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Commit a6bacc8a authored by Thomas Witkowski's avatar Thomas Witkowski
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Work on repartitioning with higher order finite elements.

parent 79bcb0ed
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AMDiS/src/Containers.h 0 → 100644
View file @ a6bacc8a
// ============================================================================
// == ==
// == AMDiS - Adaptive multidimensional simulations ==
// == ==
// == http://www.amdis-fem.org ==
// == ==
// ============================================================================
//
// Software License for AMDiS
//
// Copyright (c) 2010 Dresden University of Technology
// All rights reserved.
// Authors: Simon Vey, Thomas Witkowski et al.
//
// This file is part of AMDiS
//
// See also license.opensource.txt in the distribution.
/** \file Containers.h */
#ifndef AMDIS_CONTAINERS_H
#define AMDIS_CONTAINERS_H
#include <map>
#include <set>
namespace AMDiS {
/*
template<typename Key, typename T>
class amdis_map : public std::map<Key, T>
{
public:
inline void insert(Key &key, T &v)
{
std::map<Key, T>::insert(std::pair<Key, T>(key, v));
}
inline T& operator[](const Key& key)
{
return std::map<Key, T>::operator[](key);
}
};
*/
}
#endif
AMDiS/src/Element.cc
View file @ a6bacc8a
......@@ -627,12 +627,13 @@ namespace AMDiS {
void Element::getAllDofs(const FiniteElemSpace* feSpace,
BoundaryObject bound,
DofContainer& dofs)
DofContainer& dofs,
bool baseDofPtr)
{
getNodeDofs(feSpace, bound, dofs);
getNodeDofs(feSpace, bound, dofs, baseDofPtr);
if (feSpace->getBasisFcts()->getDegree() > 1)
getHigherOrderDofs(feSpace, bound, dofs);
getHigherOrderDofs(feSpace, bound, dofs, baseDofPtr);
}
}
AMDiS/src/Element.h
View file @ a6bacc8a
......@@ -82,10 +82,8 @@ namespace AMDiS {
///
void deleteElementDOFs();
/** \brief
* Clone this Element and return a reference to it. Because also the DOFs
* are cloned, \ref Mesh::serializedDOfs must be used.
*/
/// Clone this Element and return a reference to it. Because also the DOFs
/// are cloned, \ref Mesh::serializedDOfs must be used.
Element* cloneWithDOFs();
/** \name getting methods
......@@ -111,10 +109,8 @@ namespace AMDiS {
return child[i];
}
/** \brief
* Returns true if Element is a leaf element (\ref child[0] == NULL), returns
* false otherwise.
*/
/// Returns true if Element is a leaf element (\ref child[0] == NULL), returns
/// false otherwise.
inline const bool isLeaf() const
{
return (child[0] == NULL);
......@@ -155,10 +151,8 @@ namespace AMDiS {
dofValid = b;
}
/** \brief
* Returns \ref elementData's error estimation, if Element is a leaf element
* and has leaf data.
*/
/// Returns \ref elementData's error estimation, if Element is a leaf element
/// and has leaf data.
inline double getEstimation(int row) const
{
if (isLeaf()) {
......@@ -172,10 +166,8 @@ namespace AMDiS {
return 0.0;
}
/** \brief
* Returns Element's coarsening error estimation, if Element is a leaf
* element and if it has leaf data and if this leaf data are coarsenable.
*/
/// Returns Element's coarsening error estimation, if Element is a leaf
/// element and if it has leaf data and if this leaf data are coarsenable.
inline double getCoarseningEstimation(int row)
{
if (isLeaf()) {
......@@ -195,10 +187,8 @@ namespace AMDiS {
/// Returns local vertex number of the j-th vertex of the i-th edge
virtual int getVertexOfEdge(int i, int j) const = 0;
/** \brief
* Returns local vertex number of the vertexIndex-th vertex of the
* positionIndex-th part of type position (vertex, edge, face)
*/
/// Returns local vertex number of the vertexIndex-th vertex of the
/// positionIndex-th part of type position (vertex, edge, face)
virtual int getVertexOfPosition(GeoIndex position,
int positionIndex,
int vertexIndex) const = 0;
......@@ -215,10 +205,6 @@ namespace AMDiS {
///
virtual DofFace getFace(int localFaceIndex) const = 0;
/// Returns either vertex, edge or face of the element.
/* template<typename T> */
/* T getObject(int index); */
/// Returns the number of parts of type i in this element
virtual int getGeo(GeoIndex i) const = 0;
......@@ -271,10 +257,8 @@ namespace AMDiS {
elementData = ed;
}
/** \brief
* Sets \ref newCoord of Element. Needed by refinement, if Element has a
* boundary edge on a curved boundary.
*/
/// Sets \ref newCoord of Element. Needed by refinement, if Element has a
/// boundary edge on a curved boundary.
inline void setNewCoord(WorldVector<double>* coord)
{
newCoord = coord;
......@@ -292,10 +276,8 @@ namespace AMDiS {
dof[pos] = p;
}
/** \brief
* Checks whether Element is a leaf element and whether it has leaf data.
* If the checks don't fail, leaf data's error estimation is set to est.
*/
/// Checks whether Element is a leaf element and whether it has leaf data.
/// If the checks don't fail, leaf data's error estimation is set to est.
inline void setEstimation(double est, int row)
{
FUNCNAME("Element::setEstimation()");
......@@ -312,10 +294,8 @@ namespace AMDiS {
}
}
/** \brief
* Sets Element's coarsening error estimation, if Element is a leaf element
* and if it has leaf data and if this leaf data are coarsenable.
*/
/// Sets Element's coarsening error estimation, if Element is a leaf element
/// and if it has leaf data and if this leaf data are coarsenable.
inline void setCoarseningEstimation(double est, int row)
{
if (isLeaf()) {
......@@ -363,18 +343,19 @@ namespace AMDiS {
virtual const FixVec<int,WORLD>&
sortFaceIndices(int face, FixVec<int, WORLD> *vec) const = 0;
/// Returns a copy of itself. Needed by Mesh to create Elements by a prototype.
/// Returns a copy of itself. Needed by Mesh to create Elements by
/// a prototype.
virtual Element *clone() = 0;
/** \brief
* Returns which side of child[childnr] corresponds to side sidenr of this
* Element. If the child has no corresponding side, the return value is negative.
*/
/// Returns which side of child[childnr] corresponds to side sidenr of
/// this Element. If the child has no corresponding side, the return value
/// is negative.
virtual int getSideOfChild(int childnr, int sidenr, int elType = 0) const = 0;
/** \brief
* Generalization of \ref getSideOfChild to arbitrary subObject. Thus, e.g., in 3d
* we can ask for the local id of a verte, edge or face on the elements children.
* Generalization of \ref getSideOfChild to arbitrary subObject. Thus,
* e.g., in 3d we can ask for the local id of a verte, edge or face
* on the elements children.
*
* \param[in] childnr Either 0 or 1 for the left or right children.
* \param[in] subObj Defines whether we ask for VERTEX, EDGE or FACE.
......@@ -384,12 +365,12 @@ namespace AMDiS {
virtual int getSubObjOfChild(int childnr, GeoIndex subObj, int ithObj,
int elType = 0) const = 0;
/** \brief
* Returns which vertex of elements parent corresponds to the vertexnr of
* the element, if the element is the childnr-th child of the parent.
* If the vertex is the ner vertex at the refinement edge, -1 is returned.
*/
virtual int getVertexOfParent(int childnr, int vertexnr, int elType = 0) const = 0;
/// Returns which vertex of elements parent corresponds to the vertexnr of
/// the element, if the element is the childnr-th child of the parent.
/// If the vertex is the ner vertex at the refinement edge, -1 is returned.
virtual int getVertexOfParent(int childnr,
int vertexnr,
int elType = 0) const = 0;
/// Returns whether Element is a Line
virtual bool isLine() const = 0;
......@@ -416,14 +397,19 @@ namespace AMDiS {
* nodes alonge this vertex/edge/face are assembled and put together to
* a list.
*
* \param[in] feSpace FE space which is used to get the dofs.
* \param[in] bound Defines the vertex/edge/face of the element on
* which all vertex dofs are assembled.
* \param[out] dofs List of dofs, where the result is stored.
* \param[in] feSpace FE space which is used to get the dofs.
* \param[in] bound Defines the vertex/edge/face of the element on
* which all vertex dofs are assembled.
* \param[out] dofs List of dofs, where the result is stored.
* \param[in] baseDofPtr If true, the base DOF pointes are stored. Thus,
* dof* [\ref dof] of the element is inserted. If
* false, &(dof[.][n0]) is put to the result vector,
* with n0 beging the number of predofs.
*/
virtual void getNodeDofs(const FiniteElemSpace* feSpace,
BoundaryObject bound,
DofContainer& dofs) const = 0;
DofContainer& dofs,
bool baseDofPtr = false) const = 0;
/** \brief
* Traverses a vertex/edge/face of a given element (this includes also all
......@@ -431,18 +417,26 @@ namespace AMDiS {
* to higher order basis functions alonge this vertex/edge/face are
* assembled and put together to a list.
*
* \param[in] feSpace FE space which is used to get the dofs.
* \param[in] bound Defines the edge/face of the element on which
* all non vertex dofs are assembled.
* \param[out] dofs All dofs are put to this dof list.
* \param[in] feSpace FE space which is used to get the dofs.
* \param[in] bound Defines the edge/face of the element on which
* all non vertex dofs are assembled.
* \param[out] dofs All dofs are put to this dof list.
* \param[in] baseDofPtr If true, the base DOF pointes are stored. Thus,
* dof* [\ref dof] of the element is inserted. If
* false, &(dof[.][n0]) is put to the result vector,
* with n0 beging the number of predofs.
*/
virtual void getHigherOrderDofs(const FiniteElemSpace* feSpace,
BoundaryObject bound,
DofContainer& dofs) const = 0;
DofContainer& dofs,
bool baseDofPtr = false) const = 0;
/// Combines \ref getNodeDofs and \ref getHigherOrderDofs to one function.
/// See parameter description there.
void getAllDofs(const FiniteElemSpace* feSpace,
BoundaryObject bound,
DofContainer& dofs);
DofContainer& dofs,
bool baseDofPtr = false);
/** \} */
......
AMDiS/src/ElementDofIterator.h
View file @ a6bacc8a
......@@ -82,7 +82,7 @@ namespace AMDiS {
/// Returns a pointer to the starting position of the current DOF
/// array. Makes only sence, if \ref nextStrict() is used for traverse.
inline const DegreeOfFreedom* getStartDof()
inline const DegreeOfFreedom* getBaseDof()
{
return dofs[node0 + elementPos];
}
......
AMDiS/src/FiniteElemSpace.cc
View file @ a6bacc8a
......@@ -137,4 +137,18 @@ namespace AMDiS {
}
}
}
const FiniteElemSpace*
FiniteElemSpace::getHighest(vector<const FiniteElemSpace*>& feSpaces)
{
const FiniteElemSpace *feSpace = feSpaces[0];
for (unsigned int i = 1; i < feSpaces.size(); i++)
if (feSpaces[i]->getBasisFcts()->getDegree() >
feSpace->getBasisFcts()->getDegree())
feSpace = feSpaces[i];
return feSpace;
}
}
AMDiS/src/FiniteElemSpace.h
View file @ a6bacc8a
......@@ -97,6 +97,11 @@ namespace AMDiS {
int calcMemoryUsage();
static void clear();
/// Returns for a set of FE spaces that FE space having basis functions with
/// the highest degree.
static const FiniteElemSpace*
getHighest(vector<const FiniteElemSpace*>& feSpaces);
protected:
/** \brief
......
AMDiS/src/Line.h
View file @ a6bacc8a
......@@ -173,23 +173,23 @@ namespace AMDiS {
return "Line";
}
void getNodeDofs(const FiniteElemSpace*, BoundaryObject, DofContainer&) const
void getNodeDofs(const FiniteElemSpace*, BoundaryObject,
DofContainer&, bool) const
{
FUNCNAME("Line::getNodeDofs()");
ERROR_EXIT("Not yet implemented!\n");
}
void getHigherOrderDofs(const FiniteElemSpace*, BoundaryObject, DofContainer&) const
void getHigherOrderDofs(const FiniteElemSpace*, BoundaryObject,
DofContainer&, bool) const
{
FUNCNAME("Line::getHigherOrderDofs()");
ERROR_EXIT("Not yet implemented!\n");
}
protected:
/** \brief
* vertexOfEdge[i][j] is the local number of the j-th vertex of the i-th
* edge of this element.
*/
/// vertexOfEdge[i][j] is the local number of the j-th vertex of the i-th
/// edge of this element.
static const int vertexOfEdge[1][2];
static const int sideOfChild[2][2];
......
AMDiS/src/Mesh.cc
View file @ a6bacc8a
......@@ -279,16 +279,10 @@ namespace AMDiS {
TEST_EXIT(feSpaces.size() > 0)("Should not happen!\n");
// === Search for the FE space with the highest degree of polynomials. ===
// === Using this FE space ensures that deleting DOFs defined on it, ===
// === also DOFs of lower order FE spaces will be deleted correctly. ===
const FiniteElemSpace *feSpace = feSpaces[0];
for (unsigned int i = 1; i < feSpaces.size(); i++)
if (feSpaces[i]->getBasisFcts()->getDegree() >
feSpace->getBasisFcts()->getDegree())
feSpace = feSpaces[i];
// Search for the FE space with the highest degree of polynomials. Using this
// FE space ensures that deleting DOFs defined on it, also DOFs of lower
// order FE spaces will be deleted correctly.
const FiniteElemSpace *feSpace = FiniteElemSpace::getHighest(feSpaces);
// === Determine to all DOFs in mesh the macro elements where the DOF ===
......@@ -305,8 +299,8 @@ namespace AMDiS {
while (elInfo) {
elDofIter.reset(elInfo->getElement());
do {
dofsOwner[elDofIter.getStartDof()].insert(elInfo->getMacroElement());
dofsPosIndex[elDofIter.getStartDof()] = elDofIter.getPosIndex();
dofsOwner[elDofIter.getBaseDof()].insert(elInfo->getMacroElement());
dofsPosIndex[elDofIter.getBaseDof()] = elDofIter.getPosIndex();
} while (elDofIter.nextStrict());
elInfo = stack.traverseNext(elInfo);
......@@ -322,9 +316,9 @@ namespace AMDiS {
deque<MacroElement*> newMacroElements;
for (deque<MacroElement*>::iterator elIter = macroElements.begin();
elIter != macroElements.end(); ++elIter) {
// If the current mesh macro element should not be deleted, i.e., it is not a
// member of the list of macro elements to be deleted, is is inserted to the new
// macro element list.
// If the current mesh macro element should not be deleted, i.e., it is not
// a member of the list of macro elements to be deleted, is is inserted to
// the new macro element list.
if (macros.find(*elIter) == macros.end())
newMacroElements.push_back(*elIter);
}
......@@ -334,15 +328,15 @@ namespace AMDiS {
macroElements = newMacroElements;
// === For all macro elements to be deleted, delete them also to be neighbours ===
// === of some other macro elements. Furtheremore, delete the whole element ===
// === hierarchie structure of the macro element. ===
// === For all macro elements to be deleted, delete them also to be ===
// === neighbours of some other macro elements. Furtheremore, delete the ===
// === whole element hierarchie structure of the macro element. ===
for (std::set<MacroElement*>::iterator macroIt = macros.begin();
macroIt != macros.end(); ++macroIt) {
// Go through all neighbours of the macro element and remove this macro element
// to be neighbour of some other macro element.
// Go through all neighbours of the macro element and remove this macro
// element to be neighbour of some other macro element.
for (int i = 0; i < getGeo(NEIGH); i++)
if ((*macroIt)->getNeighbour(i))
for (int j = 0; j < getGeo(NEIGH); j++)
......@@ -361,7 +355,7 @@ namespace AMDiS {
}
// We will delete at least some element DOFs in the next but will keep the
// element object still in memory. Therefore the DOF pointer must be set to be
// element object still in memory. Therefore the DOF pointer must be set
// invalid.
(*macroIt)->getElement()->setDofValid(false);
}
......
AMDiS/src/MeshStructure.cc
View file @ a6bacc8a
......@@ -10,15 +10,17 @@
// See also license.opensource.txt in the distribution.
#include "Debug.h"
#include "DOFVector.h"
#include "Element.h"
#include "ElementDofIterator.h"
#include "ElInfo.h"
#include "MeshStructure.h"
#include "MeshStructure_ED.h"
#include "Mesh.h"
#include "Element.h"
#include "Traverse.h"
#include "ElInfo.h"
#include "RefinementManager.h"
#include "Debug.h"
#include "DOFVector.h"
#include "Traverse.h"
namespace AMDiS {
......@@ -416,66 +418,104 @@ namespace AMDiS {
}
void MeshStructure::getMeshStructureValues(Mesh *mesh,
int macroElIndex,
void MeshStructure::getMeshStructureValues(int macroElIndex,
const DOFVector<double>* vec,
std::vector<double>& values)
{
FUNCNAME("MeshStructure::getMeshStructureValues()");
TEST_EXIT_DBG(mesh)("No mesh defined!\n");
TEST_EXIT_DBG(vec)("No DOFVector defined!\n");
const FiniteElemSpace *feSpace = vec->getFeSpace();
Mesh *mesh = feSpace->getMesh();
bool feSpaceHasNonVertexDofs = (feSpace->getBasisFcts()->getDegree() > 1);
values.clear();
ElementDofIterator elDofIter(feSpace);
TraverseStack stack;
ElInfo *elInfo = stack.traverseFirstOneMacro(mesh, macroElIndex, -1,
Mesh::CALL_EVERY_EL_PREORDER);
while (elInfo) {
// For the macro element the mesh structure code stores all vertex values.
if (elInfo->getLevel() == 0)
for (int i = 0; i < mesh->getGeo(VERTEX); i++)
values.push_back((*vec)[elInfo->getElement()->getDof(i, 0)]);
if (!elInfo->getElement()->isLeaf())
values.push_back((*vec)[elInfo->getElement()->getChild(0)->getDof(mesh->getDim(), 0)]);
if (!elInfo->getElement()->isLeaf()) {
// If no leaf element store the value of the "new" DOF that is created
// by bisectioning of this element.
DegreeOfFreedom dof0 =
elInfo->getElement()->getChild(0)->getDof(mesh->getDim(), 0);
values.push_back((*vec)[dof0]);
} else {
// If leaf element store all non vertex values of this element, thus
// only relevant for higher order basis functions.
if (feSpaceHasNonVertexDofs) {
elDofIter.reset(elInfo->getElement());
do {
if (elDofIter.getPosIndex() != VERTEX)
values.push_back((*vec)[elDofIter.getDof()]);
} while (elDofIter.next());
}
}
elInfo = stack.traverseNext(elInfo);
}
}
void MeshStructure::setMeshStructureValues(Mesh *mesh,
int macroElIndex,
void MeshStructure::setMeshStructureValues(int macroElIndex,
DOFVector<double>* vec,
const std::vector<double>& values)
{
FUNCNAME("MeshStructure::setMeshStructureValues()");
TEST_EXIT_DBG(mesh)("No mesh defined!\n");
TEST_EXIT_DBG(vec)("No DOFVector defined!\n");
TEST_EXIT_DBG(static_cast<int>(values.size()) >= mesh->getGeo(VERTEX))
("Should not happen!\n");
const FiniteElemSpace *feSpace = vec->getFeSpace();
Mesh *mesh = feSpace->getMesh();
bool feSpaceHasNonVertexDofs = (feSpace->getBasisFcts()->getDegree() > 1);
unsigned int counter = 0;
TEST_EXIT_DBG(static_cast<int>(values.size()) >= mesh->getGeo(VERTEX))
("Should not happen!\n");
ElementDofIterator elDofIter(feSpace);
TraverseStack stack;
ElInfo *elInfo = stack.traverseFirstOneMacro(mesh, macroElIndex, -1,
Mesh::CALL_EVERY_EL_PREORDER);
while (elInfo) {
// For the macro element all vertex nodes are set first.
if (elInfo->getLevel() == 0)
for (int i = 0; i < mesh->getGeo(VERTEX); i++)
(*vec)[elInfo->getElement()->getDof(i, 0)] = values[counter++];
if (!elInfo->getElement()->isLeaf()) {
// If no leaf element set the value of the "new" DOF that is created
// by bisectioning of this element.
TEST_EXIT_DBG(counter < values.size())("Should not happen!\n");
(*vec)[elInfo->getElement()->getChild(0)->getDof(mesh->getDim(), 0)] =
values[counter++];
} else {
// On leaf elements set all non vertex values (thus DOFs of higher order
// basis functions).
if (feSpaceHasNonVertexDofs) {
elDofIter.reset(elInfo->getElement());
do {
if (elDofIter.getPosIndex() != VERTEX)
(*vec)[elDofIter.getDof()] = values[counter++];
} while (elDofIter.next());
}
}
elInfo = stack.traverseNext(elInfo);
}
TEST_EXIT_DBG(values.size() == counter)("Should not happen!\n");
}
}
AMDiS/src/MeshStructure.h
View file @ a6bacc8a
......@@ -154,14 +154,32 @@ namespace AMDiS {
/// Returns true, if the given mesh structure code is equal to this one.
bool compare(MeshStructure &other);
void getMeshStructureValues(Mesh *mesh,
int macroElIndex,
/** \brief
* Creates a value array of a given DOFVector. This value array corresponds
* to the mesh structure code of the element and thus can easily be used
* to reconstruct the values of the DOFVector on the same element (e.g., after
* the mesh and the value array has been redistributed in parallel
* computations).
*
* \param[in] macroElIndex Index of the macro element for which the value
* structure code must be created.
* \param[in] vec DOFVector to be used for creating the value code.
* \param[out] values Resulting value structure code.
*/
void getMeshStructureValues(int macroElIndex,
const DOFVector<double>* vec,
std::vector<double>& values);
void setMeshStructureValues(Mesh *mesh,
int macroElIndex,
/** \brief
* Uses a value structure code, e.g. created by \ref getMeshStructureValues,
* to reconstruct the data of a DOFVector on a given macro element.
*
* \param[in] macroElIndex Macro element index the code is related to.
* \param[out] vec DOFVector that should be reconstructed.
* \param[in] values Value structure code.
*/
void setMeshStructureValues(int macroElIndex,
DOFVector<double>* vec,
const std::vector<double>& values);
......
AMDiS/src/Tetrahedron.cc
View file @ a6bacc8a
......@@ -202,22 +202,27 @@ namespace AMDiS {
void Tetrahedron::getNodeDofs(const FiniteElemSpace* feSpace,
BoundaryObject bound,
DofContainer& dofs) const
DofContainer& dofs,
bool baseDofPtr) const
{
FUNCNAME("Tetrahedron::getNodeDofs()");
switch (bound.subObj) {
case VERTEX:
{
int n0 = feSpace->getAdmin()->getNumberOfPreDofs(VERTEX);