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Commit 3222f37e authored by Nestler, Michael's avatar Nestler, Michael
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Anpassung in Tetrahedron.cc in getHigherOrderDofs 

Quadratische Ansatzfunktionen erste Tests bestanden

In ParallelDebug.cc einen SVN Writer für DOFVektoren hinzugefügt
parent 66434cfd
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Showing with 188 additions and 53 deletions
AMDiS/src/Tetrahedron.cc
View file @ 3222f37e
......@@ -227,8 +227,9 @@ namespace AMDiS {
{
FUNCNAME("Tetrahedron::getNodeDofsAtFace()");
if (!child[0])
if (!child[0]){
return;
}
switch (bound.ithObj) {
case 0:
......@@ -292,8 +293,10 @@ namespace AMDiS {
{
FUNCNAME("Tetrahedron::getNodeDofsAtEdge()");
if (!child[0])
return;
if (!child[0]){
return;
}
int n0 = (baseDofPtr ? 0 : feSpace->getAdmin()->getNumberOfPreDofs(VERTEX));
BoundaryObject nextBound0 = bound, nextBound1 = bound;
......@@ -306,13 +309,15 @@ namespace AMDiS {
nextBound1.reverseMode = false;
if (bound.reverseMode) {
child[1]->getNodeDofs(feSpace, nextBound0, dofs, baseDofPtr);
dofs.push_back(&(child[0]->getDof()[3][n0]));
child[0]->getNodeDofs(feSpace, nextBound1, dofs, baseDofPtr);
child[1]->getNodeDofs(feSpace, nextBound0, dofs, baseDofPtr);
dofs.push_back(&(child[0]->getDof()[3][n0]));
child[0]->getNodeDofs(feSpace, nextBound1, dofs, baseDofPtr);
} else {
child[0]->getNodeDofs(feSpace, nextBound0, dofs, baseDofPtr);
dofs.push_back(&(child[0]->getDof()[3][n0]));
child[1]->getNodeDofs(feSpace, nextBound1, dofs, baseDofPtr);
child[0]->getNodeDofs(feSpace, nextBound0, dofs, baseDofPtr);
dofs.push_back(&(child[0]->getDof()[3][n0]));
child[1]->getNodeDofs(feSpace, nextBound1, dofs, baseDofPtr);
}
break;
......@@ -333,6 +338,7 @@ namespace AMDiS {
if (nextBound1.ithObj != -1)
child[1]->getNodeDofs(feSpace, nextBound1, dofs, baseDofPtr);
}
}
......@@ -365,21 +371,30 @@ namespace AMDiS {
// element is also refined. Then we have go down further in refinement
// hierarchie.
if (bound.reverseMode) {
if (nextBound1.ithObj >= 0)
child[1]->getHigherOrderDofs(feSpace, nextBound1, dofs,
baseDofPtr, dofGeoIndex);
if (nextBound0.ithObj >= 0)
child[0]->getHigherOrderDofs(feSpace, nextBound0, dofs,
baseDofPtr, dofGeoIndex);
// Additonal Check if Boundary Edge is NOT Refinement Edge of BoundaryObject
// AND the complete Edge is part of both childs
// therefore only recursion on ONE child is necessary
if ( (bound.ithObj > 0) && (nextBound0.ithObj >= 0 && nextBound1.ithObj >= 0) ){
child[0]->getHigherOrderDofs(feSpace, nextBound0, dofs,
baseDofPtr, dofGeoIndex);
} else {
if (nextBound0.ithObj >= 0)
child[0]->getHigherOrderDofs(feSpace, nextBound0, dofs,
baseDofPtr, dofGeoIndex);
if (nextBound1.ithObj >= 0)
child[1]->getHigherOrderDofs(feSpace, nextBound1, dofs,
baseDofPtr, dofGeoIndex);
if (bound.reverseMode) {
if (nextBound1.ithObj >= 0)
child[1]->getHigherOrderDofs(feSpace, nextBound1, dofs,
baseDofPtr, dofGeoIndex);
if (nextBound0.ithObj >= 0)
child[0]->getHigherOrderDofs(feSpace, nextBound0, dofs,
baseDofPtr, dofGeoIndex);
} else {
if (nextBound0.ithObj >= 0)
child[0]->getHigherOrderDofs(feSpace, nextBound0, dofs,
baseDofPtr, dofGeoIndex);
if (nextBound1.ithObj >= 0)
child[1]->getHigherOrderDofs(feSpace, nextBound1, dofs,
baseDofPtr, dofGeoIndex);
}
}
} else {
// Either the edge is not contained in further refined children, or
// the element is not refined further on this edge. Then we can get
......@@ -401,9 +416,10 @@ namespace AMDiS {
do {
if (elDofIter.getCurrentPos() == 1 &&
elDofIter.getCurrentElementPos() == bound.ithObj) {
dofs.push_back(elDofIter.getDofPtr());
if (dofGeoIndex != NULL)
dofGeoIndex->push_back(EDGE);
dofs.push_back(elDofIter.getDofPtr());
if (dofGeoIndex != NULL)
dofGeoIndex->push_back(EDGE);
}
} while (elDofIter.next());
}
......@@ -474,8 +490,11 @@ namespace AMDiS {
addDof = true;
else
addDof = false;
break;
case 3:
// On CENTER, dof can not be part on internal boundary
addDof = false;
break;
default:
ERROR_EXIT("Should not happen!\n");
}
......@@ -483,12 +502,13 @@ namespace AMDiS {
if (addDof) {
if (baseDofPtr)
dofs.push_back(elDofIter.getBaseDof());
dofs.push_back(elDofIter.getBaseDof());
else
dofs.push_back(elDofIter.getDofPtr());
dofs.push_back(elDofIter.getDofPtr());
if (dofGeoIndex != NULL)
dofGeoIndex->push_back(elDofIter.getPosIndex());
dofGeoIndex->push_back(elDofIter.getPosIndex());
}
next = (baseDofPtr ? elDofIter.nextStrict() : elDofIter.next());
......@@ -499,6 +519,7 @@ namespace AMDiS {
default:
ERROR_EXIT("Should not happen!\n");
}
}
......
AMDiS/src/parallel/DofComm.cc
View file @ 3222f37e
......@@ -63,31 +63,32 @@ namespace AMDiS {
for (unsigned int i = 0; i < feSpaces.size(); i++)
for (int level = 0; level < nLevel; level++)
for (InteriorBoundary::iterator it(boundary, level); !it.end(); ++it)
it->rankObj.el->getAllDofs(feSpaces[i], it->rankObj,
data[level][it.getRank()][feSpaces[i]]);
for (InteriorBoundary::iterator it(boundary, level); !it.end(); ++it){
it->rankObj.el->getAllDofs(feSpaces[i], it->rankObj,
data[level][it.getRank()][feSpaces[i]]);
}
// === Remove empty data containers. ===
for (unsigned int i = 0; i < data.size(); i++) {
DataIter dit = data[i].begin();
while (dit != data[i].end()) {
FeMapIter it = dit->second.begin();
while (it != dit->second.end()) {
if (it->second.size() == 0) {
const FiniteElemSpace *fe = it->first;
++it;
dit->second.erase(fe);
} else
++it;
}
DataIter dit = data[i].begin();
while (dit != data[i].end()) {
FeMapIter it = dit->second.begin();
while (it != dit->second.end()) {
if (it->second.size() == 0) {
const FiniteElemSpace *fe = it->first;
++it;
dit->second.erase(fe);
} else
++it;
}
if (dit->second.size() == 0)
data[i].erase(dit++);
else
++dit;
}
if (dit->second.size() == 0)
data[i].erase(dit++);
else
++dit;
}
}
}
......
AMDiS/src/parallel/MeshDistributor.cc
View file @ 3222f37e
......@@ -228,7 +228,7 @@ namespace AMDiS {
Parameters::get("parallel->debug->write mesh partitioning", writePartMesh);
if (writePartMesh > 0) {
debug::writeElementIndexMesh(mesh, debugOutputDir + "elementIndex");
debug::writeElementIndexMesh(mesh , debugOutputDir + "elementIndex");
ParallelDebug::writePartitioning(*this, debugOutputDir + "part.vtu");
}
}
......@@ -1803,13 +1803,23 @@ namespace AMDiS {
}
// === Update DOF admins due to new number of DOFs. ===
lastMeshChangeIndex = mesh->getChangeIndex();
#if (DEBUG != 0)
static int fileNumber(0); //improvised counter for adapt Iteration
stringstream ss;
ss << debugOutputDir << "elementMaps." << fileNumber ;
//write local Element Maps to csv file
ParallelDebug::writeCsvElementMap(feSpaces[0],
*(dofMaps[0]),
ss.str(), "csv");
fileNumber++;
ParallelDebug::testDofContainerCommunication(*this);
MSG("------------- Debug information -------------\n");
......@@ -1838,11 +1848,20 @@ namespace AMDiS {
int test = 0;
Parameters::get("parallel->remove periodic boundary", test);
if (test == 0) {
ParallelDebug::testCommonDofs(*this, true);
ParallelDebug::testGlobalIndexByCoords(*this);
// if (test == 0) {
//121106 replaced if statement
if(true){
//write latest mesh properties to vtu file
debug::writeElementIndexMesh(mesh , debugOutputDir + "elementIndex");
ParallelDebug::writePartitioning(*this, debugOutputDir + "part.vtu");
ParallelDebug::testCommonDofs(*this, true);
ParallelDebug::testGlobalIndexByCoords(*this);
}
#else
for (int i = 0; i < static_cast<int>(dofMaps.size()); i++) {
vector<const FiniteElemSpace*>& dofMapSpaces = dofMaps[i]->getFeSpaces();
......
AMDiS/src/parallel/ParallelDebug.cc
View file @ 3222f37e
......@@ -19,6 +19,7 @@
#include "StdMpi.h"
#include "Debug.h"
#include "io/VtkWriter.h"
#include "ElementDofIterator.h"
namespace AMDiS {
......@@ -914,4 +915,87 @@ namespace AMDiS {
bound.neighObj.elIndex, mesh->getDim(),
code.toStr().c_str());
}
void ParallelDebug::writeCsvElementMap(const FiniteElemSpace *feSpace,
ParallelDofMapping &dofMap,
string prefix,
string postfix)
{
FUNCNAME("ParallelDebug::writeCsvElementMap()");
MSG("writing local Element map to CSV File \n");
Mesh *mesh = feSpace->getMesh();
stringstream filename;
filename << prefix << "-" << MPI::COMM_WORLD.Get_rank() << "." << postfix;
ofstream file;
file.open(filename.str().c_str());
DOFVector<WorldVector<double> > dofCoords(feSpace, "DOF coords");
mesh->getDofIndexCoords(dofCoords);
TraverseStack stack;
ElInfo *elInfo = stack.traverseFirst(mesh,
-1,
Mesh::CALL_EVERY_EL_POSTORDER);
while (elInfo) {
/*
MSG("Start traverse element %d in level %d\n",
elInfo->getElement()->getIndex(),
elInfo->getLevel());
*/
// check if Element is Leaflevel
// because higherOrderDofs(=NON VERTICES DOFS) are not saved in nonleaf Elements
if (elInfo->getElement()->isLeaf()) {
//traverse ALL DOFS
ElementDofIterator elDofIter(feSpace, true);
elDofIter.reset(elInfo->getElement());
int locDofNumber = 0;
do {
WorldVector<double> c = dofCoords[elDofIter.getDof()];
file << elInfo->getElement()->getIndex() << "\t"; //element number
file << elInfo->getLevel() << "\t"; //element Level
file << elDofIter.getDof() << "\t"; //dof number
file << elDofIter.getCurrentPos()+1 << "\t"; //dof type (+1 to pseudo convert to geoIndex, does not work for CENTER DOFS( geoIndex=0))
file << c[0] << "\t"; //dof coords
file << c[1] << "\t";
file << c[2] << "\t";
file << locDofNumber << "\t"; //local Dof number
file << elInfo->getType() << "\n"; //element Type
locDofNumber++;
} while (elDofIter.next());
} else {
// traverse only VERTEX DOFS
for (int i = 0; i < mesh->getGeo(VERTEX); i++) {
DegreeOfFreedom dof = elInfo->getElement()->getDof(i, 0);
WorldVector<double> c = dofCoords[dof];
file << elInfo->getElement()->getIndex() << "\t"; //element number
file << elInfo->getLevel() << "\t"; //element Level
file << dof << "\t"; //dof number
file << VERTEX << "\t"; //dof type
file << c[0] << "\t"; //dof coords
file << c[1] << "\t";
file << c[2] << "\t";
file << i << "\t"; //local Dof number
file << elInfo->getType() << "\n"; //element Type
}
}
elInfo = stack.traverseNext(elInfo);
}
}
}
AMDiS/src/parallel/ParallelDebug.h
View file @ 3222f37e
......@@ -189,6 +189,16 @@ namespace AMDiS {
static void followBoundary(Mesh *mesh,
AtomicBoundary &bound,
MeshStructure &code);
/** \brief
* Writes Element Map of local Rank
* Map containes for each DOF in each Element (resulting in massive doubling of DOFs):
* localElementNumber elementLevel localDOFNumber dofType dofCoords(0-2) elementLocalDOFNumber typeOfElement (0-2)
*/
static void writeCsvElementMap(const FiniteElemSpace *feSpace,
ParallelDofMapping &dofMap,
string prefix,
string postfix);
};
} // namespace AMDiS
......
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