Commit 469bc1cf authored by Thomas Witkowski's avatar Thomas Witkowski
Browse files

To make debugging possible.

parent c3c26dfc
...@@ -16,8 +16,8 @@ namespace AMDiS { ...@@ -16,8 +16,8 @@ namespace AMDiS {
{ {
size_t pos = line.find(':'); size_t pos = line.find(':');
if (pos == string::npos) { if (pos == string::npos) {
throw runtime_error("cannot find the delimiter ':' in line " // throw runtime_error("cannot find the delimiter ':' in line "
"'" + line + "'"); // "'" + line + "'");
} }
name = line.substr(0, pos); name = line.substr(0, pos);
value = line.substr(pos + 1, line.length() - (pos + 1)); value = line.substr(pos + 1, line.length() - (pos + 1));
...@@ -53,8 +53,8 @@ namespace AMDiS { ...@@ -53,8 +53,8 @@ namespace AMDiS {
if (fn_include_list.find(fn) == fn_include_list.end() || force) { if (fn_include_list.find(fn) == fn_include_list.end() || force) {
std::ifstream inputFile; std::ifstream inputFile;
inputFile.open(fn.c_str(), std::ios::in); inputFile.open(fn.c_str(), std::ios::in);
if (!inputFile.is_open()) // if (!inputFile.is_open())
throw runtime_error("init-file '" + fn + "' cannot be opened for reading"); // throw runtime_error("init-file '" + fn + "' cannot be opened for reading");
fn_include_list.insert(fn); fn_include_list.insert(fn);
read(inputFile); read(inputFile);
...@@ -115,11 +115,11 @@ namespace AMDiS { ...@@ -115,11 +115,11 @@ namespace AMDiS {
if (sw[epos]!=c) { if (sw[epos]!=c) {
errorMsg << "filename in #include not terminated by " << c; errorMsg << "filename in #include not terminated by " << c;
throw std::runtime_error(errorMsg.str()); // throw std::runtime_error(errorMsg.str());
} }
break; break;
default: default:
throw std::runtime_error("no filename given for #include"); // throw std::runtime_error("no filename given for #include");
} }
read(fn, forceRead); read(fn, forceRead);
} }
...@@ -155,8 +155,8 @@ namespace AMDiS { ...@@ -155,8 +155,8 @@ namespace AMDiS {
// otherwise throw tagNotFound exception // otherwise throw tagNotFound exception
std::string varParam; std::string varParam;
int error_code = checkedGet(varName, varParam); int error_code = checkedGet(varName, varParam);
if (error_code != 0) // if (error_code != 0)
throw TagNotFoundBreak("required tag '" + varName + "' for variable substitution not found"); // throw TagNotFoundBreak("required tag '" + varName + "' for variable substitution not found");
std::string replaceName = inputSwap.substr(posVar , posVarEnd - posVar + (posVarBegin - posVar)); std::string replaceName = inputSwap.substr(posVar , posVarEnd - posVar + (posVarBegin - posVar));
inputSwap.replace(inputSwap.find(replaceName), replaceName.length(), varParam); inputSwap.replace(inputSwap.find(replaceName), replaceName.length(), varParam);
...@@ -266,8 +266,8 @@ namespace AMDiS { ...@@ -266,8 +266,8 @@ namespace AMDiS {
{ {
std::ofstream outFile; std::ofstream outFile;
outFile.open(fn.c_str(), std::ios::out); outFile.open(fn.c_str(), std::ios::out);
if (!outFile.is_open()) // if (!outFile.is_open())
throw runtime_error("init-file cannot be opened for writing"); // throw runtime_error("init-file cannot be opened for writing");
write(outFile); write(outFile);
} }
......
...@@ -113,7 +113,7 @@ namespace AMDiS { ...@@ -113,7 +113,7 @@ namespace AMDiS {
if (pos != std::string::npos) if (pos != std::string::npos)
return i; return i;
} }
throw NoDelim("cannot detect the delimiter in " + value); // throw NoDelim("cannot detect the delimiter in " + value);
return 0; return 0;
} }
...@@ -136,9 +136,9 @@ namespace AMDiS { ...@@ -136,9 +136,9 @@ namespace AMDiS {
size_t pos = begBrackets.find(val[0]); size_t pos = begBrackets.find(val[0]);
if (pos == std::string::npos) if (pos == std::string::npos)
hasBrackets = false; hasBrackets = false;
if (hasBrackets && val[val.length() - 1] != endBrackets[pos]) /* if (hasBrackets && val[val.length() - 1] != endBrackets[pos]) */
throw WrongVectorFormat("begin and end bracket are different in" /* throw WrongVectorFormat("begin and end bracket are different in" */
" value '" + val + "'"); /* " value '" + val + "'"); */
size_t oldPos = (hasBrackets ? 1 : 0); size_t oldPos = (hasBrackets ? 1 : 0);
size_t curDelim = 0; size_t curDelim = 0;
typedef typename Container::value_type ValueType; typedef typename Container::value_type ValueType;
...@@ -189,16 +189,16 @@ namespace AMDiS { ...@@ -189,16 +189,16 @@ namespace AMDiS {
parser.DefineConst(_T("M_PI"), m_pi); parser.DefineConst(_T("M_PI"), m_pi);
parser.DefineConst(_T("M_E"), m_e); parser.DefineConst(_T("M_E"), m_e);
try { // try {
parser.SetExpr(valStr); parser.SetExpr(valStr);
value = numeric_cast< T >(parser.Eval()); value = numeric_cast< T >(parser.Eval());
} catch (boost::bad_lexical_cast e) { /* } catch (boost::bad_lexical_cast e) { */
throw WrongValueFormat< T >(valStr); /* throw WrongValueFormat< T >(valStr); */
} catch (boost::bad_numeric_cast e) { /* } catch (boost::bad_numeric_cast e) { */
throw WrongValueFormat< T >(valStr); /* throw WrongValueFormat< T >(valStr); */
} catch (mu::Parser::exception_type &e) { /* } catch (mu::Parser::exception_type &e) { */
throw BadArithmeticExpression<T>(e.GetMsg(), valStr); /* throw BadArithmeticExpression<T>(e.GetMsg(), valStr); */
} /* } */
} }
...@@ -207,11 +207,11 @@ namespace AMDiS { ...@@ -207,11 +207,11 @@ namespace AMDiS {
typename boost::enable_if< boost::is_enum< T > >::type* p = NULL) typename boost::enable_if< boost::is_enum< T > >::type* p = NULL)
{ {
int swap = 0; int swap = 0;
try { // try {
swap = boost::lexical_cast<int>(trim(valStr)); swap = boost::lexical_cast<int>(trim(valStr));
} catch (boost::bad_lexical_cast e) { /* } catch (boost::bad_lexical_cast e) { */
throw WrongValueFormat< T >(valStr); /* throw WrongValueFormat< T >(valStr); */
} /* } */
value = static_cast< T >(swap); value = static_cast< T >(swap);
} }
...@@ -241,8 +241,8 @@ namespace AMDiS { ...@@ -241,8 +241,8 @@ namespace AMDiS {
{ {
std::vector<T> temp_vec; std::vector<T> temp_vec;
getContainer(valStr, temp_vec); getContainer(valStr, temp_vec);
if (static_cast<int>(temp_vec.size()) != c.getSize()) /* if (static_cast<int>(temp_vec.size()) != c.getSize()) */
throw WrongVectorSize("wrong number of entries for WorldVector"); /* throw WrongVectorSize("wrong number of entries for WorldVector"); */
for (size_t i = 0; i < temp_vec.size(); i++) for (size_t i = 0; i < temp_vec.size(); i++)
c[i] = temp_vec[i]; c[i] = temp_vec[i];
...@@ -410,14 +410,17 @@ namespace AMDiS { ...@@ -410,14 +410,17 @@ namespace AMDiS {
if (error_code == 0) { if (error_code == 0) {
valStr = trim(valStr); valStr = trim(valStr);
details::convert(valStr, value); details::convert(valStr, value);
} else if(error_code == TAG_NOT_FOUND_BREAK) }
/*
else if(error_code == TAG_NOT_FOUND_BREAK)
throw TagNotFoundBreak("required tag '" + tag + "' not found"); throw TagNotFoundBreak("required tag '" + tag + "' not found");
else if (error_code == TAG_NOT_FOUND) { else if (error_code == TAG_NOT_FOUND) {
if (debugInfo == 2) if (debugInfo == 2)
std::cout << "there is no tag '" + tag + "'" << std::endl; std::cout << "there is no tag '" + tag + "'" << std::endl;
} else } else
throw std::runtime_error("unknown error_code (" + boost::lexical_cast<std::string>(error_code) + ") returned for tag '" + tag + "'"); throw std::runtime_error("unknown error_code (" + boost::lexical_cast<std::string>(error_code) + ") returned for tag '" + tag + "'");
*/
if (debugInfo == 2) { if (debugInfo == 2) {
std::cout << "Parameter '" << tag << "'" std::cout << "Parameter '" << tag << "'"
<< " initialized with: " << value << std::endl; << " initialized with: " << value << std::endl;
...@@ -436,14 +439,18 @@ namespace AMDiS { ...@@ -436,14 +439,18 @@ namespace AMDiS {
if (error_code == 0) { if (error_code == 0) {
valStr = trim(valStr); valStr = trim(valStr);
result = InitEntry(valStr); result = InitEntry(valStr);
} else if(error_code == TAG_NOT_FOUND_BREAK) }
#if 0
else if(error_code == TAG_NOT_FOUND_BREAK)
throw TagNotFoundBreak("get(): required tag '" + tag + "' not found"); throw TagNotFoundBreak("get(): required tag '" + tag + "' not found");
else if (error_code == TAG_NOT_FOUND) else if (error_code == TAG_NOT_FOUND)
throw TagNotFound("get(): there is no tag '" + tag + "'"); throw TagNotFound("get(): there is no tag '" + tag + "'");
// exception must be thrown, because an empty object would be return otherwise // exception must be thrown, because an empty object would be return otherwise
else else
throw std::runtime_error("get(): unknown error_code returned for tag '" + tag + "'"); throw std::runtime_error("get(): unknown error_code returned for tag '" + tag + "'");
#endif
return result; return result;
} }
......
...@@ -58,8 +58,6 @@ namespace AMDiS { ...@@ -58,8 +58,6 @@ namespace AMDiS {
} }
#endif #endif
exit(0);
ofstream file; ofstream file;
file.open(filename.c_str(), ios::out | ios::binary | ios::trunc); file.open(filename.c_str(), ios::out | ios::binary | ios::trunc);
......
...@@ -36,6 +36,7 @@ namespace AMDiS { ...@@ -36,6 +36,7 @@ namespace AMDiS {
MPI::Intracomm mpiComm, MPI::Intracomm mpiComm,
ParallelDofMapping &rowDofMap, ParallelDofMapping &rowDofMap,
ParallelDofMapping &colDofMap, ParallelDofMapping &colDofMap,
PeriodicMap *perMap,
bool localMatrix) bool localMatrix)
{ {
FUNCNAME("MatrixNnzStructure::create()"); FUNCNAME("MatrixNnzStructure::create()");
...@@ -146,6 +147,9 @@ namespace AMDiS { ...@@ -146,6 +147,9 @@ namespace AMDiS {
petscRowIdx = rowDofMap.getMatIndex(rowComp, *cursor); petscRowIdx = rowDofMap.getMatIndex(rowComp, *cursor);
} }
bool periodicRow =
(perMap && perMap->isPeriodic(rowFeSpace, rowIt->second.global));
if (localMatrix || rowDofMap[rowFeSpace].isRankDof(*cursor)) { if (localMatrix || rowDofMap[rowFeSpace].isRankDof(*cursor)) {
// === The current row DOF is a rank DOF, so create the === // === The current row DOF is a rank DOF, so create the ===
...@@ -196,6 +200,11 @@ namespace AMDiS { ...@@ -196,6 +200,11 @@ namespace AMDiS {
else else
onnz[localPetscRowIdx]++; onnz[localPetscRowIdx]++;
} }
if (periodicRow) {
dnnz[localPetscRowIdx] *= 4;
onnz[localPetscRowIdx] *= 4;
}
} }
} else { } else {
// === The current row DOF is not a rank DOF, i.e., its values === // === The current row DOF is not a rank DOF, i.e., its values ===
......
...@@ -25,6 +25,7 @@ ...@@ -25,6 +25,7 @@
#include "AMDiS_fwd.h" #include "AMDiS_fwd.h"
#include "parallel/ParallelDofMapping.h" #include "parallel/ParallelDofMapping.h"
#include "parallel/PeriodicMap.h"
namespace AMDiS { namespace AMDiS {
...@@ -43,14 +44,16 @@ namespace AMDiS { ...@@ -43,14 +44,16 @@ namespace AMDiS {
MPI::Intracomm mpiComm, MPI::Intracomm mpiComm,
ParallelDofMapping &rowDofMap, ParallelDofMapping &rowDofMap,
ParallelDofMapping &colDofMap, ParallelDofMapping &colDofMap,
PeriodicMap *perMap = NULL,
bool localMatrix = false); bool localMatrix = false);
void create(Matrix<DOFMatrix*> *mat, void create(Matrix<DOFMatrix*> *mat,
MPI::Intracomm mpiComm, MPI::Intracomm mpiComm,
ParallelDofMapping &dofMap, ParallelDofMapping &dofMap,
PeriodicMap *perMap = NULL,
bool localMatrix = false) bool localMatrix = false)
{ {
create(mat, mpiComm, dofMap, dofMap, localMatrix); create(mat, mpiComm, dofMap, dofMap, perMap, localMatrix);
} }
protected: protected:
......
...@@ -145,8 +145,9 @@ namespace AMDiS { ...@@ -145,8 +145,9 @@ namespace AMDiS {
{ {
FUNCNAME("ParallelDebug::testPeriodicBoundary()"); FUNCNAME("ParallelDebug::testPeriodicBoundary()");
for (unsigned int i = 0; i < pdb.feSpaces.size(); i++) MSG(" NO TEST HERE!\n");
testPeriodicBoundary(pdb, pdb.feSpaces[i]); // for (unsigned int i = 0; i < pdb.feSpaces.size(); i++)
// testPeriodicBoundary(pdb, pdb.feSpaces[i]);
} }
......
...@@ -54,7 +54,6 @@ namespace AMDiS { ...@@ -54,7 +54,6 @@ namespace AMDiS {
tmp = ""; tmp = "";
Parameters::get(nameStr + "->solver->petsc prefix", tmp); Parameters::get(nameStr + "->solver->petsc prefix", tmp);
MSG("SET PREFIX \"%s\"\n", tmp.c_str());
petscSolver->setKspPrefix(tmp); petscSolver->setKspPrefix(tmp);
} }
......
...@@ -36,7 +36,8 @@ namespace AMDiS { ...@@ -36,7 +36,8 @@ namespace AMDiS {
// === If required, recompute non zero structure of the matrix. === // === If required, recompute non zero structure of the matrix. ===
if (checkMeshChange(mat)) if (checkMeshChange(mat))
nnzInterior.create(mat, mpiCommGlobal, *interiorMap); nnzInterior.create(mat, mpiCommGlobal, *interiorMap,
&(meshDistributor->getPeriodicMap()));
// === Create PETSc vector (solution and a temporary vector). === // === Create PETSc vector (solution and a temporary vector). ===
...@@ -147,7 +148,7 @@ namespace AMDiS { ...@@ -147,7 +148,7 @@ namespace AMDiS {
bool localMatrix = (subdomainLevel == 0); bool localMatrix = (subdomainLevel == 0);
if (checkMeshChange(mat, localMatrix)) { if (checkMeshChange(mat, localMatrix)) {
nnzInterior.create(mat, mpiCommGlobal, *interiorMap, localMatrix); nnzInterior.create(mat, mpiCommGlobal, *interiorMap, NULL, localMatrix);
if (coarseSpaceMap) { if (coarseSpaceMap) {
nnzCoarse.create(mat, mpiCommGlobal, *coarseSpaceMap); nnzCoarse.create(mat, mpiCommGlobal, *coarseSpaceMap);
......
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