Make periodic boundaries working also for parallel domain problems.

AMDiS/src/ParallelDomainBase.h

@@ -93,7 +93,7 @@ namespace AMDiS {
 
     virtual void initParallelization(AdaptInfo *adaptInfo);
 
-    void exitParallelization(AdaptInfo *adaptInfo);
+    virtual void exitParallelization(AdaptInfo *adaptInfo);
 
     void updateDofAdmins();    
 
@@ -194,7 +194,7 @@ namespace AMDiS {
      * Determine the interior boundaries, i.e. boundaries between ranks, and store
      * all information about them in \ref interiorBoundary.
      */
-    void createInteriorBoundaryInfo(DofContainer& rankDOFs);
+    void createInteriorBoundaryInfo();
 
     /// Removes all macro elements from the mesh that are not part of ranks partition.
     void removeMacroElements();
@@ -276,9 +276,15 @@ namespace AMDiS {
 			     DofToRank& boundaryDofs,
 			     DofToBool& vertexDof);
 
+    /** \brief
+     * Takes a dof matrix and sends the values to the global petsc matrix.
+     */
     void setDofMatrix(DOFMatrix* mat, int dispMult = 1, 
 		      int dispAddRow = 0, int dispAddCol = 0);
 
+    /** \brief
+     * Takes a dof vector and sends its values to a given petsc vector.
+     */
     void setDofVector(Vec& petscVec, DOFVector<double>* vec, 
 		      int disMult = 1, int dispAdd = 0);
 
@@ -299,6 +305,22 @@ namespace AMDiS {
      */
     void DbgTestCommonDofs(bool printCoords = false);
 
+    /** \brief
+     * This function is used for debugging only. It prints all information from
+     * the local to global dof mapping, see \ref mapLocalGlobalDOFs.
+     *
+     * \param  rank  If specified, only the information from the given rank is printed.
+     */
+    void writeMapLocalGlobal(int rank = -1);
+
+    /** \brief
+     * This function is used for debugging only. It prints all information about
+     * the periodic mapping of dofs, that are on periodic boundaries.
+     *
+     * \param  rank  If specified, only the information from the given rank is printed.
+     */
+    void writeMapPeriodic(int rank = -1);
+
     /** \brief
      * This functions create a Paraview file with the macro mesh where the elements
      * are colored by the partition they are part of. This function can be used for
@@ -397,6 +419,14 @@ namespace AMDiS {
 	vec[1] = dof3;
     }
 
+    inline void printColValues(int row,
+			       std::vector<int>& cols,
+			       std::vector<double>& values)
+    {
+      for (int i = 0; i < static_cast<int>(cols.size()); i++)
+	std::cout << "Mat[" << row  << "][" << cols[i] << "] = " << values[i] << "\n";
+    }
+
   protected:
     ///
     ProblemIterationInterface *iterationIF;

AMDiS/src/ParallelDomainVec.cc

@@ -85,6 +85,11 @@ namespace AMDiS {
     }
   }
 
+  void ParallelDomainVec::exitParallelization(AdaptInfo *adaptInfo)
+  {
+    ParallelDomainBase::exitParallelization(adaptInfo);
+  }
+
 
   void ParallelDomainVec::solve()
   {

AMDiS/src/ParallelDomainVec.h

@@ -36,6 +36,8 @@ namespace AMDiS {
 
     void initParallelization(AdaptInfo *adaptInfo);
 
+    void exitParallelization(AdaptInfo *adaptInfo);
+
     virtual void solveInitialProblem(AdaptInfo *adaptInfo)
     {
       ParallelDomainBase::solveInitialProblem(adaptInfo);