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Commit 831c4c20 authored by Praetorius, Simon's avatar Praetorius, Simon
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some error corrections

parent 7287b5b1
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Showing with 116 additions and 88 deletions
AMDiS/src/DOFVector.cc
View file @ 831c4c20
......@@ -68,10 +68,9 @@ namespace AMDiS {
template<>
const double DOFVector<double>::evalAtPoint(WorldVector<double> &p,
ElInfo *oldElInfo) const
const double& DOFVector<double>::evalAtPoint(WorldVector<double> &p, ElInfo *oldElInfo, double* values) const
{
FUNCNAME("DOFVector<double>::evalAtPoint()");
FUNCNAME("DOFVector<double>::evalAtCoords()");
Mesh *mesh = feSpace->getMesh();
const BasisFunction *basFcts = feSpace->getBasisFcts();
......@@ -79,7 +78,7 @@ namespace AMDiS {
int dim = mesh->getDim();
int nBasFcts = basFcts->getNumber();
std::vector<DegreeOfFreedom> localIndices(nBasFcts);
DegreeOfFreedom *localIndices = new DegreeOfFreedom[nBasFcts];
DimVec<double> lambda(dim, NO_INIT);
ElInfo *elInfo = mesh->createNewElInfo();
......@@ -87,8 +86,7 @@ namespace AMDiS {
bool inside = false;
if (oldElInfo && oldElInfo->getMacroElement()) {
inside = mesh->findElInfoAtPoint(p, elInfo, lambda,
oldElInfo->getMacroElement(), NULL, NULL);
inside = mesh->findElInfoAtPoint(p, elInfo, lambda, oldElInfo->getMacroElement(), NULL, NULL);
delete oldElInfo;
} else
inside = mesh->findElInfoAtPoint(p, elInfo, lambda, NULL, NULL, NULL);
......@@ -97,8 +95,7 @@ namespace AMDiS {
oldElInfo = elInfo;
if (inside) {
basFcts->getLocalIndices(elInfo->getElement(), feSpace->getAdmin(),
localIndices);
basFcts->getLocalIndices(elInfo->getElement(), feSpace->getAdmin(), localIndices);
ElementVector uh(lambda.size());
for (int i = 0; i < lambda.size(); i++)
uh[i] = operator[](localIndices[i]);
......@@ -106,19 +103,20 @@ namespace AMDiS {
} else
throw(std::runtime_error("Can not eval DOFVector at point p, because point is outside geometry."));
delete [] localIndices;
if (oldElInfo == NULL)
delete elInfo;
if (values != NULL)
*values = value;
return value;
}
};
template<>
const WorldVector<double>
DOFVector<WorldVector<double> >::evalAtPoint(WorldVector<double> &p,
ElInfo *oldElInfo) const
const WorldVector<double>& DOFVector<WorldVector<double> >::evalAtPoint(WorldVector<double> &p, ElInfo *oldElInfo, WorldVector<double>* values) const
{
FUNCNAME("DOFVector<double>::evalAtPoint()");
FUNCNAME("DOFVector<double>::evalAtCoords()");
Mesh *mesh = feSpace->getMesh();
const BasisFunction *basFcts = feSpace->getBasisFcts();
......@@ -126,17 +124,18 @@ namespace AMDiS {
int dim = mesh->getDim();
int nBasFcts = basFcts->getNumber();
vector<DegreeOfFreedom> localIndices(nBasFcts);
DegreeOfFreedom *localIndices = new DegreeOfFreedom[nBasFcts];
DimVec<double> lambda(dim, NO_INIT);
ElInfo *elInfo = mesh->createNewElInfo();
WorldVector<double> value(DEFAULT_VALUE, 0.0);
static WorldVector<double> Values(DEFAULT_VALUE, 0.0);
WorldVector<double> *val = (NULL != values) ? values : &Values;
bool inside = false;
if (oldElInfo && oldElInfo->getMacroElement()) {
inside = mesh->findElInfoAtPoint(p, elInfo, lambda,
oldElInfo->getMacroElement(), NULL, NULL);
inside = mesh->findElInfoAtPoint(p, elInfo, lambda, oldElInfo->getMacroElement(), NULL, NULL);
delete oldElInfo;
} else
inside = mesh->findElInfoAtPoint(p, elInfo, lambda, NULL, NULL, NULL);
......@@ -145,20 +144,20 @@ namespace AMDiS {
oldElInfo = elInfo;
if (inside) {
basFcts->getLocalIndices(elInfo->getElement(), feSpace->getAdmin(),
localIndices);
basFcts->getLocalIndices(elInfo->getElement(), feSpace->getAdmin(), localIndices);
mtl::dense_vector<WorldVector<double> > uh(lambda.size());
for (int i = 0; i < lambda.size(); i++)
uh[i] = operator[](localIndices[i]);
value = basFcts->evalUh(lambda, uh);
*val = basFcts->evalUh(lambda, uh);
} else
throw(std::runtime_error("Can not eval DOFVector at point p, because point is outside geometry."));
delete [] localIndices;
if (oldElInfo == NULL)
delete elInfo;
return value;
}
return ((*val));
};
template<>
......@@ -911,11 +910,11 @@ namespace AMDiS {
TEST_EXIT(vecs.size()>0)("No DOFVectors provided!\n");
int deg = std::max(fct->getDegree(),
2 * vecs[0].getFeSpace()->getBasisFcts()->getDegree());
2 * vecs[0]->getFeSpace()->getBasisFcts()->getDegree());
Quadrature* quad =
Quadrature::provideQuadrature(vecs[0].getFeSpace()->getMesh()->getDim(), deg);
Quadrature::provideQuadrature(vecs[0]->getFeSpace()->getMesh()->getDim(), deg);
FastQuadrature *fastQuad =
FastQuadrature::provideFastQuadrature(vecs[0].getFeSpace()->getBasisFcts(), *quad, INIT_PHI);
FastQuadrature::provideFastQuadrature(vecs[0]->getFeSpace()->getBasisFcts(), *quad, INIT_PHI);
std::vector<mtl::dense_vector<double> > qp(vecs.size());
std::vector<double> qp_local(vecs.size());
......@@ -925,10 +924,10 @@ namespace AMDiS {
double value = 0.0;
Flag traverseFlag = Mesh::CALL_LEAF_EL | Mesh::FILL_COORDS | Mesh::FILL_DET;
TraverseStack stack;
ElInfo *elInfo = stack.traverseFirst(vec1.getFeSpace()->getMesh(), -1, traverseFlag);
ElInfo *elInfo = stack.traverseFirst(vecs[0]->getFeSpace()->getMesh(), -1, traverseFlag);
while (elInfo) {
for (size_t i = 0; i < vecs.size(); i++)
vecs[i].getVecAtQPs(elInfo, quad, fastQuad, qp[i]);
vecs[i]->getVecAtQPs(elInfo, quad, fastQuad, qp[i]);
double tmp = 0.0;
for (int iq = 0; iq < fastQuad->getNumPoints(); iq++) {
......@@ -951,7 +950,7 @@ namespace AMDiS {
double integrateGeneralGradient(const std::vector<DOFVector<double>*> &vecs,
const std::vector<DOFVector<double>*> &grds,
BinaryAbstractFunction<double, std::vector<double>, std::vector<WorldVector<double> > *fct)
BinaryAbstractFunction<double, std::vector<double>, std::vector<WorldVector<double> > > *fct)
{
FUNCNAME("integrateGeneral()");
......@@ -960,11 +959,11 @@ namespace AMDiS {
TEST_EXIT(grds.size()>0)("No DOFVectors for gradients provided!\n");
int deg = std::max(fct->getDegree(),
2 * vecs[0].getFeSpace()->getBasisFcts()->getDegree());
2 * vecs[0]->getFeSpace()->getBasisFcts()->getDegree());
Quadrature* quad =
Quadrature::provideQuadrature(vecs[0].getFeSpace()->getMesh()->getDim(), deg);
Quadrature::provideQuadrature(vecs[0]->getFeSpace()->getMesh()->getDim(), deg);
FastQuadrature *fastQuad =
FastQuadrature::provideFastQuadrature(vecs[0].getFeSpace()->getBasisFcts(), *quad, INIT_PHI);
FastQuadrature::provideFastQuadrature(vecs[0]->getFeSpace()->getBasisFcts(), *quad, INIT_PHI);
std::vector<mtl::dense_vector<double> > qp(vecs.size());
std::vector<mtl::dense_vector<WorldVector<double> > > qpGrd(vecs.size());
......@@ -978,12 +977,12 @@ namespace AMDiS {
double value = 0.0;
Flag traverseFlag = Mesh::CALL_LEAF_EL | Mesh::FILL_COORDS | Mesh::FILL_DET;
TraverseStack stack;
ElInfo *elInfo = stack.traverseFirst(vec1.getFeSpace()->getMesh(), -1, traverseFlag);
ElInfo *elInfo = stack.traverseFirst(vecs[0]->getFeSpace()->getMesh(), -1, traverseFlag);
while (elInfo) {
for (size_t i = 0; i < vecs.size(); i++)
vecs[i].getVecAtQPs(elInfo, quad, fastQuad, qp[i]);
vecs[i]->getVecAtQPs(elInfo, quad, fastQuad, qp[i]);
for (size_t i = 0; i < grds.size(); i++)
grds[i].getGradientAtQPs(elInfo, quad, fastQuad, qpGrd[i]);
grds[i]->getGrdAtQPs(elInfo, quad, fastQuad, qpGrd[i]);
double tmp = 0.0;
for (int iq = 0; iq < fastQuad->getNumPoints(); iq++) {
......
AMDiS/src/DOFVector.h
View file @ 831c4c20
......@@ -65,13 +65,17 @@ namespace AMDiS {
virtual ~DOFVectorBase();
/// For the given element, this function returns an array of all DOFs of this
/// DOFVector that are defined on this element.
/** \brief
* For the given element, this function returns an array of all DOFs of this
* DOFVector that are defined on this element.
*/
virtual void getLocalVector(const Element *el,
mtl::dense_vector<T>& localVec) const;
/// Evaluates the DOF vector at a set of quadrature points defined on the
/// given element.
/** \brief
* Evaluates the DOF vector at a set of quadrature points defined on the
* given element.
*/
void getVecAtQPs(const ElInfo *elInfo,
const Quadrature *quad,
const FastQuadrature *quadFast,
......@@ -83,8 +87,10 @@ namespace AMDiS {
const FastQuadrature *quadFast,
mtl::dense_vector<T>& vecAtQPs) const;
/// Evaluates the gradient of a DOF vector at a set of quadrature points
/// defined on the given element.
/** \brief
* Evaluates the gradient of a DOF vector at a set of quadrature points defined on the
* given element.
*/
void getGrdAtQPs( const ElInfo *elInfo,
const Quadrature *quad,
const FastQuadrature *quadFast,
......@@ -96,8 +102,10 @@ namespace AMDiS {
const FastQuadrature *quadFast,
mtl::dense_vector<typename GradientType<T>::type> &grdAtQPs) const;
/// Evaluates the comp'th component of the derivative of a DOF vector at a
/// set of quadrature points defined on the given element.
/** \brief
* Evaluates the comp'th component of the derivative of a DOF vector at a set of quadrature points defined on the
* given element.
*/
void getDerivativeAtQPs( const ElInfo *elInfo,
const Quadrature *quad,
const FastQuadrature *quadFast,
......@@ -111,8 +119,10 @@ namespace AMDiS {
int comp,
mtl::dense_vector<T> &derivativeAtQPs) const;
/// Evaluates the jacobian of a DOF vector at a set of quadrature points
/// defined on the given element.
/** \brief
* Evaluates the jacobian of a DOF vector at a set of quadrature points defined on the
* given element.
*/
void getD2AtQPs(const ElInfo *elInfo,
const Quadrature *quad,
const FastQuadrature *quadFast,
......@@ -124,8 +134,10 @@ namespace AMDiS {
return feSpace;
}
/// Assembles the element vector for the given ellement and adds the element
/// matrix to the current DOF vector.
/** \brief
* Assembles the element vector for the given ellement and adds the
* element matrix to the current DOF vector.
*/
void assemble(T factor, ElInfo *elInfo,
const BoundaryType *bound,
Operator *op = NULL);
......@@ -142,9 +154,11 @@ namespace AMDiS {
ElInfo *elInfo,
bool add = true);
/// That function must be called after the matrix assembling has been
/// finished. This makes it possible to start some cleanup or matrix data
/// compressing procedures.
/* \brief
* That function must be called after the matrix assembling has been finished.
* This makes it possible to start some cleanup or matrix data compressing
* procedures.
*/
void finishAssembling();
inline void addOperator(Operator* op,
......@@ -377,8 +391,10 @@ namespace AMDiS {
return vec.end();
}
/// Used by DOFAdmin to compress this DOFVector. Implementation of
/// DOFIndexedBase::compress()
/** \brief
* Used by DOFAdmin to compress this DOFVector. Implementation of
* DOFIndexedBase::compress()
*/
virtual void compressDOFIndexed(int first, int last,
std::vector<DegreeOfFreedom> &newDof);
......@@ -457,18 +473,22 @@ namespace AMDiS {
/// Calculates Integral of this DOFVector
double Int(Quadrature* q = NULL) const;
/// Calculates Integral of this DOFVector over parts of the domain
/// boundary, indicated by boundaryType. Implemented for DOFVector<double>
/** \brief
* Calculates Integral of this DOFVector over parts of the domain
* boundary, indicated by boundaryType. Implemented for DOFVector<double>
**/
T IntOnBoundary(BoundaryType boundary, Quadrature* q = NULL) const
{
FUNCNAME("DOFVector::IntOnBoundary())");
TEST_EXIT(false)("Please implement your integration\n");
return 0.0;
}
/// Calculates Integral of this DOFVector times normal vector over parts
/// of the domain boundary, indicated by boundaryType. Implemented for
/// DOFVector<WorldVector<double> >
/** \brief
* Calculates Integral of this DOFVector times normal vector over parts
* of the domain boundary, indicated by boundaryType. Implemented for
* DOFVector<WorldVector<double> >
**/
double IntOnBoundaryNormal(BoundaryType boundary, Quadrature* q = NULL) const
{
FUNCNAME("DOFVector::IntOnBoundaryNormal())");
......@@ -561,25 +581,31 @@ namespace AMDiS {
///
int calcMemoryUsage() const;
/// Computes the coefficients of the interpolant of the function fct and
/// stores these in the DOFVector
/** \brief
* Computes the coefficients of the interpolant of the function fct and
* stores these in the DOFVector
*/
void interpol(AbstractFunction<T, WorldVector<double> > *fct);
void interpol(DOFVector<T> *v, double factor = 1.0);
/// Eval DOFVector at given point p. If oldElInfo != NULL the search for
/// the element, where p is inside, starts from oldElInfo. implemented for:
/// double, WorldVector<double>
inline const T evalAtPoint(WorldVector<double> &p,
ElInfo *oldElInfo = NULL) const
/** eval DOFVector at given point p. If oldElInfo != NULL the search for the element, where p is inside,
* starts from oldElInfo.
* implemented for: double, WorldVector< double >
*/
inline const T& evalAtPoint(
WorldVector<double> &p, ElInfo *oldElInfo = NULL, T* value = NULL) const
{
FUNCNAME("DOFVector::evalAtPoint())");
TEST_EXIT(false)("Please implement your evaluation\n");
return *value;
}
const bool getDOFidxAtPoint(WorldVector<double> &p, DegreeOfFreedom &idx, ElInfo *oldElInfo = NULL, bool useOldElInfo = false);
/** determine the DegreeOfFreedom that has coords with minimal euclidean distance to WorldVector p
* return true if DOF is found, and false otherwise
*/
const bool getDOFidxAtPoint(WorldVector<double> &p, DegreeOfFreedom &idx, ElInfo *oldElInfo = NULL, bool useOldElInfo = false) const;
/// Writes the data of the DOFVector to an output stream.
void serialize(std::ostream &out)
......@@ -598,11 +624,13 @@ namespace AMDiS {
in.read(reinterpret_cast<char*>(&(vec[0])), size * sizeof(T));
}
// DOFVector<WorldVector<T> > *getGradient(DOFVector<WorldVector<T> >*) const;
DOFVector<typename GradientType<T>::type>*
getGradient(DOFVector<typename GradientType<T>::type> *grad) const;
WorldVector<DOFVector<T>*> *getGradient(WorldVector<DOFVector<T>*> *grad) const;
// DOFVector<WorldVector<T> >* getRecoveryGradient(DOFVector<WorldVector<T> >*) const;
DOFVector<typename GradientType<T>::type>*
getRecoveryGradient(DOFVector<typename GradientType<T>::type> *grad) const;
......@@ -631,13 +659,12 @@ namespace AMDiS {
BoundaryType boundaryType, Quadrature* q) const;
template<>
const double DOFVector<double>::evalAtPoint(WorldVector<double> &p,
ElInfo *oldElInfo) const;
const double& DOFVector<double>::evalAtPoint(
WorldVector<double> &p, ElInfo *oldElInfo, double* value) const;
template<>
const WorldVector<double>
DOFVector<WorldVector<double> >::evalAtPoint(WorldVector<double> &p,
ElInfo *oldElInfo) const;
const WorldVector<double>& DOFVector<WorldVector<double> >::evalAtPoint(
WorldVector<double> &p, ElInfo *oldElInfo, WorldVector<double>* value) const;
template<>
void DOFVector<double>::refineInterpol(RCNeighbourList&, int);
......@@ -664,8 +691,10 @@ namespace AMDiS {
public DOFContainer
{
public:
/// Calls constructor of DOFVector<DegreeOfFreedom> and registers itself
/// as DOFContainer at DOFAdmin
/** \brief
* Calls constructor of DOFVector<DegreeOfFreedom> and registers itself
* as DOFContainer at DOFAdmin
*/
DOFVectorDOF(const FiniteElemSpace* feSpace_, std::string name_)
: DOFVector<DegreeOfFreedom>(feSpace_, name_)
{
......@@ -678,8 +707,10 @@ namespace AMDiS {
feSpace->getAdmin()->removeDOFContainer(this);
}
/// Implements DOFContainer::operator[]() by calling
/// DOFVector<DegreeOfFreedom>::operator[]()
/** \brief
* Implements DOFContainer::operator[]() by calling
* DOFVector<DegreeOfFreedom>::operator[]()
*/
DegreeOfFreedom& operator[](DegreeOfFreedom i)
{
return DOFVector<DegreeOfFreedom>::operator[](i);
......@@ -843,22 +874,20 @@ namespace AMDiS {
std::vector<DOFVector<double>*> *res);
/** \brief
* Computes the integral of a function that includes two different DOFVectors.
* This function works also for the case that the DOFVectors are defined on
* two different meshes.
* Computes the integral of a function that includes two different DOFVectors. This
* function works also for the case that the DOFVectors are defined on two different
* meshes.
*/
double integrate(const DOFVector<double> &vec1,
const DOFVector<double> &vec2,
BinaryAbstractFunction<double, double, double> *fct);
/// Computes the integral of a function with two DOFVectors defined on the
/// same mesh.
/// Computes the integral of a function with two DOFVectors defined on the same mesh.
double intSingleMesh(const DOFVector<double> &vec1,
const DOFVector<double> &vec2,
BinaryAbstractFunction<double, double, double> *fct);
/// Computes the integral of a function with two DOFVectors defined on
/// different meshes.
/// Computes the integral of a function with two DOFVectors defined on different meshes.
double intDualMesh(const DOFVector<double> &vec1,
const DOFVector<double> &vec2,
BinaryAbstractFunction<double, double, double> *fct);
......@@ -874,7 +903,7 @@ namespace AMDiS {
double integrateGeneralGradient(const std::vector<DOFVector<double>*> &vecs,
const std::vector<DOFVector<double>*> &grds,
BinaryAbstractFunction<double, std::vector<double>, std::vector<WorldVector<double> > *fct);
BinaryAbstractFunction<double, std::vector<double>, std::vector<WorldVector<double> > > *fct);
}
#include "DOFVector.hh"
......
AMDiS/src/DOFVector.hh
View file @ 831c4c20
......@@ -678,11 +678,11 @@ namespace AMDiS {
template<typename T>
bool DOFVector<T>::getDOFidxAtPoint(WorldVector<double> &p, DegreeOfFreedom &idx, ElInfo *oldElInfo, bool useOldElInfo)
const bool DOFVector<T>::getDOFidxAtPoint(WorldVector<double> &p, DegreeOfFreedom &idx, ElInfo *oldElInfo, bool useOldElInfo) const
{ FUNCNAME("DOFVector::getDOFidxAtPoint()");
Mesh *mesh = feSpace->getMesh();
const BasisFunction *basFcts = feSpace->getBasisFcts();
Mesh *mesh = this->feSpace->getMesh();
const BasisFunction *basFcts = this->feSpace->getBasisFcts();
int dim = mesh->getDim();
int numBasFcts = basFcts->getNumber();
......@@ -692,7 +692,7 @@ namespace AMDiS {
ElInfo *elInfo = mesh->createNewElInfo();
idx = 0;
inside = false;
bool inside = false;
if (oldElInfo && useOldElInfo && oldElInfo->getMacroElement()) {
inside = mesh->findElInfoAtPoint(p, elInfo, lambda, oldElInfo->getMacroElement(), NULL, NULL);
......@@ -707,7 +707,7 @@ namespace AMDiS {
if (!inside)
return false;
basFcts->getLocalIndices(elInfo->getElement(), feSpace->getAdmin(), localIndices);
basFcts->getLocalIndices(elInfo->getElement(), this->feSpace->getAdmin(), localIndices);
FixVec<WorldVector<double>, VERTEX> coords = elInfo->getCoords();
int minIdx = -1;
double minDist = 1.e15;
......
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