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Commit bb580238 authored by Thomas Witkowski's avatar Thomas Witkowski
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* Output support for higher order Lagrange Elements

parent a12fef07
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Showing with 388 additions and 409 deletions
AMDiS/src/DataCollector.cc
View file @ bb580238
......@@ -116,6 +116,7 @@ namespace AMDiS {
elInfo = stack.traverseNext(elInfo);
}
// Remove all interpolation marks and, instead, set to each
// interpolation point its continous index starting from 0.
int i = 0;
......@@ -126,7 +127,8 @@ namespace AMDiS {
}
// Traverse elements to create interpolation values.
elInfo = stack.traverseFirst(mesh_, level_, traverseFlag_);
counter = 0;
elInfo = stack.traverseFirst(mesh_, level_, traverseFlag_ | Mesh::FILL_COORDS);
while (elInfo) {
if (!writeElem_ || writeElem_(elInfo))
addInterpData(elInfo);
......@@ -268,102 +270,73 @@ namespace AMDiS {
{
FUNCNAME("DataCollector::addValueData()");
const DegreeOfFreedom **dof = elInfo->getElement()->getDOF();
/* vertex dofs */
int dof_offset = localAdmin_->getNumberOfPreDOFs(VERTEX);
const BasisFunction *basisFcts = feSpace_->getBasisFcts();
const DegreeOfFreedom *localDOFs = basisFcts->getLocalIndices(elInfo->getElement(), localAdmin_, NULL);
const int nBasisFcts = basisFcts->getNumber();
for (int i = 0; i < mesh_->getGeo(VERTEX); i++) {
(*interpPointInd_)[dof[i][dof_offset]] = -2; // mark as vertex
(*interpPointInd_)[localDOFs[i]] = -2; // mark as vertex
// get coords of this vertex
WorldVector<double> vertexCoords = elInfo->getCoord(i);
// search for coords at this dof
::std::list<WorldVector<double> >::iterator it =
find((*dofCoords_)[dof[i][dof_offset]].begin(),
(*dofCoords_)[dof[i][dof_offset]].end(),
find((*dofCoords_)[localDOFs[i]].begin(),
(*dofCoords_)[localDOFs[i]].end(),
vertexCoords);
// coords not yet in list?
if (it == (*dofCoords_)[dof[i][dof_offset]].end()) {
if (it == (*dofCoords_)[localDOFs[i]].end()) {
// add new coords to list
(*dofCoords_)[dof[i][dof_offset]].push_back(vertexCoords);
(*dofCoords_)[localDOFs[i]].push_back(vertexCoords);
}
}
int nInterpPoints = 0;
const BasisFunction *basisFcts = feSpace_->getBasisFcts();
for (int i = 1; i <= dim_; i++) {
int num_dofs = localAdmin_->getNumberOfDOFs(INDEX_OF_DIM(i, dim_));
int node_offset = mesh_->getNode(INDEX_OF_DIM(i, dim_));
dof_offset = localAdmin_->getNumberOfPreDOFs(INDEX_OF_DIM(i, dim_));
for (int j = 0; j < mesh_->getGeo(INDEX_OF_DIM(i, dim_)); j++) {
int node = node_offset + j;
for (int k = 0; k < num_dofs; k++) {
int dof_index = dof_offset + k;
WorldVector<double> interpolCoords;
elInfo->coordToWorld((*basisFcts->getCoords(mesh_->getGeo(VERTEX) + nInterpPoints)),
&interpolCoords);
nInterpPoints++;
if ((*interpPointInd_)[dof[node][dof_index]] == -1) {
// mark as interpolation point
(*interpPointInd_)[dof[node][dof_index]] = -3;
// search for interpolation point coordinates, and insert them to the
// dof-entry, if not contained in the list
::std::list<WorldVector<double> >::iterator it =
find((*interpPointCoords_)[dof[node][dof_index]].begin(),
(*interpPointCoords_)[dof[node][dof_index]].end(),
for (int i = mesh_->getGeo(VERTEX); i < nBasisFcts; i++) {
WorldVector<double> interpolCoords;
elInfo->coordToWorld(*basisFcts->getCoords(i), &interpolCoords);
if ((*interpPointInd_)[localDOFs[i]] == -1) {
// mark as interpolation point
(*interpPointInd_)[localDOFs[i]] = -3;
// search for interpolation point coordinates, and insert them to the
// dof-entry, if not contained in the list
::std::list<WorldVector<double> >::iterator it =
find((*interpPointCoords_)[localDOFs[i]].begin(),
(*interpPointCoords_)[localDOFs[i]].end(),
interpolCoords);
if (it == (*interpPointCoords_)[dof[node][dof_index]].end()) {
(*interpPointCoords_)[dof[node][dof_index]].push_back(interpolCoords);
}
nInterpPoints_++;
}
if (it == (*interpPointCoords_)[localDOFs[i]].end()) {
(*interpPointCoords_)[localDOFs[i]].push_back(interpolCoords);
nInterpPoints_++;
}
}
}
}
return(0);
}
int DataCollector::addInterpData(ElInfo *elInfo)
{
FUNCNAME("DataCollector::addInterpData()");
const DegreeOfFreedom **dof = elInfo->getElement()->getDOF();
::std::vector<int> elemInterpPoints;
elemInterpPoints.clear();
for (int i = 1; i <= dim_; i++) {
int num_dofs = localAdmin_->getNumberOfDOFs(INDEX_OF_DIM(i, dim_));
int node_offset = mesh_->getNode(INDEX_OF_DIM(i, dim_));
int dof_offset = localAdmin_->getNumberOfPreDOFs(INDEX_OF_DIM(i, dim_));
for (int j = 0; j < mesh_->getGeo(INDEX_OF_DIM(i, dim_)); j++) {
int node = node_offset + j;
const BasisFunction *basisFcts = feSpace_->getBasisFcts();
const DegreeOfFreedom *localDOFs = basisFcts->getLocalIndices(elInfo->getElement(), localAdmin_, NULL);
const int nBasisFcts = basisFcts->getNumber();
for (int k = 0; k < num_dofs; k++) {
int dof_index = dof_offset + k;
elemInterpPoints.push_back((*interpPointInd_)[dof[node][dof_index]]);
}
}
for (int i = mesh_->getGeo(VERTEX); i < nBasisFcts; i++) {
elemInterpPoints.push_back((*interpPointInd_)[localDOFs[i]]);
}
interpPoints_.push_back(elemInterpPoints);
return(0);
}
......
AMDiS/src/DataCollector.h
View file @ bb580238
......@@ -294,6 +294,8 @@ namespace AMDiS {
* Pointer to a function which decides whether an element is considered.
*/
bool (*writeElem_)(ElInfo*);
int counter;
};
}
......
AMDiS/src/Element.cc
View file @ bb580238
......@@ -12,8 +12,11 @@ namespace AMDiS {
{
ElementRegion_ED* red_;
if (!elementData) return -1;
red_=dynamic_cast<ElementRegion_ED*>(elementData->getElementData(ELEMENT_REGION));
if (!elementData)
return -1;
red_ = dynamic_cast<ElementRegion_ED*>(elementData->getElementData(ELEMENT_REGION));
if (red_)
return red_->getRegion();
......@@ -22,8 +25,9 @@ namespace AMDiS {
void Element::setDOFPtrs()
{
FUNCNAME("Element::setDOFPtrs");
FUNCNAME("Element::setDOFPtrs()");
TEST_EXIT(mesh)("no mesh!\n");
dof = mesh->createDOFPtrs();
}
......@@ -33,27 +37,30 @@ namespace AMDiS {
index = mesh ? mesh->getNextElementIndex() : -1;
child[0] = NULL;
child[1] = NULL;
child[0] = NULL;
child[1] = NULL;
dof = mesh ? mesh->createDOFPtrs() : NULL;
newCoord = NULL;
elementData = NULL;
if (mesh) {
setDOFPtrs();
} else {
mesh = NULL;
}
}
// call destructor through Mesh::freeElement !!!
Element::~Element()
{
if(child[0]) DELETE child[0];
if(child[1]) DELETE child[1];
//if(elementData) DELETE elementData;
if (child[0])
DELETE child[0];
if (child[1])
DELETE child[1];
if (newCoord)
{
DELETE newCoord;
}
if (newCoord) {
DELETE newCoord;
}
}
/****************************************************************************/
......@@ -65,7 +72,7 @@ namespace AMDiS {
/* CHANGE_DOFS_1 changes old dofs to NEGATIVE new dofs */
#define CHANGE_DOFS_1(el) \
ldof = el->dof[n0+i] + nd0; \
ldof = el->dof[n0 + i] + nd0; \
for (j = 0; j < nd; j++) { \
if ((k = ldof[j]) >= 0) { \
/* do it only once! (dofs are visited more than once) */ \
......@@ -99,7 +106,7 @@ namespace AMDiS {
}
}
if(mesh->getDim() > 1) {
if (mesh->getDim() > 1) {
if ((nd = admin->getNumberOfDOFs(EDGE))) {
nd0 = admin->getNumberOfPreDOFs(EDGE);
n0 = admin->getMesh()->getNode(EDGE);
......@@ -109,7 +116,7 @@ namespace AMDiS {
}
}
if (3==mesh->getDim()) {
if (mesh->getDim() == 3) {
if ((nd = admin->getNumberOfDOFs(FACE))) {
nd0 = admin->getNumberOfPreDOFs(FACE);
n0 = admin->getMesh()->getNode(FACE);
......@@ -145,7 +152,7 @@ namespace AMDiS {
}
}
if(mesh->getDim() > 1) {
if (mesh->getDim() > 1) {
if ((nd = admin->getNumberOfDOFs(EDGE))) {
nd0 = admin->getNumberOfPreDOFs(EDGE);
n0 = admin->getMesh()->getNode(EDGE);
......@@ -155,7 +162,7 @@ namespace AMDiS {
}
}
if (3==mesh->getDim()) {
if (mesh->getDim() == 3) {
if ((nd = admin->getNumberOfDOFs(FACE))) {
nd0 = admin->getNumberOfPreDOFs(FACE);
n0 = admin->getMesh()->getNode(FACE);
......@@ -183,30 +190,30 @@ namespace AMDiS {
int Element::oppVertex(FixVec<DegreeOfFreedom*, DIMEN> pdof) const
{
int i, j, nv = 0, ov = 0;
int nv = 0, ov = 0;
int vertices = mesh->getGeo(VERTEX);
int dim = mesh->getDim();
for (i = 0; i < vertices; i++)
{
if (nv < i-1) return(-1);
for (j = 0; j < dim; j++)
{
if (dof[i] == pdof[j])
{
/****************************************************************************/
/* i is a common vertex */
/****************************************************************************/
ov += i;
nv++;
break;
}
}
for (int i = 0; i < vertices; i++) {
if (nv < i-1)
return(-1);
for (int j = 0; j < dim; j++) {
if (dof[i] == pdof[j]) {
/****************************************************************************/
/* i is a common vertex */
/****************************************************************************/
ov += i;
nv++;
break;
}
}
if (nv != mesh->getDim()) return(-1);
}
if (nv != mesh->getDim())
return(-1);
/****************************************************************************/
/* the opposite vertex is 3(6) - (sum of indices of common vertices) in */
/* 2d(3d) */
......@@ -243,7 +250,7 @@ namespace AMDiS {
newCoord=NULL;
};
}
void Element::serialize(::std::ostream &out)
{
// write children
......
AMDiS/src/Element.h
View file @ bb580238
......@@ -305,9 +305,9 @@ namespace AMDiS {
/** \brief
* Sets the pointer to the DOFs of the i-th node of Element
*/
DegreeOfFreedom* setDOF(int i, DegreeOfFreedom* p) {
dof[i] = p;
return dof[i];
DegreeOfFreedom* setDOF(int pos, DegreeOfFreedom* p) {
dof[pos] = p;
return dof[pos];
};
/** \brief
......
AMDiS/src/Lagrange.cc
View file @ bb580238
......@@ -360,7 +360,9 @@ namespace AMDiS {
}
}
Lagrange::Phi::~Phi() { DELETE [] vertices; }
Lagrange::Phi::~Phi() {
DELETE [] vertices;
}
Lagrange::GrdPhi::GrdPhi(Lagrange* owner_,
......@@ -1003,16 +1005,17 @@ namespace AMDiS {
DegreeOfFreedom* result;
if(indices) {
if (indices) {
result = indices;
} else {
if(localVec) FREE_MEMORY(localVec, DegreeOfFreedom, localVecSize);
if (localVec)
FREE_MEMORY(localVec, DegreeOfFreedom, localVecSize);
localVec = GET_MEMORY(DegreeOfFreedom, nBasFcts);
localVecSize = nBasFcts;
result = localVec;
}
for(pos=0, j=0; pos <= dim; pos++) {
for (pos = 0, j = 0; pos <= dim; pos++) {
posIndex = INDEX_OF_DIM(pos, dim);
n0 = admin->getNumberOfPreDOFs(posIndex);
node0 = admin->getMesh()->getNode(posIndex);
......@@ -1032,33 +1035,6 @@ namespace AMDiS {
return result;
}
// const double* Lagrange::getVec(const Element* el, const DOFVector<double> * dv,
// double * d) const
// {
// static double* localVec = NULL;
// const DOFAdmin* admin = dv->getFESpace()->getAdmin();
// int i;
// double* result;
// if(d) {
// result = d;
// } else {
// if(localVec) FREE_MEMORY(localVec, double, nBasFcts);
// localVec = GET_MEMORY(double, nBasFcts);
// result = localVec;
// }
// const DegreeOfFreedom *localIndices = getLocalIndices(el, admin, NULL);
// for(i = 0; i < nBasFcts; i++) {
// result[i] = (*dv)[localIndices[i]];
// }
// return result;
// }
void Lagrange::l2ScpFctBas(Quadrature *q,
AbstractFunction<WorldVector<double>, WorldVector<double> >* f,
DOFVector<WorldVector<double> >* fh)
......@@ -1234,12 +1210,13 @@ namespace AMDiS {
RCNeighbourList* list,
int n, BasisFunction* basFct)
{
FUNCNAME("Lagrange::refineInter2_2d");
FUNCNAME("Lagrange::refineInter2_2d()");
if (n < 1) return;
if (n < 1)
return;
Element *el;
int node, n0;
Element *el;
int node, n0;
DegreeOfFreedom cdof;
const DegreeOfFreedom *pdof;
const DOFAdmin *admin = drv->getFESpace()->getAdmin();
......@@ -1267,7 +1244,7 @@ namespace AMDiS {
cdof = el->getChild(0)->getDOF(node, n0);
(*drv)[cdof] =
0.375*(*drv)[pdof[0]] - 0.125*(*drv)[pdof[1]] + 0.75*(*drv)[pdof[5]];
0.375 * (*drv)[pdof[0]] - 0.125 * (*drv)[pdof[1]] + 0.75 * (*drv)[pdof[5]];
/****************************************************************************/
/* node in the common edge of child[0] and child[1] */
......@@ -1275,8 +1252,8 @@ namespace AMDiS {
cdof = el->getChild(0)->getDOF(node+1, n0);
(*drv)[cdof] =
-0.125*((*drv)[pdof[0]] + (*drv)[pdof[1]]) + 0.25*(*drv)[pdof[5]]
+ 0.5*((*drv)[pdof[3]] + (*drv)[pdof[4]]);
-0.125 * ((*drv)[pdof[0]] + (*drv)[pdof[1]]) + 0.25 * (*drv)[pdof[5]]
+ 0.5 * ((*drv)[pdof[3]] + (*drv)[pdof[4]]);
/****************************************************************************/
/* midpoint of edge on child[1] at the refinement edge */
......@@ -1284,22 +1261,20 @@ namespace AMDiS {
cdof = el->getChild(1)->getDOF(node+1, n0);
(*drv)[cdof] =
-0.125*(*drv)[pdof[0]] + 0.375*(*drv)[pdof[1]] + 0.75*(*drv)[pdof[5]];
-0.125 * (*drv)[pdof[0]] + 0.375 * (*drv)[pdof[1]] + 0.75 * (*drv)[pdof[5]];
if (n > 1)
{
/****************************************************************************/
/* adjust the value at the midpoint of the common edge of neigh's children */
/****************************************************************************/
el = list->getElement(1);
pdof = basFct->getLocalIndices(el, admin, NULL);
cdof = el->getChild(0)->getDOF(node+1, n0);
(*drv)[cdof] =
-0.125*((*drv)[pdof[0]] + (*drv)[pdof[1]]) + 0.25*(*drv)[pdof[5]]
+ 0.5*((*drv)[pdof[3]] + (*drv)[pdof[4]]);
}
return;
if (n > 1) {
/****************************************************************************/
/* adjust the value at the midpoint of the common edge of neigh's children */
/****************************************************************************/
el = list->getElement(1);
pdof = basFct->getLocalIndices(el, admin, NULL);
cdof = el->getChild(0)->getDOF(node+1, n0);
(*drv)[cdof] =
-0.125 * ((*drv)[pdof[0]] + (*drv)[pdof[1]]) + 0.25 * (*drv)[pdof[5]]
+ 0.5 * ((*drv)[pdof[3]] + (*drv)[pdof[4]]);
}
}
void Lagrange::refineInter2_3d(DOFIndexed<double> *drv,
......
AMDiS/src/Lagrange.h
View file @ bb580238
......@@ -152,20 +152,6 @@ namespace AMDiS {
const DOFAdmin*,
DegreeOfFreedom*) const;
/** \brief
* Implements BasisFunction::getVec().
*/
// const double *getVec(const Element* el,
// const DOFVector<double> * dv,
// double * d) const;
/** \brief
* Implements BasisFunction::getVec
*/
// const WorldVector<double> *getVec(const Element* el,
// const DOFVector<WorldVector<double> > * dv,
// WorldVector<double> *d) const;
/** \brief
* Implements BasisFunction::l2ScpFctBas
*/
......
AMDiS/src/MacroReader.cc
View file @ bb580238
......@@ -133,16 +133,6 @@ namespace AMDiS {
element2->setElementData(ldp2);
}
// DimVec<DegreeOfFreedom> periodicDOFsEl1(dim-1, NO_INIT);
// DimVec<DegreeOfFreedom> periodicDOFsEl2(dim-1, NO_INIT);
// for(j = 0; j < dim; j++) {
// periodicDOFsEl1[element1->getPositionOfVertex(sideEl1, verticesEl1[j])] =
// melVertex[el2][vertexMapEl1[verticesEl1[j]]];
// periodicDOFsEl2[element2->getPositionOfVertex(sideEl2, verticesEl2[j])] =
// melVertex[el1][vertexMapEl2[verticesEl2[j]]];
// }
ldp1->addPeriodicInfo(mode,
boundaryType,
sideEl1,
......@@ -228,8 +218,9 @@ namespace AMDiS {
for (int i = 0; i < mesh->getNumberOfMacros(); i++) {
for (int k = 0; k < mesh->getGeo(VERTEX); k++) {
(*(mel + i))->setCoord(k, coords[melVertex[i][k]]);
const_cast<Element*>((*(mel+i))->getElement())->
setDOF(k,dof[melVertex[i][k]]);
setDOF(k, dof[melVertex[i][k]]);
}
}
......@@ -963,28 +954,18 @@ namespace AMDiS {
getElement()->
getDOF((k+l+1)%(dim+1)));
for (j = i+1; j < mesh->getNumberOfLeaves(); j++)
{
//MacroElement *mel0 = mesh->getMacroElement(i);
//Element *el = const_cast<Element*>(mel0->getElement());
//m = el->oppVertex(dof);
if ((m = mesh->getMacroElement(j)->getElement()->oppVertex(dof)) != -1)
{
mesh->getMacroElement(i)->setNeighbour(k, mesh->getMacroElement(j));
mesh->getMacroElement(j)->setNeighbour(m, mesh->getMacroElement(i));
mesh->getMacroElement(i)->setOppVertex(k, m);
mesh->getMacroElement(j)->setOppVertex(m, k);
break;
}
for (j = i + 1; j < mesh->getNumberOfLeaves(); j++) {
if ((m = mesh->getMacroElement(j)->getElement()->oppVertex(dof)) != -1) {
mesh->getMacroElement(i)->setNeighbour(k, mesh->getMacroElement(j));
mesh->getMacroElement(j)->setNeighbour(m, mesh->getMacroElement(i));
mesh->getMacroElement(i)->setOppVertex(k, m);
mesh->getMacroElement(j)->setOppVertex(m, k);
break;
}
}
TEST_EXIT(j < mesh->getNumberOfLeaves())
("could not find neighbour %d of element %d\n", k, i);
// if(j == mesh->getNumberOfLeaves()) {
// ::std::cout << "neighbour " << k << " not found" << ::std::endl;
// mesh->getMacroElement(i)->setBoundary(k, 1111);
// mesh->getMacroElement(i)->setNeighbour(k, NULL);
// mesh->getMacroElement(i)->setOppVertex(k, -1);
// }
}
}
}
......@@ -1002,13 +983,14 @@ namespace AMDiS {
void MacroReader::boundaryDOFs(Mesh *mesh)
{
FUNCNAME("Mesh::boundaryDOFs");
int i, lnode = mesh->getNode(EDGE);
int k, lne = mesh->getNumberOfLeaves();
int max_n_neigh = 0, n_neigh, ov;
FUNCNAME("Mesh::boundaryDOFs()");
int lnode = mesh->getNode(EDGE);
int k, lne = mesh->getNumberOfLeaves();
int max_n_neigh = 0, n_neigh, ov;
::std::deque<MacroElement*>::iterator mel;
const MacroElement* neigh;
DegreeOfFreedom *dof;
DegreeOfFreedom *dof;
mesh->setNumberOfEdges(0);
mesh->setNumberOfFaces(0);
......@@ -1017,52 +999,52 @@ namespace AMDiS {
switch(dim) {
case 2:
for (mel = mesh->firstMacroElement(); mel!=mesh->endOfMacroElements(); mel++) {
for (mel = mesh->firstMacroElement(); mel != mesh->endOfMacroElements(); mel++) {
// check for periodic boundary
Element *el = const_cast<Element*>((*mel)->getElement());
ElementData *ed = el->getElementData(PERIODIC);
DimVec<bool> periodic(dim, DEFAULT_VALUE, false);
if(ed) {
if (ed) {
::std::list<LeafDataPeriodic::PeriodicInfo> &periodicInfos =
dynamic_cast<LeafDataPeriodic*>(ed)->getInfoList();
::std::list<LeafDataPeriodic::PeriodicInfo>::iterator it;
::std::list<LeafDataPeriodic::PeriodicInfo>::iterator end = periodicInfos.end();
for(it = periodicInfos.begin(); it != end; ++it) {
if(it->type != 0) {
for (it = periodicInfos.begin(); it != end; ++it) {
if (it->type != 0) {
periodic[it->elementSide] = true;
}
}
}
for (i = 0; i < mesh->getGeo(NEIGH); i++) {
for (int i = 0; i < mesh->getGeo