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amdis
Commit 91522c81 authored by Naumann, Andreas's avatar Naumann, Andreas
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removed old demos

parent eb6e0d38
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demo/CMakeLists.txt
View file @ 91522c81
......@@ -11,38 +11,9 @@ if(AMDiS_FOUND)
SET(BASIS_LIBS ${AMDiS_LIBRARIES})
endif(AMDiS_FOUND)
option(USE_PARALLEL "check if the parallel demo are also used" false)
#option(USE_OPENMP "check if amdis is compiled with openmp" false)
if(USE_PARALLEL)
#Message("look for mpi package")
find_package(MPI REQUIRED)
# if(NOT MPI_FOUND)
# Message(ERROR_FATAL "Mpi not found")
# endif(NOT MPI_FOUND)
INCLUDE(CMakeForceCompiler)
CMAKE_FORCE_CXX_COMPILER(mpicxx "MPI C++ Compiler")
CMAKE_FORCE_C_COMPILER(mpicc "MPI C Compiler")
SET(PARALLEL_ELLIPT_SRC src/parallelellipt.cc)
SET(PARALLEL_HEAT_SRC src/parallelheat.cc)
add_executable(parallelellipt ${PARALLEL_ELLIPT_SRC})
add_executable(parallelheat ${PARALLEL_HEAT_SRC})
target_link_libraries(parallelellipt ${BASIS_LIBS})
target_link_libraries(parallelheat ${BASIS_LIBS})
endif(USE_PARALLEL)
set(DONTBUILD "couple" "parallelellipt" "parallelheat")
file(GLOB sources src/*.cc)
foreach(s ${sources})
get_filename_component(swe ${s} NAME_WE)
list(FIND DONTBUILD ${swe} DBUILD)
if( ${DBUILD} EQUAL -1 )
add_executable(${swe} ${s})
target_link_libraries(${swe} ${BASIS_LIBS})
endif()
add_executable(${swe} ${s})
target_link_libraries(${swe} ${BASIS_LIBS})
endforeach(s)
demo/Makefile
View file @ 91522c81
......@@ -96,27 +96,6 @@ PERIODIC_OFILES = periodic.o
periodic: $(PERIODIC_OFILES)
$(LINK) $(CPPFLAGS) $(LDFLAGS) -o periodic $(INCLUDES) $(PERIODIC_OFILES) $(LIBS)
# ===== parallelellipt =======================================================
PARALLELELLIPT_OFILES = parallelellipt.o
parallelellipt: $(PARALLELELLIPT_OFILES)
$(LINK) $(CPPFLAGS) -o parallelellipt $(PARALLELELLIPT_OFILES) $(LIBS) $(PARMETIS_LIB)
# ===== parallelheat =======================================================
PARALLELHEAT_OFILES = parallelheat.o
parallelheat: $(PARALLELHEAT_OFILES)
$(LINK) $(CPPFLAGS) -o parallelheat $(PARALLELHEAT_OFILES) $(LIBS) $(PARMETIS_LIB)
# ===== couple ============================================================
COUPLE_OFILES = couple.o
couple: $(COUPLE_OFILES)
$(LINK) $(CPPFLAGS) -o couple $(COUPLE_OFILES) $(LIBS)
# ===== neumann ============================================================
NEUMANN_OFILES = neumann.o
......
demo/Makefile_libtool
View file @ 91522c81
......@@ -96,27 +96,6 @@ PERIODIC_OFILES = periodic.o
periodic: $(PERIODIC_OFILES)
$(LINK) $(CPPFLAGS) $(LDFLAGS) -o periodic $(INCLUDES) $(PERIODIC_OFILES) $(LIBS)
# ===== parallelellipt =======================================================
PARALLELELLIPT_OFILES = parallelellipt.o
parallelellipt: $(PARALLELELLIPT_OFILES)
$(LINK) $(CPPFLAGS) -o parallelellipt $(PARALLELELLIPT_OFILES) $(LIBS) $(PARMETIS_LIB)
# ===== parallelheat =======================================================
PARALLELHEAT_OFILES = parallelheat.o
parallelheat: $(PARALLELHEAT_OFILES)
$(LINK) $(CPPFLAGS) -o parallelheat $(PARALLELHEAT_OFILES) $(LIBS) $(PARMETIS_LIB)
# ===== couple ============================================================
COUPLE_OFILES = couple.o
couple: $(COUPLE_OFILES)
$(LINK) $(CPPFLAGS) -o couple $(COUPLE_OFILES) $(LIBS)
# ===== neumann ============================================================
NEUMANN_OFILES = neumann.o
......
demo/src/couple.cc deleted 100644 → 0
View file @ eb6e0d38
#include "AMDiS.h"
using namespace std;
using namespace AMDiS;
class G : public AbstractFunction<double, WorldVector<double> >
{
public:
double operator()(const WorldVector<double>& x) const
{
return exp(-10.0 * (x * x));
}
};
class F : public AbstractFunction<double, WorldVector<double> >
{
public:
F(int degree) : AbstractFunction<double, WorldVector<double> >(degree) {}
double operator()(const WorldVector<double>& x) const
{
int dow = x.getSize();
double r2 = (x * x);
double ux = exp(-10.0 * r2);
return -(400.0 * r2 - 20.0 * dow) * ux;
}
};
class MyCoupledIteration : public ProblemIterationInterface
{
public:
MyCoupledIteration(ProblemStatBase *prob1,
ProblemStatBase *prob2)
: problem1(prob1),
problem2(prob2),
name("MyCoupledIteration")
{}
void beginIteration(AdaptInfo *adaptInfo)
{
FUNCNAME("StandardProblemIteration::beginIteration()");
MSG("\n");
MSG("begin of iteration number: %d\n", adaptInfo->getSpaceIteration()+1);
MSG("=============================\n");
}
void endIteration(AdaptInfo *adaptInfo) {
FUNCNAME("StandardProblemIteration::endIteration()");
MSG("\n");
MSG("end of iteration number: %d\n", adaptInfo->getSpaceIteration()+1);
MSG("=============================\n");
}
Flag oneIteration(AdaptInfo *adaptInfo, Flag toDo = FULL_ITERATION)
{
Flag flag, markFlag;
if(toDo.isSet(MARK)) markFlag = problem1->markElements(adaptInfo);
if(toDo.isSet(ADAPT) && markFlag.isSet(MESH_REFINED)) flag = problem1->refineMesh(adaptInfo);
if(toDo.isSet(BUILD)) problem1->buildAfterCoarsen(adaptInfo, markFlag);
if(toDo.isSet(SOLVE)) problem1->solve(adaptInfo);
if(toDo.isSet(BUILD)) problem2->buildAfterCoarsen(adaptInfo, markFlag);
if(toDo.isSet(SOLVE)) problem2->solve(adaptInfo);
if(toDo.isSet(ESTIMATE)) problem1->estimate(adaptInfo);
return flag;
}
int getNumProblems()
{
return 2;
}
ProblemStatBase *getProblem(int number = 0)
{
FUNCNAME("CoupledIteration::getProblem()");
if (number == 0)
return problem1;
if (number == 1)
return problem2;
ERROR_EXIT("invalid problem number\n");
return NULL;
}
const std::string& getName()
{
return name;
}
void serialize(std::ostream&)
{}
void deserialize(std::istream&)
{}
private:
ProblemStatBase *problem1;
ProblemStatBase *problem2;
std::string name;
};
class Identity : public AbstractFunction<double, double>
{
public:
Identity(int degree) : AbstractFunction<double, double>(degree) {}
double operator()(const double& x) const
{
return x;
}
};
int main(int argc, char* argv[])
{
FUNCNAME("main");
TEST_EXIT(argc == 2)("usage: couple initfile\n");
Parameters::init(true, argv[1]);
// ===== create and init the first problem =====
ProblemScal problem1("problem1");
problem1.initialize(INIT_ALL);
// ===== create and init the second problem =====
Flag initFlag =
INIT_FE_SPACE |
INIT_SYSTEM |
INIT_SOLVER |
INIT_FILEWRITER;
Flag adoptFlag =
CREATE_MESH |
INIT_MESH;
ProblemScal problem2("problem2");
problem2.initialize(initFlag,
&problem1,
adoptFlag);
// ===== create operators for problem1 =====
Operator matrixOperator1(problem1.getFeSpace());
matrixOperator1.addSecondOrderTerm(new Laplace_SOT);
problem1.addMatrixOperator(&matrixOperator1);
int degree = problem1.getFeSpace()->getBasisFcts()->getDegree();
Operator rhsOperator1(problem1.getFeSpace());
rhsOperator1.addZeroOrderTerm(new CoordsAtQP_ZOT(new F(degree)));
problem1.addVectorOperator(&rhsOperator1);
// ===== create operators for problem2 =====
Operator matrixOperator2(problem2.getFeSpace());
matrixOperator2.addZeroOrderTerm(new Simple_ZOT);
problem2.addMatrixOperator(&matrixOperator2);
Operator rhsOperator2(problem2.getFeSpace());
rhsOperator2.addZeroOrderTerm(new VecAtQP_ZOT(problem1.getSolution(),
new Identity(degree)));
problem2.addVectorOperator(&rhsOperator2);
// ===== add boundary conditions for problem1 =====
problem1.addDirichletBC(1, new G);
// ===== add boundary conditions for problem1 =====
//problem2.addDirichletBC(1, new G);
// ===== create adaptation loop and iteration interface =====
AdaptInfo *adaptInfo = new AdaptInfo("couple->adapt", 1);
MyCoupledIteration coupledIteration(&problem1, &problem2);
AdaptStationary *adapt = new AdaptStationary("couple->adapt",
&coupledIteration,
adaptInfo);
// ===== start adaptation loop =====
adapt->adapt();
// ===== write solution =====
problem1.writeFiles(adaptInfo, true);
problem2.writeFiles(adaptInfo, true);
}
demo/src/parallelellipt.cc deleted 100644 → 0
View file @ eb6e0d38
#include "AMDiS.h"
#include "mpi.h"
#include "ParallelProblem.h"
using namespace std;
using namespace AMDiS;
/// Dirichlet boundary function
class G : public AbstractFunction<double, WorldVector<double> >
{
public:
/// Implementation of AbstractFunction::operator().
double operator()(const WorldVector<double>& x) const
{
return exp(-10.0*(x*x));
}
};
class GrdG : public AbstractFunction<WorldVector<double>, WorldVector<double> >
{
/// Implementation of AbstractFunction::operator().
WorldVector<double> operator()(const WorldVector<double>& x) const
{
return x * -20.0 * exp(-10.0*(x*x));
}
};
/// RHS function
class F : public AbstractFunction<double, WorldVector<double> >
{
public:
F(int degree) : AbstractFunction<double, WorldVector<double> >(degree) {}
/// Implementation of AbstractFunction::operator().
double operator()(const WorldVector<double>& x) const
{
int dim = x.getSize();
double r2 = (x*x);
double ux = exp(-10.0*r2);
return -(400.0*r2 - 20.0*dim)*ux;
}
};
// ===== main program =====
int main(int argc, char* argv[])
{
MPI::Init(argc, argv);
FUNCNAME("main");
// ===== check for init file =====
TEST_EXIT(argc >= 2)("usage: ellipt initfile\n");
// ===== init parameters =====
Parameters::init(false, argv[1]);
// ===== create and init the scalar problem =====
ProblemScal ellipt("ellipt");
ellipt.initialize(INIT_ALL);
// === parallel problem ===
std::vector<DOFVector<double>*> vectors;
ParallelProblemScal parallelellipt("ellipt->parallel", &ellipt, NULL, vectors);
// === create adapt info ===
AdaptInfo *adaptInfo = new AdaptInfo("ellipt->adapt", 1);
// === create adapt ===
AdaptStationary *adapt = new AdaptStationary("ellipt->adapt",
&parallelellipt,
adaptInfo);
// ===== create matrix operator =====
Operator matrixOperator(ellipt.getFeSpace());
matrixOperator.addSecondOrderTerm(new Laplace_SOT);
ellipt.addMatrixOperator(&matrixOperator);
// ===== create rhs operator =====
int degree = ellipt.getFeSpace()->getBasisFcts()->getDegree();
Operator rhsOperator(ellipt.getFeSpace());
rhsOperator.addZeroOrderTerm(new CoordsAtQP_ZOT(new F(degree)));
ellipt.addVectorOperator(&rhsOperator);
// ===== add boundary conditions =====
ellipt.addDirichletBC(1, new G);
parallelellipt.initParallelization(adaptInfo);
adapt->adapt();
parallelellipt.exitParallelization(adaptInfo);
MPI::Finalize();
}
demo/src/parallelheat.cc deleted 100644 → 0
View file @ eb6e0d38
#include "AMDiS.h"
#include "ParallelProblem.h"
#include "mpi.h"
using namespace std;
using namespace AMDiS;
// ===========================================================================
// ===== function definitions ================================================
// ===========================================================================
/// Dirichlet boundary function
class G : public AbstractFunction<double, WorldVector<double> >,
public TimedObject
{
public:
/// Implementation of AbstractFunction::operator().
double operator()(const WorldVector<double>& argX) const
{
WorldVector<double> x = argX;
int dim = x.getSize();
for (int i = 0; i < dim; i++)
x[i] -= *timePtr;
return sin(M_PI*(*timePtr)) * exp(-10.0*(x*x));
}
}
/// RHS function
class F : public AbstractFunction<double, WorldVector<double> >,
public TimedObject
{
public:
F(int degree) : AbstractFunction<double, WorldVector<double> >(degree) {}
/// Implementation of AbstractFunction::operator().
double operator()(const WorldVector<double>& argX) const
{
WorldVector<double> x = argX;
int dim = x.getSize();
for (int i = 0; i < dim; i++)
x[i] -= *timePtr;
double r2 = (x*x);
double ux = sin(M_PI * (*timePtr)) * exp(-10.0*r2);
double ut = M_PI * cos(M_PI*(*timePtr)) * exp(-10.0*r2);
return ut -(400.0*r2 - 20.0*dim)*ux;
}
};
// ===========================================================================
// ===== instationary problem ================================================
// ===========================================================================
/// Instationary problem
class Heat : public ProblemInstatScal
{
public:
/// Constructor
Heat(ProblemScal *heatSpace)
: ProblemInstatScal("heat", heatSpace)
{}
// ===== ProblemInstatBase methods ===================================
/// set the time in all needed functions!
void setTime(AdaptInfo *adaptInfo)
{
time = adaptInfo->getTime();
tau1 = 1.0 / adaptInfo->getTimestep();
}
// ===== initial problem methods =====================================
/// Used by \ref problemInitial to solve the system of the initial problem
void solve(AdaptInfo *adaptInfo)
{
problemStat->getMesh()->dofCompress();
time = adaptInfo->getStartTime();
problemStat->getSolution()->interpol(boundaryFct);
}
/// Used by \ref problemInitial to do error estimation for the initial problem.
void estimate(AdaptInfo *adaptInfo)
{
double errMax, errSum;
time = adaptInfo->getStartTime();
errSum = Error<double>::L2Err(*boundaryFct,
*(problemStat->getSolution()), 0, &errMax, false);
adaptInfo->setEstSum(errSum, 0);
}
// ===== setting methods ===============================================
/// Sets \ref boundaryFct;
void setBoundaryFct(AbstractFunction<double, WorldVector<double> > *fct)
{
boundaryFct = fct;
}
// ===== getting methods ===============================================
/// Returns pointer to \ref tau1
double *getTau1Ptr()
{
return &tau1;
}
/// Returns pointer to \ref time.
double *getTimePtr()
{
return &time;
}
/// Returns \ref boundaryFct;
AbstractFunction<double, WorldVector<double> > *getBoundaryFct()
{
return boundaryFct;
}
// void closeTimestep(AdaptInfo *adaptInfo) {
// ParallelProblem::writeRankMacroAndValues(problemStat->getSolution(),
// "output/debug_rank",
// adaptInfo->getTime());
// };
private:
/// 1.0 / timestep
double tau1;
/// time
double time;
/// Pointer to boundary function. Needed for initial problem.
AbstractFunction<double, WorldVector<double> > *boundaryFct;
};
// ===========================================================================
// ===== main program ========================================================
// ===========================================================================
int main(int argc, char** argv)
{
MPI::Init(argc, argv);
// ===== check for init file =====
TEST_EXIT(argc >= 2)("usage: heat initfile\n");
// ===== init parameters =====
Parameters::init(false, argv[1]);
// ===== create and init stationary problem =====
ProblemScal *heatSpace = new ProblemScal("heat->space");
heatSpace->initialize(INIT_ALL);
// ===== create instationary problem =====
Heat *heat = new Heat(heatSpace);
heat->initialize(INIT_ALL);
// create adapt info
AdaptInfo *adaptInfo = new AdaptInfo("heat->adapt");
// create initial adapt info
AdaptInfo *adaptInfoInitial = new AdaptInfo("heat->initial->adapt");
// create parallel problem
std::vector<DOFVector<double>*> vectors;
ParallelProblemScal parallelheat("heat->parallel", heatSpace, heat, vectors);
// create instationary adapt
AdaptInstationary *adaptInstat =
new AdaptInstationary("heat->adapt",
&parallelheat,
adaptInfo,
&parallelheat,
adaptInfoInitial);
// ===== create rhs functions =====
int degree = heatSpace->getFeSpace()->getBasisFcts()->getDegree();
F *rhsFct = new F(degree);
rhsFct->setTimePtr(heat->getTimePtr());
// ===== create operators =====
double one = 1.0;
double zero = 0.0;
// create laplace
Operator *A = new Operator(heatSpace->getFeSpace());
A->addSecondOrderTerm(new Laplace_SOT);
A->setUhOld(heat->getOldSolution());
heatSpace->addMatrixOperator(A, &one, &one);
// create zero order operator
Operator *C = new Operator(heatSpace->getFeSpace());
C->addZeroOrderTerm(new Simple_ZOT);
C->setUhOld(heat->getOldSolution());
heatSpace->addMatrixOperator(C, heat->getTau1Ptr(), heat->getTau1Ptr());
heatSpace->addVectorOperator(C, heat->getTau1Ptr(), heat->getTau1Ptr());
// create RHS operator
Operator *F = new Operator(heatSpace->getFeSpace());
F->addZeroOrderTerm(new CoordsAtQP_ZOT(rhsFct));
heatSpace->addVectorOperator(F);
// ===== create boundary functions =====
G *boundaryFct = new G;
boundaryFct->setTimePtr(heat->getTimePtr());
heat->setBoundaryFct(boundaryFct);
heatSpace->addDirichletBC(DIRICHLET, boundaryFct);
// // ===== start adaption loop =====
parallelheat.initParallelization(adaptInfo);
adaptInstat->adapt();
parallelheat.exitParallelization(adaptInfo);
MPI::Finalize();
}
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