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Commit 7ada0dba authored by Praetorius, Simon's avatar Praetorius, Simon
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Helpers: static method -> namespace methods

parent 8ef90e57
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Showing with 190 additions and 245 deletions
extensions/GeometryTools.cc
View file @ 7ada0dba
......@@ -8,39 +8,6 @@ namespace meshconv {
// ## General ##
// ###############
//----------------------------------------< coordinate_extrema_triangle >
//returns in 'small_coord' the smallest coordinate of 'sm' in the given dimension and in 'big_coord' the
//biggest coordinate in the given dimension. Note: 'sm' has to be a triangle in a 2d or 3d world.
// void coordinate_extrema_triangle(mesh &m, element &sm, long dimension, double &small_coord,
// double &big_coord){
// if(m.vertices[sm.v[0]][dimension] <= m.vertices[sm.v[1]][dimension]){
// if(m.vertices[sm.v[0]][dimension] <= m.vertices[sm.v[2]][dimension]){
// small_coord = m.vertices[sm.v[0]][dimension];
// if(m.vertices[sm.v[1]][dimension] >= m.vertices[sm.v[2]][dimension])
// big_coord = m.vertices[sm.v[1]][dimension];
// else
// big_coord = m.vertices[sm.v[2]][dimension];
// }
// else{
// small_coord = m.vertices[sm.v[2]][dimension];
// big_coord = m.vertices[sm.v[1]][dimension];
// }
// }
// else{
// if(m.vertices[sm.v[1]][dimension] <= m.vertices[sm.v[2]][dimension]){
// small_coord = m.vertices[sm.v[1]][dimension];
// if(m.vertices[sm.v[0]][dimension] >= m.vertices[sm.v[2]][dimension])
// big_coord = m.vertices[sm.v[0]][dimension];
// else
// big_coord = m.vertices[sm.v[2]][dimension];
// }
// else{
// small_coord = m.vertices[sm.v[2]][dimension];
// big_coord = m.vertices[sm.v[0]][dimension];
// }
// }
// }
//----------------------------------------< solve_determinant4 >
double solve_determinant4(double x11, double x12, double x13, double x14,
double x21, double x22, double x23, double x24,
......@@ -447,6 +414,11 @@ bool point_in_polygon(double point[], const std::vector<AMDiS::WorldVector<doubl
return inside;
}
//----------------------------------------< triangle_area_2d >
double triangle_area_2d(double tri0[], double tri1[], double tri2[]){
return 0.5 * abs((tri1[0] - tri0[0]) * (tri2[1] - tri0[1]) - (tri2[0] - tri0[0]) * (tri1[1] - tri0[1]));
}
// #################
// ## 3D Worlds ##
// #################
......@@ -1500,4 +1472,14 @@ double distance_point_triangle_3d(double point[], double tri0[], double tri1[],
return distance;
}
double volume_tetraeder(double tet0[], double tet1[], double tet2[], double tet3[]){
mtl::dense2d<double> A(3,3);
A(0,0) = tet1[0]-tet0[0]; A(0,1) = tet2[0]-tet0[0]; A(0,2) = tet3[0]-tet0[0];
A(1,0) = tet1[1]-tet0[1]; A(1,1) = tet2[1]-tet0[1]; A(1,2) = tet3[1]-tet0[1];
A(2,0) = tet1[2]-tet0[2]; A(2,1) = tet2[2]-tet0[2]; A(2,2) = tet3[2]-tet0[2];
return abs(Helpers::determinant(A))/6.0;
}
}
extensions/GeometryTools.h
View file @ 7ada0dba
......@@ -93,6 +93,9 @@ double distance_point_triangle_2d(double point[], double tri0[], double tri1[],
bool point_in_polygon(double point[], const std::vector<AMDiS::WorldVector<double> > &vertices);
//----------------------------------------< triangle_area_2d >
double triangle_area_2d(double tri0[], double tri1[], double tri2[]);
// #################
// ## 3D Worlds ##
// #################
......@@ -206,45 +209,13 @@ double distance_point_box_3d(double point[], double min_corner[], double max_cor
//calculates the distance between a given 'point' and the triangle given by 'tri0', 'tri1', 'tri2'.
double distance_point_triangle_3d(double point[], double tri0[], double tri1[], double tri2[]);
template<int dow>
void coordinate_transform(double x[], double shift[], double scale[], double alpha=0.0, double beta=0.0)
{
mtl::dense2D<double> Rx(dow,dow),Ry(dow,dow),T(dow,dow),S(dow,dow);
Rx = 1.0;
Ry = 1.0;
S = 1.0;
if (dow == 3) {
Rx(1,1) = cos(alpha); Rx(1,2) = -sin(alpha);
Rx(2,1) = sin(alpha); Rx(2,2) = cos(alpha);
Ry(0,0) = cos(beta); Ry(0,2) = sin(beta);
Ry(2,0) = -sin(beta); Ry(2,2) = cos(beta);
S(0,0) = scale[0]; S(1,1) = scale[1]; S(2,2) = scale[2];
} else if (dow == 2) {
Rx(0,0) = cos(alpha); Rx(0,1) = -sin(alpha);
Rx(1,0) = sin(alpha); Rx(1,1) = cos(alpha);
Ry = 1.0;
S(0,0) = scale[0]; S(1,1) = scale[1];
} else {
S(0,0) = scale[0];
}
T = Ry*Rx*S;
mtl::dense_vector<double> coords(dow);
for (int i = 0; i < dow; i++)
coords[i] = x[i];
void coordinate_transform(double x[], double shift[], double scale[], double alpha = 0.0, double beta = 0.0);
coords = T*coords;
double volume_tetraeder(double tet0[], double tet1[], double tet2[], double tet3[]);
for (int i = 0; i < dow; i++)
x[i] = coords[i]+shift[i];
}
} // end namespace meshconv
}
#include "GeometryTools.hh"
#endif // GEOMETRY_TOOLBOX_H
extensions/Helpers.h
View file @ 7ada0dba
......@@ -22,44 +22,48 @@
#include <stdarg.h>
#include "VectorOperations.h"
#include "Views.h"
#define TEST_WARNING(test) if ((test));else WARNING
using namespace std;
using namespace AMDiS;
static long random_seed_initial_value=0;
static long random_seed_initial_value = 0;
class Helpers {
public:
namespace Helpers {
/// math routines
/// ==============
static double cint(double x){
inline double cint(double x) {
double intpart;
if (modf(x,&intpart)>=.5)
return x>=0?ceil(x):floor(x);
if (modf(x, &intpart) >= 0.5)
return x >=0 ? ceil(x) : floor(x);
else
return x<0?ceil(x):floor(x);
return x < 0 ? ceil(x) : floor(x);
}
static double round(double r, double places){
double off= pow(10.0, places);
inline double round (double r, double places) {
double off = pow(10.0, places);
return cint(r*off)/off;
}
static bool isNumber(double val) { return !isnan(val) && !isinf(val); };
static double signum(double val, double tol=1.e-10) { return (val>tol?1.0:(val<-tol?-1.0:0.0)); }
static int signum(int val) { return (val>0?1:(val<0?-1:0)); }
static int signum(bool val) { return (val?1:-1); }
static int toInt(bool val) { return (val?1:0); }
inline double signum(double val, double tol = DBL_TOL) { return val > tol ? 1.0 : (val < -tol ? -1.0 : 0.0); }
inline int signum(int val) { return val > 0 ? 1 : (val < 0 ? -1 : 0); }
inline int signum(bool val) { return val ? 1 : -1; }
inline int toInt(bool val) { return val ? 1 : 0; }
inline bool isNumber(double val) { return !isnan(val) && !isinf(val); }
inline bool toBool(double val, double tol = DBL_TOL) { return val > tol || val < -tol ? true : false; }
inline bool isPositiv(double val, double tol = DBL_TOL) { return val > -tol; }
inline bool isStrictPositiv(double val, double tol = DBL_TOL) { return val > tol; }
/// routines for conversion to string
/// =================================
template<typename T>
static std::string toString(const T &value, ios_base::fmtflags flag= ios_base::scientific)
inline std::string toString(const T &value,
ios_base::fmtflags flag = ios_base::scientific)
{
std::stringstream ss;
ss.setf(flag);
......@@ -67,15 +71,17 @@ public:
if (!(ss<<value))
throw(std::runtime_error("toString() not possible"));
return ss.str();
};
}
static std::string toString(const int &value)
inline std::string toString(const int &value)
{
return boost::lexical_cast<std::string>(value);
};
}
template<typename T>
static std::string toString(const WorldVector<T> &value, bool brackets= true, ios_base::fmtflags flag= ios_base::scientific)
inline std::string toString(const WorldVector<T> &value,
bool brackets = true,
ios_base::fmtflags flag = ios_base::scientific)
{
std::stringstream ss;
if (brackets) ss<<"[";
......@@ -86,10 +92,12 @@ public:
if (brackets) ss<<"]";
return ss.str();
};
}
template<typename T>
static std::string toString(const std::vector<T> &vec, bool brackets= true, ios_base::fmtflags flag= ios_base::scientific)
inline std::string toString(const std::vector<T> &vec,
bool brackets = true,
ios_base::fmtflags flag = ios_base::scientific)
{
std::stringstream ss;
if (brackets) ss<<"[";
......@@ -101,18 +109,18 @@ public:
}
if (brackets) ss<<"]";
return ss.str();
};
}
template<class T>
static T fromString(const std::string& s)
inline T fromString(const std::string& s)
{
std::istringstream stream(s);
T t;
stream >> t;
return t;
};
}
static std::string fillString(int length, char c, int numValues, ...)
inline std::string fillString(int length, char c, int numValues, ...)
{
va_list values;
int value;
......@@ -132,10 +140,10 @@ public:
va_end(values);
return std::string(len, c);
};
}
// process printable string of memory
static std::string memoryToString(double mem, int startIdx=0) {
inline std::string memoryToString(double mem, int startIdx = 0) {
int idx = startIdx;
double mem_ = mem;
while (mem_/1024.0 > 1.0) {
......@@ -144,63 +152,53 @@ public:
}
std::string result = toString(mem_)+" "+(idx==0?"B":(idx==1?"KB":(idx==2?"MB":"GB")));
return result;
};
}
/// some mesh routines
/// ===========================
static void transformMesh(Mesh *mesh, WorldVector<double> scale, WorldVector<double> shift, WorldVector<double> rotate);
void transformMesh(Mesh *mesh, WorldVector<double> scale, WorldVector<double> shift, WorldVector<double> rotate);
static void scaleMesh(std::vector<Mesh*> meshes, WorldVector<double> scale);
void scaleMesh(std::vector<Mesh*> meshes, WorldVector<double> scale);
// scale and shift by different values in all directions
static void scaleMesh(Mesh *mesh, WorldVector<double> shift, WorldVector<double> scale);
void scaleMesh(Mesh *mesh, WorldVector<double> shift, WorldVector<double> scale);
// scale by different values in all directions
static void scaleMesh(Mesh *mesh, WorldVector<double> scale);
void scaleMesh(Mesh *mesh, WorldVector<double> scale);
// scale and shift by the same values in all directions
static void scaleMesh(Mesh *mesh, double shift=0.0, double scale=1.0);
void scaleMesh(Mesh *mesh, double shift=0.0, double scale=1.0);
/// calculate the dimension of a mesh
static WorldVector<double> getMeshDimension(Mesh *mesh);
static void getMeshDimension(Mesh *mesh, WorldVector<double> &min_corner, WorldVector<double> &max_corner);
WorldVector<double> getMeshDimension(Mesh *mesh);
void getMeshDimension(Mesh *mesh, WorldVector<double> &min_corner, WorldVector<double> &max_corner);
/// read DOFVector from AMDiS .dat-files
static void read_dof_vector(const std::string file, DOFVector<double> *dofvec, long size);
/// copy DOFVectors that live on different meshes
static void copyDOF(std::vector<DOFVector<double>*> dof1, std::vector<DOFVector<double>*> dof2, WorldVector<double> shift, double fillValue = 0.0);
static void copyDOF(DOFVector<double>* dof1, DOFVector<double>* dof2) {
WorldVector<double> shift; shift.set(0.0);
std::vector<DOFVector<double>*> dof1Vec; dof1Vec.push_back(dof1);
std::vector<DOFVector<double>*> dof2Vec; dof2Vec.push_back(dof2);
copyDOF(dof1Vec, dof2Vec, shift);
};
void read_dof_vector(const std::string file, DOFVector<double> *dofvec, long size);
/// some linear algebra methods
/// ===========================
static double determinant(mtl::dense2D<double> &A) // only for 3x3 - matrices
inline double determinant(mtl::dense2D<double> &A) // only for 3x3 - matrices
{
if(num_rows(A)==3 && num_cols(A)==3) {
double det = A(0,0)*A(1,1)*A(2,2)+A(0,1)*A(1,2)*A(2,0)+A(0,2)*A(1,0)*A(2,1);
return det-(A(0,2)*A(1,1)*A(2,0)+A(0,1)*A(1,0)*A(2,2)+A(0,0)*A(1,2)*A(2,1));
}
return 1.0;
};
}
static double determinant(WorldMatrix<double> &A) // only for 3x3 - matrices
inline double determinant(WorldMatrix<double> &A) // only for 3x3 - matrices
{
if(A.getNumRows()==3 && A.getNumCols()==3) {
double det = A[0][0]*A[1][1]*A[2][2]+A[0][1]*A[1][2]*A[2][0]+A[0][2]*A[1][0]*A[2][1];
return det-(A[0][2]*A[1][1]*A[2][0]+A[0][1]*A[1][0]*A[2][2]+A[0][0]*A[1][2]*A[2][1]);
}
return 1.0;
};
}
/// inverse power method to find minimal eigenvalue of matrix A and appropriate eigenvector x, using m iterations
template <class LinearSolver, class Matrix, class EigenVector>
static double inverse_iteration(LinearSolver& solver, const Matrix& A, EigenVector& x, int m)
inline double inverse_iteration(LinearSolver& solver, const Matrix& A, EigenVector& x, int m)
{ FUNCNAME("Helpers::inverse_iteration()");
EigenVector y( size(x) ), res( size(x) );
......@@ -212,20 +210,21 @@ public:
solver.setMultipleRhs(true);
for (int i = 0; i < m; ++i) {
solver.solveSystem(A, y, x ); // solve Ay=x --> y
lambda_old=lambda;
lambda = dot(y,x)/dot(y,y);
relErr = abs((lambda-lambda_old)/lambda);
if(relErr<1.e-5) break;
lambda_old = lambda;
lambda = dot(y,x) / dot(y,y);
relErr = abs((lambda - lambda_old) / lambda);
if (relErr < 1.e-5)
break;
x = y / two_norm(y);
}
solver.setMultipleRhs(false);
return lambda ;
};
return lambda;
}
/// calculate approximation to condition number of matrix A using the OEMSolver solver
template <class LinearSolver, class Matrix>
static double condition(LinearSolver& solver, const Matrix& A, int m=10)
inline double condition (LinearSolver& solver, const Matrix& A, int m=10)
{ FUNCNAME("Helpers::condition()");
mtl::dense_vector<double> x(num_rows(A)), y(num_rows(A));
......@@ -236,22 +235,40 @@ public:
x /= two_norm(x);
for (int i = 0; i < m; ++i) {
y = A * x;
lambda_old=lambda;
lambda_old = lambda;
lambda = mtl::dot(y,x);
relErr = abs((lambda-lambda_old)/lambda);
if(relErr<1.e-5) break;
if (relErr < 1.e-5)
break;
x = y / two_norm(y) ;
}
result1 = std::abs(lambda / inverse_iteration(solver, A, x, m));
return result1;
};
}
/// interpolate values of DOFVector along line from (x1,y1) -> (x2,y1) with nPoints points
template<typename Container>
static void interpolOverLine(const Container &vec,
inline void interpolOverLine(const Container &vec,
double x1, double y1, double x2, double y2,
int nPoints,
std::vector<WorldVector<double> > &x, std::vector<double> &y);
std::vector<WorldVector<double> > &x, std::vector<double> &y)
{ FUNCNAME("Helpers::interpolOverLine()");
WorldVector<double> p;
if (nPoints <= 1)
throw(std::runtime_error("Zu wenig Punkte fuer eine Interpolation!"));
for (int i = 0; i < nPoints; ++i) {
double lambda = static_cast<double>(i)/static_cast<double>(nPoints - 1.0);
p[0] = lambda*x2 + (1.0-lambda)*x1;
p[1] = lambda*y2 + (1.0-lambda)*y1;
double value = evalAtPoint(vec, p);
x.push_back(p);
y.push_back(value);
}
}
/// calculate maxima of DOFVector along line, using interpolOverLine
static void calcMaxOnXAxis(DOFVector<double> *rho, std::vector<std::pair<WorldVector<double>, double> > &maxima);
......@@ -269,16 +286,16 @@ public:
/// misc routines
/// =============
static void plot(std::vector<double> &values, int numRows=7, int numCols=20, std::string symbol="*");
void plot(std::vector<double> &values, int numRows = 7, int numCols = 20, std::string symbol = "*");
// process_mem_usage(double &, double &) - takes two doubles by reference,
// attempts to read the system-dependent data for a process' virtual memory
// size and resident set size, and return the results in KB.
//
// On failure, returns 0.0, 0.0
static void process_mem_usage(double& vm_usage, double& resident_set);
void process_mem_usage(double& vm_usage, double& resident_set);
static long getMicroTimestamp() {
inline long getMicroTimestamp() {
using namespace boost::posix_time;
ptime t0(min_date_time);
ptime now = microsec_clock::local_time();
......@@ -286,7 +303,7 @@ public:
return td.total_microseconds();
};
static long getRandomSeed(int param=0) {
inline long getRandomSeed(int param = 0) {
using namespace boost::posix_time;
ptime t0(min_date_time);
ptime now = microsec_clock::local_time();
......@@ -295,96 +312,97 @@ public:
long value1 = clock();
long value2 = random_seed_initial_value++;
return value0+value1+value2+param;
return value0 + value1 + value2 + param;
};
};
/** \ingroup DOFAdministration
* \brief
* Implements a DOFIterator for a DOFIndexed<T> object
*/
template<typename T>
class DOFConstIterator : public DOFIteratorBase
{
public:
/// Constructs a DOFIterator for cont of type t
DOFConstIterator(const DOFIndexed<T> *obj, DOFIteratorType t)
: DOFIteratorBase(dynamic_cast<DOFAdmin*>(obj->getFeSpace()->getAdmin()), t),
iteratedObject(obj)
{}
/// Constructs a DOFIterator for cont of type t
DOFConstIterator(DOFAdmin *admin,
const DOFIndexed<T> *obj,
DOFIteratorType t)
: DOFIteratorBase(admin, t),
iteratedObject(obj)
{}
/// Dereference operator
inline const T& operator*()
{
return *it;
}
/// Dereference operator
inline const T* operator->()
{
return &(*it);
}
} // end namespace Helpers
inline bool operator!=(const DOFIterator<T>& rhs)
namespace AMDiS {
/** \ingroup DOFAdministration
* \brief
* Implements a DOFIterator for a DOFIndexed<T> object
*/
template<typename T>
class DOFConstIterator : public DOFIteratorBase
{
if (this->iteratedObject != rhs.iteratedObject)
return true;
public:
/// Constructs a DOFIterator for cont of type t
DOFConstIterator(const DOFIndexed<T> *obj, DOFIteratorType t)
: DOFIteratorBase(dynamic_cast<DOFAdmin*>(obj->getFeSpace()->getAdmin()), t),
iteratedObject(obj)
{}
/// Constructs a DOFIterator for cont of type t
DOFConstIterator(DOFAdmin *admin,
const DOFIndexed<T> *obj,
DOFIteratorType t)
: DOFIteratorBase(admin, t),
iteratedObject(obj)
{}
/// Dereference operator
inline const T& operator*()
{
return *it;
}
if (this->it != rhs.it)
return true;
/// Dereference operator
inline const T* operator->()
{
return &(*it);
}
return false;
}
inline bool operator!=(const DOFIterator<T>& rhs)
{
if (this->iteratedObject != rhs.iteratedObject)
return true;
inline bool operator==(const DOFIterator<T>& rhs)
{
return !(this->operator==(rhs));
}
if (this->it != rhs.it)
return true;
protected:
/// Implementation of DOFIteratorBase::goToBeginOfIteratedObject()
inline void goToBeginOfIteratedObject()
{
it = iteratedObject->begin();
}
return false;
}
/// Implementation of DOFIteratorBase::goToEndOfIteratedObject()
inline void goToEndOfIteratedObject()
{
it = iteratedObject->end();
}
inline bool operator==(const DOFIterator<T>& rhs)
{
return !(this->operator==(rhs));
}
/// Implementation of DOFIteratorBase::incObjectIterator()
inline void incObjectIterator()
{
++it;
}
protected:
/// Implementation of DOFIteratorBase::goToBeginOfIteratedObject()
inline void goToBeginOfIteratedObject()
{
it = iteratedObject->begin();
}
/// Implementation of DOFIteratorBase::incObjectIterator()
inline void decObjectIterator()
{
--it;
}
/// Implementation of DOFIteratorBase::goToEndOfIteratedObject()
inline void goToEndOfIteratedObject()
{
it = iteratedObject->end();
}
protected:
/// Object that is iterated
const DOFIndexed<T> *iteratedObject;
/// Implementation of DOFIteratorBase::incObjectIterator()
inline void incObjectIterator()
{
++it;
}
/// Iterator for \ref iteratedObject
typename std::vector<T>::const_iterator it;
};
/// Implementation of DOFIteratorBase::incObjectIterator()