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Commit 5e000286 authored by Thomas Witkowski's avatar Thomas Witkowski
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Introduction of optimized dual mesh traverse procedure.

parent a74b2cdb
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AMDiS/src/Assembler.cc
View file @ 5e000286
......@@ -23,15 +23,17 @@ namespace AMDiS {
rememberElVec(false),
elementMatrix(nRow, nCol),
elementVector(nRow),
tmpMat(nRow, nCol),
lastMatEl(NULL),
lastVecEl(NULL),
lastTraverseId(-1)
{}
Assembler::~Assembler()
{}
void Assembler::calculateElementMatrix(const ElInfo *elInfo,
ElementMatrix& userMat,
double factor)
......@@ -110,10 +112,9 @@ namespace AMDiS {
ERROR_EXIT("Da muss i noch ma testen!\n");
secondOrderAssembler->calculateElementMatrix(smallElInfo, mat);
ElementMatrix m(nRow, nRow);
smallElInfo->getSubElemCoordsMat_so(m, rowFESpace->getBasisFcts()->getDegree());
ElementMatrix &m =
smallElInfo->getSubElemCoordsMat_so(rowFESpace->getBasisFcts()->getDegree());
ElementMatrix tmpMat(nRow, nRow);
tmpMat = m * mat;
mat = tmpMat;
}
......@@ -131,10 +132,8 @@ namespace AMDiS {
if (zeroOrderAssembler) {
zeroOrderAssembler->calculateElementMatrix(smallElInfo, mat);
ElementMatrix m(nRow, nRow);
smallElInfo->getSubElemCoordsMat(m, rowFESpace->getBasisFcts()->getDegree());
ElementMatrix tmpMat(nRow, nRow);
ElementMatrix &m =
smallElInfo->getSubElemCoordsMat(rowFESpace->getBasisFcts()->getDegree());
if (smallElInfo == colElInfo)
tmpMat = m * mat;
......@@ -366,22 +365,24 @@ namespace AMDiS {
}
}
void Assembler::finishAssembling()
{
lastVecEl = NULL;
lastMatEl = NULL;
}
OptimizedAssembler::OptimizedAssembler(Operator *op,
Quadrature *quad2,
Quadrature *quad1GrdPsi,
Quadrature *quad1GrdPhi,
Quadrature *quad0,
const FiniteElemSpace *row,
const FiniteElemSpace *col)
: Assembler(op, row, col)
const FiniteElemSpace *rowFeSpace,
const FiniteElemSpace *colFeSpace)
: Assembler(op, rowFeSpace, colFeSpace)
{
bool opt = (row == col);
bool opt = (rowFeSpace->getBasisFcts() == colFeSpace->getBasisFcts());
// create sub assemblers
secondOrderAssembler =
......@@ -396,14 +397,15 @@ namespace AMDiS {
checkQuadratures();
}
StandardAssembler::StandardAssembler(Operator *op,
Quadrature *quad2,
Quadrature *quad1GrdPsi,
Quadrature *quad1GrdPhi,
Quadrature *quad0,
const FiniteElemSpace *row,
const FiniteElemSpace *col)
: Assembler(op, row, col)
const FiniteElemSpace *rowFeSpace,
const FiniteElemSpace *colFeSpace)
: Assembler(op, rowFeSpace, colFeSpace)
{
remember = false;
......
AMDiS/src/Assembler.h
View file @ 5e000286
......@@ -247,6 +247,9 @@ namespace AMDiS {
/// Locally stored element vector
ElementVector elementVector;
///
ElementMatrix tmpMat;
/** \brief
* Used to check whether \ref initElement() must be called, because
......
AMDiS/src/ComponentTraverseInfo.h
View file @ 5e000286
......@@ -87,7 +87,7 @@ namespace AMDiS {
return NULL;
}
int getStatus()
inline int getStatus() const
{
return status;
}
......@@ -166,16 +166,30 @@ namespace AMDiS {
return vectorComponents[row];
}
int getStatus(int row, int col)
inline int getStatus(int row, int col) const
{
return matrixComponents[row][col].getStatus();
}
int getStatus(int row)
inline int getStatus(int row) const
{
return vectorComponents[row].getStatus();
}
/** \brief
* Returns true, if for the given matrix component the row and the col FE spaces
* are equal. Note that this is also the case, if there is another aux FE space,
* that may be different from both, the row and the col FE spaces.
*/
inline bool eqSpaces(int row, int col) const
{
int status = matrixComponents[row][col].getStatus();
return (status == SingleComponentInfo::EQ_SPACES_NO_AUX ||
status == SingleComponentInfo::EQ_SPACES_WITH_AUX ||
status == SingleComponentInfo::EQ_SPACES_WITH_DIF_AUX);
}
const FiniteElemSpace* getAuxFeSpace(int row, int col)
{
return matrixComponents[row][col].getAuxFeSpace();
......@@ -185,6 +199,24 @@ namespace AMDiS {
{
return vectorComponents[row].getAuxFeSpace();
}
/// Returns true if there is an aux FE that is different from row and col FE spaces.
inline bool difAuxSpace(int row, int col) const
{
int status = matrixComponents[row][col].getStatus();
return (status == SingleComponentInfo::EQ_SPACES_WITH_DIF_AUX ||
status == SingleComponentInfo::DIF_SPACES_WITH_DIF_AUX);
}
/// Returns true if there is an aux FE that is different from row and col FE spaces.
inline bool difAuxSpace(int row) const
{
int status = vectorComponents[row].getStatus();
return (status == SingleComponentInfo::EQ_SPACES_WITH_DIF_AUX ||
status == SingleComponentInfo::DIF_SPACES_WITH_DIF_AUX);
}
/** \brief
* Returns the row FE space for a given row number, i.e., the FE space
......
AMDiS/src/DOFMatrix.cc
View file @ 5e000286
......@@ -221,6 +221,7 @@ namespace AMDiS {
DegreeOfFreedom col = colIndices[j];
double entry = elMat[i][j];
// std::cout << "ADD at " << row << " " << col << std::endl;
ins[row][col] += entry;
}
}
......
AMDiS/src/DOFVector.cc
View file @ 5e000286
......@@ -337,8 +337,7 @@ namespace AMDiS {
getLocalVector(largeElInfo->getElement(), localVec);
const BasisFunction *basFcts = feSpace->getBasisFcts();
mtl::dense2D<double> m(nBasFcts, nBasFcts);
smallElInfo->getSubElemCoordsMat(m, basFcts->getDegree());
mtl::dense2D<double> &m = smallElInfo->getSubElemCoordsMat(basFcts->getDegree());
DimVec<double> &grd1 = *grdTmp[myRank];
int parts = Global::getGeo(PARTS, dim);
......@@ -779,8 +778,7 @@ namespace AMDiS {
double *localVec = localVectors[omp_get_thread_num()];
getLocalVector(largeElInfo->getElement(), localVec);
mtl::dense2D<double> m(nBasFcts, nBasFcts);
smallElInfo->getSubElemCoordsMat(m, basFcts->getDegree());
mtl::dense2D<double> &m = smallElInfo->getSubElemCoordsMat(basFcts->getDegree());
for (int i = 0; i < nPoints; i++) {
result[i] = 0.0;
......
AMDiS/src/ElInfo.cc
View file @ 5e000286
......@@ -14,7 +14,7 @@
namespace AMDiS {
std::map<unsigned long, mtl::dense2D<double> > ElInfo::subElemMatrices;
std::vector<std::map<unsigned long, mtl::dense2D<double> > > ElInfo::subElemMatrices(4);
ElInfo::ElInfo(Mesh *aMesh)
: mesh(aMesh),
......
AMDiS/src/ElInfo.h
View file @ 5e000286
......@@ -239,12 +239,15 @@ namespace AMDiS {
return refinementPathLength;
}
virtual mtl::dense2D<double>& getSubElemCoordsMat(int degree) const
{
return subElemMatrices[degree][refinementPath];
}
virtual void getSubElemCoordsMat(mtl::dense2D<double>& mat,
int basisFctsDegree) const {}
virtual void getSubElemCoordsMat_so(mtl::dense2D<double>& mat,
int basisFctsDegree) const {}
virtual mtl::dense2D<double>& getSubElemCoordsMat_so(int degree) const
{
return subElemMatrices[degree][refinementPath];
}
/** \} */
......@@ -544,7 +547,7 @@ namespace AMDiS {
mtl::dense2D<double> subElemCoordsMat_so;
public:
static std::map<unsigned long, mtl::dense2D<double> > subElemMatrices;
static std::vector<std::map<unsigned long, mtl::dense2D<double> > > subElemMatrices;
/** \brief
* child_vertex[el_type][child][i] = father's local vertex index of new
......
AMDiS/src/ElInfo1d.cc
View file @ 5e000286
......@@ -295,45 +295,69 @@ namespace AMDiS {
}
void ElInfo1d::getSubElemCoordsMat(mtl::dense2D<double>& mat, int degree) const
mtl::dense2D<double>& ElInfo1d::getSubElemCoordsMat(int degree) const
{
FUNCNAME("ElInfo1d::getSubElemCoordsMat()");
switch (degree) {
case 1:
mat = mat_d1;
using namespace mtl;
if (subElemMatrices[degree].count(refinementPath) == 0) {
switch (degree) {
case 1:
{
dense2D<double> mat(mat_d1);
dense2D<double> tmpMat(num_rows(mat), num_rows(mat));
for (int i = 0; i < refinementPathLength; i++) {
if (refinementPath & (1 << i)) {
tmpMat = mat_d1_right * mat;
mat = tmpMat;
} else {
tmpMat = mat_d1_left * mat;
mat = tmpMat;
}
}
for (int i = 0; i < refinementPathLength; i++) {
if (refinementPath & (1 << i))
mat *= mat_d1_left;
else
mat *= mat_d1_right;
}
subElemMatrices[1][refinementPath] = mat;
}
break;
case 2:
{
dense2D<double> mat(mat_d2);
dense2D<double> tmpMat(num_rows(mat), num_rows(mat));
for (int i = 0; i < refinementPathLength; i++) {
if (refinementPath & (1 << i)) {
tmpMat = mat_d2_right * mat;
mat = tmpMat;
} else {
tmpMat = mat_d2_left * mat;
mat = tmpMat;
}
}
break;
case 2:
mat = mat_d2;
for (int i = 0; i < refinementPathLength; i++) {
if (refinementPath & (1 << i))
mat *= mat_d2_left;
else
mat *= mat_d2_right;
subElemMatrices[2][refinementPath] = mat;
}
break;
default:
ERROR_EXIT("Not supported for basis function degree: %d\n", degree);
}
break;
default:
ERROR_EXIT("Not supported for basis function degree: %d\n", degree);
}
return subElemMatrices[degree][refinementPath];
}
void ElInfo1d::getSubElemCoordsMat_so(mtl::dense2D<double>& mat, int degree) const
mtl::dense2D<double>& ElInfo1d::getSubElemCoordsMat_so(int degree) const
{
FUNCNAME("ElInfo1d::getSubElemCoordsMat_so()");
ERROR_EXIT("Reimplement!\n");
return subElemMatrices[degree][refinementPath];
#if 0
switch (degree) {
case 1:
mat = test2_val;
......@@ -345,6 +369,7 @@ namespace AMDiS {
default:
ERROR_EXIT("Not supported for basis function degree: %d\n", degree);
}
#endif
}
......
AMDiS/src/ElInfo1d.h
View file @ 5e000286
......@@ -62,9 +62,9 @@ namespace AMDiS {
return (i + 1) % 2;
}
void getSubElemCoordsMat(mtl::dense2D<double>& mat, int degree) const;
mtl::dense2D<double>& getSubElemCoordsMat(int degree) const;
void getSubElemCoordsMat_so(mtl::dense2D<double>& mat, int degree) const;
mtl::dense2D<double>& getSubElemCoordsMat_so(int degree) const;
protected:
static double mat_d1_val[2][2];
......
AMDiS/src/ElInfo2d.cc
View file @ 5e000286
......@@ -688,46 +688,47 @@ namespace AMDiS {
}
void ElInfo2d::getSubElemCoordsMat(mtl::dense2D<double>& mat, int degree) const
mtl::dense2D<double>& ElInfo2d::getSubElemCoordsMat(int degree) const
{
FUNCNAME("ElInfo2d::getSubElemCoordsMat()");
using namespace mtl;
switch (degree) {
case 1:
{
if (subElemMatrices.count(refinementPath) > 0) {
mat = subElemMatrices[refinementPath];
return;
}
mat = mat_d1;
dense2D<double> tmpMat(num_rows(mat), num_rows(mat));
for (int i = 0; i < refinementPathLength; i++) {
if (refinementPath & (1 << i)) {
tmpMat = mat_d1_right * mat;
mat = tmpMat;
} else {
tmpMat = mat_d1_left * mat;
mat = tmpMat;
if (subElemMatrices[degree].count(refinementPath) == 0) {
switch (degree) {
case 1:
{
dense2D<double> mat(mat_d1);
dense2D<double> tmpMat(num_rows(mat), num_rows(mat));
for (int i = 0; i < refinementPathLength; i++) {
if (refinementPath & (1 << i)) {
tmpMat = mat_d1_right * mat;
mat = tmpMat;
} else {
tmpMat = mat_d1_left * mat;
mat = tmpMat;
}
}
}
subElemMatrices[refinementPath] = mat;
subElemMatrices[1][refinementPath] = mat;
}
break;
default:
ERROR_EXIT("Not supported for basis function degree: %d\n", degree);
}
break;
default:
ERROR_EXIT("Not supported for basis function degree: %d\n", degree);
}
return subElemMatrices[degree][refinementPath];
}
void ElInfo2d::getSubElemCoordsMat_so(mtl::dense2D<double>& mat, int degree) const
mtl::dense2D<double>& ElInfo2d::getSubElemCoordsMat_so(int degree) const
{
FUNCNAME("ElInfo2d::getSubElemCoordsMat_so()");
ERROR_EXIT("Not yet implemented!\n");
return subElemMatrices[degree][refinementPath];
}
}
AMDiS/src/ElInfo2d.h
View file @ 5e000286
......@@ -58,9 +58,9 @@ namespace AMDiS {
/// 2-dimensional realisation of ElInfo's getElementNormal method.
double getElementNormal(WorldVector<double> &normal) const;
void getSubElemCoordsMat(mtl::dense2D<double>& mat, int degree) const;
mtl::dense2D<double>& getSubElemCoordsMat(int degree) const;
void getSubElemCoordsMat_so(mtl::dense2D<double>& mat, int degree) const;
mtl::dense2D<double>& getSubElemCoordsMat_so(int degree) const;
protected:
/// Temp vectors for function \ref calcGrdLambda.
......
AMDiS/src/ElInfo3d.cc
View file @ 5e000286
......@@ -591,19 +591,23 @@ namespace AMDiS {
}
void ElInfo3d::getSubElemCoordsMat(mtl::dense2D<double>& mat, int degree) const
mtl::dense2D<double>& ElInfo3d::getSubElemCoordsMat(int degree) const
{
FUNCNAME("ElInfo3d::getSubElemCoordsMat()");
ERROR_EXIT("Not yet implemented!\n");
return subElemMatrices[degree][refinementPath];
}
void ElInfo3d::getSubElemCoordsMat_so(mtl::dense2D<double>& mat, int degree) const
mtl::dense2D<double>& ElInfo3d::getSubElemCoordsMat_so(int degree) const
{
FUNCNAME("ElInfo3d::getSubElemCoordsMat_so()");
ERROR_EXIT("Not yet implemented!\n");
return subElemMatrices[degree][refinementPath];
}
}
AMDiS/src/ElInfo3d.h
View file @ 5e000286
......@@ -80,9 +80,9 @@ namespace AMDiS {
orientation = o;
}
void getSubElemCoordsMat(mtl::dense2D<double>& mat, int degree) const;
mtl::dense2D<double>& getSubElemCoordsMat(int degree) const;
void getSubElemCoordsMat_so(mtl::dense2D<double>& mat, int degree) const;
mtl::dense2D<double>& getSubElemCoordsMat_so(int degree) const;
protected:
/** \brief
......
AMDiS/src/FirstOrderAssembler.cc
View file @ 5e000286
......@@ -30,12 +30,12 @@ namespace AMDiS {
tmpLb.resize(omp_get_overall_max_threads(), Lb);
}
FirstOrderAssembler*
FirstOrderAssembler::getSubAssembler(Operator* op,
Assembler *assembler,
Quadrature *quad,
FirstOrderType type,
bool optimized)
FirstOrderAssembler* FirstOrderAssembler::getSubAssembler(Operator* op,
Assembler *assembler,
Quadrature *quad,
FirstOrderType type,
bool optimized)
{
std::vector<SubAssembler*> *subAssemblers =
optimized ?
......@@ -101,13 +101,17 @@ namespace AMDiS {
return newAssembler;
}
Stand10::Stand10(Operator *op, Assembler *assembler, Quadrature *quad)
: FirstOrderAssembler(op, assembler, quad, false, GRD_PSI)
{
name = "standard first order assembler";
psi = owner->getRowFESpace()->getBasisFcts();
phi = owner->getColFESpace()->getBasisFcts();
}
void Stand10::calculateElementMatrix(const ElInfo *elInfo, ElementMatrix& mat)
{
DimVec<double> grdPsi(dim, DEFAULT_VALUE, 0.0);
......@@ -137,6 +141,7 @@ namespace AMDiS {
}
}
void Stand10::calculateElementVector(const ElInfo *elInfo, ElementVector& vec)
{
DimVec<double> grdPsi(dim, DEFAULT_VALUE, 0.0);
......@@ -163,7 +168,9 @@ namespace AMDiS {
Quad10::Quad10(Operator *op, Assembler *assembler, Quadrature *quad)
: FirstOrderAssembler(op, assembler, quad, true, GRD_PSI)
{}
{
name = "fast quadrature first order assembler";
}
void Quad10::calculateElementMatrix(const ElInfo *elInfo, ElementMatrix& mat)
......@@ -208,6 +215,7 @@ namespace AMDiS {
}
}
void Quad10::calculateElementVector(const ElInfo *elInfo, ElementVector& vec)
{
VectorOfFixVecs<DimVec<double> > *grdPsi;
......@@ -244,9 +252,11 @@ namespace AMDiS {
}
}
Pre10::Pre10(Operator *op, Assembler *assembler, Quadrature *quad)
: FirstOrderAssembler(op, assembler, quad, true, GRD_PSI)
{
name = "precalculated first order assembler";
}
......@@ -331,9 +341,13 @@ namespace AMDiS {
}
}
Quad01::Quad01(Operator *op, Assembler *assembler, Quadrature *quad)
: FirstOrderAssembler(op, assembler, quad, true, GRD_PHI)
{}
{
name = "fast quadrature first order assembler";
}
void Quad01::calculateElementMatrix(const ElInfo *elInfo, ElementMatrix& mat)
{
......@@ -374,9 +388,13 @@ namespace AMDiS {
}
}
Pre01::Pre01(Operator *op, Assembler *assembler, Quadrature *quad)
: FirstOrderAssembler(op, assembler, quad, true, GRD_PHI)
{}
{
name = "precalculated first order assembler";
}
void Pre01::calculateElementMatrix(const ElInfo *elInfo, ElementMatrix& mat)
{
......@@ -422,6 +440,7 @@ namespace AMDiS {
}
}
void Pre10::calculateElementVector(const ElInfo *elInfo, ElementVector& vec)
{
const int *k;
......
AMDiS/src/Operator.cc
View file @ 5e000286
......@@ -1173,7 +1173,7 @@ namespace AMDiS {
}
void MatrixVec2_SOT::weakEval(const std::vector<WorldVector<double> > &grdUhAtQP,
std::vector<WorldVector<double> > &result) const
std::vector<WorldVector<double> > &result)
{
int nPoints = grdUhAtQP.size();
for (int iq = 0; iq < nPoints; iq++)
......@@ -1953,7 +1953,7 @@ namespace AMDiS {
}
void MatrixFct_SOT::weakEval(const std::vector<WorldVector<double> > &grdUhAtQP,
std::vector<WorldVector<double> > &result) const
std::vector<WorldVector<double> > &result)
{
int nPoints = grdUhAtQP.size();
WorldMatrix<double> A;
......@@ -1986,7 +1986,7 @@ namespace AMDiS {
}