CMakeLists.txt 11.1 KB
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project(AMDiS)
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cmake_minimum_required(VERSION 2.8)

set(AMDiS_SOURCE_DIR "${AMDiS_SOURCE_DIR}/src")
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#needs: --enable-debug, enable-intel --enable-openmp --enable-parmetis --enable-parallel-domain --enable-umfpack --enable-mkl --enable-boost --enable-marmot

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SET(LIB_DIR ./lib)
SET(SOURCE_DIR ${AMDiS_SOURCE_DIR})

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#TODO: use the cmake build type
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SET(MTL_DIR ${LIB_DIR}/mtl4/ CACHE PATH "mtl4 directory")

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option(ENABLE_DEBUG "debug" false)
#option(ENABLE_INTEL "use intel compiler" false)
option(ENABLE_OPENMP "use openmp" false)
option(ENABLE_PARMETIS "use partion of unity and enable parmetis" false)
option(ENABLE_PARALLEL_DOMAIN "use parallel domain decomposition" false)
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SET(PETSC_DIR "" CACHE PATH "Petsc directory for parallel domain decomposition" )
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SET(PETSC_ARCH "" CACHE STRING "Petsc architecture")
option(ENABLE_UMFPACK "use umfpack solver" false)
option(ENABLE_MKL "use the mkl" false)
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SET(MKL_DIR "" CACHE PATH "MKL directory")
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option(ENABLE_DUNE "use dune" false)
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SET(DUNE_DIR "" CACHE PATH "Dune directory")
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#option(ENABLE_BOOST "use the boost library" false)
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option(ENABLE_MARMOT "use marmot" false)
option(ENABLE_GUI "compile the gui" false)
#option(ENABLE_TESTS "compile the tests" false)
SET(ENABLE_TESTS false)

if(ENABLE_INTEL)
	Message("please set the icc manually")
	INCLUDE (CMakeForceCompiler)
	CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
	CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
	#SET(CMAKE_C_COMPILER "icc")
endif(ENABLE_INTEL)

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#if(ENABLE_BOOST)
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	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_BOOST=1")
	find_package(Boost 1.42 REQUIRED)
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        if(Boost_FOUND)
		include_directories(${Boost_INCLUDE_DIR})
		message("boost lib-dirs: ${Boost_LIBRARY_DIRS}")
		message("use the boost dir: ${Boost_INCLUDE_DIR}")
		if(WIN32)
			message("the windows find_boost does not set the boost library paths, please set it")
			SET(Boost_LIBRARY_DIRS CACHE PATH "The directory containing the boost libraries")
		endif(WIN32)		
		link_directories(${Boost_LIBRARY_DIRS})
	endif(Boost_FOUND)
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#endif(ENABLE_BOOST)
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SET(LIB_DIR ./lib)
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SET(SOURCE_DIR ${AMDiS_SOURCE_DIR})
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SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc 
	      ${SOURCE_DIR}/GNUPlotWriter.cc 
	      ${SOURCE_DIR}/VertexVector.cc 
	      ${SOURCE_DIR}/PeriodicBC.cc 
	      ${SOURCE_DIR}/Recovery.cc 
	      ${SOURCE_DIR}/RecoveryEstimator.cc 
	      ${SOURCE_DIR}/ResidualEstimator.cc 
	      ${SOURCE_DIR}/Cholesky.cc 
	      ${SOURCE_DIR}/AdaptBase.cc
	      ${SOURCE_DIR}/StandardProblemIteration.cc 
	      ${SOURCE_DIR}/ProblemScal.cc 
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	      ${SOURCE_DIR}/ProblemVec.cc
	      ${SOURCE_DIR}/ProblemImplicit.cc 
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	      ${SOURCE_DIR}/ProblemVecDbg.cc 
	      ${SOURCE_DIR}/DualTraverse.cc 
	      ${SOURCE_DIR}/ElementData.cc 
	      ${SOURCE_DIR}/ComponentTraverseInfo.cc 
	      ${SOURCE_DIR}/CreatorMap.cc 
	      ${SOURCE_DIR}/ProblemInterpolScal.cc 
	      ${SOURCE_DIR}/ProblemInterpolVec.cc 
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              ${SOURCE_DIR}/MacroInfo.cc
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	      ${SOURCE_DIR}/MacroReader.cc 
	      ${SOURCE_DIR}/ValueReader.cc 
	      ${SOURCE_DIR}/Projection.cc 
	      ${SOURCE_DIR}/SubAssembler.cc 
	      ${SOURCE_DIR}/ZeroOrderAssembler.cc 
	      ${SOURCE_DIR}/FirstOrderAssembler.cc 
	      ${SOURCE_DIR}/SecondOrderAssembler.cc 
	      ${SOURCE_DIR}/Assembler.cc 
	      ${SOURCE_DIR}/AdaptInfo.cc 
	      ${SOURCE_DIR}/Marker.cc 
	      ${SOURCE_DIR}/SurfaceQuadrature.cc 
	      ${SOURCE_DIR}/LeafData.cc 
	      ${SOURCE_DIR}/BoundaryManager.cc 
	      ${SOURCE_DIR}/DirichletBC.cc 
	      ${SOURCE_DIR}/RobinBC.cc  
	      ${SOURCE_DIR}/FileWriter.cc 
	      ${SOURCE_DIR}/ElementFileWriter.cc 
	      ${SOURCE_DIR}/ElInfo.cc 
	      ${SOURCE_DIR}/ElInfoStack.cc 
	      ${SOURCE_DIR}/OperatorTerm.cc 
              ${SOURCE_DIR}/ZeroOrderTerm.cc 
	      ${SOURCE_DIR}/FirstOrderTerm.cc 
	      ${SOURCE_DIR}/SecondOrderTerm.cc 
              ${SOURCE_DIR}/Operator.cc 
	      ${SOURCE_DIR}/Mesh.cc 
	      ${SOURCE_DIR}/MeshStructure.cc 
	      ${SOURCE_DIR}/AdaptStationary.cc  
	      ${SOURCE_DIR}/AdaptInstationary.cc
	      ${SOURCE_DIR}/DOFVector.cc 
	      ${SOURCE_DIR}/Estimator.cc 
	      ${SOURCE_DIR}/ProblemInstat.cc 
	      ${SOURCE_DIR}/ProblemNonLin.cc 
	      ${SOURCE_DIR}/NonLinUpdater.cc 
	      ${SOURCE_DIR}/QPsiPhi.cc 
	      ${SOURCE_DIR}/BasisFunction.cc 
	      ${SOURCE_DIR}/Boundary.cc 
	      ${SOURCE_DIR}/CoarseningManager.cc 
	      ${SOURCE_DIR}/CoarseningManager1d.cc 
	      ${SOURCE_DIR}/CoarseningManager2d.cc 
	      ${SOURCE_DIR}/CoarseningManager3d.cc 
	      ${SOURCE_DIR}/DOFAdmin.cc 
	      ${SOURCE_DIR}/DOFMatrix.cc 
	      ${SOURCE_DIR}/Element.cc 
	      ${SOURCE_DIR}/ElInfo1d.cc 
	      ${SOURCE_DIR}/ElInfo2d.cc 
	      ${SOURCE_DIR}/ElInfo3d.cc 
	      ${SOURCE_DIR}/FiniteElemSpace.cc 
	      ${SOURCE_DIR}/FixVec.cc 
	      ${SOURCE_DIR}/Global.cc 
	      ${SOURCE_DIR}/Lagrange.cc 
	      ${SOURCE_DIR}/Line.cc 
	      ${SOURCE_DIR}/MacroElement.cc 
	      ${SOURCE_DIR}/MacroWriter.cc 
	      ${SOURCE_DIR}/Parameters.cc 
	      ${SOURCE_DIR}/Parametric.cc 
	      ${SOURCE_DIR}/Quadrature.cc 
	      ${SOURCE_DIR}/RCNeighbourList.cc 
	      ${SOURCE_DIR}/RefinementManager.cc 
	      ${SOURCE_DIR}/RefinementManager1d.cc 
	      ${SOURCE_DIR}/RefinementManager2d.cc 
	      ${SOURCE_DIR}/RefinementManager3d.cc 
	      ${SOURCE_DIR}/Tetrahedron.cc 
	      ${SOURCE_DIR}/Traverse.cc 
	      ${SOURCE_DIR}/TraverseParallel.cc 
	      ${SOURCE_DIR}/Triangle.cc 
	      ${SOURCE_DIR}/TecPlotWriter.cc 
	      ${SOURCE_DIR}/ValueWriter.cc 
	      ${SOURCE_DIR}/VtkWriter.cc 
	      ${SOURCE_DIR}/PngWriter.cc 
	      ${SOURCE_DIR}/PovrayWriter.cc 
	      ${SOURCE_DIR}/DataCollector.cc 
	      ${SOURCE_DIR}/ScalableQuadrature.cc 
	      ${SOURCE_DIR}/SubElInfo.cc 
	      ${SOURCE_DIR}/parallel/InteriorBoundary.cc 
	      ${SOURCE_DIR}/ElementDofIterator.cc 
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	      ${SOURCE_DIR}/Debug.cc
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	      ${SOURCE_DIR}/ArhReader.cc
	      ${SOURCE_DIR}/ArhWriter.cc
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              ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockStationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockMethod.cc
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	      )

if(ENABLE_PARMETIS)
	find_package(MPI REQUIRED)
	INCLUDE (CMakeForceCompiler)	
	CMAKE_FORCE_C_COMPILER(mpicc "MPI C compiler")
	CMAKE_FORCE_CXX_COMPILER(mpiCC "MPI C++ compiler")

	include_directories( ${LIB_DIR}/ParMetis-3.1)
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        INSTALL(FILES ${LIB_DIR}/ParMetis-3.1/parmetis.h
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		${LIB_DIR}/ParMetis-3.1/libparmetis.a
		${LIB_DIR}/ParMetis-3.1/libmetis.a
		DESTINATION lib/parmetis
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	       )
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endif(ENABLE_PARMETIS)

if(ENABLE_PARALLEL_DOMAIN)
	include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
	SET(PARALLEL_DOMAIN_AMDIS_SRC
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                ${SOURCE_DIR}/parallel/ParMetisPartitioner.cc
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		${SOURCE_DIR}/parallel/MeshDistributor.cc 
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		${SOURCE_DIR}/parallel/StdMpi.cc
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		${SOURCE_DIR}/parallel/ParallelDebug.cc
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		${SOURCE_DIR}/parallel/GlobalMatrixSolver.cc
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		${SOURCE_DIR}/parallel/MpiHelper.cc
		${SOURCE_DIR}/parallel/ElementObjectData.cc)
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	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_DOMAIN_AMDIS=1")
endif(ENABLE_PARALLEL_DOMAIN)

if(ENABLE_DEBUG)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -g -O0 -DDEBUG=1")
endif(ENABLE_DEBUG)

if(ENABLE_OPENMP)
	if(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -openmp")
	else(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -fopenmp")
	endif(ENABLE_INTEL)
endif(ENABLE_OPENMP)

if(ENABLE_UMFPACK)
	include_directories(${LIB_DIR}/UFconfig ${LIB_DIR}/AMD/Include ${LIB_DIR}/UMFPACK/Include)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK")
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        FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/UMFPACK/Include/*.h")
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	INSTALL(FILES ${UMFPACK_HEADERS} 
		DESTINATION include/amdis/umfpack/)
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	FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/AMD/Include/*.h")
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	INSTALL(FILES ${UMFPACK_HEADERS} 
		DESTINATION include/amdis/amd/)
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	FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/*.h")
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	INSTALL(FILES ${HEADERS} 
		DESTINATION include/amdis/ufconfig/)
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	FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/xerbla/*.h")
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	INSTALL(FILES ${HEADERS} 
		DESTINATION include/amdis/ufconfig/xerbla)
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	INSTALL(FILES ${LIB_DIR}/UMFPACK/Lib/libumfpack.a 
		DESTINATION lib/amdis/umfpack/)
	INSTALL(FILES ${LIB_DIR}/AMD/Lib/libamd.a 
		DESTINATION lib/amdis/amd/)
	SET(RPM_DEPEND_STR "blas")
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endif(ENABLE_UMFPACK)

if(ENABLE_MKL)
	include_directories(${MKL_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_MKL=1")
endif(ENABLE_MKL)

if(ENABLE_DUNE)
	include_directories(${DUNE_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_DUNE=1")
endif(ENABLE_DUNE)

SET(COMPOSITE_SOURCE_DIR compositeFEM/src)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc 
		      ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc 
		      ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )

#mtl4 includes
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include_directories(${MTL_DIR})
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include_directories(${SOURCE_DIR})

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add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
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add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
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target_link_libraries(compositeFEM amdis)
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if(WIN32)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -D_SCL_SECURE_NO_WARNINGS -D_CRT_SECURE_NO_WARNINGS")
endif(WIN32)
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message("compileflags: ${COMPILEFLAGS}")
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SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
if(ENABLE_MARMOT)
	Message("please set marmotcc manually")
endif(ENABLE_MARMOT)

install(TARGETS amdis compositeFEM 
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	LIBRARY DESTINATION lib/amdis/ )
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FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.h")
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INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)
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FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.hh")
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INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)
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FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/parallel/*.h")
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INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/parallel/)
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FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/time/*.h")
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INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/time/)
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FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/itl/*.hpp")
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INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/itl)
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configure_file(${AMDiS_BINARY_DIR}/AMDiSConfig.cmake.in
		${AMDiS_BINARY_DIR}/AMDiSConfig.cmake
		@ONLY
	      )
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INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSConfig.cmake 
	DESTINATION share/amdis/)
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSUse.cmake 
	DESTINATION share/amdis/)
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#install mtl
INSTALL(DIRECTORY ${CMAKE_BINARY_DIR}/lib/mtl4/
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	DESTINATION include/amdis/mtl4/
	FILES_MATCHING PATTERN "*.hpp"
	PATTERN ".svn" EXCLUDE
	PATTERN ".svn/*" EXCLUDE
	PATTERN "mtl4/libs" EXCLUDE
	PATTERN "mtl4/extern" EXCLUDE
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       )
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#PACKAGES
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set(CPACK_PACKAGE_NAME "AMDiS")
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set(CPACK_PACKAGE_CONTACT "Andreas.Naumann@tu-dresden.de")
set(CPACK_GENERATOR "RPM" "DEB" "TGZ")
set(CPACK_INSTALL_PREFIX "/usr/")

set(CPACK_RPM_PACKAGE_REQUIRES "boost-devel >= 1.42, ${RPM_DEPEND_STR}")
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set(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-dev (>= 1.42)")
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include(CPack)
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if(ENABLE_TESTS)
#ENABLE_TESTING()
#add_test(demo_test run_test.sh)

#add_test(demo_test ${CMAKE_CTEST_COMMAND} --build-and-test "${CMAKE_SOURCE_DIR}/test/demo_test" "${CMAKE_BINARY_DIR}/test/demo_test" --build-generator "${CMAKE_GENERATOR}" --build-makeprogram "${CMAKE_MAKE_PROGRAM}" "${CMAKE_BINARY_DIR}/test/demo_test")
endif(ENABLE_TESTS)