diff --git a/docs/reference/DOFVector.md b/docs/reference/DOFVector.md
index 027bdda2c9ac10279d34d6b598305671e14d7e7c..d213e118fbb94cede7ecda2f9951ac16a09fcd44 100644
--- a/docs/reference/DOFVector.md
+++ b/docs/reference/DOFVector.md
@@ -23,7 +23,7 @@ The pair $`\{(u_i),\{\phi_i\}\}`$ is called `DOFVector` and the function $`u=u(\
 
 
 ## class `DOFVector`
-Defined in header [`<amdis/DOFVector.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/DOFVector.hpp)
+Defined in header [`<amdis/DOFVector.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/DOFVector.hpp)
 
 ```c++
 template <class GB,
@@ -214,7 +214,7 @@ performed on the temporary using *noalias* interpolation (1). Then, this tempoar
 
 
 ## function `makeDOFVector`
-Defined in header [`<amdis/DOFVector.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/DOFVector.hpp)
+Defined in header [`<amdis/DOFVector.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/DOFVector.hpp)
 
 ```c++
 template <class T = double,
@@ -261,7 +261,7 @@ auto vec2 = makeDOFVector(basis2, DataTransferOperation::NO_OPERATION);
 
 
 ## class `DiscreteFunction`
-Defined in header [`<amdis/gridfunctions/DiscreteFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/gridfunctions/DiscreteFunction.hpp)
+Defined in header [`<amdis/gridfunctions/DiscreteFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/gridfunctions/DiscreteFunction.hpp)
 
 ```c++
 template <class Coefficients,
@@ -467,7 +467,7 @@ df2 += 42.0;
 
 
 ## function `makeDiscreteFunction`
-Defined in header [`<amdis/gridfunctions/DiscreteFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/gridfunctions/DiscreteFunction.hpp)
+Defined in header [`<amdis/gridfunctions/DiscreteFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/gridfunctions/DiscreteFunction.hpp)
 
 ```c++
 // (1)
diff --git a/docs/reference/GridFunctions.md b/docs/reference/GridFunctions.md
index fc33b438b9e53ec2362a8847d8e23943d43a216e..4dc85fcc24aca4b851075a4311c28f086627471c 100644
--- a/docs/reference/GridFunctions.md
+++ b/docs/reference/GridFunctions.md
@@ -152,7 +152,7 @@ auto value = integrate(Expression, prob.gridView());
 
 
 ## function `evalAtQP()`
-Defined in header [`<amdis/gridfunctions/AnalyticGridFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/gridfunctions/AnalyticGridFunction.hpp)
+Defined in header [`<amdis/gridfunctions/AnalyticGridFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/gridfunctions/AnalyticGridFunction.hpp)
 
 ```c++
 template <class Function>
@@ -172,7 +172,7 @@ Creates a `GridFunction` that evaluates a functor in global coordinates.
 
 
 ## function `X()`
-Defined in header [`<amdis/gridfunctions/CoordsGridFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/gridfunctions/CoordsGridFunction.hpp)
+Defined in header [`<amdis/gridfunctions/CoordsGridFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/gridfunctions/CoordsGridFunction.hpp)
 
 ```c++
 inline auto X();          // (1)
@@ -190,7 +190,7 @@ global coordinates (2).
 
 
 ## function `gradientAtQP()`
-Defined in header [`<amdis/gridfunctions/DerivativeGridFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/gridfunctions/DerivativeGridFunction.hpp)
+Defined in header [`<amdis/gridfunctions/DerivativeGridFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/gridfunctions/DerivativeGridFunction.hpp)
 
 ```c++
 template <class Expr>
@@ -218,7 +218,7 @@ gradientAtQP(X(0) + X(1) + prob.solution(_0))
 
 
 ## function `invokeAtQP()`
-Defined in header [`<amdis/gridfunctions/FunctorGridFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/gridfunctions/FunctorGridFunction.hpp)
+Defined in header [`<amdis/gridfunctions/FunctorGridFunction.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/gridfunctions/FunctorGridFunction.hpp)
 
 ```c++
 template <class Functor, class... Exprs>
diff --git a/docs/reference/MatVecBase.md b/docs/reference/MatVecBase.md
index 43d1b5c5e3bf3e20d1ee66440f69091ef1996ebd..64e29fbab2a62b540b5c3906f70db9f73393f378 100644
--- a/docs/reference/MatVecBase.md
+++ b/docs/reference/MatVecBase.md
@@ -13,7 +13,7 @@ class for all matrices associated to the indices of a row and column global basi
 
 
 ## class `MatrixBase`
-Defined in header [`<amdis/linearalgebra/MatrixBase.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/linearalgebra/MatrixBase.hpp)
+Defined in header [`<amdis/linearalgebra/MatrixBase.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/linearalgebra/MatrixBase.hpp)
 
 ```c++
 template <class RowBasis,
@@ -38,7 +38,7 @@ The template parameter `Backend` refers to the actual implementation of the matr
 
 
 ## class `VectorBase`
-Defined in header [`<amdis/linearalgebra/VectorBase.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/linearalgebra/VectorBase.hpp)
+Defined in header [`<amdis/linearalgebra/VectorBase.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/linearalgebra/VectorBase.hpp)
 
 ```c++
 template <class Basis,
@@ -100,7 +100,7 @@ template <class GB>
 VectorBase(GB&& basis)                            // (2)
 ```
 
-(1) Constructor that stores the `shared_ptr` of the global basis. (2) Constructor that forwards to (1) by wrapping reference 
+(1) Constructor that stores the `shared_ptr` of the global basis. (2) Constructor that forwards to (1) by wrapping reference
 into (non-destroying) `shared_ptr`.
 
 #### Arguments
@@ -311,4 +311,4 @@ to switch insertion mode before calling [finish()](#function-vectorbasefinish).
 - **expects:** `mask` must be forward iterable for at least `nodeVec.size()` elements
 
 ### Postconditions
-- **ensures:** Vector is in insertion mode defined by the `assign` functor.
\ No newline at end of file
+- **ensures:** Vector is in insertion mode defined by the `assign` functor.
diff --git a/docs/reference/Operators.md b/docs/reference/Operators.md
index 3c977d6f5b37fffdec62158e8ac52abdc8c5b98d..37f56392e7da96aac4a7932d3e159fe0d309a459 100644
--- a/docs/reference/Operators.md
+++ b/docs/reference/Operators.md
@@ -11,7 +11,7 @@
 
 
 ## function `makeOperator()`
-Defined in header [`<amdis/GridFunctionOperator.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/GridFunctionOperator.hpp)
+Defined in header [`<amdis/GridFunctionOperator.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/GridFunctionOperator.hpp)
 
 ```c++
 template <class Tag, class Expr, class... QuadratureArgs>
@@ -146,7 +146,7 @@ auto op3 = makeOperator(B, sin(X(0)), Dune::QuadratureRules(Dune::GeometryType::
 
 
 ## function `zot()`
-Defined in header [`<amdis/localoperators/ZeroOrderTestTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/localoperators/ZeroOrderTestTrial.hpp)
+Defined in header [`<amdis/localoperators/ZeroOrderTestTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/localoperators/ZeroOrderTestTrial.hpp)
 
 ```c++
 template <class Expr, class... QuadratureArgs>
@@ -161,10 +161,10 @@ the same as for `makeOperator()`.
 ## function `fot()`
 Defined in headers
 
-- [`<amdis/localoperators/FirstOrderGradTestTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/localoperators/FirstOrderGradTestTrial.hpp)
-- [`<amdis/localoperators/FirstOrderTestGradTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/localoperators/FirstOrderTestGradTrial.hpp)
-- [`<amdis/localoperators/FirstOrderPartialTestTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/localoperators/FirstOrderPartialTestTrial.hpp)
-- [`<amdis/localoperators/FirstOrderTestPartialTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/localoperators/FirstOrderTestPartialTrial.hpp)
+- [`<amdis/localoperators/FirstOrderGradTestTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/localoperators/FirstOrderGradTestTrial.hpp)
+- [`<amdis/localoperators/FirstOrderTestGradTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/localoperators/FirstOrderTestGradTrial.hpp)
+- [`<amdis/localoperators/FirstOrderPartialTestTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/localoperators/FirstOrderPartialTestTrial.hpp)
+- [`<amdis/localoperators/FirstOrderTestPartialTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/localoperators/FirstOrderTestPartialTrial.hpp)
 
 ```c++
 template <class Expr, class... QuadratureArgs>
@@ -190,7 +190,7 @@ and whether it is a full gradient or just the partial derivative.
 
 
 ## function `sot()`
-Defined in header [`<amdis/localoperators/SecondOrderGradTestGradTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/localoperators/SecondOrderGradTestGradTrial.hpp)
+Defined in header [`<amdis/localoperators/SecondOrderGradTestGradTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/localoperators/SecondOrderGradTestGradTrial.hpp)
 
 ```c++
 template <class Expr, class... QuadratureArgs>
@@ -203,7 +203,7 @@ as for `makeOperator()`.
 
 
 ## function `sot_ij()`
-Defined in header [`<amdis/localoperators/SecondOrderPartialTestPartialTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/localoperators/SecondOrderPartialTestPartialTrial.hpp)
+Defined in header [`<amdis/localoperators/SecondOrderPartialTestPartialTrial.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/localoperators/SecondOrderPartialTestPartialTrial.hpp)
 
 ```c++
 template <class Expr, class... QuadratureArgs>
@@ -217,7 +217,7 @@ Creates a second-order term of partial derivatives. This is a shortcut for
 
 
 ## function `convectionDiffusion()`
-Defined in header [`<amdis/localoperators/ConvectionDiffusionOperator.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/localoperators/ConvectionDiffusionOperator.hpp)
+Defined in header [`<amdis/localoperators/ConvectionDiffusionOperator.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/localoperators/ConvectionDiffusionOperator.hpp)
 
 ```c++
 template <class A, class B, class C, class F, bool conserving = true>
diff --git a/docs/reference/Problem.md b/docs/reference/Problem.md
index d7840432683f386cd65fa5fdf346cf68294c4252..ab11f6ff2dc8e4452c5fd3ccf4726459629afc11 100644
--- a/docs/reference/Problem.md
+++ b/docs/reference/Problem.md
@@ -36,7 +36,7 @@ These two classes build the basis for most AMDiS projects.
 
 
 ## class `ProblemStat`
-Defined in header [`<amdis/ProblemStat.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/ProblemStat.hpp)
+Defined in header [`<amdis/ProblemStat.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/ProblemStat.hpp)
 
 ```c++
 template <class Traits>
@@ -368,7 +368,7 @@ prob.addDirichletBC(BoundaryType{1}, 0, 0, 0.0);
 ```
 
 ## class `ProblemInstat`
-Defined in header [`<amdis/ProblemInstat.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/ProblemInstat.hpp)
+Defined in header [`<amdis/ProblemInstat.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/ProblemInstat.hpp)
 
 ```c++
 template <class Traits>
@@ -393,7 +393,7 @@ Standard implementation of [ProblemTimeInterface](#class-problemtimeinterface) f
 
 
 ## class `StandardProblemIteration`
-Defined in header [`<amdis/StandardProblemIteration.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/StandardProblemIteration.hpp)
+Defined in header [`<amdis/StandardProblemIteration.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/StandardProblemIteration.hpp)
 
 ```c++
 class StandardProblemIteration
@@ -416,7 +416,7 @@ A master problem for a single non-coupled problem.
 
 
 ## class `ProblemStatBase`
-Defined in header [`<amdis/ProblemStatBase.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/ProblemStatBase.hpp)
+Defined in header [`<amdis/ProblemStatBase.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/ProblemStatBase.hpp)
 
 ```c++
 class ProblemStatBase
@@ -440,7 +440,7 @@ Base class for [ProblemStat](#class-problemstat).
 
 
 ## class `ProblemInstatBase`
-Defined in header [`<amdis/ProblemInstatBase.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/ProblemInstatBase.hpp)
+Defined in header [`<amdis/ProblemInstatBase.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/ProblemInstatBase.hpp)
 
 ```c++
 class ProblemInstatBase
@@ -463,7 +463,7 @@ Base class for [ProblemInstat](#class-probleminstat).
 
 
 ## class `ProblemIterationInterface`
-Defined in header [`<amdis/ProblemIterationInterface.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/ProblemIterationInterface.hpp)
+Defined in header [`<amdis/ProblemIterationInterface.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/ProblemIterationInterface.hpp)
 
 ```c++
 class ProblemIterationInterface
@@ -487,7 +487,7 @@ estimate, and adapt steps of the single problems in `oneIteration()`.
 
 
 ## class `ProblemTimeInterface`
-Defined in header [`<amdis/ProblemTimeInterface.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/src/amdis/ProblemTimeInterface.hpp)
+Defined in header [`<amdis/ProblemTimeInterface.hpp>`](https://gitlab.mn.tu-dresden.de/amdis/amdis-core/blob/master/amdis/ProblemTimeInterface.hpp)
 
 ```c++
 class ProblemTimeInterface