<int, ElementObjectData> >::iterator mapIt =
tmp = flatMapOverhead;
for (flat_map<DegreeOfFreedom, flat_map<int, ElementObjectData> >::iterator mapIt =
vertexInRank.begin(); mapIt != vertexInRank.end(); ++mapIt)
tmp += dofSize + mapOverhead +
mapIt->second.size() * (mapEntryOverhead + sizeof(int) + structElObjDataSize);
tmp += dofSize + flatMapOverhead + mapIt->second.size() * (sizeof(int) + structElObjDataSize);
MSG("EL-OBJ-DB MEM 05: %d\n", tmp);
value += tmp;
// edgeInRank
tmp += mapOverhead + edgeInRank.size() * mapEntryOverhead;
for (map<DofEdge, map<int, ElementObjectData> >::iterator mapIt =
tmp = mapOverhead;
for (flat_map<DofEdge, flat_map<int, ElementObjectData> >::iterator mapIt =
edgeInRank.begin(); mapIt != edgeInRank.end(); ++mapIt)
tmp += edgeSize + mapOverhead +
mapIt->second.size() * (mapEntryOverhead + sizeof(int) + structElObjDataSize);
tmp += edgeSize + flatMapOverhead + mapIt->second.size() * (sizeof(int) + structElObjDataSize);
MSG("EL-OBJ-DB MEM 06: %d\n", tmp);
value += tmp;
// faceInRank
tmp = mapOverhead + faceInRank.size() * mapEntryOverhead;
for (map<DofFace, map<int, ElementObjectData> >::iterator mapIt =
tmp = mapOverhead;
for (flat_map<DofFace, flat_map<int, ElementObjectData> >::iterator mapIt =
faceInRank.begin(); mapIt != faceInRank.end(); ++mapIt)
tmp += faceSize + mapOverhead +
mapIt->second.size() * (mapEntryOverhead + sizeof(int) + structElObjDataSize);
tmp += faceSize + flatMapOverhead + mapIt->second.size() * (sizeof(int) + structElObjDataSize);
MSG("EL-OBJ-DB MEM 07: %d\n", tmp);
value += tmp;
tmp = 0;
......
AMDiS/src/parallel/ElementObjectDatabase.h
View file @ 2d6d2384
......@@ -27,6 +27,7 @@
#include <vector>
#include <boost/tuple/tuple.hpp>
#include <boost/tuple/tuple_comparison.hpp>
#include <boost/container/flat_map.hpp>
#include "AMDiS_fwd.h"
#include "Containers.h"
......@@ -39,6 +40,8 @@ namespace AMDiS {
using namespace std;
using boost::container::flat_map;
/// Just to templatize the typedef.
template<typename T>
struct PerBoundMap {
......@@ -210,7 +213,7 @@ namespace AMDiS {
/// Returns the data of the current iterator position.
map<int, ElementObjectData>& getIterateData()
flat_map<int, ElementObjectData>& getIterateData()
{
switch (iterGeoPos) {
case VERTEX:
......@@ -315,7 +318,7 @@ namespace AMDiS {
/// the vertex, the element with the highest element index is given. If the
/// vertex is not contained in a rank's subdomain, it will not be considered
/// in this mapping.
map<int, ElementObjectData>& getElementsInRank(DegreeOfFreedom vertex)
flat_map<int, ElementObjectData>& getElementsInRank(DegreeOfFreedom vertex)
{
return vertexInRank[vertex];
}
......@@ -326,7 +329,7 @@ namespace AMDiS {
/// the edge, the element with the highest element index is given. If the
/// edge is not contained in a rank's subdomain, it will not be considered
/// in this mapping.
map<int, ElementObjectData>& getElementsInRank(DofEdge edge)
flat_map<int, ElementObjectData>& getElementsInRank(DofEdge edge)
{
return edgeInRank[edge];
}
......@@ -335,7 +338,7 @@ namespace AMDiS {
/// element data objects, which identify on the rank the element which
/// contains this face. If the face is not contained in a rank's subdomain,
/// it will not be considered in this mapping.
map<int, ElementObjectData>& getElementsInRank(DofFace face)
flat_map<int, ElementObjectData>& getElementsInRank(DofFace face)
{
return faceInRank[face];
}
......@@ -483,10 +486,10 @@ namespace AMDiS {
void deserialize(istream &in, vector<ElementObjectData>& elVec);
/// Some auxiliary function to write the element object database to disk.
void serialize(ostream &out, map<int, ElementObjectData>& data);
void serialize(ostream &out, flat_map<int, ElementObjectData>& data);
/// Some auxiliary function to read the element object database from disk.
void deserialize(istream &in, map<int, ElementObjectData>& data);
void deserialize(istream &in, flat_map<int, ElementObjectData>& data);
int getOwner(vector<ElementObjectData>& objData, int level);
private:
......@@ -507,36 +510,36 @@ namespace AMDiS {
/// Maps to an element object the corresponding vertex DOF.
map<ElementObjectData, DegreeOfFreedom> vertexLocalMap;
flat_map<ElementObjectData, DegreeOfFreedom> vertexLocalMap;
/// Maps to an element object the corresponding edge.
map<ElementObjectData, DofEdge> edgeLocalMap;
flat_map<ElementObjectData, DofEdge> edgeLocalMap;
/// Maps to an element object the corresponding face.
map<ElementObjectData, DofFace> faceLocalMap;
flat_map<ElementObjectData, DofFace> faceLocalMap;
/// Defines to each vertex DOF a map that maps to each rank number the element
/// objects that have this vertex DOF in common.
map<DegreeOfFreedom, map<int, ElementObjectData> > vertexInRank;
flat_map<DegreeOfFreedom, flat_map<int, ElementObjectData> > vertexInRank;
/// Defines to each edge a map that maps to each rank number the element
/// objects that have this edge in common.
map<DofEdge, map<int, ElementObjectData> > edgeInRank;
flat_map<DofEdge, flat_map<int, ElementObjectData> > edgeInRank;
/// Defines to each face a map that maps to each rank number the element
/// objects that have this face in common.
map<DofFace, map<int, ElementObjectData> > faceInRank;
flat_map<DofFace, flat_map<int, ElementObjectData> > faceInRank;
/// Vertex iterator to iterate over \ref vertexInRank
map<DegreeOfFreedom, map<int, ElementObjectData> >::iterator vertexIter;
flat_map<DegreeOfFreedom, flat_map<int, ElementObjectData> >::iterator vertexIter;
/// Edge iterator to iterate over \ref edgeInRank
map<DofEdge, map<int, ElementObjectData> >::iterator edgeIter;
flat_map<DofEdge, flat_map<int, ElementObjectData> >::iterator edgeIter;
/// Face iterator to iterate over \ref faceInRank
map<DofFace, map<int, ElementObjectData> >::iterator faceIter;
flat_map<DofFace, flat_map<int, ElementObjectData> >::iterator faceIter;
/// Defines the geometrical iteration index of the iterators. I.e., the value
......
AMDiS/src/parallel/InteriorBoundary.cc
View file @ 2d6d2384
......@@ -49,7 +49,7 @@ namespace AMDiS {
GeoIndex geoIndex = INDEX_OF_DIM(geoPos, mesh->getDim());
while (elObjDb.iterate(geoIndex)) {
map<int, ElementObjectData>& objData = elObjDb.getIterateData();
flat_map<int, ElementObjectData>& objData = elObjDb.getIterateData();
// Test, if this is a boundary object of this rank.
if (!(objData.count(globalMpiRank) && objData.size() > 1))
......@@ -61,7 +61,7 @@ namespace AMDiS {
if (allRanks) {
boundaryWithinMpiGroup = true;
} else {
for (map<int, ElementObjectData>::iterator it = objData.begin();
for (flat_map<int, ElementObjectData>::iterator it = objData.begin();
it != objData.end(); ++it) {
if (it->first != globalMpiRank && levelRanks.count(it->first)) {
boundaryWithinMpiGroup = true;
......@@ -95,7 +95,7 @@ namespace AMDiS {
if (owner == globalMpiRank) {
for (map<int, ElementObjectData>::iterator it2 = objData.begin();
for (flat_map<int, ElementObjectData>::iterator it2 = objData.begin();
it2 != objData.end(); ++it2) {
if (it2->first == globalMpiRank)
continue;
......@@ -162,7 +162,7 @@ namespace AMDiS {
ElementObjectData& perDofEl0 =
elObjDb.getElementsInRank(it->first.first)[globalMpiRank];
for (map<int, ElementObjectData>::iterator elIt = elObjDb.getElementsInRank(it->first.second).begin();
for (flat_map<int, ElementObjectData>::iterator elIt = elObjDb.getElementsInRank(it->first.second).begin();
elIt != elObjDb.getElementsInRank(it->first.second).end(); ++elIt) {
int otherElementRank = elIt->first;
......@@ -185,7 +185,7 @@ namespace AMDiS {
if (removePeriodicBoundary) {
bound.type = INTERIOR;
map<int, ElementObjectData> objData =
flat_map<int, ElementObjectData> objData =
elObjDb.getElementsInRank(it->first.first);
objData.insert(elObjDb.getElementsInRank(it->first.second).begin(),
elObjDb.getElementsInRank(it->first.second).end());
......@@ -255,7 +255,7 @@ namespace AMDiS {
ElementObjectData& perEdgeEl0 =
elObjDb.getElementsInRank(it->first.first)[globalMpiRank];
for (map<int, ElementObjectData>::iterator elIt = elObjDb.getElementsInRank(it->first.second).begin();
for (flat_map<int, ElementObjectData>::iterator elIt = elObjDb.getElementsInRank(it->first.second).begin();
elIt != elObjDb.getElementsInRank(it->first.second).end(); ++elIt) {
int otherElementRank = elIt->first;
......@@ -277,7 +277,7 @@ namespace AMDiS {
if (removePeriodicBoundary) {
bound.type = INTERIOR;
map<int, ElementObjectData> objData =
flat_map<int, ElementObjectData> objData =
elObjDb.getElementsInRank(it->first.first);
objData.insert(elObjDb.getElementsInRank(it->first.second).begin(),
elObjDb.getElementsInRank(it->first.second).end());
......@@ -337,7 +337,7 @@ namespace AMDiS {
ElementObjectData& perFaceEl0 =
elObjDb.getElementsInRank(it->first.first)[globalMpiRank];
for (map<int, ElementObjectData>::iterator elIt = elObjDb.getElementsInRank(it->first.second).begin();
for (flat_map<int, ElementObjectData>::iterator elIt = elObjDb.getElementsInRank(it->first.second).begin();
elIt != elObjDb.getElementsInRank(it->first.second).end(); ++elIt) {
int otherElementRank = elIt->first;
......@@ -359,7 +359,7 @@ namespace AMDiS {
if (removePeriodicBoundary) {
bound.type = INTERIOR;
map<int, ElementObjectData> objData =
flat_map<int, ElementObjectData> objData =
elObjDb.getElementsInRank(it->first.first);
objData.insert(elObjDb.getElementsInRank(it->first.second).begin(),
elObjDb.getElementsInRank(it->first.second).end());
......
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