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Fix directories in Doxyfile

Müller, Felix requested to merge issue/doc_build_params into master

After working with RTD with the recent doc-related MRs I discovered the API documentation was not building properly. This MR fixes the issue.

Changes:

  • Replace old src/amdis/... paths with amdis/... in Doxyfile
  • Build doc for all backends, not just MTL
  • Split howto.md into two files and include them in doc
  • Hide Dune namespace from doc (contains almost only forward decl)

See https://amdis.readthedocs.io/en/issue-doc_build_params/

Edited by Müller, Felix

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