Commit 1efe388f authored by Thomas Witkowski's avatar Thomas Witkowski
Browse files

Work on Makefiles.

parent 2c1294eb
SUBDIRS = lib bin
EXTRA_DIST = demo
SUBDIRS = src lib
......@@ -142,6 +142,7 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
PETSC_DIR = @PETSC_DIR@
RANLIB = @RANLIB@
SED = @SED@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
......@@ -193,8 +194,7 @@ sbindir = @sbindir@
sharedstatedir = @sharedstatedir@
sysconfdir = @sysconfdir@
target_alias = @target_alias@
SUBDIRS = lib bin
EXTRA_DIST = demo
SUBDIRS = src lib
all: all-recursive
.SUFFIXES:
......@@ -418,7 +418,7 @@ distdir: $(DISTFILES)
|| exit 1; \
fi; \
done
-find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
-find $(distdir) -type d ! -perm -755 -exec chmod a+rwx,go+rx {} \; -o \
! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
! -type d ! -perm -400 -exec chmod a+r {} \; -o \
! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \
......
......@@ -1578,10 +1578,27 @@ linux*)
# before this can be enabled.
hardcode_into_libs=yes
# find out which ABI we are using
libsuff=
case "$host_cpu" in
x86_64*|s390x*|powerpc64*)
echo '[#]line __oline__ "configure"' > conftest.$ac_ext
if AC_TRY_EVAL(ac_compile); then
case `/usr/bin/file conftest.$ac_objext` in
*64-bit*)
libsuff=64
sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
;;
esac
fi
rm -rf conftest*
;;
esac
# Append ld.so.conf contents to the search path
if test -f /etc/ld.so.conf; then
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
fi
# We used to test for /lib/ld.so.1 and disable shared libraries on
......@@ -4288,6 +4305,9 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1)
# Is the compiler the GNU C compiler?
with_gcc=$_LT_AC_TAGVAR(GCC, $1)
gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
gcc_ver=\`gcc -dumpversion\`
# An ERE matcher.
EGREP=$lt_EGREP
......@@ -4421,11 +4441,11 @@ striplib=$lt_striplib
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1)
predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1)
postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -4437,7 +4457,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1)
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1)
compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method=$lt_deplibs_check_method
......@@ -4517,7 +4537,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1)
# Compile-time system search path for libraries
sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
......@@ -6353,6 +6373,7 @@ do
done
done
done
IFS=$as_save_IFS
lt_ac_max=0
lt_ac_count=0
# Add /usr/xpg4/bin/sed as it is typically found on Solaris
......@@ -6385,6 +6406,7 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do
done
])
SED=$lt_cv_path_SED
AC_SUBST([SED])
AC_MSG_RESULT([$SED])
])
......
lib_LTLIBRARIES = libamdis.la libcompositeFEM.la
SOURCE_DIR = ../src
LIB_DIR = ../lib
PARALLEL_DIR = $(SOURCE_DIR)
PARMETIS_DIR = ../lib/ParMetis-3.1
AMDIS_INCLUDES = -I$(SOURCE_DIR)
libamdis_la_CXXFLAGS =
PARALLEL_AMDIS_SOURCES =
PARALLEL_INCLUDES =
if USE_PARALLEL_DOMAIN_AMDIS
PARALLEL_AMDIS_SOURCES += \
$(SOURCE_DIR)/parallel/StdMpi.h $(SOURCE_DIR)/parallel/StdMpi.cc \
$(SOURCE_DIR)/parallel/ParMetisPartitioner.h $(SOURCE_DIR)/parallel/ParMetisPartitioner.cc \
$(SOURCE_DIR)/parallel/ZoltanPartitioner.h $(SOURCE_DIR)/parallel/ZoltanPartitioner.cc \
$(SOURCE_DIR)/parallel/MeshDistributor.h $(SOURCE_DIR)/parallel/MeshDistributor.cc \
$(SOURCE_DIR)/parallel/MeshPartitioner.h $(SOURCE_DIR)/parallel/MeshPartitioner.cc \
$(SOURCE_DIR)/parallel/MeshManipulation.h $(SOURCE_DIR)/parallel/MeshManipulation.cc \
$(SOURCE_DIR)/parallel/ParallelDebug.h $(SOURCE_DIR)/parallel/ParallelDebug.cc \
$(SOURCE_DIR)/parallel/ParallelProblemStatBase.h \
$(SOURCE_DIR)/parallel/ParallelProblemStatBase.cc \
$(SOURCE_DIR)/parallel/PetscSolver.h $(SOURCE_DIR)/parallel/PetscSolver.cc \
$(SOURCE_DIR)/parallel/MpiHelper.h $(SOURCE_DIR)/parallel/MpiHelper.cc \
$(SOURCE_DIR)/parallel/ElementObjectData.h $(SOURCE_DIR)/parallel/ElementObjectData.cc
libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_DOMAIN_AMDIS=1
AMDIS_INCLUDES += -I$(PARMETIS_DIR)
AMDIS_INCLUDES += -I$(PETSC_DIR)/include -I$(PETSC_DIR)/$(PETSC_ARCH)/include
AMDIS_INCLUDES += -I$(LIB_DIR)/zoltan_build/include
endif
if ENABLE_UMFPACK
libamdis_la_CXXFLAGS += -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK
AMDIS_INCLUDES += -I$(LIB_DIR)/UFconfig \
-I$(LIB_DIR)/AMD/Include \
-I$(LIB_DIR)/UMFPACK/Include
endif
if ENABLE_MKL
libamdis_la_CXXFLAGS += -DHAVE_MKL=1 -I${MKL_INC}
endif
if ENABLE_DUNE
libamdis_la_CXXFLAGS += -DHAVE_DUNE=1
AMDIS_INCLUDES += -I$(DUNE_DIR)
endif
if ENABLE_BOOST
libamdis_la_CXXFLAGS += -DHAVE_BOOST=1
endif
TEMPLATE_INCLUDES = -I../lib/mtl4
INCLUDES = $(AMDIS_INCLUDES) $(PARALLEL_INCLUDES) $(TEMPLATE_INCLUDES)
if AMDIS_DEBUG
libamdis_la_CXXFLAGS += -g -O0 -Wall -DDEBUG=1 $(OPENMP_FLAG) $(INCLUDES) #-pedantic
else
libamdis_la_CXXFLAGS += -O3 -Wall -DDEBUG=0 -DNDEBUG $(OPENMP_FLAG) -ftemplate-depth-100 $(INCLUDES) #-pedantic
endif
libamdis_la_SOURCES = \
$(PARALLEL_AMDIS_SOURCES) \
$(SOURCE_DIR)/DOFIndexed.h $(SOURCE_DIR)/DOFIndexed.cc \
$(SOURCE_DIR)/io/GNUPlotWriter.h $(SOURCE_DIR)/io/GNUPlotWriter.cc \
$(SOURCE_DIR)/VertexVector.h $(SOURCE_DIR)/VertexVector.cc \
$(SOURCE_DIR)/PeriodicBC.h $(SOURCE_DIR)/PeriodicBC.cc \
$(SOURCE_DIR)/Recovery.h $(SOURCE_DIR)/Recovery.cc \
$(SOURCE_DIR)/RecoveryEstimator.h $(SOURCE_DIR)/RecoveryEstimator.cc \
$(SOURCE_DIR)/ResidualEstimator.h $(SOURCE_DIR)/ResidualEstimator.cc \
$(SOURCE_DIR)/Cholesky.h $(SOURCE_DIR)/Cholesky.cc \
$(SOURCE_DIR)/AdaptBase.h $(SOURCE_DIR)/AdaptBase.cc \
$(SOURCE_DIR)/ProblemIterationInterface.h \
$(SOURCE_DIR)/StandardProblemIteration.h $(SOURCE_DIR)/StandardProblemIteration.cc \
$(SOURCE_DIR)/ProblemScal.h $(SOURCE_DIR)/ProblemScal.cc \
$(SOURCE_DIR)/ProblemVec.h $(SOURCE_DIR)/ProblemVec.cc \
$(SOURCE_DIR)/ProblemVecDbg.h $(SOURCE_DIR)/ProblemVecDbg.cc \
$(SOURCE_DIR)/DualTraverse.h $(SOURCE_DIR)/DualTraverse.cc \
$(SOURCE_DIR)/ElementPartition_ED.h $(SOURCE_DIR)/SurfacePartition_ED.h \
$(SOURCE_DIR)/ElementData.h $(SOURCE_DIR)/ElementData.cc \
$(SOURCE_DIR)/ComponentTraverseInfo.h $(SOURCE_DIR)/ComponentTraverseInfo.cc \
$(SOURCE_DIR)/CreatorMap.h $(SOURCE_DIR)/CreatorMap.hh $(SOURCE_DIR)/CreatorMap.cc \
$(SOURCE_DIR)/CreatorInterface.h \
$(SOURCE_DIR)/ElementFunction.h \
$(SOURCE_DIR)/ProblemInterpolScal.h $(SOURCE_DIR)/ProblemInterpolScal.cc \
$(SOURCE_DIR)/ProblemInterpolVec.h $(SOURCE_DIR)/ProblemInterpolVec.cc \
$(SOURCE_DIR)/Serializable.h \
$(SOURCE_DIR)/Serializer.cc \
$(SOURCE_DIR)/BallProject.h \
$(SOURCE_DIR)/CylinderProject.h \
$(SOURCE_DIR)/io/MacroInfo.h $(SOURCE_DIR)/io/MacroInfo.cc \
$(SOURCE_DIR)/io/MacroReader.h $(SOURCE_DIR)/io/MacroReader.cc \
$(SOURCE_DIR)/io/ValueReader.h $(SOURCE_DIR)/io/ValueReader.cc \
$(SOURCE_DIR)/Projection.h $(SOURCE_DIR)/Projection.cc \
$(SOURCE_DIR)/SubAssembler.h $(SOURCE_DIR)/SubAssembler.cc \
$(SOURCE_DIR)/ZeroOrderAssembler.h $(SOURCE_DIR)/ZeroOrderAssembler.cc \
$(SOURCE_DIR)/FirstOrderAssembler.h $(SOURCE_DIR)/FirstOrderAssembler.cc \
$(SOURCE_DIR)/SecondOrderAssembler.h $(SOURCE_DIR)/SecondOrderAssembler.cc \
$(SOURCE_DIR)/Assembler.h $(SOURCE_DIR)/Assembler.cc \
$(SOURCE_DIR)/AdaptInfo.h $(SOURCE_DIR)/AdaptInfo.cc \
$(SOURCE_DIR)/Marker.h $(SOURCE_DIR)/Marker.cc \
$(SOURCE_DIR)/SystemVector.h \
$(SOURCE_DIR)/SurfaceQuadrature.h $(SOURCE_DIR)/SurfaceQuadrature.cc \
$(SOURCE_DIR)/LeafData.h $(SOURCE_DIR)/LeafData.cc \
$(SOURCE_DIR)/BoundaryManager.h $(SOURCE_DIR)/BoundaryManager.cc \
$(SOURCE_DIR)/BoundaryCondition.h \
$(SOURCE_DIR)/DirichletBC.h $(SOURCE_DIR)/DirichletBC.cc \
$(SOURCE_DIR)/RobinBC.h $(SOURCE_DIR)/RobinBC.cc \
$(SOURCE_DIR)/AbstractFunction.h \
$(SOURCE_DIR)/ProblemStatBase.h \
$(SOURCE_DIR)/DOFContainer.h \
$(SOURCE_DIR)/io/FileWriter.h $(SOURCE_DIR)/io/FileWriter.hh $(SOURCE_DIR)/io/FileWriter.cc \
$(SOURCE_DIR)/io/ElementFileWriter.h $(SOURCE_DIR)/io/ElementFileWriter.cc \
$(SOURCE_DIR)/ElInfo.cc \
$(SOURCE_DIR)/ElInfoStack.h $(SOURCE_DIR)/ElInfoStack.cc \
$(SOURCE_DIR)/OperatorTerm.h $(SOURCE_DIR)/OperatorTerm.cc \
$(SOURCE_DIR)/ZeroOrderTerm.h $(SOURCE_DIR)/ZeroOrderTerm.cc \
$(SOURCE_DIR)/FirstOrderTerm.h $(SOURCE_DIR)/FirstOrderTerm.cc \
$(SOURCE_DIR)/SecondOrderTerm.h $(SOURCE_DIR)/SecondOrderTerm.cc \
$(SOURCE_DIR)/Operator.h $(SOURCE_DIR)/Operator.cc \
$(SOURCE_DIR)/Mesh.cc \
$(SOURCE_DIR)/MeshStructure.h $(SOURCE_DIR)/MeshStructure.cc \
$(SOURCE_DIR)/MeshStructure_ED.h \
$(SOURCE_DIR)/AMDiS.h \
$(SOURCE_DIR)/AdaptStationary.h $(SOURCE_DIR)/AdaptStationary.cc \
$(SOURCE_DIR)/AdaptInstationary.h $(SOURCE_DIR)/AdaptInstationary.cc \
$(SOURCE_DIR)/QPsiPhi.h \
$(SOURCE_DIR)/BasisFunction.h \
$(SOURCE_DIR)/Boundary.h \
$(SOURCE_DIR)/ITL_Solver.h \
$(SOURCE_DIR)/CoarseningManager.h \
$(SOURCE_DIR)/CoarseningManager1d.h $(SOURCE_DIR)/CoarseningManager2d.h $(SOURCE_DIR)/CoarseningManager3d.h \
$(SOURCE_DIR)/DOFAdmin.h \
$(SOURCE_DIR)/DOFIterator.h \
$(SOURCE_DIR)/DOFMatrix.h \
$(SOURCE_DIR)/DOFVector.h $(SOURCE_DIR)/DOFVector.hh $(SOURCE_DIR)/DOFVector.cc \
$(SOURCE_DIR)/Element.h $(SOURCE_DIR)/ElementConnection.h \
$(SOURCE_DIR)/ElInfo.h $(SOURCE_DIR)/ElInfo1d.h $(SOURCE_DIR)/ElInfo2d.h $(SOURCE_DIR)/ElInfo3d.h \
$(SOURCE_DIR)/Error.h $(SOURCE_DIR)/Error.hh \
$(SOURCE_DIR)/Estimator.h $(SOURCE_DIR)/Estimator.cc \
$(SOURCE_DIR)/FiniteElemSpace.h \
$(SOURCE_DIR)/FixVec.h $(SOURCE_DIR)/FixVec.hh \
$(SOURCE_DIR)/FixVecConvert.h \
$(SOURCE_DIR)/Flag.h \
$(SOURCE_DIR)/Global.h \
$(SOURCE_DIR)/UmfPackSolver.h \ $(SOURCE_DIR)/UmfPackSolver.hh \
$(SOURCE_DIR)/Lagrange.h $(SOURCE_DIR)/Line.h \
$(SOURCE_DIR)/MacroElement.h $(SOURCE_DIR)/MacroWriter.h \
$(SOURCE_DIR)/Markings.h $(SOURCE_DIR)/Markings.hh \
$(SOURCE_DIR)/Mesh.h \
$(SOURCE_DIR)/Parameters.h \
$(SOURCE_DIR)/Parametric.h \
$(SOURCE_DIR)/Quadrature.h \
$(SOURCE_DIR)/RCNeighbourList.h \
$(SOURCE_DIRe)/RefinementManager.h \
$(SOURCE_DIR)/RefinementManager1d.h \
$(SOURCE_DIR)/RefinementManager2d.h \
$(SOURCE_DIR)/RefinementManager3d.h \
$(SOURCE_DIR)/Tetrahedron.h \
$(SOURCE_DIR)/Traverse.h \
$(SOURCE_DIR)/Triangle.h \
$(SOURCE_DIR)/NonLinSolver.h $(SOURCE_DIR)/NonLinSolver.hh \
$(SOURCE_DIR)/ProblemInstat.h $(SOURCE_DIR)/ProblemInstat.cc \
$(SOURCE_DIR)/ProblemTimeInterface.h \
$(SOURCE_DIR)/ProblemNonLin.h $(SOURCE_DIR)/ProblemNonLin.cc \
$(SOURCE_DIR)/NonLinUpdater.h $(SOURCE_DIR)/NonLinUpdater.cc \
$(SOURCE_DIR)/Newton.h $(SOURCE_DIR)/Newton.hh \
$(SOURCE_DIR)/NewtonFS.h $(SOURCE_DIR)/NewtonFS.hh \
$(SOURCE_DIR)/io/GridWriter.h $(SOURCE_DIR)/io/GridWriter.hh \
$(SOURCE_DIR)/io/ValueWriter.h \
$(SOURCE_DIR)/QPsiPhi.cc \
$(SOURCE_DIR)/BasisFunction.cc \
$(SOURCE_DIR)/Boundary.cc \
$(SOURCE_DIR)/CoarseningManager.cc \
$(SOURCE_DIR)/CoarseningManager1d.cc \
$(SOURCE_DIR)/CoarseningManager2d.cc \
$(SOURCE_DIR)/CoarseningManager3d.cc \
$(SOURCE_DIR)/DOFAdmin.cc \
$(SOURCE_DIR)/DOFMatrix.cc \
$(SOURCE_DIR)/Element.cc \
$(SOURCE_DIR)/ElInfo1d.cc \
$(SOURCE_DIR)/ElInfo2d.cc \
$(SOURCE_DIR)/ElInfo3d.cc \
$(SOURCE_DIR)/FiniteElemSpace.cc \
$(SOURCE_DIR)/FixVec.cc \
$(SOURCE_DIR)/Global.cc \
$(SOURCE_DIR)/Lagrange.cc \
$(SOURCE_DIR)/Line.cc \
$(SOURCE_DIR)/MacroElement.cc \
$(SOURCE_DIR)/io/MacroWriter.cc \
$(SOURCE_DIR)/Parameters.cc \
$(SOURCE_DIR)/Parametric.cc \
$(SOURCE_DIR)/Quadrature.cc \
$(SOURCE_DIR)/RCNeighbourList.cc \
$(SOURCE_DIR)/RefinementManager.cc \
$(SOURCE_DIR)/RefinementManager1d.cc \
$(SOURCE_DIR)/RefinementManager2d.cc \
$(SOURCE_DIR)/RefinementManager3d.cc \
$(SOURCE_DIR)/Tetrahedron.cc \
$(SOURCE_DIR)/Traverse.cc \
$(SOURCE_DIR)/TraverseParallel.h $(SOURCE_DIR)/TraverseParallel.cc \
$(SOURCE_DIR)/Triangle.cc \
$(SOURCE_DIR)/io/ValueWriter.cc \
$(SOURCE_DIR)/io/VtkWriter.h $(SOURCE_DIR)/io/VtkWriter.cc \
$(SOURCE_DIR)/io/DofWriter.h $(SOURCE_DIR)/io/DofWriter.cc \
$(SOURCE_DIR)/io/PngWriter.h $(SOURCE_DIR)/io/PngWriter.cc \
$(SOURCE_DIR)/io/PovrayWriter.h $(SOURCE_DIR)/io/PovrayWriter.cc \
$(SOURCE_DIR)/io/DataCollector.h $(SOURCE_DIR)/io/DataCollector.cc \
$(SOURCE_DIR)/ElementInfo.h \
$(SOURCE_DIR)/VertexInfo.h \
$(SOURCE_DIR)/PeriodicInfo.h \
$(SOURCE_DIR)/OpenMP.h \
$(SOURCE_DIR)/ScalableQuadrature.h $(SOURCE_DIR)/ScalableQuadrature.cc \
$(SOURCE_DIR)/SubElInfo.h $(SOURCE_DIR)/SubElInfo.cc \
$(SOURCE_DIR)/SolutionDataStorage.h $(SOURCE_DIR)/SolutionDataStorage.hh \
$(SOURCE_DIR)/ElementDofIteartor.h $(SOURCE_DIR)/ElementDofIterator.cc \
$(SOURCE_DIR)/parallel/InteriorBoundary.h $(SOURCE_DIR)/parallel/InteriorBoundary.cc \
$(SOURCE_DIR)/Debug.h $(SOURCE_DIR)/Debug.cc \
$(SOURCE_DIR)/io/ArhReader.h $(SOURCE_DIR)/io/ArhReader.cc \
$(SOURCE_DIR)/io/ArhWriter.h $(SOURCE_DIR)/io/ArhWriter.cc \
$(SOURCE_DIR)/time/RosenbrockAdaptInstationary.h $(SOURCE_DIR)/time/RosenbrockAdaptInstationary.cc \
$(SOURCE_DIR)/time/RosenbrockStationary.h $(SOURCE_DIR)/time/RosenbrockStationary.cc \
$(SOURCE_DIR)/time/RosenbrockMethod.h $(SOURCE_DIR)/time/RosenbrockMethod.cc
COMPOSITE_SOURCE_DIR = ../compositeFEM/src
libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)
libcompositeFEM_la_SOURCES = $(COMPOSITE_SOURCE_DIR)/CFE_Integration.h \
$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc \
$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.h \
$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.cc \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.h \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.cc \
$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.h \
$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.cc \
$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.h \
$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.cc \
$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.h \
$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.cc \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.h \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.cc \
$(COMPOSITE_SOURCE_DIR)/SubPolytope.h $(COMPOSITE_SOURCE_DIR)/SubPolytope.cc \
$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.h \
$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.cc \
$(COMPOSITE_SOURCE_DIR)/TranslateLsFct.h
......@@ -462,7 +462,7 @@ ac_includes_default="\
# include <unistd.h>
#endif"
 
ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_ZOLTAN_TRUE ENABLE_ZOLTAN_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS'
ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_ZOLTAN_TRUE ENABLE_ZOLTAN_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os SED EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS'
ac_subst_files=''
 
# Initialize some variables set by options.
......@@ -3977,6 +3977,7 @@ do
done
done
done
IFS=$as_save_IFS
lt_ac_max=0
lt_ac_count=0
# Add /usr/xpg4/bin/sed as it is typically found on Solaris
......@@ -4011,6 +4012,7 @@ done
fi
 
SED=$lt_cv_path_SED
echo "$as_me:$LINENO: result: $SED" >&5
echo "${ECHO_T}$SED" >&6
 
......@@ -4451,7 +4453,7 @@ ia64-*-hpux*)
;;
*-*-irix6*)
# Find out which ABI we are using.
echo '#line 4454 "configure"' > conftest.$ac_ext
echo '#line 4456 "configure"' > conftest.$ac_ext
if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
(eval $ac_compile) 2>&5
ac_status=$?
......@@ -5586,7 +5588,7 @@ fi
 
 
# Provide some information about the compiler.
echo "$as_me:5589:" \
echo "$as_me:5591:" \
"checking for Fortran 77 compiler version" >&5
ac_compiler=`set X $ac_compile; echo $2`
{ (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
......@@ -6649,11 +6651,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
(eval echo "\"\$as_me:6652: $lt_compile\"" >&5)
(eval echo "\"\$as_me:6654: $lt_compile\"" >&5)
(eval "$lt_compile" 2>conftest.err)
ac_status=$?
cat conftest.err >&5
echo "$as_me:6656: \$? = $ac_status" >&5
echo "$as_me:6658: \$? = $ac_status" >&5
if (exit $ac_status) && test -s "$ac_outfile"; then
# The compiler can only warn and ignore the option if not recognized
# So say no if there are warnings other than the usual output.
......@@ -6917,11 +6919,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
(eval echo "\"\$as_me:6920: $lt_compile\"" >&5)
(eval echo "\"\$as_me:6922: $lt_compile\"" >&5)
(eval "$lt_compile" 2>conftest.err)
ac_status=$?
cat conftest.err >&5
echo "$as_me:6924: \$? = $ac_status" >&5
echo "$as_me:6926: \$? = $ac_status" >&5
if (exit $ac_status) && test -s "$ac_outfile"; then
# The compiler can only warn and ignore the option if not recognized
# So say no if there are warnings other than the usual output.
......@@ -7021,11 +7023,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
(eval echo "\"\$as_me:7024: $lt_compile\"" >&5)
(eval echo "\"\$as_me:7026: $lt_compile\"" >&5)
(eval "$lt_compile" 2>out/conftest.err)
ac_status=$?
cat out/conftest.err >&5
echo "$as_me:7028: \$? = $ac_status" >&5
echo "$as_me:7030: \$? = $ac_status" >&5
if (exit $ac_status) && test -s out/conftest2.$ac_objext
then
# The compiler can only warn and ignore the option if not recognized
......@@ -8486,10 +8488,31 @@ linux*)
# before this can be enabled.
hardcode_into_libs=yes
 
# find out which ABI we are using
libsuff=
case "$host_cpu" in
x86_64*|s390x*|powerpc64*)
echo '#line 8495 "configure"' > conftest.$ac_ext
if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
(eval $ac_compile) 2>&5
ac_status=$?
echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; then
case `/usr/bin/file conftest.$ac_objext` in
*64-bit*)
libsuff=64
sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
;;
esac
fi
rm -rf conftest*
;;
esac
# Append ld.so.conf contents to the search path
if test -f /etc/ld.so.conf; then
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
fi
 
# We used to test for /lib/ld.so.1 and disable shared libraries on
......@@ -9366,7 +9389,7 @@ else
lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
lt_status=$lt_dlunknown
cat > conftest.$ac_ext <<EOF
#line 9369 "configure"
#line 9392 "configure"
#include "confdefs.h"
 
#if HAVE_DLFCN_H
......@@ -9466,7 +9489,7 @@ else
lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
lt_status=$lt_dlunknown
cat > conftest.$ac_ext <<EOF
#line 9469 "configure"
#line 9492 "configure"
#include "confdefs.h"
 
#if HAVE_DLFCN_H
......@@ -9797,6 +9820,9 @@ CC=$lt_compiler
# Is the compiler the GNU C compiler?
with_gcc=$GCC
 
gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
gcc_ver=\`gcc -dumpversion\`
# An ERE matcher.
EGREP=$lt_EGREP
 
......@@ -9930,11 +9956,11 @@ striplib=$lt_striplib
 
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=$lt_predep_objects
predep_objects=\`echo $lt_predep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=$lt_postdep_objects
postdep_objects=\`echo $lt_postdep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -9946,7 +9972,7 @@ postdeps=$lt_postdeps
 
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=$lt_compiler_lib_search_path
compiler_lib_search_path=\`echo $lt_compiler_lib_search_path | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
# Method to check whether dependent libraries are shared objects.
deplibs_check_method=$lt_deplibs_check_method
......@@ -10026,7 +10052,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
link_all_deplibs=$link_all_deplibs
 
# Compile-time system search path for libraries
sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
......@@ -11806,11 +11832,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
(eval echo "\"\$as_me:11809: $lt_compile\"" >&5)
(eval echo "\"\$as_me:11835: $lt_compile\"" >&5)
(eval "$lt_compile" 2>conftest.err)
ac_status=$?
cat conftest.err >&5
echo "$as_me:11813: \$? = $ac_status" >&5
echo "$as_me:11839: \$? = $ac_status" >&5
if (exit $ac_status) && test -s "$ac_outfile"; then
# The compiler can only warn and ignore the option if not recognized
# So say no if there are warnings other than the usual output.
......@@ -11910,11 +11936,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
(eval echo "\"\$as_me:11913: $lt_compile\"" >&5)
(eval echo "\"\$as_me:11939: $lt_compile\"" >&5)
(eval "$lt_compile" 2>out/conftest.err)
ac_status=$?
cat out/conftest.err >&5
echo "$as_me:11917: \$? = $ac_status" >&5
echo "$as_me:11943: \$? = $ac_status" >&5
if (exit $ac_status) && test -s out/conftest2.$ac_objext
then
# The compiler can only warn and ignore the option if not recognized
......@@ -12442,10 +12468,31 @@ linux*)
# before this can be enabled.
hardcode_into_libs=yes
 
# find out which ABI we are using
libsuff=
case "$host_cpu" in
x86_64*|s390x*|powerpc64*)
echo '#line 12475 "configure"' > conftest.$ac_ext
if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
(eval $ac_compile) 2>&5
ac_status=$?
echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; then
case `/usr/bin/file conftest.$ac_objext` in
*64-bit*)
libsuff=64
sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
;;
esac
fi
rm -rf conftest*
;;
esac
# Append ld.so.conf contents to the search path
if test -f /etc/ld.so.conf; then
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
fi
 
# We used to test for /lib/ld.so.1 and disable shared libraries on
......@@ -12829,6 +12876,9 @@ CC=$lt_compiler_CXX
# Is the compiler the GNU C compiler?
with_gcc=$GCC_CXX
 
gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
gcc_ver=\`gcc -dumpversion\`
# An ERE matcher.
EGREP=$lt_EGREP
 
......@@ -12962,11 +13012,11 @@ striplib=$lt_striplib
 
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=$lt_predep_objects_CXX
predep_objects=\`echo $lt_predep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=$lt_postdep_objects_CXX
postdep_objects=\`echo $lt_postdep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -12978,7 +13028,7 @@ postdeps=$lt_postdeps_CXX
 
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=$lt_compiler_lib_search_path_CXX
compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
# Method to check whether dependent libraries are shared objects.
deplibs_check_method=$lt_deplibs_check_method
......@@ -13058,7 +13108,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
link_all_deplibs=$link_all_deplibs_CXX
 
# Compile-time system search path for libraries
sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
......@@ -13480,11 +13530,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
(eval echo "\"\$as_me:13483: $lt_compile\"" >&5)
(eval echo "\"\$as_me:13533: $lt_compile\"" >&5)
(eval "$lt_compile" 2>conftest.err)
ac_status=$?
cat conftest.err >&5