Makefile.am

lib_LTLIBRARIES = libamdis.la libcompositeFEM.la

SOURCE_DIR = ../src
LIB_DIR = ../lib
PARALLEL_DIR = $(SOURCE_DIR)

PARMETIS_DIR = ../lib/ParMetis-3.1

AMDIS_INCLUDES = -I$(SOURCE_DIR) 

libamdis_la_CXXFLAGS = 

if USE_PARALLEL_AMDIS
  PARALLEL_AMDIS_SOURCES = \
  $(PARALLEL_DIR)/ConditionalEstimator.h $(PARALLEL_DIR)/ConditionalEstimator.cc \
  $(PARALLEL_DIR)/ConditionalMarker.h \
  $(PARALLEL_DIR)/MeshStructure.h $(PARALLEL_DIR)/MeshStructure.cc \
  $(PARALLEL_DIR)/MeshStructure_ED.h \
  $(PARALLEL_DIR)/ParallelError.h $(PARALLEL_DIR)/ParallelError.hh \
  $(PARALLEL_DIR)/ParallelProblem.h $(PARALLEL_DIR)/ParallelProblem.cc \
  $(PARALLEL_DIR)/ParMetisPartitioner.h $(PARALLEL_DIR)/ParMetisPartitioner.cc \
  $(PARALLEL_DIR)/PartitionElementData.h
  PARALLEL_INCLUDES = -I$(MPI_DIR)/include -I$(PARMETIS_DIR)
  libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_AMDIS=1
else
  PARALLEL_AMDIS_SOURCES = 
  PARALLEL_INCLUDES =
endif

if USE_PARALLEL_DOMAIN_AMDIS
  PARALLEL_AMDIS_SOURCES += \
  $(PARALLEL_DIR)/ParallelDomainProblem.h $(PARALLEL_DIR)/ParallelDomainProblem.cc
  libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_DOMAIN_AMDIS=1
  AMDIS_INCLUDES += -I/u/witkowski/local/petsc-3.0.0-p4/include -I/u/witkowski/local/petsc-3.0.0-p4/linux-gnu-c-debug/include
endif

if ENABLE_UMFPACK
  libamdis_la_CXXFLAGS += -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK
  AMDIS_INCLUDES += -I$(LIB_DIR)/UFconfig \
	            -I$(LIB_DIR)/AMD/Include \
                    -I$(LIB_DIR)/UMFPACK/Include  
endif

if ENABLE_MKL
  libamdis_la_CXXFLAGS += -DHAVE_MKL=1 -I${MKL_INC}
endif

if ENABLE_DUNE
  libamdis_la_CXXFLAGS += -DHAVE_DUNE=1
  AMDIS_INCLUDES += -I$(DUNE_DIR)
endif

if ENABLE_BOOST
  libamdis_la_CXXFLAGS += -DHAVE_BOOST=1
endif

TEMPLATE_INCLUDES = -I../lib/mtl4 -I../lib/boost_1_34_1

INCLUDES = $(AMDIS_INCLUDES) $(PARALLEL_INCLUDES) $(TEMPLATE_INCLUDES)

if AMDIS_DEBUG
  libamdis_la_CXXFLAGS += -g -O0 -Wall -DDEBUG=1 $(OPENMP_FLAG) $(INCLUDES) #-pedantic
else
  libamdis_la_CXXFLAGS += -O2 -Wall -DDEBUG=0 -DNDEBUG $(OPENMP_FLAG) -ftemplate-depth-100 $(INCLUDES) #-pedantic
endif


libamdis_la_SOURCES =  \
$(PARALLEL_AMDIS_SOURCES) \
$(SOURCE_DIR)/DOFIndexed.h $(SOURCE_DIR)/DOFIndexed.cc \
$(SOURCE_DIR)/GNUPlotWriter.h $(SOURCE_DIR)/GNUPlotWriter.cc \
$(SOURCE_DIR)/VertexVector.h $(SOURCE_DIR)/VertexVector.cc \
$(SOURCE_DIR)/PeriodicBC.h $(SOURCE_DIR)/PeriodicBC.cc \
$(SOURCE_DIR)/Recovery.h $(SOURCE_DIR)/Recovery.cc \
$(SOURCE_DIR)/RecoveryEstimator.h $(SOURCE_DIR)/RecoveryEstimator.cc \
$(SOURCE_DIR)/ResidualEstimator.h $(SOURCE_DIR)/ResidualEstimator.cc \
$(SOURCE_DIR)/Cholesky.h $(SOURCE_DIR)/Cholesky.cc \
$(SOURCE_DIR)/AdaptBase.h $(SOURCE_DIR)/AdaptBase.cc \
$(SOURCE_DIR)/ProblemIterationInterface.h \
$(SOURCE_DIR)/StandardProblemIteration.h $(SOURCE_DIR)/StandardProblemIteration.cc \
$(SOURCE_DIR)/ProblemScal.h $(SOURCE_DIR)/ProblemScal.cc \
$(SOURCE_DIR)/ProblemVec.h $(SOURCE_DIR)/ProblemVec.cc \
$(SOURCE_DIR)/DualTraverse.h $(SOURCE_DIR)/DualTraverse.cc \
$(SOURCE_DIR)/ElementPartition_ED.h $(SOURCE_DIR)/SurfacePartition_ED.h \
$(SOURCE_DIR)/ElementData.h $(SOURCE_DIR)/ElementData.cc \
$(SOURCE_DIR)/ComponentTraverseInfo.h $(SOURCE_DIR)/ComponentTraverseInfo.cc \
$(SOURCE_DIR)/CreatorMap.h $(SOURCE_DIR)/CreatorMap.hh $(SOURCE_DIR)/CreatorMap.cc \
$(SOURCE_DIR)/CreatorInterface.h \
$(SOURCE_DIR)/ElementFunction.h \
$(SOURCE_DIR)/ProblemInterpolScal.h $(SOURCE_DIR)/ProblemInterpolScal.cc \
$(SOURCE_DIR)/ProblemInterpolVec.h $(SOURCE_DIR)/ProblemInterpolVec.cc \
$(SOURCE_DIR)/Serializable.h \
$(SOURCE_DIR)/BallProject.h \
$(SOURCE_DIR)/CylinderProject.h \
$(SOURCE_DIR)/MacroReader.h $(SOURCE_DIR)/MacroReader.cc \
$(SOURCE_DIR)/ValueReader.h $(SOURCE_DIR)/ValueReader.cc \
$(SOURCE_DIR)/Projection.h $(SOURCE_DIR)/Projection.cc \
$(SOURCE_DIR)/SubAssembler.h $(SOURCE_DIR)/SubAssembler.cc \
$(SOURCE_DIR)/ZeroOrderAssembler.h $(SOURCE_DIR)/ZeroOrderAssembler.cc \
$(SOURCE_DIR)/FirstOrderAssembler.h $(SOURCE_DIR)/FirstOrderAssembler.cc \
$(SOURCE_DIR)/SecondOrderAssembler.h $(SOURCE_DIR)/SecondOrderAssembler.cc \
$(SOURCE_DIR)/Assembler.h $(SOURCE_DIR)/Assembler.cc \
$(SOURCE_DIR)/AdaptInfo.h $(SOURCE_DIR)/AdaptInfo.cc \
$(SOURCE_DIR)/Marker.h $(SOURCE_DIR)/Marker.cc \
$(SOURCE_DIR)/SystemVector.h \
$(SOURCE_DIR)/SurfaceQuadrature.h $(SOURCE_DIR)/SurfaceQuadrature.cc \
$(SOURCE_DIR)/LeafData.h $(SOURCE_DIR)/LeafData.cc \
$(SOURCE_DIR)/BoundaryManager.h $(SOURCE_DIR)/BoundaryManager.cc \
$(SOURCE_DIR)/BoundaryCondition.h \
$(SOURCE_DIR)/DirichletBC.h $(SOURCE_DIR)/DirichletBC.cc \
$(SOURCE_DIR)/RobinBC.h $(SOURCE_DIR)/RobinBC.cc \
$(SOURCE_DIR)/AbstractFunction.h \
$(SOURCE_DIR)/ProblemStatBase.h \
$(SOURCE_DIR)/DOFContainer.h \
$(SOURCE_DIR)/FileWriter.h $(SOURCE_DIR)/FileWriter.hh $(SOURCE_DIR)/FileWriter.cc \
$(SOURCE_DIR)/ElementFileWriter.h $(SOURCE_DIR)/ElementFileWriter.cc \
$(SOURCE_DIR)/ElInfo.cc \
$(SOURCE_DIR)/ElInfoStack.h $(SOURCE_DIR)/ElInfoStack.cc \
$(SOURCE_DIR)/Operator.h $(SOURCE_DIR)/Operator.cc \
$(SOURCE_DIR)/Mesh.cc \
$(SOURCE_DIR)/AMDiS.h \
$(SOURCE_DIR)/AdaptStationary.h $(SOURCE_DIR)/AdaptStationary.cc \
$(SOURCE_DIR)/AdaptInstationary.h $(SOURCE_DIR)/AdaptInstationary.cc \
$(SOURCE_DIR)/QPsiPhi.h \
$(SOURCE_DIR)/BasisFunction.h \
$(SOURCE_DIR)/Boundary.h \
$(SOURCE_DIR)/ITL_Solver.h \
$(SOURCE_DIR)/CoarseningManager.h \
$(SOURCE_DIR)/CoarseningManager1d.h $(SOURCE_DIR)/CoarseningManager2d.h $(SOURCE_DIR)/CoarseningManager3d.h \
$(SOURCE_DIR)/DOFAdmin.h $(SOURCE_DIR)/DOFIterator.h $(SOURCE_DIR)/DOFMatrix.h $(SOURCE_DIR)/DOFVector.h $(SOURCE_DIR)/DOFVector.hh $(SOURCE_DIR)/DOFVector.cc $(SOURCE_DIR)/Element.h $(SOURCE_DIR)/ElementConnection.h \
$(SOURCE_DIR)/ElInfo.h $(SOURCE_DIR)/ElInfo1d.h $(SOURCE_DIR)/ElInfo2d.h $(SOURCE_DIR)/ElInfo3d.h $(SOURCE_DIR)/Error.h \
$(SOURCE_DIR)/Error.hh $(SOURCE_DIR)/Estimator.h $(SOURCE_DIR)/Estimator.cc $(SOURCE_DIR)/FiniteElemSpace.h $(SOURCE_DIR)/FixVec.h $(SOURCE_DIR)/FixVec.hh $(SOURCE_DIR)/FixVecConvert.h $(SOURCE_DIR)/Flag.h $(SOURCE_DIR)/Global.h \
$(SOURCE_DIR)/UmfPackSolver.h \ $(SOURCE_DIR)/UmfPackSolver.hh \
$(SOURCE_DIR)/Lagrange.h $(SOURCE_DIR)/Line.h \
$(SOURCE_DIR)/MacroElement.h $(SOURCE_DIR)/MacroWriter.h \
$(SOURCE_DIR)/Markings.h $(SOURCE_DIR)/Markings.hh \
$(SOURCE_DIR)/Mesh.h \
$(SOURCE_DIR)/Parameters.h \
$(SOURCE_DIR)/Parametric.h \
$(SOURCE_DIR)/Quadrature.h \
$(SOURCE_DIR)/RCNeighbourList.h \
$(SOURCE_DIRe)/RefinementManager.h \
$(SOURCE_DIR)/RefinementManager1d.h \
$(SOURCE_DIR)/RefinementManager2d.h \
$(SOURCE_DIR)/RefinementManager3d.h \
$(SOURCE_DIR)/TecPlotWriter.h $(SOURCE_DIR)/TecPlotWriter.hh \
$(SOURCE_DIR)/Tetrahedron.h \
$(SOURCE_DIR)/Traverse.h \
$(SOURCE_DIR)/Triangle.h \
$(SOURCE_DIR)/NonLinSolver.h $(SOURCE_DIR)/NonLinSolver.hh \
$(SOURCE_DIR)/ProblemInstat.h $(SOURCE_DIR)/ProblemInstat.cc \
$(SOURCE_DIR)/ProblemTimeInterface.h \
$(SOURCE_DIR)/ProblemNonLin.h $(SOURCE_DIR)/ProblemNonLin.cc \
$(SOURCE_DIR)/NonLinUpdater.h $(SOURCE_DIR)/NonLinUpdater.cc \
$(SOURCE_DIR)/Newton.h $(SOURCE_DIR)/Newton.hh  \
$(SOURCE_DIR)/NewtonFS.h $(SOURCE_DIR)/NewtonFS.hh \
$(SOURCE_DIR)/GridWriter.h $(SOURCE_DIR)/GridWriter.hh \
$(SOURCE_DIR)/ValueWriter.h \
$(SOURCE_DIR)/QPsiPhi.cc \
$(SOURCE_DIR)/BasisFunction.cc \
$(SOURCE_DIR)/Boundary.cc \
$(SOURCE_DIR)/CoarseningManager.cc \
$(SOURCE_DIR)/CoarseningManager1d.cc \
$(SOURCE_DIR)/CoarseningManager2d.cc \
$(SOURCE_DIR)/CoarseningManager3d.cc \
$(SOURCE_DIR)/DOFAdmin.cc \
$(SOURCE_DIR)/DOFMatrix.cc \
$(SOURCE_DIR)/Element.cc \
$(SOURCE_DIR)/ElInfo1d.cc \
$(SOURCE_DIR)/ElInfo2d.cc \
$(SOURCE_DIR)/ElInfo3d.cc \
$(SOURCE_DIR)/FiniteElemSpace.cc \
$(SOURCE_DIR)/FixVec.cc \
$(SOURCE_DIR)/Global.cc \
$(SOURCE_DIR)/Lagrange.cc \
$(SOURCE_DIR)/Line.cc \
$(SOURCE_DIR)/MacroElement.cc \
$(SOURCE_DIR)/MacroWriter.cc \
$(SOURCE_DIR)/Parameters.cc \
$(SOURCE_DIR)/Parametric.cc \
$(SOURCE_DIR)/Quadrature.cc \
$(SOURCE_DIR)/RCNeighbourList.cc \
$(SOURCE_DIR)/RefinementManager.cc \
$(SOURCE_DIR)/RefinementManager1d.cc \
$(SOURCE_DIR)/RefinementManager2d.cc \
$(SOURCE_DIR)/RefinementManager3d.cc \
$(SOURCE_DIR)/Tetrahedron.cc \
$(SOURCE_DIR)/Traverse.cc \
$(SOURCE_DIR)/TraverseParallel.h $(SOURCE_DIR)/TraverseParallel.cc \
$(SOURCE_DIR)/Triangle.cc \
$(SOURCE_DIR)/TecPlotWriter.cc \
$(SOURCE_DIR)/ValueWriter.cc \
$(SOURCE_DIR)/VtkWriter.h $(SOURCE_DIR)/VtkWriter.cc \
$(SOURCE_DIR)/PngWriter.h $(SOURCE_DIR)/PngWriter.cc \
$(SOURCE_DIR)/DataCollector.h $(SOURCE_DIR)/DataCollector.cc \
$(SOURCE_DIR)/ElementInfo.h \
$(SOURCE_DIR)/VertexInfo.h \
$(SOURCE_DIR)/PeriodicInfo.h \
$(SOURCE_DIR)/OpenMP.h \
$(SOURCE_DIR)/ScalableQuadrature.h $(SOURCE_DIR)/ScalableQuadrature.cc \
$(SOURCE_DIR)/SubElInfo.h $(SOURCE_DIR)/SubElInfo.cc \
$(SOURCE_DIR)/SolutionDataStorage.h $(SOURCE_DIR)/SolutionDataStorage.hh \
$(SOURCE_DIR)/InteriorBoundary.h $(SOURCE_DIR)/InteriorBoundary.cc \
$(SOURCE_DIR)/ElementDofIteartor.h $(SOURCE_DIR)/ElementDofIterator.cc \
$(SOURCE_DIR)/parareal/ProblemBase.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.h $(SOURCE_DIR)/parareal/AdaptParaReal.cc


COMPOSITE_SOURCE_DIR = ../compositeFEM/src

libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)


libcompositeFEM_la_SOURCES = $(COMPOSITE_SOURCE_DIR)/CFE_Integration.h \
$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc \
$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.h \
$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.cc \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.h \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.cc \
$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.h \
$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.cc \
$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.h \
$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.cc \
$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.h \
$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.cc \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.h \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.cc \
$(COMPOSITE_SOURCE_DIR)/SubPolytope.h $(COMPOSITE_SOURCE_DIR)/SubPolytope.cc \
$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.h \
$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.cc \
$(COMPOSITE_SOURCE_DIR)/TranslateLsFct.h