Skip to content

GitLab

Commit c520ca87 authored by Thomas Witkowski's avatar Thomas Witkowski
Browse files

Work on pdd and some other small code refactorings.

parent 073ad4f8
Expand all Hide whitespace changes
Inline Side-by-side
Showing with 546 additions and 614 deletions
AMDiS/libtool
View file @ c520ca87
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host p1d062:
# Libtool was configured on host p2q004:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -6760,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host p1d062:
# Libtool was configured on host p2q004:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7065,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host p1d062:
# Libtool was configured on host p2q004:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......
AMDiS/src/AMDiS.h
View file @ c520ca87
......@@ -84,7 +84,6 @@
#include "SystemVector.h"
#include "TecPlotWriter.h"
#include "Tetrahedron.h"
#include "TimedObject.h"
#include "Traverse.h"
#include "Triangle.h"
#include "ValueWriter.h"
......
AMDiS/src/DOFAdmin.h
View file @ c520ca87
......@@ -213,7 +213,7 @@ namespace AMDiS {
/// Sets \ref firstHole
inline void setFirstHole(int i)
{
TEST_EXIT_DBG(!dofFree[i])("There is no hole!\n");
TEST_EXIT_DBG(dofFree[i])("There is no hole!\n");
firstHole = i;
}
......
AMDiS/src/DOFMatrix.cc
View file @ c520ca87
......@@ -216,7 +216,8 @@ namespace AMDiS {
applyDBCs.insert(static_cast<int>(row));
#endif
}
} else
} else {
for (int j = 0; j < nCol; j++) { // for all columns
DegreeOfFreedom col = colIndices[j];
double entry = elMat[i][j];
......@@ -224,8 +225,9 @@ namespace AMDiS {
if (add)
ins[row][col] += sign * entry;
else
ins[row][col] = sign * entry;
ins[row][col] = sign * entry;
}
}
}
}
......@@ -250,18 +252,6 @@ namespace AMDiS {
(*it)->getElementMatrix(elInfo, elementMatrix, *factorIt ? **factorIt : 1.0);
addElementMatrix(factor, elementMatrix, bound, elInfo, NULL);
// if (MPI::COMM_WORLD.Get_rank() == 0 && elInfo->getElement()->getIndex() == 53) {
// std::cout << elementMatrix << std::endl;
// rowFESpace->getBasisFcts()->getLocalIndicesVec(elInfo->getElement(),
// rowFESpace->getAdmin(),
// &rowIndices);
// rowIndices.print();
// print();
// }
}
void DOFMatrix::assemble(double factor, ElInfo *elInfo, const BoundaryType *bound,
......
AMDiS/src/ParallelDomainProblem.cc
View file @ c520ca87
This diff is collapsed.
AMDiS/src/ParallelDomainProblem.h
View file @ c520ca87
......@@ -130,6 +130,18 @@ namespace AMDiS {
/// Removes all macro elements from the mesh that are not part of ranks partition.
void removeMacroElements();
/** \brief
* Creates from a macro mesh a correct local and global DOF index numbering.
*
* @param[out] rankDOFs Returns all DOFs from the macro mesh, which are owned
* by the rank after partitioning the macro mesh.
* @param[out] boundaryDOFs Returns all DOFs from the macro mesh, which lies at
* an interior boundary of the rank. This object maps
* each such DOF to the rank that owns this DOF.
* @param[out] nRankDOFs Number of DOFs owned by rank.
* @param[out] nOverallDOFs Number of all DOFs in macro mesh.
*/
void createLocalGlobalNumbering(std::vector<const DegreeOfFreedom*>& rankDOFs,
std::map<const DegreeOfFreedom*, int>& boundaryDOFs,
int& nRankDOFs,
......@@ -138,8 +150,7 @@ namespace AMDiS {
void updateLocalGlobalNumbering(int& nRankDOFs, int& nOverallDOFs);
void addAllDOFs(Element *el, int ithEdge,
std::vector<const DegreeOfFreedom*>& dofs,
bool addVertices = true);
std::vector<const DegreeOfFreedom*>& dofs);
/** \brief
* This function traverses the whole mesh, i.e. before it is really partitioned,
......@@ -220,6 +231,12 @@ namespace AMDiS {
/// Number of DOFs in the rank mesh.
int nRankDOFs;
/** \brief
* Set of all interior boundary DOFs in ranks partition. The object maps to
* each such DOF to the number of the rank that owns this DOF.
*/
std::map<const DegreeOfFreedom*, int> boundaryDOFs;
/** \brief
* Defines the interior boundaries of the domain that result from partitioning
* the whole mesh. Contains only the boundaries, which are owned by the rank, i.e.,
......@@ -240,13 +257,13 @@ namespace AMDiS {
* This map contains for each rank the list of dofs the current rank must send
* to exchange solution dofs at the interior boundaries.
*/
std::map<int, std::vector<DegreeOfFreedom> > sendDofs;
std::map<int, std::vector<const DegreeOfFreedom*> > sendDofs;
/** \brief
* This map contains for each rank the list of dofs from which the current rank
* must receive solution values of dofs at the interior boundaries.
*/
std::map<int, std::vector<DegreeOfFreedom> > recvDofs;
std::map<int, std::vector<const DegreeOfFreedom*> > recvDofs;
/// Maps local to global dof indices.
std::map<DegreeOfFreedom, DegreeOfFreedom> mapLocalGlobalDOFs;
......
AMDiS/src/SurfaceOperator.h
View file @ c520ca87
......@@ -100,21 +100,14 @@ namespace AMDiS {
{
coords_ = coords;
if (quad2) {
if (quad2)
quad2->scaleSurfaceQuadrature(coords);
}
if (quad1GrdPsi) {
if (quad1GrdPsi)
quad1GrdPsi->scaleSurfaceQuadrature(coords);
}
if (quad1GrdPhi) {
if (quad1GrdPhi)
quad1GrdPhi->scaleSurfaceQuadrature(coords);
}
if (quad0) {
if (quad0)
quad0->scaleSurfaceQuadrature(coords);
}
}
/** \brief
......@@ -126,16 +119,14 @@ namespace AMDiS {
ElementMatrix& userMat,
double factor = 1.0)
{
int i;
int dim = rowFESpace->getMesh()->getDim();
double origDet = elInfo->getDet();
FixVec<WorldVector<double>, VERTEX> worldCoords(dim-1, NO_INIT);
// transform barycentric coords to world coords
for(i = 0; i < dim; i++) {
for (int i = 0; i < dim; i++)
elInfo->coordToWorld(coords_[i], worldCoords[i]);
}
// set determinant for world coords of the side
const_cast<ElInfo*>(elInfo)->setDet(elInfo->calcDet(worldCoords));
......@@ -177,9 +168,7 @@ namespace AMDiS {
protected:
VectorOfFixVecs<DimVec<double> > coords_;
/** \brief
* Surface quadratures
*/
/// Surface quadratures
SurfaceQuadrature *quad2;
SurfaceQuadrature *quad1GrdPsi;
SurfaceQuadrature *quad1GrdPhi;
......
AMDiS/src/SurfaceQuadrature.cc
View file @ c520ca87
......@@ -5,8 +5,6 @@
namespace AMDiS {
//std::list<SurfaceQuadrature*> SurfaceQuadrature::surfaceQuadratureList;
SurfaceQuadrature::SurfaceQuadrature(Quadrature *quad,
VectorOfFixVecs<DimVec<double> > &coords)
: Quadrature((quad->getName() + " surface").c_str(),
......@@ -18,69 +16,39 @@ namespace AMDiS {
quad_(quad),
coords_(coords)
{
int i, j, k;
// copy coords
// coords_ = new DimVec<double>[dim](dim, NO_INIT);
// for(i = 0; i < dim; i++) {
// coords_[i] = coords[i];
// }
lambda = new VectorOfFixVecs<DimVec<double> >(dim, n_points, NO_INIT);
// for each integration point
for(i=0; i < n_points; i++) {
for (int i = 0; i < n_points; i++) {
// get coords of quadrature point in dim-1
DimVec<double> origin = quad->getLambda(i);
for(j=0; j < dim+1; j++)
for (int j = 0; j < dim + 1; j++)
(*lambda)[i][j] = 0.0;
for(j = 0; j < dim; j++) {
for(k = 0; k < dim+1; k++) {
for (int j = 0; j < dim; j++)
for (int k = 0; k < dim + 1; k++)
(*lambda)[i][k] += origin[j] * coords_[j][k];
}
}
// // create barycentric coords for dim
// if(dim > 1) {
// for (j = 0; j < side; j++)
// (*lambda)[i][j] = origin[j];
// (*lambda)[i][side] = 0.0;
// for (j = side+1; j <= dim; j++)
// (*lambda)[i][j] = origin[j-1];
// } else {
// (*lambda)[i][side] = 1.0;
// (*lambda)[i][1-side] = 0.0;
// }
}
}
void
SurfaceQuadrature::scaleSurfaceQuadrature(VectorOfFixVecs<DimVec<double> >&coords)
void SurfaceQuadrature::scaleSurfaceQuadrature(VectorOfFixVecs<DimVec<double> >&coords)
{
int i, j, k;
// copy coords
for(i = 0; i < dim; i++) {
for (int i = 0; i < dim; i++)
coords_[i] = coords[i];
}
// for each integration point
for(i=0; i < n_points; i++) {
for (int i = 0; i < n_points; i++) {
// get coords of quadrature point in dim-1
DimVec<double> origin = quad_->getLambda(i);
for(j=0; j < dim+1; j++)
for (int j = 0; j < dim + 1; j++)
(*lambda)[i][j] = 0.0;
for(j = 0; j < dim; j++) {
for(k = 0; k < dim+1; k++) {
for (int j = 0; j < dim; j++)
for (int k = 0; k < dim+1; k++)
(*lambda)[i][k] += origin[j] * coords_[j][k];
}
}
}
}
......
AMDiS/src/SurfaceQuadrature.h
View file @ c520ca87
......@@ -39,36 +39,21 @@ namespace AMDiS {
class SurfaceQuadrature : public Quadrature
{
public:
/** \brief
* Constructs a SurfaceQuadrature based on a standard Quadrature of dim-1.
*/
/// Constructs a SurfaceQuadrature based on a standard Quadrature of dim-1.
SurfaceQuadrature(Quadrature *quad, VectorOfFixVecs<DimVec<double> >& coords);
/** \brief
* Destructor.
*/
/// Destructor.
~SurfaceQuadrature()
{}
/** \brief
* Adapts SurfaceQuadrature to \ref coords.
*/
/// Adapts SurfaceQuadrature to \ref coords.
void scaleSurfaceQuadrature(VectorOfFixVecs<DimVec<double> > &coords);
protected:
/** \brief
* Pointer to the original quadrature
*/
/// Pointer to the original quadrature
Quadrature *quad_;
VectorOfFixVecs<DimVec<double> > coords_;
/** \brief
* List of all existing surface quadratures. Used by
* \ref provideSurfaceQuadrature(). If the needed quadrature is not in the
* list, a new list entry is created.
*/
//static std::list<SurfaceQuadrature*> surfaceQuadratureList;
};
}
......
AMDiS/src/SurfaceRegion_ED.h
View file @ c520ca87
......@@ -31,7 +31,7 @@ namespace AMDiS {
{
public:
inline bool isOfType(int typeID) const {
if(typeID == SURFACE_REGION)
if (typeID == SURFACE_REGION)
return true;
return false;
}
......@@ -39,7 +39,8 @@ namespace AMDiS {
class Creator : public CreatorInterface<ElementData>
{
public:
ElementData* create() {
ElementData* create()
{
return new SurfaceRegion_ED;
}
};
......@@ -61,7 +62,7 @@ namespace AMDiS {
SurfaceRegion_ED *surfaceRegion;
sideOfChild = parent->getSideOfChild(0, side_, elType);
if(sideOfChild >= 0) {
if (sideOfChild >= 0) {
surfaceRegion = new SurfaceRegion_ED(child1->getElementData());
surfaceRegion->setSide(sideOfChild);
surfaceRegion->setRegion(region_);
......@@ -69,7 +70,7 @@ namespace AMDiS {
}
sideOfChild = parent->getSideOfChild(1, side_, elType);
if(sideOfChild >= 0) {
if (sideOfChild >= 0) {
surfaceRegion = new SurfaceRegion_ED(child2->getElementData());
surfaceRegion->side_ = sideOfChild;
surfaceRegion->region_ = region_;
......@@ -77,41 +78,60 @@ namespace AMDiS {
}
return false;
};
}
ElementData *clone() const {
ElementData *clone() const
{
SurfaceRegion_ED *newObj = new SurfaceRegion_ED;
newObj->side_ = side_;
newObj->region_ = region_;
newObj->decorated_ = ElementData::clone();
return newObj;
};
}
inline std::string getTypeName() const { return "SurfaceRegion_ED"; };
inline std::string getTypeName() const
{
return "SurfaceRegion_ED";
}
inline const int getTypeID() const { return SURFACE_REGION; };
inline const int getTypeID() const
{
return SURFACE_REGION;
}
void serialize(std::ostream& out)
{
ElementData::serialize(out);
out.write(reinterpret_cast<const char*>(&side_), sizeof(int));
out.write(reinterpret_cast<const char*>(&region_), sizeof(int));
};
}
void deserialize(std::istream& in)
{
ElementData::deserialize(in);
in.read(reinterpret_cast<char*>(&side_), sizeof(int));
in.read(reinterpret_cast<char*>(&region_), sizeof(int));
};
}
inline void setSide(int side) { side_ = side; };
inline void setSide(int side)
{
side_ = side;
}
inline int getSide() const { return side_; };
inline int getSide() const
{
return side_;
}
inline void setRegion(int region) { region_ = region; };
inline void setRegion(int region)
{
region_ = region;
}
inline int getRegion() const { return region_; };
inline int getRegion() const
{
return region_;
}
protected:
int side_;
......
AMDiS/src/SystemVector.h
View file @ c520ca87
......@@ -30,22 +30,15 @@
namespace AMDiS {
/** \brief
* A system vector is a vector of dof vectors used for vector valued
* problems.
*/
/// A system vector is a vector of dof vectors used for vector valued problems.
class SystemVector : public Serializable
{
public:
/** \brief
* Creator.
*/
/// Creator.
class Creator
: public CreatorInterface<SystemVector> {
public:
/** \brief
* Creators constructor.
*/
/// Creators constructor.
Creator(const std::string &name_,
std::vector<FiniteElemSpace*> feSpace_,
int size_)
......@@ -54,15 +47,12 @@ namespace AMDiS {
size(size_)
{}
/** \brief
* Destructor
*/
/// Destructor
virtual ~Creator() {}
/** \brief
* Implementation of CreatorInterface::create().
*/
SystemVector *create() {
/// Implementation of CreatorInterface::create().
SystemVector *create()
{
char number[10];
std::string numberedName;
SystemVector *result = new SystemVector(name, feSpace, size);
......@@ -74,10 +64,9 @@ namespace AMDiS {
return result;
}
/** \brief
* Implementation of CreatorInterface::free().
*/
void free(SystemVector *vec) {
/// Implementation of CreatorInterface::free().
void free(SystemVector *vec)
{
for (int i = 0; i < size; i++) {
delete vec->getDOFVector(i);
vec->setDOFVector(i, NULL);
......@@ -86,26 +75,18 @@ namespace AMDiS {
}
private:
/** \brief
* Name of the system vector
*/
/// Name of the system vector
std::string name;
/** \brief
* Finite element space used for creation.
*/
/// Finite element space used for creation.
std::vector<FiniteElemSpace*> feSpace;
/** \brief
* Number of component vectors to be created
*/
/// Number of component vectors to be created
int size;
};
public:
/** \brief
* Constructor.
*/
/// Constructor.
SystemVector(const std::string& name_,
std::vector<FiniteElemSpace*> feSpace_,
int size)
......@@ -117,92 +98,80 @@ namespace AMDiS {
vectors.set(NULL);
}
/** \brief
* Copy Constructor.
*/
/// Copy Constructor.
SystemVector(const SystemVector& rhs)
: name(rhs.name),
feSpace(rhs.feSpace),
vectors(rhs.vectors.getSize())
{
for (int i = 0; i < vectors.getSize(); i++) {
for (int i = 0; i < vectors.getSize(); i++)
vectors[i] = new DOFVector<double>(*rhs.vectors[i]);
}
}
~SystemVector()
{
for (int i = 0; i < vectors.getSize(); i++) {
for (int i = 0; i < vectors.getSize(); i++)
delete vectors[i];
}
}
void createNewDOFVectors(std::string name)
{
for (int i = 0; i < vectors.getSize(); i++) {
for (int i = 0; i < vectors.getSize(); i++)
vectors[i] = new DOFVector<double>(feSpace[i], "tmp");
}
}
/** \brief
* Sets \ref vectors[index] = vec.
*/
inline void setDOFVector(int index, DOFVector<double> *vec) {
/// Sets \ref vectors[index] = vec.
inline void setDOFVector(int index, DOFVector<double> *vec)
{
TEST_EXIT_DBG(index < vectors.getSize())("invalid index\n");
vectors[index] = vec;
}
/** \brief
* Returns \ref vectors[index].
*/
inline DOFVector<double> *getDOFVector(int index) {
/// Returns \ref vectors[index].
inline DOFVector<double> *getDOFVector(int index)
{
TEST_EXIT_DBG(index < vectors.getSize())("invalid index\n");
return vectors[index];
}
/** \brief
* Returns \ref vectors[index].
*/
inline const DOFVector<double> *getDOFVector(int index) const {
/// Returns \ref vectors[index].
inline const DOFVector<double> *getDOFVector(int index) const
{
TEST_EXIT_DBG(index < vectors.getSize())("invalid index\n");
return vectors[index];
}
/** \brief
* Returns sum of used vector sizes.
*/
inline int getUsedSize() const {
/// Returns sum of used vector sizes.
inline int getUsedSize() const
{
int totalSize = 0;
int size = vectors.getSize();
for (int i = 0; i < size; i++) {
for (int i = 0; i < size; i++)
totalSize += vectors[i]->getUsedSize();
}
return totalSize;
}
/** \brief
* Returns number of contained vectors.
*/
inline int getNumVectors() const {
/// Returns number of contained vectors.
inline int getNumVectors() const
{