templates for debian packaging added

AUTHORS

+2004-2007 Simon Vey
+2007-2012 Thomas Witkowski
+2008-2013 Peter Gottschling <peter.gottschling@simunova.com>
+2008-2016 Rainer Backofen <rainer.backofen@tu-dresden.de>
+2009-2016 Andreas Naumann <andreas.naumann@tu-dresden.de>
+2010-2016 Simon Praetorius <simon.praetorius@tu-dresden.de>
+2014-2016 Siqi Ling <lsq0473@gmail.com>
\ No newline at end of file

CHANGELOG

+amdis (1.1~rc1-1) UNRELEASED; urgency=medium
+
+  * CMake configuration redesigned
+  * ARH3 reader corrected to parse .parh files correctly
+  * Macro DEBUG removed in favor of NDEBUG
+  * Compatibility with PETSc version 3.7
+  * Functor expressions with arbitrary nr. of arguments
+  * Reimplementation of periodic boundary conditions
+  * build scripts for linux and windows
+  * DirichletBC accepting expressions as value
+  * Resenbrock time-discretization in parallel
+
+ -- Simon Praetorius <simon.praetorius@tu-dresden.de>  Mon, 31 Oct 2016 10:46:58 +0100
\ No newline at end of file

tools/build_parallel_amdis.sh

-#! /bin/bash
-
-ROOT=${PWD}
-POSTFIX="par_rel"
-CONFIURATION="Release"
-
-if [ "$1" == "Debug" ]; then
-  POSTFIX="par_dbg"
-  CONFIURATION="Debug"
-fi
-
-# at first build AMDiS
-cmake -E make_directory ${ROOT}/build_${POSTFIX}
-cmake -E chdir ${ROOT}/build_${POSTFIX} cmake \
-      -DCMAKE_INSTALL_PREFIX=${ROOT}/install_${POSTFIX} \
-      -DCMAKE_BUILD_TYPE=${CONFIURATION} \
-      -DENABLE_CXX11:BOOL=ON \
-      -DENABLE_COMPRESSION:BOOL=OFF \
-      -DENABLE_UMFPACK:BOOL=OFF \
-      -DENABLE_EXTENSIONS:BOOL=ON \
-      -DENABLE_PARALLEL_DOMAIN:BOOL=ON \
-       ${ROOT}/AMDiS
-cmake --build ${ROOT}/build_${POSTFIX} --target install -- -j4
-
-# now build the demos
-BASEDIR=${ROOT}/demo
-cmake -E make_directory ${BASEDIR}/build_${POSTFIX}
-cmake -E chdir ${BASEDIR}/build_${POSTFIX} cmake \
-      -DAMDIS_DIR=${ROOT}/install_${POSTFIX}/share/amdis \
-      -DCMAKE_BUILD_TYPE=${CONFIURATION} \
-      -DCOMPONENT=PARALLEL \
-       ${BASEDIR}
-cmake --build ${BASEDIR}/build_${POSTFIX}
-
-# now build and run the test_suite
-BASEDIR=${ROOT}/test
-cmake -E make_directory ${BASEDIR}/build_${POSTFIX}
-cmake -E chdir ${BASEDIR}/build_${POSTFIX} cmake \
-      -DAMDIS_DIR=${ROOT}/install_${POSTFIX}/share/amdis \
-      -DCMAKE_BUILD_TYPE=${CONFIURATION} \
-      -DCOMPONENT=PARALLEL \
-       ${BASEDIR}
-cmake --build ${BASEDIR}/build_${POSTFIX}
-cmake --build ${BASEDIR}/build_${POSTFIX} --target test

tools/packaging/debian/CPackOptions.cmake.in

+set(CPACK_PACKAGE_NAME    "@PACKAGE_NAME@")
+set(CPACK_PACKAGE_VERSION "1.1~rc1")
+SET(CPACK_PACKAGE_VERSION_MAJOR "1")
+SET(CPACK_PACKAGE_VERSION_MINOR "1")
+SET(CPACK_PACKAGE_VERSION_PATCH "0")
+set(CPACK_PACKAGE_CONTACT "Simon Praetorius <simon.praetorius@tu-dresden.de>")
+
+set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "A C++ library to solve a broad class of PDEs using adaptive finite elements.")
+set(CPACK_PACKAGE_DESCRIPTION_FILE "@CMAKE_SOURCE_DIR@/README.md")
+set(CPACK_PACKAGE_DESCRIPTION "Adaptive MultiDimensional Simulations (AMDiS) is a C++ library
+ to solve a broad class of partial differential equations (PDEs) using
+ adaptive finite elements.")
+
+set(CPACK_RESOURCE_FILE_LICENSE "@CMAKE_SOURCE_DIR@/LICENSE")
+set(CPACK_RESOURCE_FILE_README  "@CMAKE_SOURCE_DIR@/README.md")
+
+set(CPACK_PACKAGE_FILE_NAME "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION}")

tools/packaging/debian/create_package.cmake

+# Command line arguments:
+#   CONFIG = [Debug|Release]
+#   COMPONENT = [SEQUENTIAL|PARALLEL]
+
+set(PACKAGE_NAME "libamdis")
+
+if ("${COMPONENT}" STREQUAL "PARALLEL")
+  set(PACKAGE_NAME "${PACKAGE_NAME}-par")
+  set(ADDITIONAL_FLAGS "-DENABLE_UMFPACK:BOOL=OFF -DENABLE_PARALLEL_DOMAIN:BOOL=ON")
+else ()
+  set(ADDITIONAL_FLAGS "-DENABLE_UMFPACK:BOOL=ON")
+endif ()
+
+if ("${CONFIG}" STREQUAL "Debug")
+  set(PACKAGE_NAME "${PACKAGE_NAME}-dbg")
+  set(PACKAGE_SECTION "debug")
+else ()
+  set(PACKAGE_SECTION "misc")
+endif ()
+# set(PACKAGE_NAME "${PACKAGE_NAME}-dev")
+
+set(IN_DIR  ${CMAKE_SOURCE_DIR}/tools/packaging/debian)
+set(OUT_DIR ${CMAKE_SOURCE_DIR}/debian_package)
+file(MAKE_DIRECTORY ${OUT_DIR})
+
+
+configure_file(${IN_DIR}/CPackOptions.cmake.in ${OUT_DIR}/CPackOptions.cmake @ONLY)
+include(${OUT_DIR}/CPackOptions.cmake)
+
+set(PACKAGE_FILENAME ${CPACK_PACKAGE_NAME}_${CPACK_PACKAGE_VERSION})
+set(PACKAGE_PREFIX ${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION})
+set(TGZ_FILENAME ${OUT_DIR}/${PACKAGE_FILENAME}.orig.tar.gz)
+
+execute_process(COMMAND git archive --format=tar.gz --prefix ${PACKAGE_PREFIX}/ -o ${TGZ_FILENAME} master)
+execute_process(COMMAND date +%F OUTPUT_VARIABLE CURRENT_DATE)
+execute_process(COMMAND date +%Y OUTPUT_VARIABLE YEAR)
+
+set(PACKAGE_VERSION       ${CPACK_PACKAGE_VERSION})
+SET(PACKAGE_VERSION_MAJOR ${CPACK_PACKAGE_VERSION_MAJOR})
+SET(PACKAGE_VERSION_MINOR ${CPACK_PACKAGE_VERSION_MINOR})
+SET(PACKAGE_VERSION_PATCH ${CPACK_PACKAGE_VERSION_PATCH})
+set(PACKAGE_SOURCE        "<https://gitlab.math.tu-dresden.de/iwr/amdis.git>")
+set(PACKAGE_CONTACT       ${CPACK_PACKAGE_CONTACT})
+execute_process(COMMAND date OUTPUT_VARIABLE PACKAGE_DATE)
+
+file(READ ${CMAKE_SOURCE_DIR}/AUTHORS PACKAGE_AUTHORS)
+set(PACKAGE_DESCRIPTION_SUMMARY ${CPACK_PACKAGE_DESCRIPTION_SUMMARY})
+set(PACKAGE_DESCRIPTION         ${CPACK_PACKAGE_DESCRIPTION})
+
+set(PACKAGE_LICENSE_FILE     ${CMAKE_SOURCE_DIR}/LICENSE)
+set(PACKAGE_README_FILE      ${CMAKE_SOURCE_DIR}/README.md)
+set(PACKAGE_DESCRIPTION_FILE ${PACKAGE_README_FILE})
+
+# extract package generated by CPack
+execute_process(COMMAND tar -xzf ${TGZ_FILENAME} -C ${OUT_DIR})
+
+set(DEBIAN_DIR ${OUT_DIR}/${PACKAGE_PREFIX}/debian)
+
+# generate necessary files for debian packages
+if (NOT EXISTS ${CMAKE_SOURCE_DIR}/CHANGELOG)
+  configure_file(${IN_DIR}/debian.changelog.in ${CMAKE_SOURCE_DIR}/CHANGELOG @ONLY)
+elseif (UPDATE_CHANGELOG)
+  execute_process(COMMAND dch -i -M "New release version published at ${CURRENT_DATE}" -c ${CMAKE_SOURCE_DIR}/CHANGELOG)
+endif ()
+message(STATUS "Changelog must be uploaded to master")
+
+file(MAKE_DIRECTORY ${DEBIAN_DIR})
+file(MAKE_DIRECTORY ${DEBIAN_DIR}/soure)
+
+configure_file(${CMAKE_SOURCE_DIR}/CHANGELOG ${DEBIAN_DIR}/changelog COPYONLY)
+configure_file(${IN_DIR}/debian.copyright.in ${DEBIAN_DIR}/copyright @ONLY)
+configure_file(${IN_DIR}/debian.control.in   ${DEBIAN_DIR}/control   @ONLY)
+configure_file(${IN_DIR}/debian.rules.in     ${DEBIAN_DIR}/rules     @ONLY)
+execute_process(COMMAND chmod +x ${DEBIAN_DIR}/rules)
+file(WRITE ${DEBIAN_DIR}/compat "9\n")
+file(WRITE ${DEBIAN_DIR}/soure/format "3.0 (quilt)\n")
+
+
+# generate the debian package
+execute_process(COMMAND debuild -us -uc
+                WORKING_DIRECTORY ${OUT_DIR}/${PACKAGE_PREFIX})

tools/packaging/debian/debian.changelog.in

+@PACKAGE_NAME@ (@PACKAGE_VERSION@-1) UNRELEASED; urgency=medium
+
+  * Initial release.
+
+ -- @PACKAGE_CONTACT@  @PACKAGE_DATE@

tools/packaging/debian/debian.control.in

+Source: @PACKAGE_NAME@
+Maintainer: @PACKAGE_CONTACT@
+Section: @PACKAGE_SECTION@
+Priority: optional
+Standards-Version: 3.9.2
+Build-Depends: debhelper (>= 9), libboost-date-time-dev (>= 1.48),
+ libboost-filesystem-dev (>= 1.48), libboost-iostreams-dev (>= 1.48),
+ libboost-program-options-dev (>= 1.48), libboost-system-dev (>= 1.48),
+ zlib1g-dev (>= 1.2), libsuitesparse-dev (>= 4.2.1), cmake (>= 2.8.10)
+
+Package: @PACKAGE_NAME@
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, libboost-date-time-dev (>= 1.48),
+ libboost-filesystem-dev (>= 1.48), libboost-iostreams-dev (>= 1.48),
+ libboost-program-options-dev (>= 1.48), libboost-system-dev (>= 1.48),
+ zlib1g-dev (>= 1.2), libsuitesparse-dev (>= 4.2.1), cmake (>= 2.8.10)
+Description: @PACKAGE_DESCRIPTION_SUMMARY@
+ @PACKAGE_DESCRIPTION@

tools/packaging/debian/debian.copyright.in

+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: @PACKAGE_NAME@
+Source: @PACKAGE_SOURCE@
+
+Files: *
+Copyright: @PACKAGE_AUTHORS@
+License: MIT
+
+Files: debian/*
+Copyright: @YEAR@ @PACKAGE_CONTACT@
+License: MIT
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy of
+ this software and associated documentation files (the "Software"), to deal in
+ the Software without restriction, including without limitation the rights to
+ use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
+ the Software, and to permit persons to whom the Software is furnished to do so,
+ subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in all
+ copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
+ FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
+ COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
+ IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
\ No newline at end of file

tools/packaging/debian/debian.rules.in

+#!/usr/bin/make -f
+
+%:
+	dh $@
+
+override_dh_auto_configure:
+	cmake -DCMAKE_BUILD_TYPE=@CONFIG@ \
+		-DCMAKE_INSTALL_PREFIX:PATH=/usr \
+		-DENABLE_EXTENSIONS:BOOL=ON \
+		-DENABLE_COMPRESSION:BOOL=ON @ADDITIONAL_FLAGS@ \
+		AMDiS