Commit 4800ba78 authored by Thomas Witkowski's avatar Thomas Witkowski
Browse files

Fixed serialization.

parent d089b050
......@@ -89,6 +89,37 @@ namespace AMDiS {
}
void DofComm::serialize(ostream &out)
{
FUNCNAME("DofComm:serialize()");
MSG("MUSS DAS WIRKLICH SEIN????\n");
}
void DofComm::deserialize(istream &in,
map<const FiniteElemSpace*, map<int, const DegreeOfFreedom*> > dofIndexMap)
{
FUNCNAME("DofComm::deserialize()");
MSG("MUSS DAS WIRKLICH SEIN????\n");
}
void DofComm::serialize(LevelDataType &data, ostream &out)
{
FUNCNAME("DofComm:serialize()");
}
void DofComm::deserialize(LevelDataType &data,
istream &in,
map<const FiniteElemSpace*, map<int, const DegreeOfFreedom*> > dofIndexMap)
{
FUNCNAME("DofComm::deserialize()");
}
int DofComm::getNumberDofs(LevelDataType &data,
int level,
const FiniteElemSpace *feSpace,
......
......@@ -73,17 +73,11 @@ namespace AMDiS {
}
// Writes all data of this object to an output stream.
void serialize(ostream &out)
{
ERROR_EXIT("MUST BE IMPLEMENTED!\n");
}
void serialize(ostream &out);
// Reads the object data from an input stream.
void deserialize(istream &in,
map<const FiniteElemSpace*, map<int, const DegreeOfFreedom*> > dofIndexMap)
{
ERROR_EXIT("MUST BE IMPLEMENTED!\n");
}
map<const FiniteElemSpace*, map<int, const DegreeOfFreedom*> > dofIndexMap);
int getNumberDofs(LevelDataType &data,
int level,
......@@ -93,6 +87,12 @@ namespace AMDiS {
protected:
void createContainer(RankToBoundMap &boundary, LevelDataType &data);
void serialize(LevelDataType &data, ostream &out);
void deserialize(LevelDataType &data,
istream &in,
map<const FiniteElemSpace*, map<int, const DegreeOfFreedom*> > dofIndexMap);
protected:
/// This map contains for each rank the list of DOFs the current rank must
/// end to exchange solution DOFs at the interior boundaries.
......
......@@ -739,8 +739,6 @@ namespace AMDiS {
}
ERROR_EXIT("REWRITE SERIALIZATION!\n");
nSize = vertexInRank.size();
SerUtil::serialize(out, nSize);
for (map<DegreeOfFreedom, map<int, ElementObjectData> >::iterator it = vertexInRank.begin();
......@@ -874,7 +872,7 @@ namespace AMDiS {
faceLocalMap[data] = face;
}
ERROR_EXIT("REWRITE DESERIALIZATION!\n");
SerUtil::deserialize(in, nSize);
vertexInRank.clear();
......
......@@ -166,6 +166,8 @@ namespace AMDiS {
// isRankDofs to all matrices and rhs vector and to remove periodic
// boundary conditions (if there are some).
if (deserialized) {
createMeshLevelStructure();
updateMacroElementInfo();
setRankDofs();
......@@ -174,7 +176,8 @@ namespace AMDiS {
elObjDb.createMacroElementInfo(allMacroElements);
createBoundaryDofs();
// createBoundaryDofs();
updateLocalGlobalNumbering();
#if (DEBUG != 0)
ParallelDebug::writeDebugFile(feSpaces[feSpaces.size() - 1], dofMap,
......@@ -920,57 +923,62 @@ namespace AMDiS {
// === At least one rank mesh has been changed, so the boundaries must be ===
// === adapted to the new mesh structure. ===
if (skip == 0)
do {
bool meshChanged = false;
// To check the interior boundaries, the ownership of the boundaries is not
// important. Therefore, we add all boundaries to one boundary container.
RankToBoundMap allBound;
for (InteriorBoundary::iterator it(intBoundary.getOwn()); !it.end(); ++it)
if (skip == 0) {
int iterationCounter = 0;
do {
bool meshChanged = false;
// To check the interior boundaries, the ownership of the boundaries is not
// important. Therefore, we add all boundaries to one boundary container.
RankToBoundMap allBound;
for (InteriorBoundary::iterator it(intBoundary.getOwn()); !it.end(); ++it)
if ((mesh->getDim() == 2 && it->rankObj.subObj == EDGE) ||
(mesh->getDim() == 3 && it->rankObj.subObj == FACE))
allBound[it.getRank()].push_back(*it);
for (InteriorBoundary::iterator it(intBoundary.getOther());
!it.end(); ++it)
if ((mesh->getDim() == 2 && it->rankObj.subObj == EDGE) ||
(mesh->getDim() == 3 && it->rankObj.subObj == FACE))
allBound[it.getRank()].push_back(*it);
for (InteriorBoundary::iterator it(intBoundary.getPeriodic());
!it.end(); ++it) {
if (it.getRank() == mpiRank) {
if ((mesh->getDim() == 2 && it->rankObj.subObj == EDGE) ||
(mesh->getDim() == 3 && it->rankObj.subObj == FACE)) {
MeshStructure elCode;
elCode.init(it->rankObj);
MeshManipulation mm(mesh);
meshChanged |= mm.fitElementToMeshCode(elCode, it->neighObj);
}
} else {
for (InteriorBoundary::iterator it(intBoundary.getOther());
!it.end(); ++it)
if ((mesh->getDim() == 2 && it->rankObj.subObj == EDGE) ||
(mesh->getDim() == 3 && it->rankObj.subObj == FACE))
allBound[it.getRank()].push_back(*it);
allBound[it.getRank()].push_back(*it);
for (InteriorBoundary::iterator it(intBoundary.getPeriodic());
!it.end(); ++it) {
if (it.getRank() == mpiRank) {
if ((mesh->getDim() == 2 && it->rankObj.subObj == EDGE) ||
(mesh->getDim() == 3 && it->rankObj.subObj == FACE)) {
MeshStructure elCode;
elCode.init(it->rankObj);
MeshManipulation mm(mesh);
meshChanged |= mm.fitElementToMeshCode(elCode, it->neighObj);
}
} else {
if ((mesh->getDim() == 2 && it->rankObj.subObj == EDGE) ||
(mesh->getDim() == 3 && it->rankObj.subObj == FACE))
allBound[it.getRank()].push_back(*it);
}
}
}
// === Check the boundaries and adapt mesh if necessary. ===
MSG_DBG("Run checkAndAdaptBoundary ...\n");
meshChanged |= checkAndAdaptBoundary(allBound);
// === Check on all ranks if at least one rank's mesh has changed. ===
int sendValue = static_cast<int>(meshChanged);
recvAllValues = 0;
mpiComm.Allreduce(&sendValue, &recvAllValues, 1, MPI_INT, MPI_SUM);
// === Check the boundaries and adapt mesh if necessary. ===
MSG_DBG("Run checkAndAdaptBoundary ...\n");
meshChanged |= checkAndAdaptBoundary(allBound);
// === Check on all ranks if at least one rank's mesh has changed. ===
int sendValue = static_cast<int>(meshChanged);
recvAllValues = 0;
mpiComm.Allreduce(&sendValue, &recvAllValues, 1, MPI_INT, MPI_SUM);
MSG("Mesh changed on %d ranks!\n", recvAllValues);
iterationCounter++;
} while (recvAllValues != 0);
MSG("Mesh changed on %d ranks!\n", recvAllValues);
} while (recvAllValues != 0);
MSG("Number of iteration to adapt mesh: %d\n", iterationCounter);
}
#if (DEBUG != 0)
debug::writeMesh(feSpaces[0], -1, debugOutputDir + "mesh");
......@@ -1972,14 +1980,8 @@ namespace AMDiS {
intBoundary.serialize(out);
dofComm.serialize(out);
// === Serialieze FE space dependent data ===
dofMap.serialize(out);
periodicMap.serialize(out, feSpaces);
SerUtil::serialize(out, macroElementNeighbours);
int nSize = allMacroElements.size();
......@@ -1989,8 +1991,6 @@ namespace AMDiS {
SerUtil::serialize(out, nMeshChangesAfterLastRepartitioning);
SerUtil::serialize(out, repartitioningCounter);
levelData.serialize(out);
}
......@@ -2023,14 +2023,8 @@ namespace AMDiS {
intBoundary.deserialize(in, mesh);
dofComm.deserialize(in, dofIndexMap);
// === Deerialieze FE space dependent data ===
dofMap.deserialize(in);
periodicMap.deserialize(in, feSpaces);
SerUtil::deserialize(in, macroElementNeighbours);
int nSize = 0;
......@@ -2048,8 +2042,6 @@ namespace AMDiS {
SerUtil::deserialize(in, nMeshChangesAfterLastRepartitioning);
SerUtil::deserialize(in, repartitioningCounter);
levelData.deserialize(in);
deserialized = true;
}
......
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