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Commit 4ffe4a74 authored by Praetorius, Simon's avatar Praetorius, Simon
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Hypre-solver updated and new preconditioner added

parent d41f7355
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Showing with 190 additions and 130 deletions
AMDiS/src/AMDiS.cc
View file @ 4ffe4a74
......@@ -24,6 +24,9 @@
#ifdef HAVE_ZOLTAN
#include <zoltan_cpp.h>
#endif
#ifdef MTL_HAS_HYPRE
#include "mpi.h"
#endif
#include "boost/program_options.hpp"
namespace AMDiS {
......@@ -36,23 +39,24 @@ namespace AMDiS {
void init(int argc, char **argv, std::string initFileName)
{
#if defined(HAVE_PARALLEL_DOMAIN_AMDIS) || defined(HAVE_SEQ_PETSC)
#ifdef HAVE_PARALLEL_MTL4
mtl_environment = new mtl::par::environment(argc, argv);
#else
#elif defined HAVE_PETSC || defined HAVE_SEQ_PETSC || defined HAVE_PARALLEL_PETSC
PetscInitialize(&argc, &argv, NULL, NULL);
#if defined(HAVE_PARALLEL_DOMAIN_AMDIS)
#elif defined MTL_HAS_HYPRE
MPI_Init(&argc, &argv);
#endif
#if defined(HAVE_PARALLEL_DOMAIN_AMDIS)
Parallel::mpi::startRand();
#else
#else
srand(time(0));
#endif
#endif
#endif
#ifdef HAVE_ZOLTAN
float zoltanVersion = 0.0;
Zoltan_Initialize(argc, argv, &zoltanVersion);
#endif
#endif
Parameters::clearData();
......@@ -139,14 +143,15 @@ namespace AMDiS {
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
Parallel::MeshDistributor::globalMeshDistributor->exitParallelization();
delete Parallel::MeshDistributor::globalMeshDistributor;
#ifdef HAVE_PARALLEL_MTL4
if (mtl_environment)
delete mtl_environment;
#endif
#endif
#if (defined HAVE_SEQ_PETSC) || (defined HAVE_PARALLEL_PETSC)
#ifdef HAVE_PARALLEL_MTL4
if (mtl_environment)
delete mtl_environment;
#elif defined HAVE_PETSC || defined HAVE_SEQ_PETSC || defined HAVE_PARALLEL_PETSC
PetscFinalize();
#elif defined MTL_HAS_HYPRE
MPI_Finalize();
#endif
}
......
AMDiS/src/CreatorMap.cc
View file @ 4ffe4a74
......@@ -137,6 +137,10 @@ namespace AMDiS {
creator = new DiagonalPreconditioner::Creator;
addCreator("diag", creator);
creator = new MassLumpingPreconditioner::Creator;
addCreator("lumping", creator);
addCreator("masslumping", creator);
creator = new ILUPreconditioner::Creator;
addCreator("ilu", creator);
......
AMDiS/src/DOFVector.h
View file @ 4ffe4a74
......@@ -575,7 +575,7 @@ namespace AMDiS {
void print() const;
///
int calcMemoryUsage() const;
size_t calcMemoryUsage() const;
/// Computes the coefficients of the interpolant of the function fct and
/// stores these in the DOFVector
......
AMDiS/src/DOFVector.hh
View file @ 4ffe4a74
......@@ -402,9 +402,9 @@ namespace AMDiS {
template<typename T>
int DOFVector<T>::calcMemoryUsage() const
size_t DOFVector<T>::calcMemoryUsage() const
{
int result = 0;
size_t result = 0;
result += sizeof(DOFVector<T>);
result += vec.size() * sizeof(T);
......
AMDiS/src/solver/HypreSolver.h
View file @ 4ffe4a74
......@@ -43,55 +43,142 @@ namespace AMDiS {
typedef MTLTypes::MTLVector VectorType;
typedef MTL4Runner< MatrixType, VectorType > super;
/** Interface to the HYPRE BoomerAMG solver [...]
* Parameters provided by AMDiS:
*
* [solver]->cycle mode:
* 1...V-cycle
* 2...W-cycle
*
* [solver]->interpolation type:
* 0...classical modified interpolation
* 1...LS interpolation (for use with GSMG)
* 2...classical modified interpolation for hyperbolic PDEs
* 3...direct interpolation (with separation of weights)
* 4...multipass interpolation
* 5...multipass interpolation (with separation of weights)
* 6...extended+i interpolation
* 7...extended+i (if no common C neighbor) interpolation
* 8...standard interpolation
* 9...standard interpolation (with separation of weights)
* 10..classical block interpolation (for use with nodal systems version only)
* 11..classical block interpolation (for use with nodal systems version only)
* with diagonalized diagonal blocks
* 12..FF interpolation
* 13..FF1 interpolation
* 14..extended interpolation
*
* [solver]->info:
* 0...no printout (default)
* 1...print setup information
* 2...print solve information
* 3...print both setup and solve information
*
* [solver]->relax type:
* 0...Jacobi
* 1...Gauss-Seidel, sequential (very slow!)
* 2...Gauss-Seidel, interior points in parallel, boundary sequential (slow!)
* 3...hybrid Gauss-Seidel or SOR, forward solve
* 4...hybrid Gauss-Seidel or SOR, backward solve
* 5...hybrid chaotic Gauss-Seidel (works only with OpenMP)
* 6...hybrid symmetric Gauss-Seidel or SSOR
* 9...Gaussian elimination (only on coarsest level)
* */
Hypre_Runner(LinearSolver* oemPtr)
: oem(*oemPtr),
solver(nullptr)
useTransposed(false),
solverCreated(false)
{
int cycleMode = 1, interpolation = 0;
int cycleMode = -1, interpolation = -1, relaxation = -1;
Parameters::get(oem.getName() + "->cycle mode", cycleMode);
Parameters::get(oem.getName() + "->interpolation type", interpolation);
Parameters::get(oem.getName() + "->relax type", relaxation);
config.maxIter(oem.getMaxIterations());
config.interpolation(interpolation);
config.interpolationType(interpolation);
config.relaxType(relaxation);
config.cycle(cycleMode);
config.tolerance(oem.getTolerance());
config.tolerance(oem.getRelative());
config.printLevel(oem.getInfo());
}
~Hypre_Runner()
{
if (solver) {
delete solver;
solver = nullptr;
}
exit();
}
/// Implementation of \ref MTL4Runner::init()
void init(const typename super::BlockMatrix& A, const MatrixType& fullMatrix) override
void init(const typename super::BlockMatrix& A, const MatrixType& mtlMatrix) override
{
solver = new mtl::HypreSolverWrapper(fullMatrix);
setTransposed(typename MatrixType::orientation());
// TODO: copy matrix directly from DOFMatrix to HYPRE matrix (?)
hypreMatrix.init(mtlMatrix);
HYPRE_IJMatrixGetObject(hypreMatrix, (void**) &matrix);
HYPRE_BoomerAMGCreate(&solver);
mtl::dense_vector<double> swap(1, 0.0);
mtl::HypreParVector x(swap);
HYPRE_BoomerAMGSetup(solver, matrix, x, x);
solverCreated = true;
}
/// Implementation of \ref MTL4Runner::solve()
int solve(const MatrixType& A , VectorType& x, const VectorType& b) override
int solve(const MatrixType& A , VectorType& mtlX, const VectorType& mtlB) override
{
int error = (*solver)(x, b, config);
mtl::HypreParVector x(mtlX);
mtl::HypreParVector b(mtlB);
config(solver);
int error = 0;
if(useTransposed)
error = HYPRE_BoomerAMGSolveT(solver, matrix, b, x);
else
error = HYPRE_BoomerAMGSolve(solver, matrix, b, x);
mtl::convert(x.getHypreVector(), mtlX);
int num_iter = 0;
HYPRE_BoomerAMGGetNumIterations(solver, &num_iter);
oem.setIterations(num_iter);
double rel_resid = 0.0;
HYPRE_BoomerAMGGetFinalRelativeResidualNorm(solver, &rel_resid);
oem.setRelativeResidual(rel_resid);
oem.setErrorCode(error);
return error;
}
/// Implementation of \ref OEMRunner::exit()
void exit()
{
if (solver) {
delete solver;
solver = nullptr;
}
if (solverCreated)
HYPRE_BoomerAMGDestroy(solver);
solverCreated = false;
}
private:
inline void setTransposed(mtl::row_major)
{
useTransposed = false;
}
inline void setTransposed(mtl::col_major)
{
useTransposed = true;
}
protected:
LinearSolver& oem;
mtl::HypreSolverWrapper *solver;
private:
HYPRE_Solver solver;
HYPRE_ParCSRMatrix matrix;
mtl::HypreMatrix hypreMatrix;
mtl::AMGConfigurator config;
bool useTransposed;
bool solverCreated;
};
......
AMDiS/src/solver/ITL_Preconditioner.h
View file @ 4ffe4a74
......@@ -29,6 +29,8 @@
#include "DOFMatrix.h"
#include "CreatorInterface.h"
#include "itl/masslumping.hpp"
#include <boost/numeric/itl/itl.hpp>
#include <boost/numeric/itl/pc/ilu_0.hpp>
#include <boost/numeric/itl/pc/ic_0.hpp>
......@@ -153,6 +155,15 @@ namespace AMDiS {
* Diagonal preconditioner \f$ M^{-1} \f$ for the system \f$ Ax=b \f$ is defined as: \f$ M=diag(A) \f$.
*/
typedef ITL_Preconditioner<itl::pc::diagonal<MTLTypes::MTLMatrix>, MTLTypes::MTLMatrix, MTLTypes::MTLVector > DiagonalPreconditioner;
/**
* \ingroup Solver
* \class AMDiS::DiagonalPreconditioner
* \brief ITL_Preconditioner implementation of diagonal (jacobi) preconditioner \implements ITL_Preconditioner
*
* Diagonal preconditioner \f$ M^{-1} \f$ for the system \f$ Ax=b \f$ is defined as: \f$ M_ii=sum_j(A_ij) \f$.
*/
typedef ITL_Preconditioner<itl::pc::masslumping<MTLTypes::MTLMatrix>, MTLTypes::MTLMatrix, MTLTypes::MTLVector > MassLumpingPreconditioner;
/**
......
AMDiS/src/solver/LinearSolver.h
View file @ 4ffe4a74
......@@ -92,6 +92,7 @@ namespace AMDiS {
max_iter(1000),
info(0),
residual(-1.0),
rel_residual(-1.0),
print_cycle(100),
iterations(-1),
error(-1),
......@@ -204,21 +205,21 @@ namespace AMDiS {
virtual OEMPreconditioner* getLeftPrecon()
{
FUNCNAME("LinearSolver::getLeftPrecon()");
ERROR_EXIT("no left preconditioner provided!\n");
ERROR("no left preconditioner provided!\n");
return nullptr;
}
virtual OEMPreconditioner* getRightPrecon()
{
FUNCNAME("LinearSolver::getRightPrecon()");
ERROR_EXIT("no right preconditioner provided!\n");
ERROR("no right preconditioner provided!\n");
return nullptr;
}
virtual OEMRunner* getRunner()
{
FUNCNAME("LinearSolver::getRunner()");
ERROR_EXIT("no runner provided!\n");
ERROR("no runner provided!\n");
return nullptr;
}
......@@ -245,6 +246,11 @@ namespace AMDiS {
relative = rel;
}
inline void setRelativeResidual(double r)
{
rel_residual = r;
}
/// Sets \ref max_iter
inline void setMaxIterations(int i)
{
......@@ -294,8 +300,11 @@ namespace AMDiS {
/// info level during solving the system. Set in LinearSolver's constructor.
int info;
/// current residual.
/// current absolute residual norm.
double residual;
/// current relative residual norm.
double rel_residual;
/// Print cycle, after how many iterations the residuum norm is logged.
int print_cycle;
......
AMDiS/src/solver/itl/gmres_householder.hpp
View file @ 4ffe4a74
......@@ -52,27 +52,24 @@ int gmres_householder_full(const Matrix &A, Vector &x, const Vector &b,
if (size(b) == 0) throw mtl::logic_error("empty rhs vector");
const Scalar zero= math::zero(Scalar()), dbl_tol= 1.e-16; // kappa in [1.25, 100]
Scalar rho, bnrm2, temp, alpha, beta;
const Scalar zero= math::zero(Scalar()), dbl_tol= 1.e-16;
Scalar rho, bnrm2, temp, beta;
Size k, kmax(std::min(size(x), Size(iter.max_iterations() - iter.iterations())));
Vector w(b - A *x), r(solve(L,w));
mtl::matrix::multi_vector<Vector> V(Vector(resource(x), zero), kmax+1);
mtl::vector::dense_vector<Scalar> sn(kmax, zero), cs(kmax, zero), s(kmax+1, zero), y(kmax, zero); // replicated in distributed solvers
mtl::matrix::dense2D<Scalar> H(kmax, kmax);
bnrm2 = two_norm(b);
if (bnrm2 < dbl_tol)
bnrm2 = 1.0;
// TODO: if rhs=0 => solution=0 ??
temp = two_norm(r); // norm of preconditioned residual
rho = temp * reciprocal(bnrm2);
if (iter.finished(rho)) // initial guess is good enough solution
return iter;
// u = r + sing(r(0))*||r||*e0
// u = r + sign(r(0))*||r||*e0
beta = signum(r[0])*temp;
w = r;
w[0] += beta;
......@@ -114,13 +111,13 @@ int gmres_householder_full(const Matrix &A, Vector &x, const Vector &b,
irange range_to_end(k+1,imax);
set_to_zero(V.vector(k+1));
V.vector(k+1)[range_to_end] = w[range_to_end];
alpha = two_norm(V.vector(k+1));
if (alpha != 0.0) {
alpha *= signum(w[k+1]);
V.vector(k+1)[k+1] += alpha;
beta = two_norm(V.vector(k+1));
if (beta != 0.0) {
beta *= signum(w[k+1]);
V.vector(k+1)[k+1] += beta;
V.vector(k+1) *= reciprocal(two_norm(V.vector(k+1)));
w[k+1] = -alpha;
w[k+1] = -beta;
}
for (Size i= 0; i < k; i++) {
......@@ -133,7 +130,7 @@ int gmres_householder_full(const Matrix &A, Vector &x, const Vector &b,
s[k+1] = -sn[k]*s[k];
s[k] = conj(cs[k])*s[k];
w[k] = cs[k]*w[k] + sn[k]*w[k+1];
w[k] = cs[k]*w[k] + sn[k]*w[k+1];
w[k+1] = 0.0;
irange range(num_rows(H));
......
AMDiS/src/solver/itl/hypre.hpp
View file @ 4ffe4a74
......@@ -35,8 +35,16 @@ namespace mtl {
class HypreMatrix
{
public:
HypreMatrix() : initialized(false) {}
template< typename Matrix >
HypreMatrix(const Matrix& matrix)
{
init(matrix);
}
template< typename Matrix >
void init(const Matrix& matrix)
{
MPI_Comm comm = MPI_COMM_WORLD;
int ilower(0);
......@@ -69,17 +77,21 @@ namespace mtl {
delete [] rows;
delete [] cols;
initialized = true;
}
~HypreMatrix()
{
HYPRE_IJMatrixDestroy(ij_matrix);
if(initialized)
HYPRE_IJMatrixDestroy(ij_matrix);
initialized = false;
}
inline operator HYPRE_IJMatrix() { return ij_matrix; }
private:
HYPRE_IJMatrix ij_matrix;
bool initialized;
};
class HypreVector
......@@ -145,87 +157,16 @@ namespace mtl {
HYPRE_ParVector vec;
HypreVector vec2;
};
class HypreSolverWrapper
{
public:
template< typename Matrix >
HypreSolverWrapper(const Matrix& mat)
: matrix(mat)
{
setTransposed(typename Matrix::orientation());
HYPRE_IJMatrixGetObject(matrix, (void**) &A);
HYPRE_BoomerAMGCreate(&solver);
mtl::dense_vector< double > swap(1, 0.0);
HypreParVector x(swap);
HYPRE_BoomerAMGSetup(solver, A, x, x);
}
inline void solve(HypreParVector& x, HypreParVector& b) const
{
if(useTransposed)
HYPRE_BoomerAMGSolveT(solver, A, b, x);
else
HYPRE_BoomerAMGSolve(solver, A, b, x);
}
template< typename Vector >
int operator()(Vector& mtlX, const Vector& mtlB) const
{
HypreParVector x(mtlX);
HypreParVector b(mtlB);
solve(x, b);
convert(x.getHypreVector(), mtlX);
return 0;
}
template< typename Vector, typename Configurator >
int operator()(Vector& mtlX, const Vector& mtlB, const Configurator& config)
{
HypreParVector x(mtlX);
HypreParVector b(mtlB);
config(solver);
solve(x, b);
convert(x.getHypreVector(), mtlX);
return 0;
}
~HypreSolverWrapper()
{
HYPRE_BoomerAMGDestroy(solver);
}
private:
inline void setTransposed(row_major )
{
useTransposed = false;
}
inline void setTransposed(col_major )
{
useTransposed = true;
}
private:
HYPRE_Solver solver;
HYPRE_ParCSRMatrix A;
HypreMatrix matrix;
bool useTransposed;
};
class AMGConfigurator
{
public:
enum CycleMode { VCYCLE=1, WCYCLE=2 };
enum CycleDirection { DOWN=1, UP=2, COARSEST=3 };
AMGConfigurator()
: _debugFlag(0), _printLevel(0), _logLevel(0),
_tolerance(1.0e-7), _cycle(VCYCLE), _finestSweep(1),
_interpolation(0), _maxIter(20)
_tolerance(1.0e-7), _cycle(-1), _finestSweep(1),
_interpolation(-1), _relaxation(-1), _maxIter(20)
{
for(int i(2); i>= 0; --i)
_sweeps[i] = 1;
......@@ -235,8 +176,7 @@ namespace mtl {
AMGConfigurator& printLevel(int pl) { _printLevel = pl; return *this; }
AMGConfigurator& logLevel(int ll) { _logLevel = ll; if (ll > 1) throw std::runtime_error("logging > 1 not supported\n2"); return *this; }
AMGConfigurator& tolerance(double tol) { _tolerance = tol; return *this; }
AMGConfigurator& cycle(CycleMode c) { _cycle = c; return *this; }
AMGConfigurator& cycle(int c) { if (c == 1) _cycle = VCYCLE; else _cycle = WCYCLE; return *this; }
AMGConfigurator& cycle(int c) { _cycle = c; return *this; }
AMGConfigurator& finestSweep(int nr) { _finestSweep = nr; return *this; }
AMGConfigurator& sweep(CycleDirection dir, int nr)
......@@ -245,7 +185,8 @@ namespace mtl {
return *this;
}
AMGConfigurator& interpolation(int type) {_interpolation = type; return *this; }
AMGConfigurator& interpolationType(int type) {_interpolation = type; return *this; }
AMGConfigurator& relaxType(int type) {_relaxation = type; return *this; }
AMGConfigurator& maxIter(int iter) { _maxIter = iter; return *this;}
inline void operator()(HYPRE_Solver& solver) const
......@@ -254,12 +195,17 @@ namespace mtl {
HYPRE_BoomerAMGSetPrintLevel(solver, _printLevel);
HYPRE_BoomerAMGSetLogging(solver, _logLevel);
HYPRE_BoomerAMGSetTol(solver, _tolerance);
HYPRE_BoomerAMGSetCycleType(solver, _cycle);
if (_cycle >= 0)
HYPRE_BoomerAMGSetCycleType(solver, _cycle);
HYPRE_BoomerAMGSetNumSweeps(solver, _finestSweep);
for(int i(3); i >= 1; --i) {
HYPRE_BoomerAMGSetCycleNumSweeps(solver, _sweeps[i-1], i);
}
HYPRE_BoomerAMGSetInterpType(solver, _interpolation);
if (_interpolation >= 0)
HYPRE_BoomerAMGSetInterpType(solver, _interpolation);
if (_relaxation >= 0)
HYPRE_BoomerAMGSetRelaxType(solver, _relaxation);
HYPRE_BoomerAMGSetMaxIter(solver, _maxIter);
}
......@@ -268,10 +214,11 @@ namespace mtl {
int _printLevel;
int _logLevel;
double _tolerance;
CycleMode _cycle;
int _cycle;
int _finestSweep;
int _sweeps[3];
int _interpolation;
int _relaxation;
int _maxIter;
};
......
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