another CMakeLists correction

AMDiS/cmake3/AMDISConfig.cmake.in

@@ -137,6 +137,9 @@ if (AMDIS_NEED_EXTENSIONS)
     find_library(_EXTENSIONS_LIB amdis_extensions PATHS ${AMDIS_DIR}/../../lib/amdis/)
     if (_EXTENSIONS_LIB)
         target_include_directories(amdis_base INTERFACE ${AMDIS_INCLUDE_DIR}/extensions)
+        target_include_directories(amdis_base INTERFACE ${AMDIS_INCLUDE_DIR}/extensions/nanoflann)
+        target_include_directories(amdis_base INTERFACE ${AMDIS_INCLUDE_DIR}/extensions/pugixml)
+        target_include_directories(amdis_base INTERFACE ${AMDIS_INCLUDE_DIR}/extensions/time)
         target_link_libraries(amdis_base INTERFACE ${_EXTENSIONS_LIB})
         if (AMDIS_NEED_BASE_PROBLEMS)
             target_include_directories(amdis_base INTERFACE ${AMDIS_INCLUDE_DIR}/extensions/base_problems)

AMDiS/cmake3/amdis_extensions.cmake

@@ -9,7 +9,7 @@ if (ENABLE_EXTENSIONS)
         if (NOT EXISTS ${EXTENSIONS_DIR}/Helpers.h OR NOT EXISTS ${EXTENSIONS_DIR}/ExtendedProblemStat.h)
             message(FATAL_ERROR "Wrong extensions directory! Directory must contain the files 'Helpers.h' and 'ExtendedProblemStat.h'")
         endif ()
-        
+
         add_library(amdis_extensions
             ${EXTENSIONS_DIR}/Helpers.cc
             ${EXTENSIONS_DIR}/BackgroundMesh.cc
@@ -20,7 +20,7 @@ if (ENABLE_EXTENSIONS)
             ${EXTENSIONS_DIR}/pugixml/src/pugixml.cpp
         )
         add_library(AMDiS::extensions ALIAS amdis_extensions)
-        
+
         target_compile_definitions(amdis_extensions PRIVATE HAVE_EXTENSIONS=1)
         target_include_directories(amdis_extensions PRIVATE
             ${EXTENSIONS_DIR}
@@ -28,8 +28,8 @@ if (ENABLE_EXTENSIONS)
             ${EXTENSIONS_DIR}/nanoflann
             ${EXTENSIONS_DIR}/pugixml/src
         )
-        
-        set(INSTALL_SUBDIRS . time preconditioner nanflann)
+
+        set(INSTALL_SUBDIRS . time preconditioner nanoflann)
 
         if (ENABLE_SEQ_PETSC)
             target_sources(amdis_extensions PRIVATE
@@ -44,7 +44,7 @@ if (ENABLE_EXTENSIONS)
                 ${EXTENSIONS_DIR}/preconditioner/PetscSolverPfc_diag.cc)
             target_link_libraries(amdis_extensions amdis_parallel)
         endif (ENABLE_PARALLEL_DOMAIN)
-        
+
       if (ENABLE_BASE_PROBLEMS)
             if (ENABLE_REINIT)
                 target_sources(amdis_extensions PRIVATE
@@ -74,13 +74,13 @@ if (ENABLE_EXTENSIONS)
                 # 		  ${EXTENSIONS_DIR}/base_problems/NavierStokes_Chorin.cc
                 # 		  ${EXTENSIONS_DIR}/base_problems/NavierStokesPhase_Chorin.cc
                 # 		  ${EXTENSIONS_DIR}/base_problems/VacancyPhaseFieldCrystal.cc
-            
+
             target_compile_definitions(amdis_extensions PRIVATE HAVE_BASE_PROBLEMS=1)
             target_include_directories(amdis_extensions PRIVATE ${EXTENSIONS_DIR}/base_problems)
-            
+
             list(APPEND INSTALL_SUBDIRS base_problems)
         endif (ENABLE_BASE_PROBLEMS)
-        
+
         target_link_libraries(amdis_extensions amdis amdis_reinit)
 
         # specify how to install this target:

AMDiS/cmake3/find_boost.cmake

 if (BOOST_ROOT)
-    file(TO_NATIVE_PATH ${BOOST_ROOT} BOOST_ROOT)
+    file(TO_CMAKE_PATH ${BOOST_ROOT} BOOST_ROOT)
 endif (BOOST_ROOT)
 if (BOOST_LIBRARYDIR)
-    file(TO_NATIVE_PATH ${BOOST_LIBRARYDIR} BOOST_LIBRARYDIR)
+    file(TO_CMAKE_PATH ${BOOST_LIBRARYDIR} BOOST_LIBRARYDIR)
 endif (BOOST_LIBRARYDIR)
 
 set(BOOST_VERSION "1.48")

AMDiS/cmake3/find_petsc.cmake

@@ -43,7 +43,7 @@ function (petsc_get_version)
 endfunction ()
 
 if (PETSC_DIR)
-    file(TO_NATIVE_PATH ${PETSC_DIR} PETSC_DIR)
+    file(TO_CMAKE_PATH ${PETSC_DIR} PETSC_DIR)
 endif (PETSC_DIR)
 
 find_path (PETSC_DIR include/petsc.h

AMDiS/cmake3/find_umfpack.cmake

@@ -4,7 +4,7 @@ if (ENABLE_UMFPACK OR AMDIS_NEED_UMFPACK)
     endif (WIN32)
 
     if (SuiteSparse_DIR)
-       file(TO_NATIVE_PATH ${SuiteSparse_DIR} SuiteSparse_DIR)
+       file(TO_CMAKE_PATH ${SuiteSparse_DIR} SuiteSparse_DIR)
     endif (SuiteSparse_DIR)
 
     # try to use a cmake-package of suitesparse