PetscSolverNavierStokes2.cc 12.4 KB
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/******************************************************************************
 *
 * AMDiS - Adaptive multidimensional simulations
 *
 * Copyright (C) 2013 Dresden University of Technology. All Rights Reserved.
 * Web: https://fusionforge.zih.tu-dresden.de/projects/amdis
 *
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 * Authors:
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 * Simon Vey, Thomas Witkowski, Andreas Naumann, Simon Praetorius, et al.
 *
 * This file is provided AS IS with NO WARRANTY OF ANY KIND, INCLUDING THE
 * WARRANTY OF DESIGN, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
 *
 *
 * This file is part of AMDiS
 *
 * See also license.opensource.txt in the distribution.
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 *
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 ******************************************************************************/



#include "preconditioner/PetscSolverNavierStokes2.h"
#include "parallel/PetscHelper.h"
#include "TransformDOF.h"
#include "DirichletBC.h"
#include "Functors.h"

namespace AMDiS { namespace Parallel {

  using namespace std;


  PetscErrorCode pcSchurShell2(PC pc, Vec x, Vec y)
  {
    void *ctx;
    PCShellGetContext(pc, &ctx);
    NavierStokesSchurData2* data = static_cast<NavierStokesSchurData2*>(ctx);

    // Project out constant null space
    {
      int vecSize;
      VecGetSize(x, &vecSize);
      PetscScalar vecSum;
      VecSum(x, &vecSum);
      vecSum = vecSum / static_cast<PetscScalar>(-1.0 * vecSize);
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      VecShift(x, vecSum);
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    }

    KSPSolve(data->kspLaplace, x, y);
    MatMult(data->matConDif, y, x);
    KSPSolve(data->kspMass, x, y);
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    PetscFunctionReturn(0);
  }
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  PetscSolverNavierStokes2::PetscSolverNavierStokes2(string name)
    : PetscSolverGlobalMatrix(name, false),
      pressureComponent(-1),
      pressureNullSpace(true),
      useOldInitialGuess(false),
      velocitySolutionMode(0),
      massSolutionMode(0),
      laplaceSolutionMode(0),
      massMatrixSolver(NULL),
      laplaceMatrixSolver(NULL),
      nu(NULL),
      invTau(NULL),
      solution(NULL),
      phase(NULL)
  {
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    Parameters::get(name + "->navierstokes->pressure component",
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		    pressureComponent);
    TEST_EXIT(pressureComponent >= 0)
      ("For using PETSc stokes solver you must define a pressure component!\n");

    Parameters::get(name + "->navierstokes->pressure null space",
		    pressureNullSpace);
    TEST_EXIT(pressureNullSpace)("This is not yet tested, may be wrong!\n");

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    Parameters::get(name + "->navierstokes->use old initial guess",
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		    useOldInitialGuess);

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    Parameters::get(name + "->navierstokes->velocity solver",
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		    velocitySolutionMode);

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    Parameters::get(name + "->navierstokes->mass solver",
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		    massSolutionMode);

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    Parameters::get(name + "->navierstokes->laplace solver",
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		    laplaceSolutionMode);
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    Parameters::get(name + "->navierstokes->neumann boundary indices",
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		    neumannBC);
  }
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   int PetscSolverNavierStokes2::solveLinearSystem(const SolverMatrix<Matrix<DOFMatrix*> >& A,
				    SystemVector& x,
				    SystemVector& b,
				    bool createMatrixData,
				    bool storeMatrixData)
  {
    FUNCNAME("PetscSolverNavierStokes2::solveLinearSystem()");
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    TEST_EXIT(meshDistributor)("No meshDistributor provided. Should not happen!\n");

    MPI::COMM_WORLD.Barrier();
    Timer t;

    systemMat = A.getOriginalMat();
    if (createMatrixData)
      fillPetscMatrix(const_cast< Matrix< DOFMatrix* >* >(systemMat));

    fillPetscRhs(&b);

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    INFO(info, 8)("creation of parallel data structures needed %.5f seconds\n",
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		  t.elapsed());

    solvePetscMatrix(x, NULL);

    if (!storeMatrixData) {
      destroyVectorData();
      destroyMatrixData();
    }
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    return 0;
  }


  void PetscSolverNavierStokes2::initSolver(KSP &ksp)
  {
    // Create FGMRES based outer solver
    KSPCreate(domainComm, &ksp);
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#if (PETSC_VERSION_MINOR >= 5)
    KSPSetOperators(ksp, getMatInterior(), getMatInterior());
#else
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    KSPSetOperators(ksp, getMatInterior(), getMatInterior(), SAME_NONZERO_PATTERN);
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#endif
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    if (getInfo() >= 10)
      KSPMonitorSet(ksp, KSPMonitorDefault, PETSC_NULL, PETSC_NULL);
    else if (getInfo() >= 20)
      KSPMonitorSet(ksp, KSPMonitorTrueResidualNorm, PETSC_NULL, PETSC_NULL);
    petsc_helper::setSolver(ksp, "ns_", KSPFGMRES, PCNONE, getRelative(), getTolerance(), getMaxIterations());
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    // Create null space information.
    if (pressureNullSpace)
      setConstantNullSpace(ksp, pressureComponent, true);
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    if (useOldInitialGuess)
      KSPSetInitialGuessNonzero(ksp, PETSC_TRUE);
  }
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  void PetscSolverNavierStokes2::addDirichletBC(DOFMatrix& m, BoundaryType b)
  {
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    DirichletBC *dirichletApply =
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      new DirichletBC(b, new AMDiS::Const<double, WorldVector<double> >(0.0), m.getRowFeSpace(), m.getColFeSpace(), true);

    m.getBoundaryManager()->addBoundaryCondition(dirichletApply);
  }


  void PetscSolverNavierStokes2::initPreconditioner(PC pc)
  {
    FUNCNAME("PetscSolverNavierStokes2::initPreconditioner()");

    Timer t;

    TEST_EXIT(nu)("nu pointer not set!\n");
    TEST_EXIT(invTau)("invtau pointer not set!\n");
    TEST_EXIT(solution)("solution pointer not set!\n");

    int dow = Global::getGeo(WORLD);

    vector<int> velocityComponents;
    for (size_t i = 0; i < static_cast<size_t>(dow); i++)
      velocityComponents.push_back(i);

    PCSetType(pc, PCFIELDSPLIT);
    PCFieldSplitSetType(pc, PC_COMPOSITE_SCHUR);
    PCFieldSplitSetSchurFactType(pc, PC_FIELDSPLIT_SCHUR_FACT_FULL);

    createFieldSplit(pc, "velocity", velocityComponents);
    createFieldSplit(pc, "pressure", pressureComponent);
    PCSetFromOptions(pc);

    KSPSetUp(kspInterior);

    KSP *subKsp;
    int nSubKsp;
    PCFieldSplitGetSubKSP(pc, &nSubKsp, &subKsp);


    TEST_EXIT(nSubKsp == 2)
      ("Wrong numer of KSPs inside of the fieldsplit preconditioner!\n");

    KSP kspVelocity = subKsp[0];
    KSP kspSchur = subKsp[1];
    PetscFree(subKsp);

    switch (velocitySolutionMode) {
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    case 0:
      petsc_helper::setSolver(kspVelocity, "",
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 			      KSPRICHARDSON, PCHYPRE, 0.0, 1e-14, 1);
      break;
    case 1:
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      petsc_helper::setSolverWithLu(kspVelocity, "", KSPPREONLY,
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				    PCLU, MATSOLVERMUMPS , 0.0, 1e-14, 1);
      break;
    default:
      ERROR_EXIT("No velocity solution mode %d available!\n", velocitySolutionMode);
    }
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    KSPSetType(kspSchur, KSPPREONLY);
    PC pcSub;
    KSPGetPC(kspSchur, &pcSub);
    PCSetType(pcSub, PCSHELL);
    PCShellSetApply(pcSub, pcSchurShell2);
    PCShellSetContext(pcSub, &matShellContext);

    if (pressureNullSpace)
      setConstantNullSpace(kspSchur);
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    // === Mass matrix solver ===

    const FiniteElemSpace *pressureFeSpace = componentSpaces[pressureComponent];
    DOFMatrix massMatrix(pressureFeSpace, pressureFeSpace);
    {
      Operator massOp(pressureFeSpace, pressureFeSpace);
      ZeroOrderTerm *massTerm = NULL;
      if ((!phase) || (*nu == 0.0))
	massTerm = new Simple_ZOT;
      else
        massTerm = new VecAtQP_ZOT(phase);
      massOp.addTerm(massTerm);
      massMatrix.assembleOperator(massOp);
      delete massTerm;
    }
    massMatrixSolver = createSubSolver(pressureComponent, "mass_");
    massMatrixSolver->fillPetscMatrix(&massMatrix);

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    if (neumannBC.size() > 0) {
      MSG("Number of neumann boundary indices: %d\n", neumannBC.size());
    }
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    // === Laplace matrix solver ===

    DOFMatrix laplaceMatrix(pressureFeSpace, pressureFeSpace);
    {
      Operator laplaceOp(pressureFeSpace, pressureFeSpace);
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      SecondOrderTerm *laplaceTerm = NULL;
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      if ((!phase) || (*nu == 0.0))
	laplaceTerm = new Simple_SOT;
      else
	laplaceTerm = new VecAtQP_SOT(phase);
      laplaceOp.addTerm(laplaceTerm);
      for (size_t i = 0; i < neumannBC.size(); i++)
	addDirichletBC(laplaceMatrix, neumannBC[i]);
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      laplaceMatrix.assembleOperator(laplaceOp);
      delete laplaceTerm;
    }
    laplaceMatrixSolver = createSubSolver(pressureComponent, string("laplace_"));
    laplaceMatrixSolver->fillPetscMatrix(&laplaceMatrix);


    // === Create convection-diffusion operator ===

    DOFVector<double> vx(pressureFeSpace, "vx");
    DOFVector<double> vy(pressureFeSpace, "vy");
    DOFVector<double> vz(pressureFeSpace, "vz");
    DOFVector<double> vp(pressureFeSpace, "vp");
    vx.interpol(solution->getDOFVector(0));
    if (dow >= 2)
      vy.interpol(solution->getDOFVector(1));
    if (dow >= 3)
      vz.interpol(solution->getDOFVector(2));

    DOFMatrix conDifMatrix(pressureFeSpace, pressureFeSpace);

    {
      Operator conDifOp(pressureFeSpace, pressureFeSpace);
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      ZeroOrderTerm *conDif0 = NULL;
      SecondOrderTerm *conDif1 = NULL;
      FirstOrderTerm *conDif2 = NULL, *conDif3 = NULL, *conDif4 = NULL;

      if (!phase) {
	MSG("INIT WITHOUT PHASE!\n");
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	conDif0 = new Simple_ZOT(*invTau);
	conDifOp.addTerm(conDif0);
	conDif1 = new Simple_SOT(*nu);
	conDifOp.addTerm(conDif1);
	conDif2 = new VecAtQP_FOT(&vx, NULL, 0);
	conDifOp.addTerm(conDif2, GRD_PHI);
	if (dow >= 2) {
	  conDif3 = new VecAtQP_FOT(&vy, NULL, 1);
	  conDifOp.addTerm(conDif3, GRD_PHI);
	}
	if (dow == 3) {
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	  conDif4 = new VecAtQP_FOT(&vz, NULL, 2);
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	  conDifOp.addTerm(conDif4, GRD_PHI);
	}
      } else { // no phase given
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	vp.interpol(phase);
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	if (*nu > 0.0) {
	  conDif0 = new VecAtQP_ZOT(&vp, NULL, *invTau);
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	  conDifOp.addTerm(conDif0);
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	  conDif1 = new VecAtQP_SOT(&vp, NULL, *nu);
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	  conDifOp.addTerm(conDif1);
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	  conDif2 = new Vec2AtQP_FOT(&vx, &vp, NULL, 0);
	  conDifOp.addTerm(conDif2, GRD_PHI);
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	  if (dow >= 2) {
	    conDif3 = new Vec2AtQP_FOT(&vy, &vp, NULL, 1);
	    conDifOp.addTerm(conDif3, GRD_PHI);
	  }
	  if (dow == 3) {
	    conDif4 = new Vec2AtQP_FOT(&vz, &vp, NULL, 2);
	    conDifOp.addTerm(conDif4, GRD_PHI);
	  }
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	} else {
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	  conDif0 = new VecAtQP_ZOT(&vp, new LinearInterpolation(*rho1,*rho2,*invTau));
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	  conDifOp.addTerm(conDif0);
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	  conDif1 = new VecAtQP_SOT(&vp, new LinearInterpolation(*nu1,*nu2));
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	  conDifOp.addTerm(conDif1);
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	  conDif2 = new Vec2AtQP_FOT(&vx, &vp, new LinearInterpolation2(*rho1,*rho2), 0);
	  conDifOp.addTerm(conDif2, GRD_PHI);
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	  if (dow >= 2) {
	    conDif3 = new Vec2AtQP_FOT(&vy, &vp, new LinearInterpolation2(*rho1,*rho2), 1);
	    conDifOp.addTerm(conDif3, GRD_PHI);
	  }
	  if (dow == 3) {
	    conDif4 = new Vec2AtQP_FOT(&vz, &vp, new LinearInterpolation2(*rho1,*rho2), 2);
	    conDifOp.addTerm(conDif4, GRD_PHI);
	  }
	}
      }/**/

      for (size_t i = 0; i < neumannBC.size(); i++)
	addDirichletBC(conDifMatrix, neumannBC[i]);
      conDifMatrix.assembleOperator(conDifOp);

      delete conDif0;
      delete conDif1;
      delete conDif2;
      if (dow >= 2)
	delete conDif3;
      if (dow == 3)
	delete conDif4;
    }
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    conDifMatrixSolver = createSubSolver(pressureComponent, "condif_");
    conDifMatrixSolver->fillPetscMatrix(&conDifMatrix);


    // === Setup solver ===

    matShellContext.kspMass = massMatrixSolver->getSolver();
    matShellContext.kspLaplace = laplaceMatrixSolver->getSolver();
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    matShellContext.matConDif = conDifMatrixSolver->getMatInterior();
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    switch (massSolutionMode) {
    case 0:
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      petsc_helper::setSolver(matShellContext.kspMass, "mass_",
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			      KSPCG, PCJACOBI, 0.0, 1e-14, 2);
      break;
    case 1:
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      petsc_helper::setSolverWithLu(matShellContext.kspMass, "mass_", KSPRICHARDSON,
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				    PCLU, MATSOLVERMUMPS, 0.0, 1e-14, 1);
      break;
    default:
      ERROR_EXIT("No mass solution mode %d available!\n", massSolutionMode);
    }

    switch (laplaceSolutionMode) {
    case 0:
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      petsc_helper::setSolver(matShellContext.kspLaplace, "laplace_",
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 			      KSPRICHARDSON, PCHYPRE, 0.0, 1e-14, 1);
      break;
    case 1:
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      petsc_helper::setSolverWithLu(matShellContext.kspLaplace, "laplace_",
				    KSPRICHARDSON, PCLU, MATSOLVERMUMPS,
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				    0.0, 1e-14, 1);
      break;
    default:
      ERROR_EXIT("No laplace solution mode %d available!\n", laplaceSolutionMode);
    }

    setConstantNullSpace(matShellContext.kspLaplace);

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    MSG("Setup of Navier-Stokes preconditioner needed %.5f seconds\n",
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	t.elapsed());
  }


  void PetscSolverNavierStokes2::exitPreconditioner(PC pc)
  {
    FUNCNAME("PetscSolverNavierStokes2::exitPreconditioner()");

    massMatrixSolver->destroyMatrixData();
    massMatrixSolver->destroyVectorData();
    laplaceMatrixSolver->destroyMatrixData();
    laplaceMatrixSolver->destroyVectorData();
    conDifMatrixSolver->destroyMatrixData();
    conDifMatrixSolver->destroyVectorData();

    massMatrixSolver->destroyVectorData();
    laplaceMatrixSolver->destroyVectorData();
    conDifMatrixSolver->destroyVectorData();
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    delete massMatrixSolver;
    massMatrixSolver = NULL;

    delete laplaceMatrixSolver;
    laplaceMatrixSolver = NULL;

    delete conDifMatrixSolver;
    conDifMatrixSolver = NULL;
  }
} }