Makefile.am 10.1 KB
Newer Older
1 2 3 4 5 6 7 8 9 10
lib_LTLIBRARIES = libamdis.la libcompositeFEM.la

SOURCE_DIR = ../src
LIB_DIR = ../lib
PARALLEL_DIR = $(SOURCE_DIR)

PARMETIS_DIR = ../lib/ParMetis-3.1

AMDIS_INCLUDES = -I$(SOURCE_DIR) 

11 12
libamdis_la_CXXFLAGS = 

13 14 15
if USE_PARALLEL_AMDIS
  PARALLEL_AMDIS_SOURCES = \
  $(PARALLEL_DIR)/ConditionalEstimator.h $(PARALLEL_DIR)/ConditionalEstimator.cc \
16
  $(PARALLEL_DIR)/ConditionalMarker.h \ $(PARALLEL_DIR)/ConditionalMarker.cc \
17 18 19
  $(PARALLEL_DIR)/ParallelError.h $(PARALLEL_DIR)/ParallelError.hh \
  $(PARALLEL_DIR)/ParallelProblem.h $(PARALLEL_DIR)/ParallelProblem.cc \
  $(PARALLEL_DIR)/ParMetisPartitioner.h $(PARALLEL_DIR)/ParMetisPartitioner.cc \
Naumann, Andreas's avatar
Naumann, Andreas committed
20
  $(PARALLEL_DIR)/PartitionElementData.h \
21
  $(PARALLEL_DIR)/PollutionError.h $(PARALLEL_DIR)/PollutionError.cc
22 23
  PARALLEL_INCLUDES = -I$(MPI_DIR)/include -I$(PARMETIS_DIR)
  libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_AMDIS=1
24 25 26 27 28
else
  PARALLEL_AMDIS_SOURCES = 
  PARALLEL_INCLUDES =
endif

29 30
if USE_PARALLEL_DOMAIN_AMDIS
  PARALLEL_AMDIS_SOURCES += \
31
  $(PARALLEL_DIR)/ParallelDomainBase.h $(PARALLEL_DIR)/ParallelDomainBase.cc \
32
  $(PARALLEL_DIR)/ParallelDomainVec.h $(PARALLEL_DIR)/ParallelDomainVec.cc
33
  libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_DOMAIN_AMDIS=1
34
  AMDIS_INCLUDES += -I$(PETSC_DIR)/include -I$(PETSC_DIR)/$(PETSC_ARCH)/include
35 36
endif

37
if ENABLE_UMFPACK
38
  libamdis_la_CXXFLAGS += -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK
39 40 41 42 43
  AMDIS_INCLUDES += -I$(LIB_DIR)/UFconfig \
	            -I$(LIB_DIR)/AMD/Include \
                    -I$(LIB_DIR)/UMFPACK/Include  
endif

44
if ENABLE_MKL
45
  libamdis_la_CXXFLAGS += -DHAVE_MKL=1 -I${MKL_INC}
46 47
endif

48 49 50 51 52
if ENABLE_DUNE
  libamdis_la_CXXFLAGS += -DHAVE_DUNE=1
  AMDIS_INCLUDES += -I$(DUNE_DIR)
endif

53 54 55 56
if ENABLE_BOOST
  libamdis_la_CXXFLAGS += -DHAVE_BOOST=1
endif

57
TEMPLATE_INCLUDES = -I../lib/mtl4 
58 59

INCLUDES = $(AMDIS_INCLUDES) $(PARALLEL_INCLUDES) $(TEMPLATE_INCLUDES)
60 61

if AMDIS_DEBUG
62
  libamdis_la_CXXFLAGS += -g -O0 -Wall -DDEBUG=1 $(OPENMP_FLAG) $(INCLUDES) #-pedantic
63
else
64
  libamdis_la_CXXFLAGS += -O2 -Wall -DDEBUG=0 -DNDEBUG $(OPENMP_FLAG) -ftemplate-depth-100 $(INCLUDES) #-pedantic
65 66 67 68 69 70 71 72 73 74 75
endif


libamdis_la_SOURCES =  \
$(PARALLEL_AMDIS_SOURCES) \
$(SOURCE_DIR)/DOFIndexed.h $(SOURCE_DIR)/DOFIndexed.cc \
$(SOURCE_DIR)/GNUPlotWriter.h $(SOURCE_DIR)/GNUPlotWriter.cc \
$(SOURCE_DIR)/VertexVector.h $(SOURCE_DIR)/VertexVector.cc \
$(SOURCE_DIR)/PeriodicBC.h $(SOURCE_DIR)/PeriodicBC.cc \
$(SOURCE_DIR)/Recovery.h $(SOURCE_DIR)/Recovery.cc \
$(SOURCE_DIR)/RecoveryEstimator.h $(SOURCE_DIR)/RecoveryEstimator.cc \
76
$(SOURCE_DIR)/ResidualEstimator.h $(SOURCE_DIR)/ResidualEstimator.cc \
77 78
$(SOURCE_DIR)/Cholesky.h $(SOURCE_DIR)/Cholesky.cc \
$(SOURCE_DIR)/AdaptBase.h $(SOURCE_DIR)/AdaptBase.cc \
Thomas Witkowski's avatar
Thomas Witkowski committed
79 80
$(SOURCE_DIR)/ProblemIterationInterface.h \
$(SOURCE_DIR)/StandardProblemIteration.h $(SOURCE_DIR)/StandardProblemIteration.cc \
81 82
$(SOURCE_DIR)/ProblemScal.h $(SOURCE_DIR)/ProblemScal.cc \
$(SOURCE_DIR)/ProblemVec.h $(SOURCE_DIR)/ProblemVec.cc \
83
$(SOURCE_DIR)/ProblemVecDbg.h $(SOURCE_DIR)/ProblemVecDbg.cc \
84 85 86
$(SOURCE_DIR)/DualTraverse.h $(SOURCE_DIR)/DualTraverse.cc \
$(SOURCE_DIR)/ElementPartition_ED.h $(SOURCE_DIR)/SurfacePartition_ED.h \
$(SOURCE_DIR)/ElementData.h $(SOURCE_DIR)/ElementData.cc \
Thomas Witkowski's avatar
Thomas Witkowski committed
87
$(SOURCE_DIR)/ComponentTraverseInfo.h $(SOURCE_DIR)/ComponentTraverseInfo.cc \
88 89
$(SOURCE_DIR)/CreatorMap.h $(SOURCE_DIR)/CreatorMap.hh $(SOURCE_DIR)/CreatorMap.cc \
$(SOURCE_DIR)/CreatorInterface.h \
90 91 92
$(SOURCE_DIR)/ElementFunction.h \
$(SOURCE_DIR)/ProblemInterpolScal.h $(SOURCE_DIR)/ProblemInterpolScal.cc \
$(SOURCE_DIR)/ProblemInterpolVec.h $(SOURCE_DIR)/ProblemInterpolVec.cc \
Thomas Witkowski's avatar
Thomas Witkowski committed
93 94 95
$(SOURCE_DIR)/Serializable.h \
$(SOURCE_DIR)/BallProject.h \
$(SOURCE_DIR)/CylinderProject.h \
96 97 98
$(SOURCE_DIR)/MacroReader.h $(SOURCE_DIR)/MacroReader.cc \
$(SOURCE_DIR)/ValueReader.h $(SOURCE_DIR)/ValueReader.cc \
$(SOURCE_DIR)/Projection.h $(SOURCE_DIR)/Projection.cc \
99 100 101 102
$(SOURCE_DIR)/SubAssembler.h $(SOURCE_DIR)/SubAssembler.cc \
$(SOURCE_DIR)/ZeroOrderAssembler.h $(SOURCE_DIR)/ZeroOrderAssembler.cc \
$(SOURCE_DIR)/FirstOrderAssembler.h $(SOURCE_DIR)/FirstOrderAssembler.cc \
$(SOURCE_DIR)/SecondOrderAssembler.h $(SOURCE_DIR)/SecondOrderAssembler.cc \
103 104 105 106 107 108
$(SOURCE_DIR)/Assembler.h $(SOURCE_DIR)/Assembler.cc \
$(SOURCE_DIR)/AdaptInfo.h $(SOURCE_DIR)/AdaptInfo.cc \
$(SOURCE_DIR)/Marker.h $(SOURCE_DIR)/Marker.cc \
$(SOURCE_DIR)/SystemVector.h \
$(SOURCE_DIR)/SurfaceQuadrature.h $(SOURCE_DIR)/SurfaceQuadrature.cc \
$(SOURCE_DIR)/LeafData.h $(SOURCE_DIR)/LeafData.cc \
Thomas Witkowski's avatar
Thomas Witkowski committed
109 110
$(SOURCE_DIR)/BoundaryManager.h $(SOURCE_DIR)/BoundaryManager.cc \
$(SOURCE_DIR)/BoundaryCondition.h \
111 112 113 114 115 116
$(SOURCE_DIR)/DirichletBC.h $(SOURCE_DIR)/DirichletBC.cc \
$(SOURCE_DIR)/RobinBC.h $(SOURCE_DIR)/RobinBC.cc \
$(SOURCE_DIR)/AbstractFunction.h \
$(SOURCE_DIR)/ProblemStatBase.h \
$(SOURCE_DIR)/DOFContainer.h \
$(SOURCE_DIR)/FileWriter.h $(SOURCE_DIR)/FileWriter.hh $(SOURCE_DIR)/FileWriter.cc \
117
$(SOURCE_DIR)/ElementFileWriter.h $(SOURCE_DIR)/ElementFileWriter.cc \
118
$(SOURCE_DIR)/ElInfo.cc \
Thomas Witkowski's avatar
Thomas Witkowski committed
119
$(SOURCE_DIR)/ElInfoStack.h $(SOURCE_DIR)/ElInfoStack.cc \
120 121
$(SOURCE_DIR)/Operator.h $(SOURCE_DIR)/Operator.cc \
$(SOURCE_DIR)/Mesh.cc \
122 123
$(SOURCE_DIR)/MeshStructure.h $(SOURCE_DIR)/MeshStructure.cc \
$(SOURCE_DIR)/MeshStructure_ED.h \
124 125 126 127 128 129
$(SOURCE_DIR)/AMDiS.h \
$(SOURCE_DIR)/AdaptStationary.h $(SOURCE_DIR)/AdaptStationary.cc \
$(SOURCE_DIR)/AdaptInstationary.h $(SOURCE_DIR)/AdaptInstationary.cc \
$(SOURCE_DIR)/QPsiPhi.h \
$(SOURCE_DIR)/BasisFunction.h \
$(SOURCE_DIR)/Boundary.h \
130
$(SOURCE_DIR)/ITL_Solver.h \
131 132
$(SOURCE_DIR)/CoarseningManager.h \
$(SOURCE_DIR)/CoarseningManager1d.h $(SOURCE_DIR)/CoarseningManager2d.h $(SOURCE_DIR)/CoarseningManager3d.h \
133 134 135 136 137 138 139 140 141 142 143 144 145
$(SOURCE_DIR)/DOFAdmin.h \
$(SOURCE_DIR)/DOFIterator.h \
$(SOURCE_DIR)/DOFMatrix.h \
$(SOURCE_DIR)/DOFVector.h $(SOURCE_DIR)/DOFVector.hh $(SOURCE_DIR)/DOFVector.cc \
$(SOURCE_DIR)/Element.h $(SOURCE_DIR)/ElementConnection.h \
$(SOURCE_DIR)/ElInfo.h $(SOURCE_DIR)/ElInfo1d.h $(SOURCE_DIR)/ElInfo2d.h $(SOURCE_DIR)/ElInfo3d.h \
$(SOURCE_DIR)/Error.h $(SOURCE_DIR)/Error.hh \
$(SOURCE_DIR)/Estimator.h $(SOURCE_DIR)/Estimator.cc \
$(SOURCE_DIR)/FiniteElemSpace.h \
$(SOURCE_DIR)/FixVec.h $(SOURCE_DIR)/FixVec.hh \
$(SOURCE_DIR)/FixVecConvert.h \
$(SOURCE_DIR)/Flag.h \
$(SOURCE_DIR)/Global.h \
146
$(SOURCE_DIR)/UmfPackSolver.h \ $(SOURCE_DIR)/UmfPackSolver.hh \
147
$(SOURCE_DIR)/Lagrange.h $(SOURCE_DIR)/Line.h \
148 149 150 151 152
$(SOURCE_DIR)/MacroElement.h $(SOURCE_DIR)/MacroWriter.h \
$(SOURCE_DIR)/Markings.h $(SOURCE_DIR)/Markings.hh \
$(SOURCE_DIR)/Mesh.h \
$(SOURCE_DIR)/Parameters.h \
$(SOURCE_DIR)/Parametric.h \
153
$(SOURCE_DIR)/Quadrature.h \
154 155
$(SOURCE_DIR)/RCNeighbourList.h \
$(SOURCE_DIRe)/RefinementManager.h \
156 157 158
$(SOURCE_DIR)/RefinementManager1d.h \
$(SOURCE_DIR)/RefinementManager2d.h \
$(SOURCE_DIR)/RefinementManager3d.h \
159 160 161 162 163 164 165 166
$(SOURCE_DIR)/TecPlotWriter.h $(SOURCE_DIR)/TecPlotWriter.hh \
$(SOURCE_DIR)/Tetrahedron.h \
$(SOURCE_DIR)/Traverse.h \
$(SOURCE_DIR)/Triangle.h \
$(SOURCE_DIR)/NonLinSolver.h $(SOURCE_DIR)/NonLinSolver.hh \
$(SOURCE_DIR)/ProblemInstat.h $(SOURCE_DIR)/ProblemInstat.cc \
$(SOURCE_DIR)/ProblemTimeInterface.h \
$(SOURCE_DIR)/ProblemNonLin.h $(SOURCE_DIR)/ProblemNonLin.cc \
167
$(SOURCE_DIR)/NonLinUpdater.h $(SOURCE_DIR)/NonLinUpdater.cc \
168 169 170 171 172 173 174 175 176 177 178 179 180 181
$(SOURCE_DIR)/Newton.h $(SOURCE_DIR)/Newton.hh  \
$(SOURCE_DIR)/NewtonFS.h $(SOURCE_DIR)/NewtonFS.hh \
$(SOURCE_DIR)/GridWriter.h $(SOURCE_DIR)/GridWriter.hh \
$(SOURCE_DIR)/ValueWriter.h \
$(SOURCE_DIR)/QPsiPhi.cc \
$(SOURCE_DIR)/BasisFunction.cc \
$(SOURCE_DIR)/Boundary.cc \
$(SOURCE_DIR)/CoarseningManager.cc \
$(SOURCE_DIR)/CoarseningManager1d.cc \
$(SOURCE_DIR)/CoarseningManager2d.cc \
$(SOURCE_DIR)/CoarseningManager3d.cc \
$(SOURCE_DIR)/DOFAdmin.cc \
$(SOURCE_DIR)/DOFMatrix.cc \
$(SOURCE_DIR)/Element.cc \
182 183 184
$(SOURCE_DIR)/ElInfo1d.cc \
$(SOURCE_DIR)/ElInfo2d.cc \
$(SOURCE_DIR)/ElInfo3d.cc \
185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201
$(SOURCE_DIR)/FiniteElemSpace.cc \
$(SOURCE_DIR)/FixVec.cc \
$(SOURCE_DIR)/Global.cc \
$(SOURCE_DIR)/Lagrange.cc \
$(SOURCE_DIR)/Line.cc \
$(SOURCE_DIR)/MacroElement.cc \
$(SOURCE_DIR)/MacroWriter.cc \
$(SOURCE_DIR)/Parameters.cc \
$(SOURCE_DIR)/Parametric.cc \
$(SOURCE_DIR)/Quadrature.cc \
$(SOURCE_DIR)/RCNeighbourList.cc \
$(SOURCE_DIR)/RefinementManager.cc \
$(SOURCE_DIR)/RefinementManager1d.cc \
$(SOURCE_DIR)/RefinementManager2d.cc \
$(SOURCE_DIR)/RefinementManager3d.cc \
$(SOURCE_DIR)/Tetrahedron.cc \
$(SOURCE_DIR)/Traverse.cc \
202
$(SOURCE_DIR)/TraverseParallel.h $(SOURCE_DIR)/TraverseParallel.cc \
203 204 205
$(SOURCE_DIR)/Triangle.cc \
$(SOURCE_DIR)/TecPlotWriter.cc \
$(SOURCE_DIR)/ValueWriter.cc \
206
$(SOURCE_DIR)/VtkWriter.h $(SOURCE_DIR)/VtkWriter.cc \
207
$(SOURCE_DIR)/PngWriter.h $(SOURCE_DIR)/PngWriter.cc \
Thomas Witkowski's avatar
Thomas Witkowski committed
208
$(SOURCE_DIR)/PovrayWriter.h $(SOURCE_DIR)/PovrayWriter.cc \
209
$(SOURCE_DIR)/DataCollector.h $(SOURCE_DIR)/DataCollector.cc \
210 211 212
$(SOURCE_DIR)/ElementInfo.h \
$(SOURCE_DIR)/VertexInfo.h \
$(SOURCE_DIR)/PeriodicInfo.h \
213
$(SOURCE_DIR)/OpenMP.h \
214 215
$(SOURCE_DIR)/ScalableQuadrature.h $(SOURCE_DIR)/ScalableQuadrature.cc \
$(SOURCE_DIR)/SubElInfo.h $(SOURCE_DIR)/SubElInfo.cc \
216
$(SOURCE_DIR)/SolutionDataStorage.h $(SOURCE_DIR)/SolutionDataStorage.hh \
217
$(SOURCE_DIR)/InteriorBoundary.h $(SOURCE_DIR)/InteriorBoundary.cc \
218
$(SOURCE_DIR)/ElementDofIteartor.h $(SOURCE_DIR)/ElementDofIterator.cc \
219
$(SOURCE_DIR)/Debug.h $(SOURCE_DIR)/Debug.cc \
220 221
$(SOURCE_DIR)/parareal/ProblemBase.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.h $(SOURCE_DIR)/parareal/AdaptParaReal.cc
222 223 224 225


COMPOSITE_SOURCE_DIR = ../compositeFEM/src

226 227
libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)

228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247

libcompositeFEM_la_SOURCES = $(COMPOSITE_SOURCE_DIR)/CFE_Integration.h \
$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc \
$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.h \
$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.cc \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.h \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.cc \
$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.h \
$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.cc \
$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.h \
$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.cc \
$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.h \
$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.cc \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.h \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.cc \
$(COMPOSITE_SOURCE_DIR)/SubPolytope.h $(COMPOSITE_SOURCE_DIR)/SubPolytope.cc \
$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.h \
$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.cc \
$(COMPOSITE_SOURCE_DIR)/TranslateLsFct.h