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Commit 0879bc18 authored by Praetorius, Simon's avatar Praetorius, Simon
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some baseproblems extended

parent f429edf0
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extensions/base_problems/CahnHilliard.cc
View file @ 0879bc18
......@@ -21,6 +21,7 @@
#include "HL_SignedDistTraverse.h"
#include "Recovery.h"
#include "GenericZeroOrderTerm.h"
using namespace AMDiS;
......@@ -153,53 +154,67 @@ void CahnHilliard<P>::fillOperators()
{
const FiniteElemSpace* feSpace = self::prob->self::getFeSpace();
int degree = feSpace->getBasisFcts()->getDegree();
DOFVector<double>* c = self::prob->getSolution()->getDOFVector(0);
DOFVector<double>* mu = self::prob->getSolution()->getDOFVector(1);
// c
Operator *opChMnew = new Operator(feSpace, feSpace);
opChMnew->addTerm(new Simple_ZOT);
addZOT(opChMnew, constant(1.0));
// opChMnew->addTerm(new Simple_ZOT);
Operator *opChMold = new Operator(feSpace, feSpace);
opChMold->addTerm(new VecAtQP_ZOT(self::prob->getSolution()->getDOFVector(0)));
addZOT(opChMold, valueOf(c));
// opChMold->addTerm(new VecAtQP_ZOT(self::prob->getSolution()->getDOFVector(0)));
// -nabla*(grad(c))
Operator *opChL = new Operator(feSpace, feSpace);
opChL->addTerm(new Simple_SOT);
addSOT(opChL, constant(1.0) );
// opChL->addTerm(new Simple_SOT);
// div(M(c)grad(mu)), with M(c)=gamma/4*(c^2-1)^2
Operator *opChLM = new Operator(feSpace, feSpace);
if (useMobility) {
if (doubleWell == 0)
opChLM->addTerm(new VecAtQP_SOT(
self::prob->getSolution()->getDOFVector(0),
new MobilityCH0(gamma, degree)));
addSOT(opChLM_, function_(MobilityCH0_(gamma), valueOf(c)) );
// opChLM->addTerm(new VecAtQP_SOT(
// self::prob->getSolution()->getDOFVector(0),
// new MobilityCH0(gamma, degree)));
else
opChLM->addTerm(new VecAtQP_SOT(
self::prob->getSolution()->getDOFVector(0),
new MobilityCH1(gamma, degree)));
addSOT(opChLM, function_(MobilityCH1_(gamma), valueOf(c)) );
// opChLM->addTerm(new VecAtQP_SOT(
// self::prob->getSolution()->getDOFVector(0),
// new MobilityCH1(gamma, degree)));
} else
opChLM->addTerm(new Simple_SOT(gamma));
addSOT(opChLM, constant(gamma) );
// opChLM->addTerm(new Simple_SOT(gamma));
// -2*c_old^3 + 3/2*c_old^2
Operator *opChMPowExpl = new Operator(feSpace, feSpace);
opChMPowExpl->addTerm(new VecAtQP_ZOT(
self::prob->getSolution()->getDOFVector(0),
new AMDiS::Pow<3>(-2.0, 3*degree)));
addZOT(opChMPowExpl, -2.0 * pow<3>(valueOf(c)));
// opChMPowExpl->addTerm(new VecAtQP_ZOT(
// self::prob->getSolution()->getDOFVector(0),
// new AMDiS::Pow<3>(-2.0, 3*degree)));
if (doubleWell == 0) {
opChMPowExpl->addTerm(new VecAtQP_ZOT(
self::prob->getSolution()->getDOFVector(0),
new AMDiS::Pow<2>(3.0/2.0, 2*degree)));
addZOT(opChMPowExpl, (3.0/2.0) * pow<2>(valueOf(c)));
// opChMPowExpl->addTerm(new VecAtQP_ZOT(
// self::prob->getSolution()->getDOFVector(0),
// new AMDiS::Pow<2>(3.0/2.0, 2*degree)));
}
// -3*c_old^2 * c
Operator *opChMPowImpl = new Operator(feSpace, feSpace);
opChMPowImpl->addTerm(new VecAtQP_ZOT(
self::prob->getSolution()->getDOFVector(0),
new AMDiS::Pow<2>(-3.0, 2*degree)));
addZOT(opChMPowImpl, -3.0 * pow<2>(valueOf(c)));
// opChMPowImpl->addTerm(new VecAtQP_ZOT(
// self::prob->getSolution()->getDOFVector(0),
// new AMDiS::Pow<2>(-3.0, 2*degree)));
if (doubleWell == 0) {
opChMPowImpl->addTerm(new VecAtQP_ZOT(
self::prob->getSolution()->getDOFVector(0),
NULL, 3.0));
addZOT(opChMPowImpl, 3.0 * valueOf(c) - 0.5);
// opChMPowImpl->addTerm(new VecAtQP_ZOT(
// self::prob->getSolution()->getDOFVector(0),
// NULL, 3.0));
opChMPowImpl->addTerm(new Simple_ZOT(-0.5));
} else {
opChMPowImpl->addZeroOrderTerm(new Simple_ZOT(1.0));
addZOT(opChMPowImpl, constant(1.0));
// opChMPowImpl->addZeroOrderTerm(new Simple_ZOT(1.0));
}
// mu + eps^2*laplace(c) + c - 3*(c_old^2)*c = -2*c_old^3 [+ BC]
......
extensions/base_problems/CahnHilliard.h
View file @ 0879bc18
......@@ -21,6 +21,7 @@
#include "AMDiS.h"
#include "BaseProblem.h"
#include "chns.h"
#include "GenericOperatorTerm.h"
namespace detail {
......@@ -64,6 +65,51 @@ namespace detail {
double epsSqr;
double minusEpsSqr;
};
class MobilityCH0_ : public FunctorBase //: public AbstractFunction<double,double>
{
public:
MobilityCH0_(double gamma_=1.0) :
gamma(gamma_),
delta(1.e-6) { }
typedef double value_type;
int getDegree(int d0) const { return d0 * 4; }
double operator()(const double &ch) const
{
double phase = std::max(0.0, std::min(1.0, ch));
double mobility = 0.25*sqr(phase)*sqr(phase-1.0);
return gamma * std::max(mobility, delta);
}
protected:
double gamma;
double delta;
};
class MobilityCH1_ : public FunctorBase // : public AbstractFunction<double,double>
{
public:
MobilityCH1_(double gamma_=1.0) :
gamma(gamma_),
delta(1.e-6) { }
typedef double value_type;
int getDegree(int d0) const { return d0 * 4; }
double operator()(const double &ch) const
{
double phase = std::max(-1.0, std::min(1.0, ch));
double mobility = 0.25*sqr(sqr(phase)-1.0);
return gamma * std::max(mobility, delta);
}
protected:
double gamma;
double delta;
};
} // end namespace detail
......
extensions/base_problems/CahnHilliard.hh
View file @ 0879bc18
......@@ -153,55 +153,43 @@ void CahnHilliard<P>::fillOperators()
{
const FiniteElemSpace* feSpace = self::prob->getFeSpace();
int degree = feSpace->getBasisFcts()->getDegree();
DOFVector<double>* c = self::prob->getSolution()->getDOFVector(0);
DOFVector<double>* mu = self::prob->getSolution()->getDOFVector(1);
// c
Operator *opChMnew = new Operator(feSpace, feSpace);
opChMnew->addTerm(new Simple_ZOT);
addZOT(opChMnew, constant(1.0));
Operator *opChMold = new Operator(feSpace, feSpace);
opChMold->addTerm(new VecAtQP_ZOT(self::prob->getSolution()->getDOFVector(0)));
addZOT(opChMold, valueOf(c));
// -nabla*(grad(c))
Operator *opChL = new Operator(feSpace, feSpace);
opChL->addTerm(new Simple_SOT);
addSOT(opChL, constant(1.0) );
// div(M(c)grad(mu)), with M(c)=gamma/4*(c^2-1)^2
Operator *opChLM = new Operator(feSpace, feSpace);
if (useMobility) {
if (doubleWell == 0)
opChLM->addTerm(new VecAtQP_SOT(
self::prob->getSolution()->getDOFVector(0),
new MobilityCH0(gamma, degree)));
addSOT(opChLM, function_(MobilityCH0_(gamma), valueOf(c)) );
else
opChLM->addTerm(new VecAtQP_SOT(
self::prob->getSolution()->getDOFVector(0),
new MobilityCH1(gamma, degree)));
addSOT(opChLM, function_(MobilityCH1_(gamma), valueOf(c)) );
} else
opChLM->addTerm(new Simple_SOT(gamma));
addSOT(opChLM, constant(gamma) );
// -2*c_old^3 + 3/2*c_old^2
Operator *opChMPowExpl = new Operator(feSpace, feSpace);
opChMPowExpl->addTerm(new VecAtQP_ZOT(
self::prob->getSolution()->getDOFVector(0),
new AMDiS::Pow<3>(-2.0, 3*degree)));
if (doubleWell == 0) {
opChMPowExpl->addTerm(new VecAtQP_ZOT(
self::prob->getSolution()->getDOFVector(0),
new AMDiS::Pow<2>(3.0/2.0, 2*degree)));
}
addZOT(opChMPowExpl, -2.0 * pow<3>(valueOf(c)));
if (doubleWell == 0)
addZOT(opChMPowExpl, (3.0/2.0) * pow<2>(valueOf(c)));
// -3*c_old^2 * c
Operator *opChMPowImpl = new Operator(feSpace, feSpace);
opChMPowImpl->addTerm(new VecAtQP_ZOT(
self::prob->getSolution()->getDOFVector(0),
new AMDiS::Pow<2>(-3.0, 2*degree)));
if (doubleWell == 0) {
opChMPowImpl->addTerm(new VecAtQP_ZOT(
self::prob->getSolution()->getDOFVector(0),
NULL, 3.0));
opChMPowImpl->addTerm(new Simple_ZOT(-0.5));
} else {
opChMPowImpl->addZeroOrderTerm(new Simple_ZOT(1.0));
}
addZOT(opChMPowImpl, -3.0 * pow<2>(valueOf(c)));
if (doubleWell == 0)
addZOT(opChMPowImpl, 3.0 * valueOf(c) - 0.5);
else
addZOT(opChMPowImpl, constant(1.0));
// mu + eps^2*laplace(c) + c - 3*(c_old^2)*c = -2*c_old^3 [+ BC]
// ----------------------------------------------------------------------
self::prob->addMatrixOperator(*opChMPowImpl,0,0); /// < -3*phi*c*c_old^2 , psi >
......@@ -217,7 +205,6 @@ void CahnHilliard<P>::fillOperators()
self::prob->addMatrixOperator(*opChLM,1,1); /// < phi*grad(mu) , grad(psi) >
// . . . vectorOperators . . . . . . . . . . . . . . .
self::prob->addVectorOperator(*opChMold,1, self::getInvTau()); /// < phi*c^old/tau , psi >
}
......
extensions/base_problems/CouplingBaseProblem.h
View file @ 0879bc18
......@@ -47,8 +47,8 @@ public:
~CouplingBaseProblem() { }
void initialize(Flag initFlag,
ProblemStatSeq *adoptProblem = NULL,
Flag adoptFlag = INIT_NOTHING) override
ProblemStatSeq *adoptProblem = NULL,
Flag adoptFlag = INIT_NOTHING) override
{
for (size_t i = 0; i < baseProblems.size(); i++) {
for (size_t j = 0; j < baseProblems[i]->getNumProblems(); j++)
......
extensions/base_problems/CouplingBaseProblem2.h
View file @ 0879bc18
......@@ -66,6 +66,30 @@ namespace detail {
/// Functor for generic loops. Method fillBoundaryConditions() is called for each element in a sequence.
struct FillBoundaryConditions { template<typename B> static void call(B& b) { b.fillBoundaryConditions(); } };
struct FindProblem {
template<typename BaseProblemType, typename ProblemType>
static void call(BaseProblemType& baseProblem, const std::string& name, ProblemType& prob) {
if (baseProblem.getName() == name)
prob = baseProblem.getProblem();
}
};
struct FindBaseProblem {
template<typename BaseProblemType, typename ProblemType>
static void call(BaseProblemType& baseProblem, const std::string& name, ProblemType& prob) {
typedef typename boost::mpl::if_<typename boost::is_same<BaseProblemType, ProblemType>::type,
boost::mpl::int_<true>,
boost::mpl::bool_<false> >::type assign;
call(baseProblem, name, prob, assign());
}
template<typename BaseProblemType>
static void call(BaseProblemType& baseProblem, const std::string& name, BaseProblemType& prob, boost::mpl::int_<true>) {
if (baseProblem.getName() == name)
prob = &baseProblem;
}
template<typename BaseProblemType, typename ProblemType>
static void call(BaseProblemType& baseProblem, const std::string& name, BaseProblemType& prob, boost::mpl::int_<false>) {}
};
} // end namespace detail
/**
......@@ -156,7 +180,7 @@ public:
template<int i>
DOFVector<double> *getSolution(int j)
{ FUNCNAME("CouplingBaseProblem::getSolution<i>(j)");
BOOST_STATIC_ASSERT_MSG(0 <= i && i < _LENGTH_<BaseProblemsTupleType>::value , "BaseProblem-index out of range");
BOOST_STATIC_ASSERT_MSG(0 <= i && i < _LENGTH_<BaseProblemsTupleType>::value , "********** ERROR: BaseProblem-index out of range **********");
TEST_EXIT(0 <= j && j <= _GET_<i>(baseProblems).getNumComponents())("Indices out of range!\n");
return _GET_<i>(baseProblems).getSolution()->getDOFVector(j);
......@@ -167,13 +191,35 @@ public:
template<int i>
inline const FiniteElemSpace* getFeSpace(int j=0)
{ FUNCNAME("CouplingBaseProblem::getFeSpace<i>(j)");
BOOST_STATIC_ASSERT_MSG(0 <= i && i < _LENGTH_<BaseProblemsTupleType>::value , "BaseProblem index out of range");
BOOST_STATIC_ASSERT_MSG(0 <= i && i < _LENGTH_<BaseProblemsTupleType>::value , "********** ERROR: BaseProblem index out of range **********");
TEST_EXIT(0 <= j && j <= _GET_<i>(baseProblems).getNumComponents())("Indices out of range!\n");
return _GET_<i>(baseProblems).getFeSpace(j);
}
std::string getName() { return name; }
template<typename BaseProblemType>
BaseProblemType *getBaseProblem(std::string name_)
{
BaseProblemType *prob = NULL;
tools::FOR_EACH< detail::FindBaseProblem >::loop1(baseProblems, name_, prob);
if (prob)
return prob;
else
throw(std::runtime_error("problem with given name '" + name_ + "' does not exist"));
}
ProblemType *getProblem(std::string name_)
{
ProblemType *prob = NULL;
tools::FOR_EACH< detail::FindProblem >::loop1(baseProblems, name_, prob);
if (prob)
return prob;
else
throw(std::runtime_error("problem with given name '" + name_ + "' does not exist"));
}
protected:
BaseProblemsTupleType baseProblems;
......
extensions/base_problems/CouplingBaseProblem2_cxx11.h
View file @ 0879bc18
......@@ -68,6 +68,32 @@ namespace detail {
static void call(BaseProblemType& baseProblem) { baseProblem.fillBoundaryConditions(); }
};
struct FindProblem {
template<typename BaseProblemType, typename ProblemType>
static void call(BaseProblemType& baseProblem, const std::string& name, ProblemType& prob) {
if (baseProblem.getName() == name)
prob = baseProblem.getProblem();
}
};
struct FindBaseProblem {
template<typename BaseProblemType, typename ProblemType>
static void call(BaseProblemType& baseProblem, const std::string& name, ProblemType*& prob) {
typedef typename boost::mpl::if_<typename boost::is_same<BaseProblemType, ProblemType>::type,
boost::mpl::bool_<true>,
boost::mpl::bool_<false> >::type assign;
call(baseProblem, name, prob, assign());
}
template<typename BaseProblemType, typename ProblemType>
static void call(BaseProblemType& baseProblem, const std::string& name, ProblemType*& prob, boost::mpl::bool_<true>) {
if (baseProblem.getName() == name)
prob = &baseProblem;
}
template<typename BaseProblemType, typename ProblemType>
static void call(BaseProblemType& baseProblem, const std::string& name, ProblemType*& prob, boost::mpl::bool_<false>) {}
};
} // end namespace detail
/**
......@@ -151,7 +177,7 @@ public:
template<int i>
DOFVector<double> *getSolution(int j)
{ FUNCNAME("CouplingBaseProblem::getSolution<i>(j)");
BOOST_STATIC_ASSERT_MSG(0 <= i && i < _LENGTH_<BaseProblemsTupleType>::value , "BaseProblem-index out of range");
BOOST_STATIC_ASSERT_MSG(0 <= i && i < _LENGTH_<BaseProblemsTupleType>::value , "********** ERROR: BaseProblem-index out of range **********");
TEST_EXIT(0 <= j && j <= _GET_<i>(baseProblems).getNumComponents())("Indices out of range!\n");
return _GET_<i>(baseProblems).getSolution()->getDOFVector(j);
......@@ -162,13 +188,35 @@ public:
template<int i>
inline const FiniteElemSpace* getFeSpace(int j=0)
{ FUNCNAME("CouplingBaseProblem::getFeSpace<i>(j)");
BOOST_STATIC_ASSERT_MSG(0 <= i && i < _LENGTH_<BaseProblemsTupleType>::value , "BaseProblem index out of range");
BOOST_STATIC_ASSERT_MSG(0 <= i && i < _LENGTH_<BaseProblemsTupleType>::value , "********** ERROR: BaseProblem index out of range **********");
TEST_EXIT(0 <= j && j <= _GET_<i>(baseProblems).getNumComponents())("Indices out of range!\n");
return _GET_<i>(baseProblems).getFeSpace(j);
}
std::string getName() { return name; }
ProblemType *getProblem(std::string name_)
{
ProblemType *prob = NULL;
tools::FOR_EACH< detail::FindProblem >::loop1(baseProblems, name_, prob);
if (prob)
return prob;
else
throw(std::runtime_error("problem with given name '" + name_ + "' does not exist"));
}
template<typename BaseProblemType>
BaseProblemType *getBaseProblem(std::string name_)
{
BaseProblemType *prob = NULL;
tools::FOR_EACH< detail::FindBaseProblem >::loop1(baseProblems, name_, prob);
if (prob)
return prob;
else
throw(std::runtime_error("problem with given name '" + name_ + "' does not exist"));
}
protected:
BaseProblemsTupleType baseProblems;
......
extensions/base_problems/NavierStokesPhase_TaylorHood.h
View file @ 0879bc18
......@@ -19,6 +19,7 @@
#define NAVIER_STOKES_PHASE_TAYLOR_HOOD_H
#include "NavierStokes_TaylorHood.h"
#include "ExtendedProblemStat.h"
using namespace AMDiS;
......@@ -29,11 +30,11 @@ using namespace AMDiS;
* dt(phase*u_j) + phase*u*grad(u_j) = phase*d_j(p) - nu*div(phase*grad(u_j)) - beta/eps^alpha (1-phase)*(u_j - g_j); j=1...d
* div(phase*u) = grad(phase)*g
*/
class NavierStokesPhase_TaylorHood : public NavierStokes_TaylorHood
class NavierStokesPhase_TaylorHood : public ::detail::NavierStokes_TaylorHood<ExtendedProblemStat>
{
public: // typedefs
typedef NavierStokes_TaylorHood super;
typedef ::detail::NavierStokes_TaylorHood<ExtendedProblemStat> super;
public: // methods
......
extensions/base_problems/NavierStokes_TH_MultiPhase.h
View file @ 0879bc18
......@@ -19,147 +19,158 @@
#include "NavierStokes_TaylorHood.h"
namespace detail {
using namespace AMDiS;
/** \ingroup NavierStokes_TaylorHood
* \brief
* Navier-Stokes multi-phase problem, using Taylor Hood elements
* Standard implementation for two phases, but can be extended to
* many more, by defining the multiPhase variable and overloading
* the initTimestep, where densityPhase and viscosityPhase are defined
* depending on the phases
*/
class NavierStokes_TH_MultiPhase : public NavierStokes_TaylorHood
{
public: // typedefs
/** \ingroup NavierStokes_TaylorHood
* \brief
* Navier-Stokes multi-phase problem, using Taylor Hood elements
* Standard implementation for two phases, but can be extended to
* many more, by defining the multiPhase variable and overloading
* the initTimestep, where densityPhase and viscosityPhase are defined
* depending on the phases
*/
template<typename ProblemType>
class NavierStokes_TH_MultiPhase : public NavierStokes_TaylorHood<ProblemType>
{
public: // typedefs
typedef NavierStokes_TaylorHood super;
typedef NavierStokes_TaylorHood<ProblemType> super;
typedef NavierStokes_TH_MultiPhase<ProblemType> self;
public: // methods
public: // methods
NavierStokes_TH_MultiPhase(const std::string &name_, bool createProblem = true);
NavierStokes_TH_MultiPhase(const std::string &name_, bool createProblem = true);
/// deletes multiPhase, viscosityPhase and densityPhase
~NavierStokes_TH_MultiPhase();
/// deletes multiPhase, viscosityPhase and densityPhase
~NavierStokes_TH_MultiPhase();
/** definition of constant multiPhase and const
* viscosity/density DOFVectors,
* initTimeInterface of super
**/
void initData() override;
/** definition of constant multiPhase and const
* viscosity/density DOFVectors,
* initTimeInterface of super
**/
void initData() override;
/** initTimestep of super and
* initialization of densityPhase and viscosityPhase
**/
void initTimestep(AdaptInfo *adaptInfo) override;
/** initTimestep of super and
* initialization of densityPhase and viscosityPhase
**/
void initTimestep(AdaptInfo *adaptInfo) override;
/** pointer to the multiPhase DOFVector, that
* indicates the different phases. Will be initialized
* in \ref initTimeInterface with const 1
**/
void setMultiPhase(DOFVector<double>* p) { multiPhase=p; }
/** pointer to the multiPhase DOFVector, that
* indicates the different phases. Will be initialized
* in \ref initTimeInterface with const 1
**/
void setMultiPhase(DOFVector<double>* p) { multiPhase=p; }
void fillOperators() override;
void fillOperators() override;
void addLaplaceTerm(int i) override;
// get-methods
DOFVector<double>* getViscosityPhase()
{
return viscosityPhase;
}
DOFVector<double>* getDensityPhase()
{
return densityPhase;
}
double getViscosity(int i=0)
{
if (i == 0)
return viscosity1;
else
return viscosity2;
}
double getDensity(int i=0)
{
if (i == 0)
return density1;
else
return density2;
}
void addLaplaceTerm(int i) override;
// get-methods
DOFVector<double>* getViscosityPhase()
{
return viscosityPhase;
}
DOFVector<double>* getDensityPhase()
{
return densityPhase;
}
double getViscosity(int i=0)
{
if (i == 0)
return viscosity1;
else
return viscosity2;
}
double getDensity(int i=0)
{
if (i == 0)
return density1;
else
return density2;
}
protected: // variables
///viscosity of phase 1
double viscosity1;
///viscosity of phase 2
double viscosity2;
///density of phase 1
double density1;
///density of phase 2
double density2;
int phaseFieldType;
protected: // variables
/// phase dependent density