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Commit 7e6ca7d1 authored by Thomas Witkowski's avatar Thomas Witkowski
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Bugfix in parallel deserialization.

parent 16722f40
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Showing with 158 additions and 186 deletions
AMDiS/libtool
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...@@ -44,7 +44,7 @@ available_tags=" CXX F77" ...@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG # ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host mars: # Libtool was configured on host deimos101:
# Shell to use when invoking shell scripts. # Shell to use when invoking shell scripts.
SHELL="/bin/sh" SHELL="/bin/sh"
...@@ -66,12 +66,12 @@ fast_install=yes ...@@ -66,12 +66,12 @@ fast_install=yes
# The host system. # The host system.
host_alias= host_alias=
host=ia64-unknown-linux-gnu host=x86_64-unknown-linux-gnu
host_os=linux-gnu host_os=linux-gnu
# The build system. # The build system.
build_alias= build_alias=
build=ia64-unknown-linux-gnu build=x86_64-unknown-linux-gnu
build_os=linux-gnu build_os=linux-gnu
# An echo program that does not interpret backslashes. # An echo program that does not interpret backslashes.
...@@ -82,13 +82,13 @@ AR="ar" ...@@ -82,13 +82,13 @@ AR="ar"
AR_FLAGS="cru" AR_FLAGS="cru"
# A C compiler. # A C compiler.
LTCC="gcc" LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags. # LTCC compiler flags.
LTCFLAGS="-g -O2" LTCFLAGS="-g -O2"
# A language-specific compiler. # A language-specific compiler.
CC="gcc" CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# Is the compiler the GNU C compiler? # Is the compiler the GNU C compiler?
with_gcc=yes with_gcc=yes
...@@ -97,7 +97,7 @@ with_gcc=yes ...@@ -97,7 +97,7 @@ with_gcc=yes
EGREP="grep -E" EGREP="grep -E"
# The linker used to build libraries. # The linker used to build libraries.
LD="/usr/ia64-suse-linux/bin/ld" LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links. # Whether we need hard or soft links.
LN_S="ln -s" LN_S="ln -s"
...@@ -147,7 +147,7 @@ pic_flag=" -fPIC -DPIC" ...@@ -147,7 +147,7 @@ pic_flag=" -fPIC -DPIC"
pic_mode=default pic_mode=default
# What is the maximum length of a command? # What is the maximum length of a command?
max_cmd_len=131072 max_cmd_len=32768
# Does compiler simultaneously support -c and -o options? # Does compiler simultaneously support -c and -o options?
compiler_c_o="yes" compiler_c_o="yes"
...@@ -171,7 +171,7 @@ dlopen_self=unknown ...@@ -171,7 +171,7 @@ dlopen_self=unknown
dlopen_self_static=unknown dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking. # Compiler flag to prevent dynamic linking.
link_static_flag="-static" link_static_flag=""
# Compiler flag to turn off builtin functions. # Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin" no_builtin_flag=" -fno-builtin"
...@@ -269,10 +269,10 @@ finish_eval="" ...@@ -269,10 +269,10 @@ finish_eval=""
global_symbol_pipe="sed -n -e 's/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'" global_symbol_pipe="sed -n -e 's/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'"
# Transform the output of nm in a proper C declaration # Transform the output of nm in a proper C declaration
global_symbol_to_cdecl="sed -n -e 's/^T .* \\(.*\\)\$/extern int \\1();/p' -e 's/^[ABCDGIRSTW]* .* \\(.*\\)\$/extern char \\1;/p'" global_symbol_to_cdecl="sed -n -e 's/^. .* \\(.*\\)\$/extern int \\1;/p'"
# Transform the output of nm in a C name address pair # Transform the output of nm in a C name address pair
global_symbol_to_c_name_address="sed -n -e 's/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p' -e 's/^[ABCDGIRSTW]* \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'" global_symbol_to_c_name_address="sed -n -e 's/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p' -e 's/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'"
# This is the shared library runtime path variable. # This is the shared library runtime path variable.
runpath_var=LD_RUN_PATH runpath_var=LD_RUN_PATH
...@@ -325,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM ...@@ -325,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown link_all_deplibs=unknown
# Compile-time system search path for libraries # Compile-time system search path for libraries
sys_lib_search_path_spec=" /usr/lib/gcc/ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../../ia64-suse-linux/lib/ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../../ia64-suse-linux/lib/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../ /lib/ia64-suse-linux/4.1.2/ /lib/ /usr/lib/ia64-suse-linux/4.1.2/ /usr/lib/" sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries # Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/ia64-suse-linux/lib /usr/local/lib /opt/kde3/lib /opt/gnome/lib /work/licsoft/lsf/6.2/linux2.6-glibc2.4-sn-ipf/lib /opt/sgi-dapl/lib /opt/tivoli/tsm/client/api/bin /usr/lib/sgi/intel9/ /usr/lib/sgi/intel8/ /usr/lib/sgi/intel7/ /usr/lib/sysadm/lib " sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler. # Fix the shell variable $srcfile for the compiler.
fix_srcfile_path="" fix_srcfile_path=""
...@@ -6760,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac` ...@@ -6760,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End: # End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX # ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host mars: # Libtool was configured on host deimos101:
# Shell to use when invoking shell scripts. # Shell to use when invoking shell scripts.
SHELL="/bin/sh" SHELL="/bin/sh"
...@@ -6782,12 +6782,12 @@ fast_install=yes ...@@ -6782,12 +6782,12 @@ fast_install=yes
# The host system. # The host system.
host_alias= host_alias=
host=ia64-unknown-linux-gnu host=x86_64-unknown-linux-gnu
host_os=linux-gnu host_os=linux-gnu
# The build system. # The build system.
build_alias= build_alias=
build=ia64-unknown-linux-gnu build=x86_64-unknown-linux-gnu
build_os=linux-gnu build_os=linux-gnu
# An echo program that does not interpret backslashes. # An echo program that does not interpret backslashes.
...@@ -6798,13 +6798,13 @@ AR="ar" ...@@ -6798,13 +6798,13 @@ AR="ar"
AR_FLAGS="cru" AR_FLAGS="cru"
# A C compiler. # A C compiler.
LTCC="gcc" LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags. # LTCC compiler flags.
LTCFLAGS="-g -O2" LTCFLAGS="-g -O2"
# A language-specific compiler. # A language-specific compiler.
CC="g++" CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC"
# Is the compiler the GNU C compiler? # Is the compiler the GNU C compiler?
with_gcc=yes with_gcc=yes
...@@ -6813,7 +6813,7 @@ with_gcc=yes ...@@ -6813,7 +6813,7 @@ with_gcc=yes
EGREP="grep -E" EGREP="grep -E"
# The linker used to build libraries. # The linker used to build libraries.
LD="/usr/ia64-suse-linux/bin/ld" LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links. # Whether we need hard or soft links.
LN_S="ln -s" LN_S="ln -s"
...@@ -6863,7 +6863,7 @@ pic_flag=" -fPIC -DPIC" ...@@ -6863,7 +6863,7 @@ pic_flag=" -fPIC -DPIC"
pic_mode=default pic_mode=default
# What is the maximum length of a command? # What is the maximum length of a command?
max_cmd_len=131072 max_cmd_len=32768
# Does compiler simultaneously support -c and -o options? # Does compiler simultaneously support -c and -o options?
compiler_c_o="yes" compiler_c_o="yes"
...@@ -6887,7 +6887,7 @@ dlopen_self=unknown ...@@ -6887,7 +6887,7 @@ dlopen_self=unknown
dlopen_self_static=unknown dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking. # Compiler flag to prevent dynamic linking.
link_static_flag="-static" link_static_flag=""
# Compiler flag to turn off builtin functions. # Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin" no_builtin_flag=" -fno-builtin"
...@@ -6942,11 +6942,11 @@ striplib="strip --strip-unneeded" ...@@ -6942,11 +6942,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a # Dependencies to place before the objects being linked to create a
# shared library. # shared library.
predep_objects="/usr/lib/gcc/ia64-suse-linux/4.1.2/../../../crti.o /usr/lib/gcc/ia64-suse-linux/4.1.2/crtbeginS.o" predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
# Dependencies to place after the objects being linked to create a # Dependencies to place after the objects being linked to create a
# shared library. # shared library.
postdep_objects="/usr/lib/gcc/ia64-suse-linux/4.1.2/crtendS.o /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../crtn.o" postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
# Dependencies to place before the objects being linked to create a # Dependencies to place before the objects being linked to create a
# shared library. # shared library.
...@@ -6954,11 +6954,11 @@ predeps="" ...@@ -6954,11 +6954,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a # Dependencies to place after the objects being linked to create a
# shared library. # shared library.
postdeps="-lstdc++ -lm -lgcc_s -lunwind -lc -lgcc_s -lunwind" postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
# The library search path used internally by the compiler when linking # The library search path used internally by the compiler when linking
# a shared library. # a shared library.
compiler_lib_search_path="-L/usr/lib/gcc/ia64-suse-linux/4.1.2 -L/usr/lib/gcc/ia64-suse-linux/4.1.2 -L/usr/lib/gcc/ia64-suse-linux/4.1.2/../../../../ia64-suse-linux/lib -L/usr/lib/gcc/ia64-suse-linux/4.1.2/../../.." compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# Method to check whether dependent libraries are shared objects. # Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all" deplibs_check_method="pass_all"
...@@ -6982,10 +6982,10 @@ finish_eval="" ...@@ -6982,10 +6982,10 @@ finish_eval=""
global_symbol_pipe="sed -n -e 's/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'" global_symbol_pipe="sed -n -e 's/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'"
# Transform the output of nm in a proper C declaration # Transform the output of nm in a proper C declaration
global_symbol_to_cdecl="sed -n -e 's/^T .* \\(.*\\)\$/extern int \\1();/p' -e 's/^[ABCDGIRSTW]* .* \\(.*\\)\$/extern char \\1;/p'" global_symbol_to_cdecl="sed -n -e 's/^. .* \\(.*\\)\$/extern int \\1;/p'"
# Transform the output of nm in a C name address pair # Transform the output of nm in a C name address pair
global_symbol_to_c_name_address="sed -n -e 's/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p' -e 's/^[ABCDGIRSTW]* \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'" global_symbol_to_c_name_address="sed -n -e 's/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p' -e 's/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'"
# This is the shared library runtime path variable. # This is the shared library runtime path variable.
runpath_var=LD_RUN_PATH runpath_var=LD_RUN_PATH
...@@ -7038,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM ...@@ -7038,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown link_all_deplibs=unknown
# Compile-time system search path for libraries # Compile-time system search path for libraries
sys_lib_search_path_spec=" /usr/lib/gcc/ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../../ia64-suse-linux/lib/ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../../ia64-suse-linux/lib/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../ /lib/ia64-suse-linux/4.1.2/ /lib/ /usr/lib/ia64-suse-linux/4.1.2/ /usr/lib/" sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries # Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/ia64-suse-linux/lib /usr/local/lib /opt/kde3/lib /opt/gnome/lib /work/licsoft/lsf/6.2/linux2.6-glibc2.4-sn-ipf/lib /opt/sgi-dapl/lib /opt/tivoli/tsm/client/api/bin /usr/lib/sgi/intel9/ /usr/lib/sgi/intel8/ /usr/lib/sgi/intel7/ /usr/lib/sysadm/lib " sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler. # Fix the shell variable $srcfile for the compiler.
fix_srcfile_path="" fix_srcfile_path=""
...@@ -7065,7 +7065,7 @@ include_expsyms="" ...@@ -7065,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77 # ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host mars: # Libtool was configured on host deimos101:
# Shell to use when invoking shell scripts. # Shell to use when invoking shell scripts.
SHELL="/bin/sh" SHELL="/bin/sh"
...@@ -7087,12 +7087,12 @@ fast_install=yes ...@@ -7087,12 +7087,12 @@ fast_install=yes
# The host system. # The host system.
host_alias= host_alias=
host=ia64-unknown-linux-gnu host=x86_64-unknown-linux-gnu
host_os=linux-gnu host_os=linux-gnu
# The build system. # The build system.
build_alias= build_alias=
build=ia64-unknown-linux-gnu build=x86_64-unknown-linux-gnu
build_os=linux-gnu build_os=linux-gnu
# An echo program that does not interpret backslashes. # An echo program that does not interpret backslashes.
...@@ -7103,22 +7103,22 @@ AR="ar" ...@@ -7103,22 +7103,22 @@ AR="ar"
AR_FLAGS="cru" AR_FLAGS="cru"
# A C compiler. # A C compiler.
LTCC="gcc" LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags. # LTCC compiler flags.
LTCFLAGS="-g -O2" LTCFLAGS="-g -O2"
# A language-specific compiler. # A language-specific compiler.
CC="gfortran" CC="g77"
# Is the compiler the GNU C compiler? # Is the compiler the GNU C compiler?
with_gcc=yes with_gcc=
# An ERE matcher. # An ERE matcher.
EGREP="grep -E" EGREP="grep -E"
# The linker used to build libraries. # The linker used to build libraries.
LD="/usr/ia64-suse-linux/bin/ld" LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links. # Whether we need hard or soft links.
LN_S="ln -s" LN_S="ln -s"
...@@ -7168,7 +7168,7 @@ pic_flag=" -fPIC" ...@@ -7168,7 +7168,7 @@ pic_flag=" -fPIC"
pic_mode=default pic_mode=default
# What is the maximum length of a command? # What is the maximum length of a command?
max_cmd_len=131072 max_cmd_len=32768
# Does compiler simultaneously support -c and -o options? # Does compiler simultaneously support -c and -o options?
compiler_c_o="yes" compiler_c_o="yes"
...@@ -7290,10 +7290,10 @@ finish_eval="" ...@@ -7290,10 +7290,10 @@ finish_eval=""
global_symbol_pipe="sed -n -e 's/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'" global_symbol_pipe="sed -n -e 's/^.*[ ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ ][ ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'"
# Transform the output of nm in a proper C declaration # Transform the output of nm in a proper C declaration
global_symbol_to_cdecl="sed -n -e 's/^T .* \\(.*\\)\$/extern int \\1();/p' -e 's/^[ABCDGIRSTW]* .* \\(.*\\)\$/extern char \\1;/p'" global_symbol_to_cdecl="sed -n -e 's/^. .* \\(.*\\)\$/extern int \\1;/p'"
# Transform the output of nm in a C name address pair # Transform the output of nm in a C name address pair
global_symbol_to_c_name_address="sed -n -e 's/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p' -e 's/^[ABCDGIRSTW]* \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'" global_symbol_to_c_name_address="sed -n -e 's/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p' -e 's/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'"
# This is the shared library runtime path variable. # This is the shared library runtime path variable.
runpath_var=LD_RUN_PATH runpath_var=LD_RUN_PATH
...@@ -7346,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM ...@@ -7346,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown link_all_deplibs=unknown
# Compile-time system search path for libraries # Compile-time system search path for libraries
sys_lib_search_path_spec=" /usr/lib/gcc/ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../../ia64-suse-linux/lib/ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../../ia64-suse-linux/lib/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../ia64-suse-linux/4.1.2/ /usr/lib/gcc/ia64-suse-linux/4.1.2/../../../ /lib/ia64-suse-linux/4.1.2/ /lib/ /usr/lib/ia64-suse-linux/4.1.2/ /usr/lib/" sys_lib_search_path_spec=" /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
# Run-time system search path for libraries # Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/ia64-suse-linux/lib /usr/local/lib /opt/kde3/lib /opt/gnome/lib /work/licsoft/lsf/6.2/linux2.6-glibc2.4-sn-ipf/lib /opt/sgi-dapl/lib /opt/tivoli/tsm/client/api/bin /usr/lib/sgi/intel9/ /usr/lib/sgi/intel8/ /usr/lib/sgi/intel7/ /usr/lib/sysadm/lib " sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler. # Fix the shell variable $srcfile for the compiler.
fix_srcfile_path="" fix_srcfile_path=""
......
AMDiS/src/Mesh.cc
View file @ 7e6ca7d1
...@@ -338,14 +338,13 @@ namespace AMDiS { ...@@ -338,14 +338,13 @@ namespace AMDiS {
delete *macroIt; delete *macroIt;
} }
int nRemainDofs = 0; int nRemainDofs = 0;
// Check now all the dofs, that have no owner anymore and therefore have to // Check now all the dofs, that have no owner anymore and therefore have to
// be removed. // be removed.
for (DofElMap::iterator dofsIt = dofsOwner.begin(); for (DofElMap::iterator dofsIt = dofsOwner.begin();
dofsIt != dofsOwner.end(); ++dofsIt) { dofsIt != dofsOwner.end(); ++dofsIt) {
if (dofsIt->second.size() == 0) if (dofsIt->second.size() == 0)
freeDOF(const_cast<DegreeOfFreedom*>(dofsIt->first), freeDOF(const_cast<DegreeOfFreedom*>(dofsIt->first),
dofsPosIndex[dofsIt->first]); dofsPosIndex[dofsIt->first]);
else else
nRemainDofs++; nRemainDofs++;
...@@ -358,21 +357,21 @@ namespace AMDiS { ...@@ -358,21 +357,21 @@ namespace AMDiS {
{ {
FUNCNAME("Mesh::traverse()"); FUNCNAME("Mesh::traverse()");
std::deque<MacroElement*>::iterator mel;
ElInfoStack elInfoStack(this); ElInfoStack elInfoStack(this);
ElInfo* elinfo = elInfoStack.getNextElement(); ElInfo* elinfo = elInfoStack.getNextElement();
Traverse tinfo(this, flag, level, el_fct); Traverse tinfo(this, flag, level, el_fct);
int sum = 0;
elinfo->setFillFlag(flag); elinfo->setFillFlag(flag);
if (flag.isSet(Mesh::CALL_LEAF_EL_LEVEL) || if (flag.isSet(Mesh::CALL_LEAF_EL_LEVEL) ||
flag.isSet(Mesh::CALL_EL_LEVEL) || flag.isSet(Mesh::CALL_EL_LEVEL) ||
flag.isSet(Mesh::CALL_MG_LEVEL)) { flag.isSet(Mesh::CALL_MG_LEVEL)) {
TEST(level >= 0)("invalid level: %d\n", level); TEST(level >= 0)("invalid level: %d\n", level);
} }
for (mel = macroElements.begin(); mel != macroElements.end(); mel++) { int sum = 0;
for (std::deque<MacroElement*>::iterator mel = macroElements.begin();
mel != macroElements.end(); mel++) {
elinfo->fillMacroInfo(*mel); elinfo->fillMacroInfo(*mel);
sum += tinfo.recursive(&elInfoStack); sum += tinfo.recursive(&elInfoStack);
} }
...@@ -389,7 +388,7 @@ namespace AMDiS { ...@@ -389,7 +388,7 @@ namespace AMDiS {
localAdmin->setMesh(this); localAdmin->setMesh(this);
std::vector<DOFAdmin*>::iterator dai = std::vector<DOFAdmin*>::iterator dai =
std::find(admin.begin(),admin.end(),localAdmin); std::find(admin.begin(), admin.end(), localAdmin);
TEST_EXIT(dai == admin.end()) TEST_EXIT(dai == admin.end())
("admin %s is already associated to mesh %s\n", ("admin %s is already associated to mesh %s\n",
...@@ -577,18 +576,18 @@ namespace AMDiS { ...@@ -577,18 +576,18 @@ namespace AMDiS {
int ndof = nDOF[position]; int ndof = nDOF[position];
if (ndof) { if (ndof) {
if (!dof) { if (!dof) {
MSG("dof = NULL, but ndof=%d\n", ndof); MSG("dof = NULL, but ndof = %d\n", ndof);
return; return;
} }
} else { } else {
if (dof) { if (dof)
MSG("dof != NULL, but ndof=0\n"); MSG("dof != NULL, but ndof = 0\n");
}
return; return;
} }
TEST_EXIT_DBG(ndof <= MAX_DOF) TEST_EXIT_DBG(ndof <= MAX_DOF)
("ndof too big: ndof=%d, MAX_DOF=%d\n", ndof, MAX_DOF); ("ndof too big: ndof = %d, MAX_DOF = %d\n", ndof, MAX_DOF);
for (int i = 0; i < static_cast<int>(admin.size()); i++) { for (int i = 0; i < static_cast<int>(admin.size()); i++) {
DOFAdmin *localAdmin = admin[i]; DOFAdmin *localAdmin = admin[i];
......
AMDiS/src/Mesh.h
View file @ 7e6ca7d1
...@@ -686,10 +686,13 @@ namespace AMDiS { ...@@ -686,10 +686,13 @@ namespace AMDiS {
Parametric *parametric; Parametric *parametric;
/** \brief /** \brief
* If the value is non zero then preserve all DOFs on all levels (can * When an element is refined, not all dofs of the coarse element must be
* be used for multigrid, e.g.); otherwise all DOFs on the parent that are * part of the new elements. An example are centered dofs when using higher
* not handed over to a child are removed during refinement and added again * lagrange basis functions. The midpoint dof of the parents element is not
* on the parent during coarsening. * a dof of the both children elements. Therefore, the dof can be deleted. In
* some situation, e.g., when using multigrid techniques, it can be necessary to
* store this coarse dofs. Then this variable must be set to true. If false, the
* not required coarse dofs will be deleted.
*/ */
bool preserveCoarseDOFs; bool preserveCoarseDOFs;
......
AMDiS/src/ParallelDomainBase.cc
View file @ 7e6ca7d1
...@@ -97,17 +97,17 @@ namespace AMDiS { ...@@ -97,17 +97,17 @@ namespace AMDiS {
// === Create new global and local DOF numbering. === // === Create new global and local DOF numbering. ===
// Set of all DOFs of the rank. // Set of all DOFs of the rank.
std::vector<const DegreeOfFreedom*> rankDOFs; std::vector<const DegreeOfFreedom*> rankDofs;
// Number of DOFs in ranks partition that are owned by the rank. // Number of DOFs in ranks partition that are owned by the rank.
nRankDofs = 0; nRankDofs = 0;
// Number of all DOFs in the macro mesh. // Number of all DOFs in the macro mesh.
int nOverallDOFs = 0; int nOverallDOFs = 0;
createLocalGlobalNumbering(rankDOFs, nRankDofs, nOverallDOFs); createLocalGlobalNumbering(rankDofs, nRankDofs, nOverallDOFs);
// === Create interior boundary information === // === Create interior boundary information ===
createInteriorBoundaryInfo(rankDOFs); createInteriorBoundaryInfo(rankDofs);
// === Remove all macro elements that are not part of the rank partition. === // === Remove all macro elements that are not part of the rank partition. ===
...@@ -809,7 +809,7 @@ namespace AMDiS { ...@@ -809,7 +809,7 @@ namespace AMDiS {
} }
void ParallelDomainBase::createInteriorBoundaryInfo(DofContainer& rankDOFs) void ParallelDomainBase::createInteriorBoundaryInfo(DofContainer& rankDofs)
{ {
FUNCNAME("ParallelDomainBase::createInteriorBoundaryInfo()"); FUNCNAME("ParallelDomainBase::createInteriorBoundaryInfo()");
...@@ -957,7 +957,7 @@ namespace AMDiS { ...@@ -957,7 +957,7 @@ namespace AMDiS {
} }
void ParallelDomainBase::createLocalGlobalNumbering(DofContainer& rankDOFs, void ParallelDomainBase::createLocalGlobalNumbering(DofContainer& rankDofs,
int& nRankDofs, int& nRankDofs,
int& nOverallDOFs) int& nOverallDOFs)
{ {
...@@ -970,9 +970,9 @@ namespace AMDiS { ...@@ -970,9 +970,9 @@ namespace AMDiS {
DofContainer rankAllDofs; DofContainer rankAllDofs;
DofToRank boundaryDofs; DofToRank boundaryDofs;