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Aland, Sebastian
amdis
Commits
73afa800
Commit
73afa800
authored
Jan 19, 2010
by
Thomas Witkowski
Browse files
Code refactoring in parallelization part.
parent
7908ff20
Changes
4
Hide whitespace changes
Inline
Side-by-side
AMDiS/libtool
View file @
73afa800
...
...
@@ -30,10 +30,10 @@
# the same distribution terms that you use for the rest of that program.
# A sed program that does not truncate output.
SED
=
"/bin/sed"
SED
=
"/
usr/
bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
Xsed
=
"/bin/sed -e 1s/^X//"
Xsed
=
"/
usr/
bin/sed -e 1s/^X//"
# The HP-UX ksh and POSIX shell print the target directory to stdout
# if CDPATH is set.
...
...
@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host
NWRW15
:
# Libtool was configured on host
deimos101
:
# Shell to use when invoking shell scripts.
SHELL
=
"/bin/sh"
...
...
@@ -66,12 +66,12 @@ fast_install=yes
# The host system.
host_alias
=
host
=
i686-pc
-linux-gnu
host
=
x86_64-unknown
-linux-gnu
host_os
=
linux-gnu
# The build system.
build_alias
=
build
=
i686-pc
-linux-gnu
build
=
x86_64-unknown
-linux-gnu
build_os
=
linux-gnu
# An echo program that does not interpret backslashes.
...
...
@@ -82,25 +82,22 @@ AR="ar"
AR_FLAGS
=
"cru"
# A C compiler.
LTCC
=
"
g
cc"
LTCC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpi
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# LTCC compiler flags.
LTCFLAGS
=
"-g -O2"
# A language-specific compiler.
CC
=
"
g
cc"
CC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpi
cc"
# Is the compiler the GNU C compiler?
with_gcc
=
yes
gcc_dir
=
`
gcc
-print-file-name
=
.
| /bin/sed
's,/\.$,,'
`
gcc_ver
=
`
gcc
-dumpversion
`
# An ERE matcher.
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=
"grep -E"
# The linker used to build libraries.
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"/usr/
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LD
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"/usr/
x86_64-suse-linux/bin/ld -m elf_x86_64
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LN_S
=
"ln -s"
...
...
@@ -174,7 +171,7 @@ dlopen_self=unknown
dlopen_self_static
=
unknown
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=
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-static
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link_static_flag
=
""
# Compiler flag to turn off builtin functions.
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=
" -fno-builtin"
...
...
@@ -232,11 +229,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects
=
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echo
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|
$SED
-e
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postdep_objects
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# Dependencies to place before the objects being linked to create a
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...
...
@@ -248,7 +245,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
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compiler_lib_search_path
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`
echo
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|
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compiler_lib_search_path
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deplibs_check_method
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...
...
@@ -328,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
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...
...
@@ -6763,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host
NWRW15
:
# Libtool was configured on host
deimos101
:
# Shell to use when invoking shell scripts.
SHELL
=
"/bin/sh"
...
...
@@ -6785,12 +6782,12 @@ fast_install=yes
# The host system.
host_alias
=
host
=
i686-pc
-linux-gnu
host
=
x86_64-unknown
-linux-gnu
host_os
=
linux-gnu
# The build system.
build_alias
=
build
=
i686-pc
-linux-gnu
build
=
x86_64-unknown
-linux-gnu
build_os
=
linux-gnu
# An echo program that does not interpret backslashes.
...
...
@@ -6801,25 +6798,22 @@ AR="ar"
AR_FLAGS
=
"cru"
# A C compiler.
LTCC
=
"
g
cc"
LTCC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpi
cc"
# LTCC compiler flags.
LTCFLAGS
=
"-g -O2"
# A language-specific compiler.
CC
=
"
g++
"
CC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC
"
# Is the compiler the GNU C compiler?
with_gcc
=
yes
gcc_dir
=
`
gcc
-print-file-name
=
.
| /bin/sed
's,/\.$,,'
`
gcc_ver
=
`
gcc
-dumpversion
`
# An ERE matcher.
EGREP
=
"grep -E"
# The linker used to build libraries.
LD
=
"/usr/
bin/ld
"
LD
=
"/usr/
x86_64-suse-linux/bin/ld -m elf_x86_64
"
# Whether we need hard or soft links.
LN_S
=
"ln -s"
...
...
@@ -6893,7 +6887,7 @@ dlopen_self=unknown
dlopen_self_static
=
unknown
# Compiler flag to prevent dynamic linking.
link_static_flag
=
"
-static
"
link_static_flag
=
""
# Compiler flag to turn off builtin functions.
no_builtin_flag
=
" -fno-builtin"
...
...
@@ -6948,11 +6942,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects
=
`
echo
"/usr/lib/gcc/
i386-redhat
-linux/4.1.2/../../../crti.o /usr/lib/gcc/
i386-redhat
-linux/4.1.2/crtbeginS.o"
|
$SED
-e
"s@
${
gcc_dir
}
@
\$
{gcc_dir}@g;s@
${
gcc_ver
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@
\$
{gcc_ver}@g"
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predep_objects
=
"/usr/lib
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/gcc/
x86_64-suse
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../lib64/
crti.o /usr/lib
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/gcc/
x86_64-suse
-linux/4.1.2/crtbeginS.o"
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects
=
`
echo
"/usr/lib/gcc/
i386-redhat
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i386-redhat
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crtn.o"
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../lib64/crtn.o"
# Dependencies to place before the objects being linked to create a
# shared library.
...
...
@@ -6960,11 +6954,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps
=
"-lstdc++ -lm -lgcc_s -lc -lgcc_s"
postdeps
=
"
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl
-lstdc++ -lm -lgcc_s
-lpthread
-lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path
=
`
echo
"
-L/usr/lib/gcc/
i386-redhat
-linux/4.1.2 -L/usr/lib/gcc/
i386-redhat
-linux/4.1.2
-L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.."
|
$SED
-e
"s@
${
gcc_dir
}
@
\$
{gcc_dir}@g;s@
${
gcc_ver
}
@
\$
{gcc_ver}@g"
`
compiler_lib_search_path
=
"-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib
-L/usr/lib
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/gcc/
x86_64-suse
-linux/4.1.2 -L/usr/lib
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/gcc/
x86_64-suse
-linux/4.1.2
/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# Method to check whether dependent libraries are shared objects.
deplibs_check_method
=
"pass_all"
...
...
@@ -7044,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs
=
unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec
=
`
echo
" /usr/lib/gcc/
i386-redhat
-linux/4.1.2/ /usr/lib/gcc/
i386-redhat
-linux/4.1.2/ /usr/lib/gcc/
i386-redhat
-linux/4.1.2/../../../../
i386-redhat-linux/lib/i386-redhat
-linux/4.1.2/ /usr/lib/gcc/
i386-redhat
-linux/4.1.2/../../../../
i386-redhat
-linux/lib/ /usr/lib/gcc/
i386-redhat
-linux/4.1.2/../../../
i386-redhat
-linux/4.1.2/ /usr/lib/gcc/
i386-redhat
-linux/4.1.2/../../../
/lib/i386-redhat
-linux/4.1.2/ /lib/ /usr/lib/
i386-redhat
-linux/4.1.2/ /usr/lib/
"
|
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# Run-time system search path for libraries
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=
"/lib /usr/lib /usr/
lib/octave-2.9.9 /usr/lib/qt-
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3
/lib
/usr/lib/qt4/lib
"
sys_lib_dlsearch_path_spec
=
"/lib /usr/lib /usr/
X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale
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# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path
=
""
...
...
@@ -7071,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host
NWRW15
:
# Libtool was configured on host
deimos101
:
# Shell to use when invoking shell scripts.
SHELL
=
"/bin/sh"
...
...
@@ -7093,12 +7087,12 @@ fast_install=yes
# The host system.
host_alias
=
host
=
i686-pc
-linux-gnu
host
=
x86_64-unknown
-linux-gnu
host_os
=
linux-gnu
# The build system.
build_alias
=
build
=
i686-pc
-linux-gnu
build
=
x86_64-unknown
-linux-gnu
build_os
=
linux-gnu
# An echo program that does not interpret backslashes.
...
...
@@ -7109,7 +7103,7 @@ AR="ar"
AR_FLAGS
=
"cru"
# A C compiler.
LTCC
=
"
g
cc"
LTCC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpi
cc"
# LTCC compiler flags.
LTCFLAGS
=
"-g -O2"
...
...
@@ -7118,16 +7112,13 @@ LTCFLAGS="-g -O2"
CC
=
"g77"
# Is the compiler the GNU C compiler?
with_gcc
=
yes
gcc_dir
=
`
gcc
-print-file-name
=
.
| /bin/sed
's,/\.$,,'
`
gcc_ver
=
`
gcc
-dumpversion
`
with_gcc
=
# An ERE matcher.
EGREP
=
"grep -E"
# The linker used to build libraries.
LD
=
"/usr/
bin/ld
"
LD
=
"/usr/
x86_64-suse-linux/bin/ld -m elf_x86_64
"
# Whether we need hard or soft links.
LN_S
=
"ln -s"
...
...
@@ -7259,11 +7250,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects
=
`
echo
""
|
$SED
-e
"s@
${
gcc_dir
}
@
\$
{gcc_dir}@g;s@
${
gcc_ver
}
@
\$
{gcc_ver}@g"
`
predep_objects
=
""
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects
=
`
echo
""
|
$SED
-e
"s@
${
gcc_dir
}
@
\$
{gcc_dir}@g;s@
${
gcc_ver
}
@
\$
{gcc_ver}@g"
`
postdep_objects
=
""
# Dependencies to place before the objects being linked to create a
# shared library.
...
...
@@ -7275,7 +7266,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path
=
`
echo
""
|
$SED
-e
"s@
${
gcc_dir
}
@
\$
{gcc_dir}@g;s@
${
gcc_ver
}
@
\$
{gcc_ver}@g"
`
compiler_lib_search_path
=
""
# Method to check whether dependent libraries are shared objects.
deplibs_check_method
=
"pass_all"
...
...
@@ -7355,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs
=
unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec
=
`
echo
" /usr/lib/gcc
/i386-redhat
-linux/3.
4.6
/ /usr/lib/gcc/
i386-redhat
-linux/3.
4.6
/ /usr/lib/gcc
/i386-redhat
-linux/3.
4.6
/../../../../
i386-redhat-linux/lib/i386-redhat
-linux/3.
4.6
/ /usr/lib/gcc
/i386-redhat
-linux/3.
4.6
/../../../../
i386-redhat
-linux/lib/ /usr/lib/gcc
/i386-redhat
-linux/3.
4.6
/../../../
i386-redhat
-linux/3.
4.6
/ /usr/lib/gcc
/i386-redhat
-linux/3.
4.6
/../../../ /lib/
i386-redhat
-linux/3.
4.6
/ /lib/ /usr/lib/
i386-redhat
-linux/3.
4.6
/ /usr/lib/"
|
$SED
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@
\$
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${
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@
\$
{gcc_ver}@g"
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sys_lib_search_path_spec
=
" /usr/lib
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/ /usr/lib/gcc/
x86_64-suse
-linux/3.
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/ /usr/lib
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-linux/3.
3.5
/../../../../
x86_64-suse-linux/lib/x86_64-suse
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/ /usr/lib
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/ /usr/lib
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/../../../ /lib/
x86_64-suse
-linux/3.
3.5
/ /lib/ /usr/lib/
x86_64-suse
-linux/3.
3.5
/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec
=
"/lib /usr/lib /usr/
lib/octave-2.9.9 /usr/lib/qt-
3.
3
/lib
/usr/lib/qt4/lib
"
sys_lib_dlsearch_path_spec
=
"/lib /usr/lib /usr/
X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale
3.
0
/lib
/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso
"
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path
=
""
...
...
AMDiS/src/BoundaryManager.cc
View file @
73afa800
...
...
@@ -57,6 +57,7 @@ namespace AMDiS {
std
::
vector
<
DegreeOfFreedom
>
&
dofVec
=
dofIndices
[
omp_get_thread_num
()];
const
BasisFunction
*
basisFcts
=
feSpace
->
getBasisFcts
();
int
nBasFcts
=
basisFcts
->
getNumber
();
dofVec
.
resize
(
nBasFcts
);
// get boundaries of all DOFs
BoundaryType
*
localBound
=
localBounds
[
omp_get_thread_num
()];
...
...
@@ -88,7 +89,8 @@ namespace AMDiS {
std
::
vector
<
DegreeOfFreedom
>
&
dofVec
=
dofIndices
[
omp_get_thread_num
()];
const
BasisFunction
*
basisFcts
=
feSpace
->
getBasisFcts
();
int
nBasFcts
=
basisFcts
->
getNumber
();
dofVec
.
resize
(
nBasFcts
);
// get boundaries of all DOFs
BoundaryType
*
localBound
=
localBounds
[
omp_get_thread_num
()];
basisFcts
->
getBound
(
elInfo
,
localBound
);
...
...
AMDiS/src/ParallelDomainBase.cc
View file @
73afa800
...
...
@@ -798,8 +798,6 @@ namespace AMDiS {
// === Because the mesh has been changed, update the DOF numbering and mappings. ===
updateLocalGlobalNumbering
();
exit
(
0
);
}
...
...
@@ -816,10 +814,6 @@ namespace AMDiS {
boundIt
!=
it
->
second
.
end
();
++
boundIt
)
{
MeshStructure
elCode
;
elCode
.
init
(
boundIt
->
rankObj
);
// elCode.init(boundIt->rankObj.el,
// boundIt->rankObj.ithObj,
// boundIt->rankObj.elType,
// boundIt->rankObj.reverseMode);
sendCodes
[
it
->
first
].
push_back
(
elCode
);
}
}
...
...
@@ -844,10 +838,6 @@ namespace AMDiS {
MeshStructure
elCode
;
elCode
.
init
(
boundIt
->
rankObj
);
// elCode.init(boundIt->rankObj.el,
// boundIt->rankObj.ithObj,
// boundIt->rankObj.elType,
// boundIt->rankObj.reverseMode);
if
(
elCode
.
getCode
()
!=
recvCodes
[
i
].
getCode
())
{
TEST_EXIT_DBG
(
refineManager
)(
"Refinement manager is not set correctly!
\n
"
);
...
...
@@ -1526,10 +1516,10 @@ namespace AMDiS {
boundIt
->
rankObj
.
elType
,
dofs
,
boundIt
->
rankObj
.
reverseMode
);
//
boundIt->rankObj.el->getNonVertexDofs(feSpace,
//
boundIt->rankObj.ithObj,
//
boundIt->rankObj.elType,
//
dofs);
boundIt
->
rankObj
.
el
->
getNonVertexDofs
(
feSpace
,
boundIt
->
rankObj
.
ithObj
,
boundIt
->
rankObj
.
elType
,
dofs
);
for
(
int
i
=
0
;
i
<
static_cast
<
int
>
(
dofs
.
size
());
i
++
)
dofsToSend
.
push_back
(
dofs
[
i
]);
...
...
@@ -1545,10 +1535,10 @@ namespace AMDiS {
boundIt
!=
it
->
second
.
end
();
++
boundIt
)
{
DofContainer
dofs
;
//
boundIt->rankObj.el->getNonVertexDofs(feSpace,
//
boundIt->rankObj.ithObj,
//
boundIt->rankObj.elType,
//
dofs);
boundIt
->
rankObj
.
el
->
getNonVertexDofs
(
feSpace
,
boundIt
->
rankObj
.
ithObj
,
boundIt
->
rankObj
.
elType
,
dofs
);
boundIt
->
rankObj
.
el
->
getVertexDofs
(
feSpace
,
boundIt
->
rankObj
.
ithObj
,
boundIt
->
rankObj
.
elType
,
...
...
AMDiS/src/Tetrahedron.cc
View file @
73afa800
...
...
@@ -180,13 +180,6 @@ namespace AMDiS {
{
FUNCNAME
(
"Tetrahedron::getVertexDofs()"
);
bool
p
=
false
;
// if (MPI::COMM_WORLD.Get_rank() == 0)
// p = true;
if
(
p
)
MSG
(
"GET-VD: idx=%d ith=%d type=%d
\n
"
,
this
->
getIndex
(),
ith
,
elType
);
if
(
parentVertices
)
{
switch
(
ith
)
{
case
0
:
...
...
@@ -245,9 +238,6 @@ namespace AMDiS {
int
c1
=
sideOfChild
[
elType
][
0
][
ith
];
int
c2
=
sideOfChild
[
elType
][
1
][
ith
];
if
(
p
)
MSG
(
"GO TO CHILD WITH SIDE %d %d
\n
"
,
c1
,
c2
);
if
(
c1
==
-
1
||
c2
==
-
1
)
{
std
::
cout
<<
"ERROR 3 WITH elType = "
<<
elType
<<
std
::
endl
;
exit
(
0
);
...
...
@@ -262,9 +252,6 @@ namespace AMDiS {
dofs
.
push_back
(
child
[
0
]
->
getDOF
(
3
));
child
[
1
]
->
getVertexDofs
(
feSpace
,
c2
,
(
elType
+
1
)
%
3
,
dofs
,
false
);
}
}
else
{
if
(
p
)
MSG
(
"NO CHILD
\n
"
);
}
}
break
;
...
...
@@ -296,8 +283,10 @@ namespace AMDiS {
elDofIter
.
reset
(
this
);
do
{
if
(
elDofIter
.
getCurrentPos
()
==
2
&&
elDofIter
.
getCurrentElementPos
()
==
ith
)
dofs
.
push_back
(
elDofIter
.
getDofPtr
());
elDofIter
.
getCurrentElementPos
()
==
ith
)
{
ERROR_EXIT
(
"Check this, if it will really work!
\n
"
);
dofs
.
push_back
(
elDofIter
.
getDofPtr
());
}
}
while
(
elDofIter
.
next
());
}
}
...
...
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