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Commit e9313900 authored by Praetorius, Simon's avatar Praetorius, Simon
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some new baseproblems

parent 7d720fce
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Showing with 322 additions and 200 deletions
extensions/time/ExtendedRosenbrockAdaptInstationary.h
View file @ e9313900
......@@ -72,9 +72,6 @@ namespace AMDiS {
void reset();
protected:
/// Pointer to the Rosenbrock method that should be used.
RosenbrockMethod *rosenbrockMethod;
/// Pointer to the stationary problem;
ProblemStationary *rosenbrockStat;
......@@ -84,7 +81,6 @@ namespace AMDiS {
/// If true, the last timestep was rejected.
bool lastTimestepRejected;
/// If true, more than one of the last timesteps were rejected.
bool succRejection;
......@@ -95,24 +91,12 @@ namespace AMDiS {
/// Timestep of the last accepted time iteration.
double tauAcc;
/// Error estimation of the last accepted time iteration.
double estAcc;
/// Timestep of the last rejected time iteration.
double tauRej;
/// Error estimation of the last rejected time iteration.
double estRej;
/// Current timestep.
double tau;
/// The value tau * gamma, where gamma is a value of the used
/// Rosenbrock method.
double tauGamma, minusTauGamma, invTauGamma, minusInvTauGamma;
double oldTime;
/// If true, the first timestep is calculated with different timesteps.
/// This is usually used to make a study how the time error estimator
/// behavous for different timesteps.
......@@ -121,8 +105,6 @@ namespace AMDiS {
/// If \ref dbgTimestepStudy is set to true, then this array contains the
/// timesteps for which the first timestep should be calculated.
vector<double> dbgTimesteps;
vector<double> errorEstWeights;
};
......
extensions/time/ExtendedRosenbrockAdaptInstationary.hh
View file @ e9313900
......@@ -31,15 +31,11 @@ namespace AMDiS {
succRejection(false),
fixFirstTimesteps(0),
tau(1.0),
tauGamma(1.0),
minusTauGamma(-1.0),
invTauGamma(1.0),
minusInvTauGamma(-1.0),
oldTime(adaptInfo->getStartTime()),
dbgTimestepStudy(false)
{
FUNCNAME("ExtendedRosenbrockAdaptInstationary::ExtendedRosenbrockAdaptInstationary()");
initConstructor(problemStat);
rosenbrockStat->setOldTime(adaptInfo->getStartTime());
}
......@@ -57,14 +53,11 @@ namespace AMDiS {
succRejection(false),
fixFirstTimesteps(0),
tau(1.0),
tauGamma(1.0),
minusTauGamma(-1.0),
invTauGamma(1.0),
minusInvTauGamma(-1.0),
dbgTimestepStudy(false)
{
FUNCNAME("ExtendedRosenbrockAdaptInstationary::ExtendedRosenbrockAdaptInstationary()");
initConstructor(&problemStat);
rosenbrockStat->setOldTime(adaptInfo->getStartTime());
}
......@@ -73,43 +66,12 @@ namespace AMDiS {
{
FUNCNAME("ExtendedRosenbrockAdaptInstationary::initConstructor()");
std::string str("");
std::string initFileStr(name + "->rosenbrock method");
Parameters::get(initFileStr, str);
RosenbrockMethodCreator *creator =
dynamic_cast<RosenbrockMethodCreator*>(CreatorMap<RosenbrockMethod>::getCreator(str, initFileStr));
rosenbrockMethod = creator->create();
TEST_EXIT_DBG(rosenbrockMethod)("This should not happen!\n");
Parameters::get(name + "->fix first timesteps", fixFirstTimesteps);
rosenbrockStat->setRosenbrockMethod(rosenbrockMethod);
adaptInfo->setRosenbrockMode(true);
rosenbrockStat->setTauGamma(&tauGamma, &minusTauGamma,
&invTauGamma, &minusInvTauGamma,
&oldTime);
rosenbrockStat->setTau(&tau);
Parameters::get(name + "->fix first timesteps", fixFirstTimesteps);
Parameters::get(name + "->rosenbrock->timestep study", dbgTimestepStudy);
Parameters::get(name + "->rosenbrock->timestep study steps", dbgTimesteps);
Parameters::get(name + "->rosenbrock->error weights", errorEstWeights);
if (errorEstWeights.size() == 0) {
WARNING("No weights for time-error estimation given.\n");
}
errorEstWeights.resize(adaptInfo->getSize(), 0.0);
double SumErrorEstWeights = vector_operations::sum(errorEstWeights);
if (SumErrorEstWeights<DBL_TOL) {
WARNING("Using equal weights for all components!\n");
for (size_t i = 0; i < errorEstWeights.size(); i++)
errorEstWeights[i] = 1.0/static_cast<double>(adaptInfo->getSize());
} else {
for (size_t i = 0; i < errorEstWeights.size(); i++)
errorEstWeights[i] *= 1.0/SumErrorEstWeights;
}
}
......@@ -122,15 +84,9 @@ namespace AMDiS {
lastTimestepRejected = false;
succRejection = false;
fixFirstTimesteps = 0;
tau = 1.0;
tauGamma = 1.0;
minusTauGamma = -1.0;
invTauGamma = 1.0;
minusInvTauGamma = -1.0;
oldTime = 0.0;
}
/*
template<typename ProblemStationary>
void ExtendedRosenbrockAdaptInstationary<ProblemStationary>::oneTimestep()
{
......@@ -160,11 +116,6 @@ namespace AMDiS {
adaptInfo->setTime(adaptInfo->getTime() + adaptInfo->getTimestep());
problemTime->setTime(adaptInfo);
tau = adaptInfo->getTimestep();
tauGamma = tau * rosenbrockMethod->getGamma();
minusTauGamma = -tauGamma;
invTauGamma = 1.0 / (tau * rosenbrockMethod->getGamma());
minusInvTauGamma = -1.0;
INFO(info, 6)("time = %e timestep = %e\n",
adaptInfo->getTime(), adaptInfo->getTimestep());
......@@ -176,13 +127,10 @@ namespace AMDiS {
problemIteration->oneIteration(adaptInfo, FULL_ITERATION);
problemIteration->endIteration(adaptInfo);
double errorEst = 0.0;
for (size_t i = 0; i < adaptInfo->getSize(); i++) {
errorEst += errorEstWeights[i] * adaptInfo->getTimeEstSum(i);
}
double errorEst = adaptInfo->getTimeEst();
INFO(info, 6)("overall time estimate = %e\n", errorEst);
double newTimestep = 0.0;
double order = rosenbrockMethod->getOrder();
if (errorEst < timeTol || fixFirstTimesteps > 0 || firstTimestep) {
double fac = 1.0;
......@@ -190,39 +138,23 @@ namespace AMDiS {
if (fixFirstTimesteps > 0) {
newTimestep = adaptInfo->getTimestep();
} else {
if (firstTimestep || succRejection) {
fac = pow((timeTol / errorEst), 1.0 / order);
} else {
fac = adaptInfo->getTimestep() / tauAcc *
pow((timeTol * estAcc / (errorEst * errorEst)), 1.0 / order);
}
fac = std::min(fac, 3.0);
newTimestep = fac * adaptInfo->getTimestep();
newTimestep *= 0.95;
if (firstTimestep || succRejection)
newTimestep = rosenbrockStat->getNewTimestep(timeTol, adaptInfo->getTimestep());
else
newTimestep = rosenbrockStat->getNewTimestep(timeTol, tauAcc, adaptInfo->getTimestep());
}
tauAcc = adaptInfo->getTimestep();
estAcc = errorEst;
lastTimestepRejected = false;
succRejection = false;
} else {
if (lastTimestepRejected) {
succRejection = true;
double reducedP =
log(errorEst / estRej) / log(adaptInfo->getTimestep() / tauRej);
if (reducedP < order && reducedP > 0.0)
order = reducedP;
succRejection = true;
rosenbrockStat->reduceOrder(tauRej, adaptInfo->getTimestep());
}
newTimestep = pow((timeTol / errorEst), 1.0 / order) * adaptInfo->getTimestep();
newTimestep *= 0.95;
newTimestep = rosenbrockStat->getNewTimestep(timeTol, adaptInfo->getTimestep(), false);
tauRej = adaptInfo->getTimestep();
estRej = errorEst;
tauRej = adaptInfo->getTimestep();
lastTimestepRejected = true;
}
......@@ -267,12 +199,77 @@ namespace AMDiS {
} while (rejected ||
(dbgTimestepStudy && (studyTimestep + 1 < dbgTimesteps.size())));
rosenbrockStat->acceptTimestep();
oldTime = adaptInfo->getTime();
rosenbrockStat->acceptTimestep(adaptInfo);
adaptInfo->setLastProcessedTimestep(adaptInfo->getTimestep());
adaptInfo->incTimestepNumber();
}*/
template<typename ProblemStationary>
void ExtendedRosenbrockAdaptInstationary<ProblemStationary>::oneTimestep()
{
FUNCNAME("ExtendedRosenbrockAdaptInstationary::oneTimestep()");
// estimate before first adaption
if (adaptInfo->getTime() <= adaptInfo->getStartTime())
problemIteration->oneIteration(adaptInfo, ESTIMATE);
double timeTol = adaptInfo->getTimeTolerance(0);
// increment time
adaptInfo->setTime(adaptInfo->getTime() + adaptInfo->getTimestep());
problemTime->setTime(adaptInfo);
tau = adaptInfo->getTimestep();
INFO(info, 6)("time = %e timestep = %e\n",
adaptInfo->getTime(), adaptInfo->getTimestep());
adaptInfo->setSpaceIteration(0);
// do the iteration
problemIteration->beginIteration(adaptInfo);
problemIteration->oneIteration(adaptInfo, FULL_ITERATION);
problemIteration->endIteration(adaptInfo);
double errorEst = adaptInfo->getTimeEst();
INFO(info, 6)("overall time estimate = %e\n", errorEst);
double newTimestep = 0.0;
double fac = 1.0;
if (fixFirstTimesteps > 0) {
newTimestep = adaptInfo->getTimestep();
} else {
if (firstTimestep)
newTimestep = rosenbrockStat->getNewTimestep(timeTol, adaptInfo->getTimestep());
else
newTimestep = rosenbrockStat->getNewTimestep(timeTol, tauAcc, adaptInfo->getTimestep());
}
tauAcc = adaptInfo->getTimestep();
for (int i = 0; i < adaptInfo->getSize(); i++)
INFO(info, 6)("time estimate for component %d = %e\n",
i, adaptInfo->getTimeEstSum(i));
INFO(info, 6)("Accepted timestep at time = %e with timestep = %e\n",
adaptInfo->getTime() - adaptInfo->getTimestep(),
adaptInfo->getTimestep());
adaptInfo->setTimestep(newTimestep);
if (errorEst > timeTol)
MSG("Accepted timestep but tolerance not reached \n");
if (firstTimestep)
firstTimestep = false;
if (fixFirstTimesteps > 0)
fixFirstTimesteps--;
rosenbrockStat->acceptTimestep(adaptInfo);
adaptInfo->setLastProcessedTimestep(adaptInfo->getTimestep());
adaptInfo->incTimestepNumber();
}
}
extensions/time/ExtendedRosenbrockStationary.cc
View file @ e9313900
......@@ -12,11 +12,11 @@
#include "time/ExtendedRosenbrockStationary.h"
#include "io/VtkWriter.h"
#include "ExtendedRosenbrockStationary.h"
#include "SystemVector.h"
#include "OEMSolver.h"
#include "Debug.h"
#include "POperators_ZOT.h"
#include "VectorOperations.h"
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
#include "parallel/MeshDistributor.h"
......@@ -24,12 +24,43 @@
using namespace AMDiS;
void ExtendedRosenbrockStationary::acceptTimestep()
{
*solution = *newUn;
*unVec = *newUn;
}
void ExtendedRosenbrockStationary::initialize(Flag initFlag,
ProblemStat *adoptProblem,
Flag adoptFlag)
{ FUNCNAME_DBG("ExtendedRosenbrockStationary::initialize()");
super::initialize(initFlag, adoptProblem, adoptFlag);
// create rosenbrock method
std::string str("");
std::string initFileStr(name + "->rosenbrock->method");
Parameters::get(initFileStr, str);
RosenbrockMethodCreator *creator =
dynamic_cast<RosenbrockMethodCreator*>(CreatorMap<RosenbrockMethod>::getCreator(str, initFileStr));
rm = creator->create();
TEST_EXIT_DBG(rm)("No Rosenbrock method created!\n");
init();
// read error weights
Parameters::get(name + "->rosenbrock->error weights", errorEstWeights);
if (errorEstWeights.size() == 0) {
WARNING("No weights for time-error estimation given.\n");
}
errorEstWeights.resize(super::getNumComponents(), 0.0);
double SumErrorEstWeights = vector_operations::sum(errorEstWeights);
if (SumErrorEstWeights<DBL_TOL) {
WARNING("Using equal weights for all components!\n");
for (size_t i = 0; i < errorEstWeights.size(); i++)
errorEstWeights[i] = 1.0/static_cast<double>(super::getNumComponents());
} else {
for (size_t i = 0; i < errorEstWeights.size(); i++)
errorEstWeights[i] *= 1.0/SumErrorEstWeights;
}
std::cout << "errorEstWeights = " << errorEstWeights << "\n";
}
void ExtendedRosenbrockStationary::init()
{
......@@ -49,13 +80,43 @@ using namespace AMDiS;
stageSolutions[i] = new SystemVector(*solution);
stageSolutions[i]->set(0.0);
}
order = rm->getOrder();
}
Flag ExtendedRosenbrockStationary::oneIteration(AdaptInfo *adaptInfo, Flag toDo)
{
order = rm->getOrder();
Flag flag = 0, markFlag = 0;
if (toDo.isSet(MARK))
markFlag = problem->markElements(adaptInfo);
else
markFlag = 3;
// refine
if (toDo.isSet(ADAPT) && markFlag.isSet(MESH_REFINED))
flag = problem->refineMesh(adaptInfo);
// coarsen
if (toDo.isSet(ADAPT) && markFlag.isSet(MESH_COARSENED))
flag |= problem->coarsenMesh(adaptInfo);
if (toDo.isSet(BUILD) || toDo.isSet(SOLVE)) {
flag = stageIteration(adaptInfo, toDo, true, true);
estimateTimeError(adaptInfo);
}
if (toDo.isSet(ESTIMATE))
problem->estimate(adaptInfo);
void ExtendedRosenbrockStationary::buildAfterCoarsen(AdaptInfo *adaptInfo, Flag flag,
return flag;
}
Flag ExtendedRosenbrockStationary::stageIteration(AdaptInfo *adaptInfo, Flag flag,
bool asmMatrix, bool asmVector)
{
FUNCNAME("ExtendedRosenbrockStationary::buildAfterCoarsen()");
{
FUNCNAME("ExtendedRosenbrockStationary::stageIteration()");
TEST_EXIT(tauPtr)("No tau pointer defined in stationary problem!\n");
......@@ -67,10 +128,12 @@ using namespace AMDiS;
*newUn = *unVec;
if (!fixedTimestep)
*lowSol = *unVec;
invTauGamma = 1.0 / ((*tauPtr) * rm->getGamma());
for (int i = 0; i < rm->getStages(); i++) {
stageTime = (*oldTime) + rm->getAlphaI(i) * (*tauPtr);
stageTime = oldTime + rm->getAlphaI(i) * (*tauPtr);
tauGammaI = rm->getGammaI(i) * (*tauPtr);
// stage-solution: u_s(i) = u_old + sum_{j=0}^{i-1} a_ij*U_j
......@@ -107,12 +170,6 @@ using namespace AMDiS;
super::buildAfterCoarsen(adaptInfo, flag | UPDATE_DIRICHLET_BC, (i == 0), true);
// mtl::io::matrix_market_ostream out("matrix.mat");
// SolverMatrix<Matrix<DOFMatrix*> > solverMatrix;
// solverMatrix.setMatrix(*getSystemMatrix());
// out << solverMatrix.getMatrix();
// out.close();
super::solve(adaptInfo, i == 0, true);
*(stageSolutions[i]) = *solution;
......@@ -130,21 +187,53 @@ using namespace AMDiS;
}
}
stageTime = (*oldTime) + (*tauPtr);
stageTime = oldTime + (*tauPtr);
Flag flag_;
return flag_;
}
double ExtendedRosenbrockStationary::estimateTimeError(AdaptInfo* adaptInfo)
{
oldErrorEst = errorEst;
errorEst = 0.0;
if (!fixedTimestep) {
for (int i = 0; i < nComponents; i++) {
for (int i = 0; i < lowSol->getSize(); i++) {
(*(lowSol->getDOFVector(i))) -= (*(newUn->getDOFVector(i)));
adaptInfo->setTimeEstSum(lowSol->getDOFVector(i)->l2norm(), i+componentShift);
errorEst += errorEstWeights[i] * adaptInfo->getTimeEstSum(i+componentShift);
}
}
adaptInfo->setTimeEst(errorEst);
return errorEst;
}
void ExtendedRosenbrockStationary::acceptTimestep(AdaptInfo* adaptInfo)
{
*solution = *newUn;
*unVec = *newUn;
oldTime = adaptInfo->getTime();
}
void ExtendedRosenbrockStationary::solve(AdaptInfo *adaptInfo, bool, bool)
{}
double ExtendedRosenbrockStationary::getNewTimestep(double tol, double tau, bool restrict)
{
double fac = pow((tol / errorEst), 1.0 / order);
if (restrict)
fac = std::min(3.0, fac);
return 0.95 * (fac * tau);
}
double ExtendedRosenbrockStationary::getNewTimestep(double tol, double oldTau, double tau, bool restrict)
{
double fac = tau / oldTau * pow((tol * oldErrorEst / sqr(errorEst)), 1.0 / order);
if (restrict)
fac = std::min(3.0, fac);
return 0.95 * (fac * tau);
}
void ExtendedRosenbrockStationary::addOperator(Operator &op, int row, int col,
double *factor, double *estFactor)
{
......@@ -173,11 +262,9 @@ using namespace AMDiS;
{
FUNCNAME("ExtendedRosenbrockStationary::addTimeOperator()");
TEST_EXIT(invTauGamma)("This should not happen!\n");
Operator *op = new Operator(componentSpaces[row], componentSpaces[col]);
op->addTerm(new Simple_ZOT(factor));
super::addMatrixOperator(op, row, col, invTauGamma, invTauGamma);
super::addMatrixOperator(op, row, col, &invTauGamma, &invTauGamma);
Operator *opRhs = new Operator(componentSpaces[row]);
opRhs->addTerm(new Phase_ZOT(timeRhsVec->getDOFVector(col), factor));
......@@ -200,10 +287,10 @@ using namespace AMDiS;
void ExtendedRosenbrockStationary::addSingularDirichletBC(WorldVector<double> &pos, int row, int col,
AbstractFunction<double, WorldVector<double> > &fct)
AbstractFunction<double, WorldVector<double> > *fct)
{
DOFVector<double>* vec = new DOFVector<double>(componentSpaces[col], "vec");
MyRosenbrockBoundary bound(&fct, NULL, vec, row, col);
MyRosenbrockBoundary bound(fct, NULL, vec, row, col);
boundaries.push_back(bound);
super::addSingularDirichletBC(pos, row, col, *vec);
......@@ -211,10 +298,10 @@ using namespace AMDiS;
void ExtendedRosenbrockStationary::addSingularDirichletBC(DegreeOfFreedom idx, int row, int col,
AbstractFunction<double, WorldVector<double> > &fct)
AbstractFunction<double, WorldVector<double> > *fct)
{
DOFVector<double>* vec = new DOFVector<double>(componentSpaces[col], "vec");
MyRosenbrockBoundary bound(&fct, NULL, vec, row, col);
MyRosenbrockBoundary bound(fct, NULL, vec, row, col);
boundaries.push_back(bound);
super::addSingularDirichletBC(idx, row, col, *vec);
......
extensions/time/ExtendedRosenbrockStationary.h
View file @ e9313900
......@@ -69,53 +69,30 @@ using namespace AMDiS;
componentShift(componentShift_),
first(true),
fixedTimestep(false),
order(0),
minusOne(-1.0),
tauPtr(NULL),
tauGamma(NULL),
minusTauGamma(NULL),
invTauGamma(NULL),
minusInvTauGamma(NULL),
stageTime(0.0)
invTauGamma(1.0),
stageTime(0.0),
errorEst(0.0),
oldErrorEst(0.0)
{}
DOFVector<double>* getUnVec(int i)
{
return unVec->getDOFVector(i);
}
DOFVector<double>* getStageSolution(int i)
{
return stageSolution->getDOFVector(i);
}
DOFVector<double>* getTimeRhsVec(int i)
{
return timeRhsVec->getDOFVector(i);
}
void acceptTimestep();
void buildAfterCoarsen(AdaptInfo *adaptInfo, Flag flag,
bool asmMatrix, bool asmVector);
virtual void initialize(Flag initFlag,
ProblemStat *adoptProblem = NULL,
Flag adoptFlag = INIT_NOTHING);
void solve(AdaptInfo *adaptInfo, bool a = true, bool b = false);
Flag oneIteration(AdaptInfo *adaptInfo, Flag toDo);
void setRosenbrockMethod(RosenbrockMethod *method)
{
rm = method;
init();
}
Flag stageIteration(AdaptInfo *adaptInfo, Flag flag, bool asmMatrix, bool asmVector);
void setFixedTimestep(bool fixed) { fixedTimestep = fixed; }
virtual double estimateTimeError(AdaptInfo* adaptInfo);
void reset()
{
first = true;
stageSolution->set(0.0);
unVec->set(0.0);
for (int i = 0; i < rm->getStages(); i++)
stageSolutions[i]->set(0.0);
}
void acceptTimestep(AdaptInfo* adaptInfo);
double getNewTimestep(double tol, double tau, bool restrict = true);
double getNewTimestep(double tol, double oldTau, double tau, bool restrict = true);
void addOperator(Operator &op, int row, int col,
double *factor = NULL, double *estFactor = NULL);
......@@ -125,38 +102,92 @@ using namespace AMDiS;