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Commit 9398ec48 authored by Thomas Witkowski's avatar Thomas Witkowski
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New function for traversing sub boundaries.

parent 7c8fd6c5
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AMDiS/src/ElInfo.h
View file @ 9398ec48
......@@ -424,9 +424,10 @@ namespace AMDiS {
void fillElInfo(const MacroElement *mel, int refinementPathLength, unsigned long refinementPath);
/** \brief
* calculates the Jacobian of the barycentric coordinates on \element and stores
* the matrix in grd_lam. The return value of the function is the absolute
* value of the determinant of the affine linear paraetrization's Jacobian.
* Calculates the Jacobian of the barycentric coordinates on \element and
* stores the matrix in grd_lam. The return value of the function is the
* absolute value of the determinant of the affine linear paraetrization's
* Jacobian.
* pure virtual => must be overriden in sub-class.
*/
virtual double calcGrdLambda(DimVec<WorldVector<double> >& grd_lam) = 0;
......
AMDiS/src/Element.h
View file @ 9398ec48
......@@ -340,10 +340,9 @@ namespace AMDiS {
* \{
*/
/// orient the vertices of edges/faces.
/// Used by Estimator for the jumps => same quadrature nodes from both sides!
virtual const FixVec<int,WORLD>&
sortFaceIndices(int face, FixVec<int, WORLD> *vec) const = 0;
/// Orient the vertices of edges/faces. Used
/// by Estimator for the jumps => same quadrature nodes from both sides!
virtual void sortFaceIndices(int face, FixVec<int, WORLD> &vec) const = 0;
/// Returns a copy of itself. Needed by Mesh to create Elements by
/// a prototype.
......@@ -432,11 +431,15 @@ namespace AMDiS {
* identifing the DOF to be a vertex, edge, face or
* center DOF.
*/
virtual void getHigherOrderDofs(const FiniteElemSpace* feSpace,
BoundaryObject bound,
DofContainer& dofs,
bool baseDofPtr = false,
vector<GeoIndex>* dofGeoIndex = NULL) const = 0;
virtual void
getHigherOrderDofs(const FiniteElemSpace* feSpace,
BoundaryObject bound,
DofContainer& dofs,
bool baseDofPtr = false,
vector<GeoIndex>* dofGeoIndex = NULL) const = 0;
virtual void getSubBoundary(BoundaryObject bound,
vector<BoundaryObject> &subBound) const = 0;
/// Combines \ref getNodeDofs and \ref getHigherOrderDofs to one function.
/// See parameter description there.
......
AMDiS/src/Line.cc
View file @ 9398ec48
......@@ -45,13 +45,9 @@ namespace AMDiS {
}
}
const FixVec<int, WORLD>& Line::sortFaceIndices(int face,
FixVec<int,WORLD> *vec) const
void Line::sortFaceIndices(int face, FixVec<int,WORLD> &vec) const
{
static FixVec<int, WORLD> result(1, NO_INIT);
FixVec<int, WORLD> *v = vec ? vec : &result;
(*v)[0] = face;
return *v;
vec[0] = face;
}
}
AMDiS/src/Line.h
View file @ 9398ec48
......@@ -102,8 +102,7 @@ namespace AMDiS {
}
/// implements Element::sortFaceIndices
const FixVec<int,WORLD>& sortFaceIndices(int face,
FixVec<int,WORLD> *vec) const;
void sortFaceIndices(int face, FixVec<int,WORLD> &vec) const;
/// implements Element::clone
......@@ -187,6 +186,14 @@ namespace AMDiS {
ERROR_EXIT("Not yet implemented!\n");
}
void getSubBoundary(BoundaryObject bound,
vector<BoundaryObject> &subBound) const
{
FUNCNAME("Line::getSubBoundary()");
ERROR_EXIT("Not yet implemented!\n");
}
protected:
/// vertexOfEdge[i][j] is the local number of the j-th vertex of the i-th
/// edge of this element.
......
AMDiS/src/Tetrahedron.cc
View file @ 9398ec48
......@@ -120,14 +120,11 @@ namespace AMDiS {
}
const FixVec<int, WORLD>& Tetrahedron::sortFaceIndices(int face,
FixVec<int,WORLD> *vec) const
void Tetrahedron::sortFaceIndices(int face, FixVec<int,WORLD> &vec) const
{
static MatrixOfFixVecs<FixVec<int,WORLD> > *sorted_3d = NULL;
FixVec<int,WORLD> *val = NULL;
const int *vof = vertexOfFace[face];
if (NULL == sorted_3d) {
if (sorted_3d == NULL) {
sorted_3d = new MatrixOfFixVecs<FixVec<int,WORLD> >(3, 4, 7, NO_INIT);
(*sorted_3d)[0][0][0] = (*sorted_3d)[0][0][1] =
......@@ -177,6 +174,7 @@ namespace AMDiS {
(*sorted_3d)[2][5][0] = (*sorted_3d)[2][6][1] = 3;
}
const int *vof = vertexOfFace[face];
int no = 0;
if (dof[vof[0]][0] < dof[vof[1]][0])
no++;
......@@ -185,18 +183,10 @@ namespace AMDiS {
if (dof[vof[2]][0] < dof[vof[0]][0])
no += 4;
if (!(no >= 1 && no <= 6))
ERROR_EXIT("Cannot sort face indices of element %d at face %d\n",
getIndex(), face);
if (vec) {
val = vec;
*val = (*sorted_3d)[face][no];
} else {
val = &((*sorted_3d)[face][no]);
}
TEST_EXIT_DBG(no >= 1 && no <= 6)
("Cannot sort face indices of element %d at face %d\n", getIndex(), face);
return(*(const_cast<const FixVec<int,WORLD>* >(val)));
vec = (*sorted_3d)[face][no];
}
......@@ -347,32 +337,6 @@ namespace AMDiS {
}
void Tetrahedron::prepareNextBound(BoundaryObject &bound, int ithChild) const
{
FUNCNAME("Tetrahedron::prepareNextBound()");
switch (bound.subObj) {
case FACE:
for (ExcludeList::iterator it = bound.excludedSubstructures.begin();
it != bound.excludedSubstructures.end(); ++it) {
if (it->first == EDGE && it->second != -1)
it->second = edgeOfChild[bound.elType][ithChild][it->second];
}
bound.ithObj = sideOfChild[bound.elType][ithChild][bound.ithObj];
bound.elType = (bound.elType + 1) % 3;
break;
case EDGE:
bound.ithObj = edgeOfChild[bound.elType][ithChild][bound.ithObj];
bound.elType = (bound.elType + 1) % 3;
break;
default:
ERROR_EXIT("Should not happen!\n");
}
}
void Tetrahedron::getHigherOrderDofs(const FiniteElemSpace* feSpace,
BoundaryObject bound,
DofContainer& dofs,
......@@ -491,4 +455,36 @@ namespace AMDiS {
}
}
void Tetrahedron::getSubBoundary(BoundaryObject bound,
vector<BoundaryObject> &subBound) const
{
}
void Tetrahedron::prepareNextBound(BoundaryObject &bound, int ithChild) const
{
FUNCNAME("Tetrahedron::prepareNextBound()");
switch (bound.subObj) {
case FACE:
for (ExcludeList::iterator it = bound.excludedSubstructures.begin();
it != bound.excludedSubstructures.end(); ++it) {
if (it->first == EDGE && it->second != -1)
it->second = edgeOfChild[bound.elType][ithChild][it->second];
}
bound.ithObj = sideOfChild[bound.elType][ithChild][bound.ithObj];
bound.elType = (bound.elType + 1) % 3;
break;
case EDGE:
bound.ithObj = edgeOfChild[bound.elType][ithChild][bound.ithObj];
bound.elType = (bound.elType + 1) % 3;
break;
default:
ERROR_EXIT("Should not happen!\n");
}
}
}
AMDiS/src/Tetrahedron.h
View file @ 9398ec48
......@@ -104,8 +104,7 @@ namespace AMDiS {
bool hasSide(Element* sideElem) const;
/// implements Element::sortFaceIndices
const FixVec<int,WORLD>& sortFaceIndices(int face,
FixVec<int,WORLD> *vec) const;
void sortFaceIndices(int face, FixVec<int,WORLD> &vec) const;
/// Returns false because this element is a Tetrahedron.
inline bool isLine() const
......@@ -157,6 +156,9 @@ namespace AMDiS {
bool baseDofPtr = false,
vector<GeoIndex>* dofGeoIndex = NULL) const;
void getSubBoundary(BoundaryObject bound,
vector<BoundaryObject> &subBound) const;
void prepareNextBound(BoundaryObject &bound, int ithChild) const;
public:
......
AMDiS/src/Triangle.cc
View file @ 9398ec48
......@@ -51,16 +51,11 @@ namespace AMDiS {
}
}
const FixVec<int, WORLD>& Triangle::sortFaceIndices(int face,
FixVec<int, WORLD> *vec) const
void Triangle::sortFaceIndices(int face, FixVec<int, WORLD> &vec) const
{
static MatrixOfFixVecs<FixVec<int, WORLD> > *sorted_2d = NULL;
int no = 0;
FixVec<int, WORLD> *val = NULL;
const int *vof = vertexOfEdge[face];
if (NULL == sorted_2d) {
if (sorted_2d == NULL) {
sorted_2d = new MatrixOfFixVecs<FixVec<int, WORLD> >(2, 3, 2, NO_INIT);
(*sorted_2d)[1][0][1] = (*sorted_2d)[1][1][0] =
......@@ -71,19 +66,9 @@ namespace AMDiS {
(*sorted_2d)[1][0][0] = (*sorted_2d)[1][1][1] = 2;
}
if (dof[vof[0]][0] < dof[vof[1]][0])
no = 0;
else
no = 1;
if (vec) {
val = vec;
*val = (*sorted_2d)[face][no];
} else {
val = &((*sorted_2d)[face][no]);
}
return *(const_cast<const FixVec<int, WORLD>* >(val));
const int *vof = vertexOfEdge[face];
int no = ((dof[vof[0]][0] < dof[vof[1]][0]) ? 0 : 1);
vec = (*sorted_2d)[face][no];
}
......@@ -282,4 +267,49 @@ namespace AMDiS {
}
void Triangle::getSubBoundary(BoundaryObject bound,
vector<BoundaryObject> &subBound) const
{
TEST_EXIT_DBG(bound.subObj == EDGE)("This should not happen!\n");
if (!child[0]) {
subBound.push_back(bound);
return;
}
BoundaryObject nextBound0 = bound;
BoundaryObject nextBound1 = bound;
prepareNextBound(nextBound0, 0);
prepareNextBound(nextBound1, 1);
if (nextBound0.ithObj >= 0 && nextBound1.ithObj >= 0) {
if (bound.reverseMode) {
child[1]->getSubBoundary(nextBound1, subBound);
child[0]->getSubBoundary(nextBound0, subBound);
} else {
child[0]->getSubBoundary(nextBound0, subBound);
child[1]->getSubBoundary(nextBound1, subBound);
}
} else {
if (nextBound0.ithObj >= 0)
child[0]->getSubBoundary(nextBound0, subBound);
if (nextBound1.ithObj >= 0)
child[1]->getSubBoundary(nextBound1, subBound);
}
}
void Triangle::prepareNextBound(BoundaryObject &bound, int ithChild) const
{
FUNCNAME("Triangle::prepareNextBound()");
TEST_EXIT_DBG(bound.el == this)("Wrong element!\n");
TEST_EXIT_DBG(child[0])("Has no child!\n");
bound.ithObj = sideOfChild[ithChild][bound.ithObj];
bound.el = child[ithChild];
bound.elIndex = child[ithChild]->getIndex();
}
}
AMDiS/src/Triangle.h
View file @ 9398ec48
......@@ -95,7 +95,7 @@ namespace AMDiS {
bool hasSide(Element* sideElem) const;
/// implements Element::sortFaceIndices
const FixVec<int, WORLD>& sortFaceIndices(int face, FixVec<int, WORLD> *vec) const;
void sortFaceIndices(int face, FixVec<int, WORLD> &vec) const;
/// implements Element::isLine. Returns false because this element is a Triangle
inline bool isLine() const
......@@ -205,6 +205,11 @@ namespace AMDiS {
bool baseDofPtr = false,
vector<GeoIndex>* dofGeoIndex = NULL) const;
void prepareNextBound(BoundaryObject &bound, int ithChild) const;
void getSubBoundary(BoundaryObject bound,
vector<BoundaryObject> &subBound) const;
protected:
/// vertexOfEdge[i][j] is the local number of the j-th vertex of the i-th
/// edge of this element.
......
AMDiS/src/est/ResidualEstimator.cc
View file @ 9398ec48
......@@ -370,8 +370,8 @@ namespace AMDiS {
int oppV = elInfo->getOppVertex(face);
el->sortFaceIndices(face, &faceIndEl);
neigh->sortFaceIndices(oppV, &faceIndNeigh);
el->sortFaceIndices(face, faceIndEl);
neigh->sortFaceIndices(oppV, faceIndNeigh);
neighInfo->setElement(const_cast<Element*>(neigh));
neighInfo->setFillFlag(Mesh::FILL_COORDS);
......
AMDiS/src/est/ResidualEstimator.h
View file @ 9398ec48
......@@ -87,10 +87,8 @@ namespace AMDiS {
virtual void init(double timestep);
/** \brief
* Estimates the error on an element. For more information about the
* parameter, see the description \ref Estimator::estimateElement.
*/
/// Estimates the error on an element. For more information about the
/// parameter, see the description \ref Estimator::estimateElement.
virtual void estimateElement(ElInfo *elInfo, DualElInfo *dualElInfo = NULL);
virtual void exit(bool output = true);
......@@ -114,12 +112,10 @@ namespace AMDiS {
/// Constant in front of the time
double C3;
/** \brief
* Is true, if C1 != 0, and C0 and C3 = 0, hence only the jump residual must be
* calculated. In this case, some optimizations can be done, because the jump
* residual is calculated only on second order terms.
*/
/// Is true, if C1 != 0, and C0 and C3 = 0, hence only the jump residual must be
/// calculated. In this case, some optimizations can be done, because the jump
/// residual is calculated only on second order terms.
bool jumpResidualOnly;
/// Number of systems, e.g., number of variables in the equation.
......@@ -184,11 +180,9 @@ namespace AMDiS {
/// Maximal number of neighbours an element may have in the used dimension.
int nNeighbours;
/** \brief
* Defines for every system if there are second order terms. These values
* are used to ommit computations of the jump residual that is defined
* only on second order terms.
*/
/// Defines for every system if there are second order terms. These values
/// are used to ommit computations of the jump residual that is defined
/// only on second order terms.
std::vector<bool> secondOrderTerms;
};
}
......
AMDiS/src/est/SimpleResidualEstimator.cc
View file @ 9398ec48
......@@ -248,8 +248,8 @@ namespace AMDiS {
// === The next lines are only to set all information about the ===
// === neighbouring element. ===
int oppV = elInfo->getOppVertex(face);
el->sortFaceIndices(face, &faceIndEl);
neigh->sortFaceIndices(oppV, &faceIndNeigh);
el->sortFaceIndices(face, faceIndEl);
neigh->sortFaceIndices(oppV, faceIndNeigh);
neighInfo->setElement(const_cast<Element*>(neigh));
neighInfo->setFillFlag(Mesh::FILL_COORDS);
......
AMDiS/src/parallel/InteriorBoundary.h
View file @ 9398ec48
......@@ -60,6 +60,21 @@ namespace AMDiS {
return periodic;
}
vector<AtomicBoundary>& getOwn(int rank)
{
return own[rank];
}
vector<AtomicBoundary>& getOther(int rank)
{
return other[rank];
}
vector<AtomicBoundary>& getPeriodic(int rank)
{
return periodic[rank];
}
bool hasPeriodic()
{
return static_cast<bool>(periodic.size());
......
test/mpi/data/data0007/bound_rank_0.dat 0 → 100644
View file @ 9398ec48
1885 2 1
1884 2 0
1883 2 1
1882 2 0
1877 2 1
1876 2 0
1875 2 1
1874 2 0
1841 2 1
1840 2 0
1839 2 1
1838 2 0
1833 2 1
1832 2 0
1831 2 1
1830 2 0
1673 2 1
1672 2 0
1671 2 1
1670 2 0
1665 2 1
1664 2 0
1663 2 1
1662 2 0
1629 2 1
1628 2 0
1627 2 1
1626 2 0
1621 2 1
1620 2 0
1619 2 1
1618 2 0
test/mpi/data/data0007/bound_rank_1.dat 0 → 100644
View file @ 9398ec48
642 2 0
643 2 1
644 2 0
645 2 1
650 2 0
651 2 1
652 2 0
653 2 1
686 2 0
687 2 1
688 2 0
689 2 1
694 2 0
695 2 1
696 2 0
697 2 1
888 2 0
889 2 1
890 2 0
891 2 1
897 2 1
898 2 0
899 2 1
942 2 0
943 2 1
944 2 0
945 2 1
952 2 0
953 2 1
954 2 0
955 2 1
test/mpi/data/data0007/bound_rank_2.dat 0 → 100644
View file @ 9398ec48
1885 2 1
1884 2 0
1883 2 1
1882 2 0
1877 2 1
1876 2 0
1875 2 1
1874 2 0
1841 2 1
1840 2 0
1839 2 1
1838 2 0
1833 2 1
1832 2 0
1831 2 1
1830 2 0
1673 2 1
1672 2 0
1671 2 1
1670 2 0
1665 2 1
1664 2 0
1663 2 1
1662 2 0
1629 2 1
1628 2 0
1627 2 1
1626 2 0
1621 2 1
1620 2 0
1619 2 1
1618 2 0
test/mpi/data/data0007/bound_rank_3.dat 0 → 100644
View file @ 9398ec48
642 2 0
643 2 1
644 2 0
645 2 1
650 2 0
651 2 1
652 2 0
653 2 1
686 2 0
687 2 1
688 2 0
689 2 1
694 2 0
695 2 1
696 2 0
697 2 1
888 2 0
889 2 1
890 2 0
891 2 1
896 2 0
897 2 1
898 2 0
899 2 1
942 2 0
943 2 1
944 2 0
945 2 1
952 2 0
953 2 1
954 2 0
955 2 1
test/mpi/init/test0007.dat.2d 0 → 100644
View file @ 9398ec48
dimension of world: 2
elliptMesh->macro file name: ./macro/macro.stand.2d
elliptMesh->global refinements: 10
ellipt->mesh: elliptMesh
ellipt->dim: 2
ellipt->components: 1
ellipt->polynomial degree[0]: 1
ellipt->solver: cg
ellipt->solver->max iteration: 10
ellipt->solver->tolerance: 1.e-8
ellipt->solver->info: 10
ellipt->solver->left precon: diag
ellipt->solver->right precon: no
ellipt->estimator[0]: 0
ellipt->estimator[0]->error norm: 1 % 1: H1_NORM, 2: L2_NORM
ellipt->estimator[0]->C0: 0.1 % constant of element residual
ellipt->estimator[0]->C1: 0.1 % constant of jump residual
ellipt->marker[0]->strategy: 0 % 0: no adaption 1: GR 2: MS 3: ES 4:GERS
ellipt->output->filename: output/ellipt.2d
ellipt->output->ParaView format: 1
parallel->log main rank: 0
parallel->pre refine: 0
parallel->partitioner: simple
test/mpi/src/test0007.cc 0 → 100644
View file @ 9398ec48
#define BOOST_TEST_DYN_LINK
#define BOOST_TEST_MODULE 0007
#define BOOST_TEST_NO_MAIN
#include <boost/test/unit_test.hpp>
#include <AMDiS.h>
using namespace AMDiS;
using namespace std;
/*
- Test must run with 4 ranks.
- Test for function Triangle::getSubBoundary()
- Test on edge boundary between rank 0/1 and 2/3
*/
BOOST_AUTO_TEST_CASE(amdis_mpi_triangle_getsubboundary)
{
BOOST_REQUIRE(MPI::COMM_WORLD.Get_size() == 4);