CMakeLists.txt 11.6 KB
Newer Older
1
project(AMDiS)
Naumann, Andreas's avatar
Naumann, Andreas committed
2

3
4
5
cmake_minimum_required(VERSION 2.8)

set(AMDiS_SOURCE_DIR "${AMDiS_SOURCE_DIR}/src")
Naumann, Andreas's avatar
Naumann, Andreas committed
6
7
#needs: --enable-debug, enable-intel --enable-openmp --enable-parmetis --enable-parallel-domain --enable-umfpack --enable-mkl --enable-boost --enable-marmot

8
9
10
SET(LIB_DIR ./lib)
SET(SOURCE_DIR ${AMDiS_SOURCE_DIR})

11
#TODO: use the cmake build type
12
13
SET(MTL_DIR ${LIB_DIR}/mtl4/ CACHE PATH "mtl4 directory")

14
15
16
17
18
19
20
21
set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -g -Wall -DDEBUG=0")
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -DDEBUG=1 -O0")

#define the build type, empty can be everything and nothing
if(CMAKE_BUILD_TYPE STREQUAL "")
	set(CMAKE_BUILD_TYPE "Release")
endif()

Naumann, Andreas's avatar
Naumann, Andreas committed
22
23
24
#option(ENABLE_INTEL "use intel compiler" false)
option(ENABLE_OPENMP "use openmp" false)
option(ENABLE_PARALLEL_DOMAIN "use parallel domain decomposition" false)
25
26
27
set(ENABLE_PARMETIS off)
#SET(PETSC_DIR "" CACHE PATH "Petsc directory for parallel domain decomposition" )
#SET(PETSC_ARCH "" CACHE STRING "Petsc architecture")
Naumann, Andreas's avatar
Naumann, Andreas committed
28
29
option(ENABLE_UMFPACK "use umfpack solver" false)
option(ENABLE_MKL "use the mkl" false)
30
SET(MKL_DIR "" CACHE PATH "MKL directory")
Naumann, Andreas's avatar
Naumann, Andreas committed
31
32
33
34
35
36
37
38
39
40
41
#option(ENABLE_TESTS "compile the tests" false)
SET(ENABLE_TESTS false)

if(ENABLE_INTEL)
	Message("please set the icc manually")
	INCLUDE (CMakeForceCompiler)
	CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
	CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
	#SET(CMAKE_C_COMPILER "icc")
endif(ENABLE_INTEL)

42
43
44
45
46
47
48
49
50
51
52
find_package(Boost 1.42 REQUIRED)
if(Boost_FOUND)
  include_directories(${Boost_INCLUDE_DIR})
  message("boost lib-dirs: ${Boost_LIBRARY_DIRS}")
  message("use the boost dir: ${Boost_INCLUDE_DIR}")
  if(WIN32)
	message("the windows find_boost does not set the boost library paths, please set it")
	SET(Boost_LIBRARY_DIRS CACHE PATH "The directory containing the boost libraries")
  endif(WIN32)		
  link_directories(${Boost_LIBRARY_DIRS})
endif(Boost_FOUND)
Naumann, Andreas's avatar
Naumann, Andreas committed
53

Naumann, Andreas's avatar
Naumann, Andreas committed
54
SET(LIB_DIR ./lib)
55
SET(SOURCE_DIR ${AMDiS_SOURCE_DIR})
56
57
58
59
60
61
62
63
64
65
66
SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc 
	      ${SOURCE_DIR}/GNUPlotWriter.cc 
	      ${SOURCE_DIR}/VertexVector.cc 
	      ${SOURCE_DIR}/PeriodicBC.cc 
	      ${SOURCE_DIR}/Recovery.cc 
	      ${SOURCE_DIR}/RecoveryEstimator.cc 
	      ${SOURCE_DIR}/ResidualEstimator.cc 
	      ${SOURCE_DIR}/Cholesky.cc 
	      ${SOURCE_DIR}/AdaptBase.cc
	      ${SOURCE_DIR}/StandardProblemIteration.cc 
	      ${SOURCE_DIR}/ProblemScal.cc 
67
68
	      ${SOURCE_DIR}/ProblemVec.cc
	      ${SOURCE_DIR}/ProblemImplicit.cc 
69
70
71
72
73
74
75
	      ${SOURCE_DIR}/ProblemVecDbg.cc 
	      ${SOURCE_DIR}/DualTraverse.cc 
	      ${SOURCE_DIR}/ElementData.cc 
	      ${SOURCE_DIR}/ComponentTraverseInfo.cc 
	      ${SOURCE_DIR}/CreatorMap.cc 
	      ${SOURCE_DIR}/ProblemInterpolScal.cc 
	      ${SOURCE_DIR}/ProblemInterpolVec.cc 
76
              ${SOURCE_DIR}/MacroInfo.cc
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
	      ${SOURCE_DIR}/MacroReader.cc 
	      ${SOURCE_DIR}/ValueReader.cc 
	      ${SOURCE_DIR}/Projection.cc 
	      ${SOURCE_DIR}/SubAssembler.cc 
	      ${SOURCE_DIR}/ZeroOrderAssembler.cc 
	      ${SOURCE_DIR}/FirstOrderAssembler.cc 
	      ${SOURCE_DIR}/SecondOrderAssembler.cc 
	      ${SOURCE_DIR}/Assembler.cc 
	      ${SOURCE_DIR}/AdaptInfo.cc 
	      ${SOURCE_DIR}/Marker.cc 
	      ${SOURCE_DIR}/SurfaceQuadrature.cc 
	      ${SOURCE_DIR}/LeafData.cc 
	      ${SOURCE_DIR}/BoundaryManager.cc 
	      ${SOURCE_DIR}/DirichletBC.cc 
	      ${SOURCE_DIR}/RobinBC.cc  
	      ${SOURCE_DIR}/FileWriter.cc 
	      ${SOURCE_DIR}/ElementFileWriter.cc 
	      ${SOURCE_DIR}/ElInfo.cc 
	      ${SOURCE_DIR}/ElInfoStack.cc 
	      ${SOURCE_DIR}/OperatorTerm.cc 
              ${SOURCE_DIR}/ZeroOrderTerm.cc 
	      ${SOURCE_DIR}/FirstOrderTerm.cc 
	      ${SOURCE_DIR}/SecondOrderTerm.cc 
              ${SOURCE_DIR}/Operator.cc 
	      ${SOURCE_DIR}/Mesh.cc 
	      ${SOURCE_DIR}/MeshStructure.cc 
	      ${SOURCE_DIR}/AdaptStationary.cc  
	      ${SOURCE_DIR}/AdaptInstationary.cc
	      ${SOURCE_DIR}/DOFVector.cc 
	      ${SOURCE_DIR}/Estimator.cc 
	      ${SOURCE_DIR}/ProblemInstat.cc 
	      ${SOURCE_DIR}/ProblemNonLin.cc 
	      ${SOURCE_DIR}/NonLinUpdater.cc 
	      ${SOURCE_DIR}/QPsiPhi.cc 
	      ${SOURCE_DIR}/BasisFunction.cc 
	      ${SOURCE_DIR}/Boundary.cc 
	      ${SOURCE_DIR}/CoarseningManager.cc 
	      ${SOURCE_DIR}/CoarseningManager1d.cc 
	      ${SOURCE_DIR}/CoarseningManager2d.cc 
	      ${SOURCE_DIR}/CoarseningManager3d.cc 
	      ${SOURCE_DIR}/DOFAdmin.cc 
	      ${SOURCE_DIR}/DOFMatrix.cc 
	      ${SOURCE_DIR}/Element.cc 
	      ${SOURCE_DIR}/ElInfo1d.cc 
	      ${SOURCE_DIR}/ElInfo2d.cc 
	      ${SOURCE_DIR}/ElInfo3d.cc 
	      ${SOURCE_DIR}/FiniteElemSpace.cc 
	      ${SOURCE_DIR}/FixVec.cc 
	      ${SOURCE_DIR}/Global.cc 
	      ${SOURCE_DIR}/Lagrange.cc 
	      ${SOURCE_DIR}/Line.cc 
	      ${SOURCE_DIR}/MacroElement.cc 
	      ${SOURCE_DIR}/MacroWriter.cc 
	      ${SOURCE_DIR}/Parameters.cc 
	      ${SOURCE_DIR}/Parametric.cc 
	      ${SOURCE_DIR}/Quadrature.cc 
	      ${SOURCE_DIR}/RCNeighbourList.cc 
	      ${SOURCE_DIR}/RefinementManager.cc 
	      ${SOURCE_DIR}/RefinementManager1d.cc 
	      ${SOURCE_DIR}/RefinementManager2d.cc 
	      ${SOURCE_DIR}/RefinementManager3d.cc 
	      ${SOURCE_DIR}/Tetrahedron.cc 
	      ${SOURCE_DIR}/Traverse.cc 
	      ${SOURCE_DIR}/TraverseParallel.cc 
	      ${SOURCE_DIR}/Triangle.cc 
	      ${SOURCE_DIR}/TecPlotWriter.cc 
	      ${SOURCE_DIR}/ValueWriter.cc 
	      ${SOURCE_DIR}/VtkWriter.cc 
	      ${SOURCE_DIR}/PngWriter.cc 
	      ${SOURCE_DIR}/PovrayWriter.cc 
	      ${SOURCE_DIR}/DataCollector.cc 
	      ${SOURCE_DIR}/ScalableQuadrature.cc 
	      ${SOURCE_DIR}/SubElInfo.cc 
	      ${SOURCE_DIR}/parallel/InteriorBoundary.cc 
	      ${SOURCE_DIR}/ElementDofIterator.cc 
Naumann, Andreas's avatar
Naumann, Andreas committed
152
	      ${SOURCE_DIR}/Debug.cc
153
154
	      ${SOURCE_DIR}/ArhReader.cc
	      ${SOURCE_DIR}/ArhWriter.cc
155
156
157
              ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockStationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockMethod.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
158
159
	      )

160
if(ENABLE_PARALLEL_DOMAIN)
Naumann, Andreas's avatar
Naumann, Andreas committed
161
162
163
164
	find_package(MPI REQUIRED)
	INCLUDE (CMakeForceCompiler)	
	CMAKE_FORCE_C_COMPILER(mpicc "MPI C compiler")
	CMAKE_FORCE_CXX_COMPILER(mpiCC "MPI C++ compiler")
165
166
167
168
169
 
	add_custom_target(parmetis-lib ALL
			make
			WORKING_DIRECTORY ${LIB_DIR}/ParMetis-3.1
			)
Naumann, Andreas's avatar
Naumann, Andreas committed
170
	include_directories( ${LIB_DIR}/ParMetis-3.1)
171
        INSTALL(FILES ${LIB_DIR}/ParMetis-3.1/parmetis.h
172
173
174
		${LIB_DIR}/ParMetis-3.1/libparmetis.a
		${LIB_DIR}/ParMetis-3.1/libmetis.a
		DESTINATION lib/parmetis
175
	       )
176
	set(ENABLE_PARMETIS ON)
Naumann, Andreas's avatar
Naumann, Andreas committed
177

178
	find_package(PETSc REQUIRED)
Naumann, Andreas's avatar
Naumann, Andreas committed
179
180
	include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
	SET(PARALLEL_DOMAIN_AMDIS_SRC
181
                ${SOURCE_DIR}/parallel/ParMetisPartitioner.cc
182
		${SOURCE_DIR}/parallel/MeshDistributor.cc 
Naumann, Andreas's avatar
Naumann, Andreas committed
183
		${SOURCE_DIR}/parallel/StdMpi.cc
184
		${SOURCE_DIR}/parallel/ParallelDebug.cc
185
		${SOURCE_DIR}/parallel/MpiHelper.cc
186
187
		${SOURCE_DIR}/parallel/ElementObjectData.cc
		${SOURCE_DIR}/parallel/PetscSolver.cc)
Naumann, Andreas's avatar
Naumann, Andreas committed
188
189
190
191
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_DOMAIN_AMDIS=1")
endif(ENABLE_PARALLEL_DOMAIN)

if(ENABLE_OPENMP)
192
193
194
195
196
197
	find_package(OpenMP)
	if(OPENMP_FOUND)
		SET(COMPILEFLAGS "${COMPILEFLAGS} ${OpenMP_CXX_FLAGS}")
	else()
		message(WARNING "your compiler seems support openmp")
	endif()
Naumann, Andreas's avatar
Naumann, Andreas committed
198
199
200
201
202
endif(ENABLE_OPENMP)

if(ENABLE_UMFPACK)
	include_directories(${LIB_DIR}/UFconfig ${LIB_DIR}/AMD/Include ${LIB_DIR}/UMFPACK/Include)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK")
203
        FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/UMFPACK/Include/*.h")
204
205
	INSTALL(FILES ${UMFPACK_HEADERS} 
		DESTINATION include/amdis/umfpack/)
206

207
	FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/AMD/Include/*.h")
208
209
	INSTALL(FILES ${UMFPACK_HEADERS} 
		DESTINATION include/amdis/amd/)
210

211
	FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/*.h")
212
213
	INSTALL(FILES ${HEADERS} 
		DESTINATION include/amdis/ufconfig/)
214

215
	FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/xerbla/*.h")
216
217
	INSTALL(FILES ${HEADERS} 
		DESTINATION include/amdis/ufconfig/xerbla)
218

219
220
221
222
223
224
225
226
227
228
229
230
#add some rules to build the umfpack and amd libs
#	message("adding command for libumfpack:${CMAKE_CURRENT_SOURCE_DIR}/${LIB_DIR}/UMFPACK/Lib/libumfpack.a ")
	add_custom_target(umfpack-lib ALL
			make
			WORKING_DIRECTORY ${LIB_DIR}/UMFPACK
			)

	add_custom_target(amd-lib ALL
			 make
			WORKING_DIRECTORY ${LIB_DIR}/AMD
			)

231
232
233
234
235
	INSTALL(FILES ${LIB_DIR}/UMFPACK/Lib/libumfpack.a 
		DESTINATION lib/amdis/umfpack/)
	INSTALL(FILES ${LIB_DIR}/AMD/Lib/libamd.a 
		DESTINATION lib/amdis/amd/)
	SET(RPM_DEPEND_STR "blas")
Naumann, Andreas's avatar
Naumann, Andreas committed
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
endif(ENABLE_UMFPACK)

if(ENABLE_MKL)
	include_directories(${MKL_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_MKL=1")
endif(ENABLE_MKL)

SET(COMPOSITE_SOURCE_DIR compositeFEM/src)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc 
		      ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc 
		      ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )

#mtl4 includes
251
include_directories(${MTL_DIR})
Naumann, Andreas's avatar
Naumann, Andreas committed
252
253
include_directories(${SOURCE_DIR})

254
add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
Naumann, Andreas's avatar
Naumann, Andreas committed
255
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
256
target_link_libraries(compositeFEM amdis)
Naumann, Andreas's avatar
Naumann, Andreas committed
257

258
259
260
if(WIN32)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -D_SCL_SECURE_NO_WARNINGS -D_CRT_SECURE_NO_WARNINGS")
endif(WIN32)
261
message("compileflags: ${COMPILEFLAGS}")
262
263
#SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
add_definitions(${COMPILEFLAGS})
Naumann, Andreas's avatar
Naumann, Andreas committed
264
265
266
267
268
if(ENABLE_MARMOT)
	Message("please set marmotcc manually")
endif(ENABLE_MARMOT)

install(TARGETS amdis compositeFEM 
269
	LIBRARY DESTINATION lib/amdis/ )
270
271

FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.h")
272
273
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)
274
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.hh")
275
276
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)
277
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/parallel/*.h")
278
279
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/parallel/)
280
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/time/*.h")
281
282
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/time/)
283
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/itl/*.hpp")
284
285
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/itl)
286
287
288
289
290

configure_file(${AMDiS_BINARY_DIR}/AMDiSConfig.cmake.in
		${AMDiS_BINARY_DIR}/AMDiSConfig.cmake
		@ONLY
	      )
291
292
293
294
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSConfig.cmake 
	DESTINATION share/amdis/)
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSUse.cmake 
	DESTINATION share/amdis/)
Naumann, Andreas's avatar
Naumann, Andreas committed
295

296
297
#install mtl
INSTALL(DIRECTORY ${CMAKE_BINARY_DIR}/lib/mtl4/
298
299
300
301
302
303
	DESTINATION include/amdis/mtl4/
	FILES_MATCHING PATTERN "*.hpp"
	PATTERN ".svn" EXCLUDE
	PATTERN ".svn/*" EXCLUDE
	PATTERN "mtl4/libs" EXCLUDE
	PATTERN "mtl4/extern" EXCLUDE
304
       )
305
306

#PACKAGES
307
308
309
310
311
312
313
314
315
#let cmake look for the svn-version
find_package(Subversion)
if(Subversion_FOUND)
	Subversion_WC_INFO(${CMAKE_CURRENT_BINARY_DIR} mtlSubinfo)
	set(CurrentRevision ${mtlSubinfo_WC_REVISION})
#       message("current revision: ${mtlSubinfo_WC_REVISION}")
else(Subversion_FOUND)
	set(CurrentRevision "0")
endif(Subversion_FOUND)
Naumann, Andreas's avatar
Naumann, Andreas committed
316
set(CPACK_PACKAGE_NAME "AMDiS")
317
set(CPACK_PACKAGE_CONTACT "Andreas.Naumann@tu-dresden.de")
318
set(CPACK_PACKAGE_VERSION "0.9.${CurrentRevision}")
319
320
321
322
set(CPACK_GENERATOR "RPM" "DEB" "TGZ")
set(CPACK_INSTALL_PREFIX "/usr/")

set(CPACK_RPM_PACKAGE_REQUIRES "boost-devel >= 1.42, ${RPM_DEPEND_STR}")
Naumann, Andreas's avatar
Naumann, Andreas committed
323
set(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-dev (>= 1.42)")
324
include(CPack)
Naumann, Andreas's avatar
Naumann, Andreas committed
325
326
327
328
329
330
if(ENABLE_TESTS)
#ENABLE_TESTING()
#add_test(demo_test run_test.sh)

#add_test(demo_test ${CMAKE_CTEST_COMMAND} --build-and-test "${CMAKE_SOURCE_DIR}/test/demo_test" "${CMAKE_BINARY_DIR}/test/demo_test" --build-generator "${CMAKE_GENERATOR}" --build-makeprogram "${CMAKE_MAKE_PROGRAM}" "${CMAKE_BINARY_DIR}/test/demo_test")
endif(ENABLE_TESTS)