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Commit f8e4f05c authored by Thomas Witkowski's avatar Thomas Witkowski
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Work on parallel jump residuum. Is working, but source code must be improved.

parent 59a6d168
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AMDiS/src/AdaptInfo.h
View file @ f8e4f05c
......@@ -389,24 +389,12 @@ namespace AMDiS {
/// Sets \ref est_sum.
inline void setEstSum(double e, int index)
{
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
double send_est_sum = e;
double est_sum = 0.0;
MPI::COMM_WORLD.Allreduce(&send_est_sum, &est_sum, 1, MPI_DOUBLE, MPI_SUM);
e = est_sum;
#endif
scalContents[index]->est_sum = e;
}
/// Sets \ref est_max.
inline void setEstMax(double e, int index)
{
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
double send_est_max = e;
double est_max = 0.0;
MPI::COMM_WORLD.Allreduce(&send_est_max, &est_max, 1, MPI_DOUBLE, MPI_MAX);
e = est_max;
#endif
scalContents[index]->est_max = e;
}
......
AMDiS/src/BoundaryObject.cc
View file @ f8e4f05c
......@@ -128,6 +128,19 @@ namespace AMDiS {
}
bool BoundaryObject::operator<(const BoundaryObject& other) const
{
if (elIndex == other.elIndex) {
if (subObj == other.subObj)
return ithObj < other.ithObj;
return subObj < other.subObj;
}
return (elIndex < other.elIndex);
}
bool AtomicBoundary::operator==(const AtomicBoundary& other) const
{
return (rankObj == other.rankObj &&
......
AMDiS/src/BoundaryObject.h
View file @ f8e4f05c
......@@ -55,6 +55,8 @@ namespace AMDiS {
bool operator!=(const BoundaryObject& other) const;
bool operator<(const BoundaryObject& other) const;
/// The macro element to which the boundary element corresponds to.
Element* el;
......@@ -64,11 +66,9 @@ namespace AMDiS {
/// Element type index, only used in 3d.
int elType;
/** \brief
* Defines the geometrical object at the boundary. It must be "a part" of the
* macro element \ref el, i.e., either 1 (a vertex), 2 (an edge) or 3
* (a face).
*/
/// Defines the geometrical object at the boundary. It must be "a part" of
/// the macro element \ref el, i.e., either 1 (a vertex), 2 (an edge) or 3
/// (a face).
GeoIndex subObj;
/** \brief
......
AMDiS/src/ElInfo.h
View file @ f8e4f05c
......@@ -472,41 +472,29 @@ namespace AMDiS {
/// \ref element is child of element parent
Element *parent;
/** \brief
* \ref element is an element of the binary tree located at MacroElement
* macroElement
*/
/// \ref element is an element of the binary tree located at MacroElement
/// macroElement
MacroElement *macroElement;
/** \brief
* Indicates wich elements will be called and wich information should be
* present while mesh traversal.
*/
/// Indicates wich elements will be called and wich information should be
/// present while mesh traversal.
Flag fillFlag;
/** \brief
* Level of the element. The level is zero for macro elements and the level
* of the children is (level of the parent + 1). level_ is filled always by
* the traversal routines.
*/
/// Level of the element. The level is zero for macro elements and the level
/// of the children is (level of the parent + 1). level_ is filled always by
/// the traversal routines.
unsigned char level;
/** \brief
* Elements type index. This is used only for 3d, where type can be either 0, 1 or
* 2. In all other cases type is not used and the variable is set to 0.
* In 3d, it is filled automatically by the traversal routines.
*/
/// Elements type index. This is used only for 3d, where type can be either 0, 1 or
/// 2. In all other cases type is not used and the variable is set to 0.
/// In 3d, it is filled automatically by the traversal routines.
int elType;
/** \brief
* This ElInfo is the iChild-th child of the parent element.
*/
/// This ElInfo is the iChild-th child of the parent element.
int iChild;
/** \brief
* \ref coord[i] is a WorldVector<double> storing the world coordinates of the
* i-th vertex of element \ref element.
*/
/// \ref coord[i] is a WorldVector<double> storing the world coordinates of the
/// i-th vertex of element \ref element.
FixVec<WorldVector<double>, VERTEX> coord;
/** \brief
......@@ -518,34 +506,24 @@ namespace AMDiS {
*/
FixVec<BoundaryType, BOUNDARY> boundary;
/** \brief
* Vector storing pointers to projections for each face, edge, vertex.
*/
/// Vector storing pointers to projections for each face, edge, vertex.
FixVec<Projection*, PROJECTION> projection;
/** \brief
* oppCoord[i] coordinates of the i-th neighbour vertex opposite the
* common edge/face.
*/
/// oppCoord[i] coordinates of the i-th neighbour vertex opposite the
/// common edge/face.
FixVec<WorldVector<double>, NEIGH> oppCoord;
/** \brief
* neighbour[i] pointer to the element at the edge/face with local index i.
* It is a pointer to NULL for boundary edges/faces.
*/
/// neighbour[i] pointer to the element at the edge/face with local index i.
/// It is a pointer to NULL for boundary edges/faces.
FixVec<Element*, NEIGH> neighbour;
/** \brief
* neighbourCoord[i][j] are the coordinate of the j-th vertex of the i-th
* neighbour element with the common edge/face.
*/
/// neighbourCoord[i][j] are the coordinate of the j-th vertex of the i-th
/// neighbour element with the common edge/face.
FixVec<FixVec<WorldVector<double>, VERTEX>, NEIGH> neighbourCoord;
/** \brief
* oppVertex[i] is undefined if neighbour[i] is a pointer to NULL.
* Otherwise it is the local index of the neighbour's vertex opposite the
* common edge/face.
*/
/// oppVertex[i] is undefined if neighbour[i] is a pointer to NULL.
/// Otherwise it is the local index of the neighbour's vertex opposite the
/// common edge/face.
FixVec<int, NEIGH> oppVertex;
/// Elements determinant.
......@@ -569,18 +547,14 @@ namespace AMDiS {
static std::vector<std::map<std::pair<int, unsigned long>, mtl::dense2D<double> > > subElemGradMatrices;
/** \brief
* child_vertex[el_type][child][i] = father's local vertex index of new
* vertex i. 4 stands for the newly generated vertex .
*/
/// child_vertex[el_type][child][i] = father's local vertex index of new
/// vertex i. 4 stands for the newly generated vertex .
static const int childVertex[3][2][4];
/** \brief
* child_edge[el_type][child][i] = father's local edge index of new edge i.
* new edge 2 is half of old edge 0, new edges 4,5 are really new edges, and
* value is different: child_edge[][][4,5] = index of same edge in other
* child.
*/
/// child_edge[el_type][child][i] = father's local edge index of new edge i.
/// new edge 2 is half of old edge 0, new edges 4,5 are really new edges, and
/// value is different: child_edge[][][4,5] = index of same edge in other
/// child.
static const int childEdge[3][2][6];
friend class ElInfo1d;
......
AMDiS/src/Marker.cc
View file @ f8e4f05c
......@@ -140,7 +140,7 @@ namespace AMDiS {
markRLimit = ESThetaP * epsP / nLeaves;
markCLimit = ESThetaCP * epsP / nLeaves;
INFO(info, 2)("start mark_limits: %.3le %.3le nt = %d\n",
markRLimit, markCLimit, nLeaves);
}
......
AMDiS/src/ProblemStat.cc
View file @ f8e4f05c
......@@ -1726,11 +1726,12 @@ namespace AMDiS {
map<int, double> vec;
TraverseStack stack;
ElInfo *elInfo = stack.traverseFirst(this->getMesh(comp), -1,
Mesh::CALL_LEAF_EL | Mesh::FILL_COORDS);
ElInfo *elInfo =
stack.traverseFirst(this->getMesh(comp), -1, Mesh::CALL_LEAF_EL);
while (elInfo) {
vec[elInfo->getElement()->getIndex()] = elInfo->getElement()->getEstimation(comp);
vec[elInfo->getElement()->getIndex()] =
elInfo->getElement()->getEstimation(comp);
elInfo = stack.traverseNext(elInfo);
}
......
AMDiS/src/Quadrature.h
View file @ f8e4f05c
......@@ -157,19 +157,15 @@ namespace AMDiS {
/** \brief
* Returns \ref lambda[a][b] which is the b-th coordinate entry of the a-th
* quadrature point
*/
/// Returns \ref lambda[a][b] which is the b-th coordinate entry of the a-th
/// quadrature point
inline double getLambda(int a, int b) const
{
return (lambda ? (*lambda)[a][b] : 0.0);
}
/** \brief
* Returns \ref lambda[a] which is a DimVec<double> containing the
* coordiantes of the a-th quadrature point
*/
/// Returns \ref lambda[a] which is a DimVec<double> containing the
/// coordiantes of the a-th quadrature point
inline const DimVec<double>& getLambda(int a) const
{
return (*lambda)[a];
......@@ -206,10 +202,8 @@ namespace AMDiS {
double *w;
protected:
/** \brief
* Initialisation of all static Quadrature objects which will be returned
* by \ref provideQuadrature()
*/
/// Initialisation of all static Quadrature objects which will be returned
/// by \ref provideQuadrature()
static void initStaticQuadratures();
/** \name static quadratures, used weights, and barycentric coords
......@@ -288,21 +282,15 @@ namespace AMDiS {
/** \brief
* Pre-compute the values of all basis functions at all quadrature nodes;
*/
/// Pre-compute the values of all basis functions at all quadrature nodes;
const Flag INIT_PHI=1;
/** \brief
* Pre-compute the gradients (with respect to the barycentric coordinates) of
* all basis functions at all quadrature nodes
*/
/// Pre-compute the gradients (with respect to the barycentric coordinates) of
/// all basis functions at all quadrature nodes
const Flag INIT_GRD_PHI=2;
/** \brief
* pre-compute all 2nd derivatives (with respect to the barycentric
* coordinates) of all basis functions at all quadrature nodes;
*/
/// pre-compute all 2nd derivatives (with respect to the barycentric
/// coordinates) of all basis functions at all quadrature nodes;
const Flag INIT_D2_PHI=4;
......@@ -325,10 +313,8 @@ namespace AMDiS {
class FastQuadrature
{
protected:
/** \brief
* Constructs a FastQuadrature for the given Quadrature, BasisFunction, and
* flag.
*/
/// Constructs a FastQuadrature for the given Quadrature, BasisFunction, and
/// flag.
FastQuadrature(BasisFunction* basFcts, Quadrature* quad, Flag flag)
: init_flag(flag),
phi(0, 0),
......@@ -481,10 +467,8 @@ namespace AMDiS {
}
protected:
/** \brief
* Specifies which information should be pre-computed. Can be \ref INIT_PHI,
* \ref INIT_GRD_PHI, or \ref INIT_D2_PHI
*/
/// Specifies which information should be pre-computed. Can be \ref INIT_PHI,
/// \ref INIT_GRD_PHI, or \ref INIT_D2_PHI
Flag init_flag;
/** \brief
......@@ -513,16 +497,12 @@ namespace AMDiS {
*/
MatrixOfFixVecs<DimMat<double> > *D2Phi;
/** \brief
* List of all used FastQuadratures
*/
/// List of all used FastQuadratures
static list<FastQuadrature*> fastQuadList;
/** \brief
* Maximal number of quadrature points for all yet initialised FastQuadrature
* objects. This value may change after a new initialisation of a
* FastQuadrature
*/
/// Maximal number of quadrature points for all yet initialised FastQuadrature
/// objects. This value may change after a new initialisation of a
/// FastQuadrature
static int max_points;
/// This FastQuadrature stores values for Quadrature quadrature
......
AMDiS/src/est/ResidualEstimator.cc
View file @ f8e4f05c
......@@ -173,7 +173,6 @@ namespace AMDiS {
InteriorBoundary &intBoundary =
MeshDistributor::globalMeshDistributor->getIntBoundary();
RankToBoundMap& otherBound = intBoundary.getOther();
ElInfo *elInfo = mesh->createNewElInfo();
elInfo->setFillFlag(Mesh::FILL_COORDS);
......@@ -181,56 +180,66 @@ namespace AMDiS {
StdMpi<vector<double> > stdMpiDet(MeshDistributor::globalMeshDistributor->getMpiComm());
StdMpi<vector<vector<WorldVector<double> > > > stdMpiGrdUh(MeshDistributor::globalMeshDistributor->getMpiComm());
for (RankToBoundMap::iterator it = otherBound.begin();
it != otherBound.end(); ++it) {
RankToBoundMap allBounds = intBoundary.getOther();
allBounds.insert(intBoundary.getOwn().begin(), intBoundary.getOwn().end());
for (RankToBoundMap::iterator it = allBounds.begin();
it != allBounds.end(); ++it) {
vector<BoundaryObject> subBound;
for (unsigned int i = 0; i < it->second.size(); i++) {
BoundaryObject &bObj = it->second[i].rankObj;
if (bObj.subObj == VERTEX)
continue;
vector<BoundaryObject> subBound;
bObj.el->getSubBoundary(bObj, subBound);
}
WorldVector<int> faceIndices;
for (unsigned int j = 0; j < subBound.size(); j++) {
Element *el = subBound[j].el;
int oppV = subBound[j].ithObj;
elInfo->setElement(el);
el->sortFaceIndices(oppV, faceIndices);
elInfo->getCoord(oppV) = coords[el->getDof(oppV, 0)];
for (int k = 0; k < dim; k++)
elInfo->getCoord(faceIndices[k]) = coords[el->getDof(k, 0)];
double detNeigh = abs(elInfo->calcGrdLambda(*lambdaNeigh));
stdMpiDet.getSendData(it->first).push_back(detNeigh);
for (int system = 0; system < nSystems; system++) {
if (matrix[system] == NULL || secondOrderTerms[system] == false)
continue;
uh[system]->getLocalVector(el, uhNeigh[system]);
for (int iq = 0; iq < nPointsSurface; iq++) {
if (subBound.size() == 0)
continue;
(*lambda)[oppV] = 0.0;
for (int k = 0; k < dim; k++)
(*lambda)[faceIndices[k]] = surfaceQuad->getLambda(iq, k);
WorldVector<int> faceIndices;
basFcts[system]->evalGrdUh(*lambda, *lambdaNeigh, uhNeigh[system], grdUhNeigh[iq]);
}
for (unsigned int i = 0; i < subBound.size(); i++) {
Element *el = subBound[i].el;
int oppV = subBound[i].ithObj;
elInfo->setElement(el);
el->sortFaceIndices(oppV, faceIndices);
for (int k = 0; k <= dim; k++)
elInfo->getCoord(k) = coords[el->getDof(k, 0)];
double detNeigh = abs(elInfo->calcGrdLambda(*lambdaNeigh));
stdMpiDet.getSendData(it->first).push_back(detNeigh);
stdMpiGrdUh.getSendData(it->first).push_back(grdUhNeigh);
for (int system = 0; system < nSystems; system++) {
if (matrix[system] == NULL || secondOrderTerms[system] == false)
continue;
uh[system]->getLocalVector(el, uhNeigh[system]);
for (int iq = 0; iq < nPointsSurface; iq++) {
(*lambda)[oppV] = 0.0;
for (int k = 0; k < dim; k++)
(*lambda)[faceIndices[k]] = surfaceQuad->getLambda(iq, k);
basFcts[system]->evalGrdUh(*lambda, *lambdaNeigh, uhNeigh[system], grdUhNeigh[iq]);
}
stdMpiGrdUh.getSendData(it->first).push_back(grdUhNeigh);
}
}
stdMpiDet.recv(it->first);
stdMpiGrdUh.recv(it->first);
}
stdMpiDet.updateSendDataSize();
stdMpiGrdUh.updateSendDataSize();
#if 0
RankToBoundMap& ownBound = intBoundary.getOwn();
for (RankToBoundMap::iterator it = ownBound.begin();
......@@ -245,13 +254,14 @@ namespace AMDiS {
}
}
}
#endif
stdMpiDet.startCommunication();
stdMpiGrdUh.startCommunication();
for (RankToBoundMap::iterator it = ownBound.begin();
it != ownBound.end(); ++it) {
for (RankToBoundMap::iterator it = allBounds.begin();
it != allBounds.end(); ++it) {
vector<BoundaryObject> subBound;
for (unsigned int i = 0; i < it->second.size(); i++) {
......@@ -270,6 +280,11 @@ namespace AMDiS {
TEST_EXIT_DBG(subBound.size() == stdMpiGrdUh.getRecvData(it->first).size())
("Should not happen!\n");
for (unsigned int i = 0; i < subBound.size(); i++) {
elBoundDet[subBound[i]] = stdMpiDet.getRecvData(it->first)[i];
elBoundGrdUhNeigh[subBound[i]] = stdMpiGrdUh.getRecvData(it->first)[i];
}
}
MSG("INIT PARALLEL FINISCHED!\n");
......@@ -482,20 +497,41 @@ namespace AMDiS {
const DimVec<WorldVector<double> > &grdLambda = elInfo->getGrdLambda();
double det = elInfo->getDet();
double h2 = h2_from_det(det, dim);
BoundaryObject blub;
for (int face = 0; face < nNeighbours; face++) {
Element *neigh = const_cast<Element*>(elInfo->getNeighbour(face));
bool parallelMode = false;
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
if (neigh == NULL) {
BoundaryObject testObj(el, elInfo->getType(), EDGE, face);
if (elBoundDet.count(testObj)) {
parallelMode = true;
blub = testObj;
} else {
continue;
}
}
if (!parallelMode && !(neigh && neigh->getMark()))
continue;
#else
if (!(neigh && neigh->getMark()))
continue;
#endif
int oppV = elInfo->getOppVertex(face);
int oppV = elInfo->getOppVertex(face);
el->sortFaceIndices(face, faceIndEl);
neigh->sortFaceIndices(oppV, faceIndNeigh);
neighInfo->setElement(const_cast<Element*>(neigh));
neighInfo->setFillFlag(Mesh::FILL_COORDS);
neighInfo->getCoord(oppV) = elInfo->getOppCoord(face);
if (!parallelMode) {
neigh->sortFaceIndices(oppV, faceIndNeigh);
neighInfo->setElement(const_cast<Element*>(neigh));
neighInfo->setFillFlag(Mesh::FILL_COORDS);
neighInfo->getCoord(oppV) = elInfo->getOppCoord(face);
}
// periodic leaf data ?
ElementData *ldp = el->getElementData()->getElementData(PERIODIC);
......@@ -526,7 +562,7 @@ namespace AMDiS {
}
} // if (ldp)
if (!periodicCoords) {
if (!periodicCoords && !parallelMode) {
for (int i = 0; i < dim; i++) {
int i1 = faceIndEl[i];
int i2 = faceIndNeigh[i];
......@@ -534,11 +570,19 @@ namespace AMDiS {
}
}
double detNeigh = 0.0;
Parametric *parametric = mesh->getParametric();
if (parametric)
neighInfo = parametric->addParametricInfo(neighInfo);
if (!parallelMode) {
if (parametric)
neighInfo = parametric->addParametricInfo(neighInfo);
double detNeigh = abs(neighInfo->calcGrdLambda(*lambdaNeigh));
detNeigh = abs(neighInfo->calcGrdLambda(*lambdaNeigh));
} else {
TEST_EXIT_DBG(!parametric)("No yet implemented!\n");
detNeigh = elBoundDet[blub];
}
for (int iq = 0; iq < nPointsSurface; iq++)
jump[iq].set(0.0);
......@@ -548,7 +592,8 @@ namespace AMDiS {
continue;
uh[system]->getLocalVector(el, uhEl[system]);
uh[system]->getLocalVector(neigh, uhNeigh[system]);
if (!parallelMode)
uh[system]->getLocalVector(neigh, uhNeigh[system]);
for (int iq = 0; iq < nPointsSurface; iq++) {
(*lambda)[face] = 0.0;
......@@ -556,12 +601,18 @@ namespace AMDiS {
(*lambda)[faceIndEl[i]] = surfaceQuad->getLambda(iq, i);
basFcts[system]->evalGrdUh(*lambda, grdLambda, uhEl[system], grdUhEl[iq]);
if (!parallelMode) {
(*lambda)[oppV] = 0.0;
for (int i = 0; i < dim; i++)
(*lambda)[faceIndNeigh[i]] = surfaceQuad->getLambda(iq, i);
basFcts[system]->evalGrdUh(*lambda, *lambdaNeigh, uhNeigh[system], grdUhNeigh[iq]);
} else {
grdUhNeigh[iq] = elBoundGrdUhNeigh[blub][iq];
}
(*lambda)[oppV] = 0.0;
for (int i = 0; i < dim; i++)
(*lambda)[faceIndNeigh[i]] = surfaceQuad->getLambda(iq, i);
basFcts[system]->evalGrdUh(*lambda, *lambdaNeigh, uhNeigh[system], grdUhNeigh[iq]);
grdUhEl[iq] -= grdUhNeigh[iq];
} // for iq
......@@ -599,11 +650,13 @@ namespace AMDiS {
val *= C1 * h2_from_det(d, dim) * d;
else
val *= C1 * d;
if (parametric)
neighInfo = parametric->removeParametricInfo(neighInfo);
neigh->setEstimation(neigh->getEstimation(row) + val, row);
if (!parallelMode) {
if (parametric)
neighInfo = parametric->removeParametricInfo(neighInfo);
neigh->setEstimation(neigh->getEstimation(row) + val, row);
}
result += val;
} // for face
......
AMDiS/src/est/ResidualEstimator.h
View file @ f8e4f05c
......@@ -188,6 +188,12 @@ namespace AMDiS {
/// are used to ommit computations of the jump residual that is defined
/// only on second order terms.
std::vector<bool> secondOrderTerms;
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
map<BoundaryObject, double> elBoundDet;
map<BoundaryObject, std::vector<WorldVector<double> > > elBoundGrdUhNeigh;
#endif
};
}
......
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