CMakeLists.txt 21.6 KB
Newer Older
1
project(AMDIS)
Naumann, Andreas's avatar
Naumann, Andreas committed
2

3
cmake_minimum_required(VERSION 2.6)
4 5 6

SET(LIB_DIR ${AMDIS_SOURCE_DIR}/lib)
SET(SOURCE_DIR ${AMDIS_SOURCE_DIR}/src)
7

8
#TODO: use the cmake build type
9
SET(MTL_INCLUDE_DIR ${LIB_DIR}/mtl4/ CACHE PATH "mtl4 directory")
10

11 12
set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -DDEBUG=0") #-Wno-unused-but-set-variable
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -DDEBUG=1 -O0") #-Wno-unused-but-set-variable
13 14 15 16 17 18 19 20 21 22 23 24 25 26
if(NOT CurrentRevision)
	find_package(Subversion)
	if(Subversion_FOUND)
	  Subversion_WC_INFO(${CMAKE_CURRENT_SOURCE_DIR} svn_info)
	  #message("svn-rev: ${svn_info_WC_REVISION}")
	  set(CurrentRevision "0.9.${svn_info_WC_REVISION}")
	endif()
endif()
if(NOT AMDIS_MAJOR)
  set(AMDIS_MAJOR "0")
endif()
if(NOT AMDIS_MINOR)
  set(AMDIS_MINOR "9")
endif()
27
set(COMPILEFLAGS "-DAMDIS_VERSION=${CurrentRevision}")
28 29 30 31 32 33

#define the build type, empty can be everything and nothing
if(CMAKE_BUILD_TYPE STREQUAL "")
	set(CMAKE_BUILD_TYPE "Release")
endif()

34 35 36 37 38
if(CMAKE_CXX_COMPILER MATCHES ".*icpc")
	Message("Compiler: Intel")
	set(CMAKE_CXX_FLAGS "-diag-disable 654 -diag-disable 858") 
endif()

Thomas Witkowski's avatar
Blub  
Thomas Witkowski committed
39

40
SET(ENABLE_PARALLEL_DOMAIN "OFF" CACHE STRING "use parallel domain decomposition. please set to one of: PMTL, PETSC, OFF" )
Naumann, Andreas's avatar
Naumann, Andreas committed
41 42
option(USE_PETSC_DEV false)
option(ENABLE_ZOLTAN false)
43
option(ENABLE_UMFPACK "Use of UMFPACK solver" false)
Praetorius, Simon's avatar
Praetorius, Simon committed
44
option(ENABLE_PNG "use png reader/writer" false)
45
option(ENABLE_BDDCML "Use of BDDCML library" false)
46
option(ENABLE_EXTENSIONS "Use extensions" false)
Thomas Witkowski's avatar
Blub  
Thomas Witkowski committed
47 48 49 50 51 52
option(ENABLE_OPENMP "Use OpenMP" false)
option(ENABLE_OUTPUT "AMDiS output priniting, disable only for debugging!" true)


mark_as_advanced(ENABLE_OUTPUT)

Naumann, Andreas's avatar
Naumann, Andreas committed
53

54 55
find_package(Boost 1.42 REQUIRED)
if(Boost_FOUND)
56
  list(APPEND AMDIS_INCLUDE_DIRS ${Boost_INCLUDE_DIR})
57 58 59 60 61
  message("boost lib-dirs: ${Boost_LIBRARY_DIRS}")
  message("use the boost dir: ${Boost_INCLUDE_DIR}")
  if(WIN32)
	message("the windows find_boost does not set the boost library paths, please set it")
	SET(Boost_LIBRARY_DIRS CACHE PATH "The directory containing the boost libraries")
62
  endif(WIN32)
63
  list(APPEND AMDIS_LINK_DIRS ${Boost_LIBRARY_DIRS})
64
endif(Boost_FOUND)
Naumann, Andreas's avatar
Naumann, Andreas committed
65

66

Thomas Witkowski's avatar
Thomas Witkowski committed
67 68
SET(AMDIS_SRC ${SOURCE_DIR}/AdaptBase.cc
	      ${SOURCE_DIR}/AdaptInfo.cc
69
	      ${SOURCE_DIR}/AdaptInstationary.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
70
	      ${SOURCE_DIR}/AdaptStationary.cc
71
	      ${SOURCE_DIR}/AMDiS.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
72 73 74 75
	      ${SOURCE_DIR}/Assembler.cc
	      ${SOURCE_DIR}/BasisFunction.cc
	      ${SOURCE_DIR}/Boundary.cc
	      ${SOURCE_DIR}/BoundaryManager.cc
76
	      ${SOURCE_DIR}/BoundaryObject.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
77 78 79 80 81 82
	      ${SOURCE_DIR}/Cholesky.cc
	      ${SOURCE_DIR}/CoarseningManager.cc
	      ${SOURCE_DIR}/CoarseningManager1d.cc
	      ${SOURCE_DIR}/CoarseningManager2d.cc
	      ${SOURCE_DIR}/CoarseningManager3d.cc
	      ${SOURCE_DIR}/ComponentTraverseInfo.cc
Praetorius, Simon's avatar
Praetorius, Simon committed
83
              ${SOURCE_DIR}/CouplingIterationInterface.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
84 85 86 87 88
	      ${SOURCE_DIR}/CreatorMap.cc
	      ${SOURCE_DIR}/DOFAdmin.cc
	      ${SOURCE_DIR}/DOFIndexed.cc
	      ${SOURCE_DIR}/DOFMatrix.cc
	      ${SOURCE_DIR}/DOFVector.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
89
	      ${SOURCE_DIR}/Debug.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
90 91 92 93 94 95 96 97 98 99
	      ${SOURCE_DIR}/DirichletBC.cc
	      ${SOURCE_DIR}/DualTraverse.cc
	      ${SOURCE_DIR}/ElInfo.cc
	      ${SOURCE_DIR}/ElInfo1d.cc
	      ${SOURCE_DIR}/ElInfo2d.cc
	      ${SOURCE_DIR}/ElInfo3d.cc
	      ${SOURCE_DIR}/ElInfoStack.cc
	      ${SOURCE_DIR}/Element.cc
	      ${SOURCE_DIR}/ElementData.cc
	      ${SOURCE_DIR}/ElementDofIterator.cc
100
	      ${SOURCE_DIR}/ElementRegion_ED.cc	
Thomas Witkowski's avatar
Thomas Witkowski committed
101 102 103 104 105 106 107
	      ${SOURCE_DIR}/FiniteElemSpace.cc
	      ${SOURCE_DIR}/FirstOrderAssembler.cc
	      ${SOURCE_DIR}/FirstOrderTerm.cc
	      ${SOURCE_DIR}/FixVec.cc
	      ${SOURCE_DIR}/Global.cc
	      ${SOURCE_DIR}/GlobalDOFNumbering.cc
	      ${SOURCE_DIR}/GlobalElementNumbering.cc
Praetorius, Simon's avatar
Praetorius, Simon committed
108
              ${SOURCE_DIR}/Initfile.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
109 110 111 112 113
	      ${SOURCE_DIR}/Lagrange.cc
	      ${SOURCE_DIR}/LeafData.cc
	      ${SOURCE_DIR}/Line.cc
	      ${SOURCE_DIR}/MacroElement.cc
	      ${SOURCE_DIR}/Marker.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
114
	      ${SOURCE_DIR}/MatrixVector.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
115 116 117 118 119 120 121 122
	      ${SOURCE_DIR}/Mesh.cc
	      ${SOURCE_DIR}/MeshStructure.cc
	      ${SOURCE_DIR}/Operator.cc
	      ${SOURCE_DIR}/OperatorTerm.cc
	      ${SOURCE_DIR}/Parametric.cc
	      ${SOURCE_DIR}/PeriodicBC.cc
	      ${SOURCE_DIR}/ProblemImplicit.cc
	      ${SOURCE_DIR}/ProblemInstat.cc
123 124 125
	      ${SOURCE_DIR}/ProblemInterpol.cc
	      ${SOURCE_DIR}/ProblemStat.cc
	      ${SOURCE_DIR}/ProblemStatDbg.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
126 127 128 129 130 131 132 133 134 135 136 137 138 139
	      ${SOURCE_DIR}/Projection.cc
	      ${SOURCE_DIR}/QPInfo.cc
	      ${SOURCE_DIR}/QPsiPhi.cc
	      ${SOURCE_DIR}/Quadrature.cc
	      ${SOURCE_DIR}/RCNeighbourList.cc
	      ${SOURCE_DIR}/Recovery.cc
	      ${SOURCE_DIR}/RefinementManager.cc
	      ${SOURCE_DIR}/RefinementManager1d.cc
	      ${SOURCE_DIR}/RefinementManager2d.cc
	      ${SOURCE_DIR}/RefinementManager3d.cc
	      ${SOURCE_DIR}/RobinBC.cc
	      ${SOURCE_DIR}/ScalableQuadrature.cc
	      ${SOURCE_DIR}/SecondOrderAssembler.cc
	      ${SOURCE_DIR}/SecondOrderTerm.cc
140
	      ${SOURCE_DIR}/Serializer.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
141
	      ${SOURCE_DIR}/StandardProblemIteration.cc
142
	      ${SOURCE_DIR}/SolverMatrix.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
143 144 145 146
	      ${SOURCE_DIR}/SubAssembler.cc
	      ${SOURCE_DIR}/SubElInfo.cc
	      ${SOURCE_DIR}/SubQuadrature.cc
	      ${SOURCE_DIR}/SurfaceQuadrature.cc
147 148
	      ${SOURCE_DIR}/SurfaceRegion_ED.cc
	      ${SOURCE_DIR}/SystemVector.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
149
	      ${SOURCE_DIR}/Tetrahedron.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
150
	      ${SOURCE_DIR}/Timer.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
151 152 153 154 155
	      ${SOURCE_DIR}/Traverse.cc
	      ${SOURCE_DIR}/Triangle.cc
	      ${SOURCE_DIR}/VertexVector.cc
	      ${SOURCE_DIR}/ZeroOrderAssembler.cc
	      ${SOURCE_DIR}/ZeroOrderTerm.cc
156 157 158 159
	      ${SOURCE_DIR}/est/Estimator.cc
	      ${SOURCE_DIR}/est/RecoveryEstimator.cc
	      ${SOURCE_DIR}/est/ResidualEstimator.cc
	      ${SOURCE_DIR}/est/SimpleResidualEstimator.cc
160 161
	      ${SOURCE_DIR}/io/ArhReader.cc
	      ${SOURCE_DIR}/io/ArhWriter.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
162 163 164 165 166 167 168
	      ${SOURCE_DIR}/io/DofWriter.cc
	      ${SOURCE_DIR}/io/ElementFileWriter.cc
	      ${SOURCE_DIR}/io/FileWriter.cc
	      ${SOURCE_DIR}/io/GNUPlotWriter.cc
	      ${SOURCE_DIR}/io/MacroInfo.cc
	      ${SOURCE_DIR}/io/MacroReader.cc
	      ${SOURCE_DIR}/io/MacroWriter.cc
Praetorius, Simon's avatar
Praetorius, Simon committed
169
	      ${SOURCE_DIR}/io/PngReader.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
170 171
	      ${SOURCE_DIR}/io/PngWriter.cc
	      ${SOURCE_DIR}/io/PovrayWriter.cc
172
	      ${SOURCE_DIR}/io/Spreadsheet.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
173 174 175
	      ${SOURCE_DIR}/io/ValueReader.cc
	      ${SOURCE_DIR}/io/ValueWriter.cc
	      ${SOURCE_DIR}/io/VtkWriter.cc
176
	      ${SOURCE_DIR}/io/VtkVectorWriter.cc
177
	      ${SOURCE_DIR}/nonlin/ProblemNonLin.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
178
	      ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc
179
	      ${SOURCE_DIR}/time/RosenbrockMethod.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
180
	      ${SOURCE_DIR}/time/RosenbrockStationary.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
181 182
	      )

183
if(ENABLE_PARALLEL_DOMAIN)
184 185 186
	
	### Search for MPI compiler and get compile flags and include paths. ###

Naumann, Andreas's avatar
Naumann, Andreas committed
187
	find_package(MPI REQUIRED)
188
	if(MPI_FOUND)
189
	  list(APPEND COMPILEFLAGS "${MPI_COMPILE_FLAGS}")
190 191
	  include_directories(${MPI_INCLUDE_PATH})
	endif(MPI_FOUND)
192
 
193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216


	### Search for ParMetis ###

	find_file(PARMETIS_HEADER_FILE "parmetis.h" PATH ENV CPATH)
	if(PARMETIS_HEADER_FILE)
		get_filename_component(PARMETIS_INCLUDE_PATH "${PARMETIS_HEADER_FILE}" PATH CACHE)
		include_directories(${PARMETIS_INCLUDE_PATH})
	else()
		message(FATAL_ERROR "Could not find ParMetis header file!")
	endif(PARMETIS_HEADER_FILE)

	find_file(PARMETIS_LIB_FILE "libparmetis.a" PATH ENV LIBRARY_PATH)
	if(PARMETIS_LIB_FILE)
		get_filename_component(PARMETIS_LINK_PATH "${PARMETIS_LIB_FILE}" PATH CACHE)
		link_directories(${PARMETIS_LINK_PATH})
	else()
		message(FATAL_ERROR "Could not find ParMetis library file!")
	endif(PARMETIS_LIB_FILE)


	
	### Search for Zoltan ###

217
	if(ENABLE_ZOLTAN)
218 219
	  find_file(ZOLTAN_HEADER_FILE "zoltan_cpp.h" PATH ENV CPATH)
	  if(ZOLTAN_HEADER_FILE)
220
		get_filename_component(ZOLTAN_HEADER_DIR "${ZOLTAN_HEADER_FILE}" PATH CACHE)
221
		include_directories(${ZOLTAN_HEADER_DIR})
222
	  else()
223 224 225
		message(FATAL_ERROR "Could not find Zoltan include file!")
	  endif(ZOLTAN_HEADER_FILE)

226
	  list(APPEND COMPILEFLAGS "-DHAVE_ZOLTAN")
227 228
	endif(ENABLE_ZOLTAN)

229 230


231
	list(APPEND COMPILEFLAGS "-DHAVE_PARALLEL_DOMAIN_AMDIS=1")
Naumann, Andreas's avatar
Naumann, Andreas committed
232
	SET(PARALLEL_DOMAIN_AMDIS_SRC
233
               	${SOURCE_DIR}/parallel/DofComm.cc
234
		${SOURCE_DIR}/parallel/CheckerPartitioner.cc
235
		${SOURCE_DIR}/parallel/ElementObjectDatabase.cc
236
		${SOURCE_DIR}/parallel/InteriorBoundary.cc
237
		${SOURCE_DIR}/parallel/MatrixNnzStructure.cc
238
		${SOURCE_DIR}/parallel/MeshDistributor.cc 
239
		${SOURCE_DIR}/parallel/MeshLevelData.cc 
240
		${SOURCE_DIR}/parallel/MeshManipulation.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
241
		${SOURCE_DIR}/parallel/MeshPartitioner.cc
242
		${SOURCE_DIR}/parallel/MpiHelper.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
243
		${SOURCE_DIR}/parallel/ParallelDebug.cc
244
		${SOURCE_DIR}/parallel/ParallelDofMapping.cc
245
		${SOURCE_DIR}/parallel/ParallelProblemStatBase.cc
246
		${SOURCE_DIR}/parallel/PeriodicMap.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
247 248
                ${SOURCE_DIR}/parallel/ParMetisPartitioner.cc
		${SOURCE_DIR}/parallel/StdMpi.cc
249
		${SOURCE_DIR}/parallel/ZoltanPartitioner.cc)
250 251 252 253 254 255
		
	if(ENABLE_PARALLEL_DOMAIN STREQUAL "PETSC")
		set(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH};/usr/share/cmake-2.8/Modules/;${CMAKE_SOURCE_DIR}/")
		set(PETSC_EXECUTABLE_RUNS ON)
		find_package(PETSc REQUIRED)
		include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
256
		list(APPEND AMDIS_INCLUDE_DIRS ${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
257 258
		list(APPEND PARALLEL_DOMAIN_AMDIS_SRC 
			${SOURCE_DIR}/parallel/BddcMlSolver.cc
259
			${SOURCE_DIR}/parallel/ParallelCoarseSpaceMatVec.cc
260
			${SOURCE_DIR}/parallel/PetscHelper.cc
Thomas Witkowski's avatar
Thomas Witkowski committed
261
			${SOURCE_DIR}/parallel/PetscSolver.cc
262 263
			${SOURCE_DIR}/parallel/PetscProblemStat.cc
			${SOURCE_DIR}/parallel/PetscSolverFeti.cc
264 265
			${SOURCE_DIR}/parallel/PetscSolverFetiDebug.cc
			${SOURCE_DIR}/parallel/PetscSolverFetiMonitor.cc
266 267
			${SOURCE_DIR}/parallel/PetscSolverFetiOperators.cc
			${SOURCE_DIR}/parallel/PetscSolverFetiTimings.cc
268
			${SOURCE_DIR}/parallel/PetscSolverGlobalMatrix.cc
269
			${SOURCE_DIR}/parallel/PetscSolverGlobalBlockMatrix.cc
270
			${SOURCE_DIR}/parallel/PetscSolverSchur.cc)
271 272 273 274 275
	elseif(ENABLE_PARALLEL_DOMAIN STREQUAL "PMTL")
		set(MTL_INCLUDE_DIR "")
		find_package(MTL REQUIRED)
		list(APPEND COMPILEFLAGS "-DMTL_HAS_MPI" "-DHAVE_PARALLEL_MTL4")
		list(APPEND PARALLEL_DOMAIN_AMDIS_SRC ${SOURCE_DIR}/parallel/Mtl4Solver.cc)
276
		list(APPEND AMDIS_LIBS ${MTL_LIBRARIES})
277
	else()
278
		message(SEND_ERROR "Set the domain-decomposition version correctly.")
279 280
	endif()

281 282
	INSTALL(FILES ResolveCompilerPaths.cmake FindPackageMultipass.cmake FindPETSc.cmake
		DESTINATION share/amdis/)
283
	if(USE_PETSC_DEV)
284
	  list(APPEND COMPILEFLAGS "-DHAVE_PETSC_DEV")
Naumann, Andreas's avatar
Naumann, Andreas committed
285
	endif( USE_PETSC_DEV)
Naumann, Andreas's avatar
Naumann, Andreas committed
286 287
endif(ENABLE_PARALLEL_DOMAIN)

288

289 290

if(ENABLE_UMFPACK)
291
	find_file(UMFPACK_H umfpack.h
292
			    HINTS ENV CPATH /usr/include /usr/include/suitesparse /usr/include/ufsparse
293 294
			    DOC "headerfile umfpack.h for UMFPACK")
	if(UMFPACK_H)
295 296
		get_filename_component(UMFPACK_PATH ${UMFPACK_H} PATH)
		include_directories(${UMFPACK_PATH} ${UFCONFIG_PATH} ${AMD_PATH})
297
		list(APPEND COMPILEFLAGS "-DHAVE_UMFPACK=1" "-DMTL_HAS_UMFPACK")
298
	else()
Praetorius, Simon's avatar
Praetorius, Simon committed
299
		message(FATAL_ERROR "Could not find the UMFPACK header umfpack.h.")
300
	endif()
301
	SET(RPM_DEPEND_STR "blas")
Naumann, Andreas's avatar
Naumann, Andreas committed
302
endif(ENABLE_UMFPACK)
Praetorius, Simon's avatar
Praetorius, Simon committed
303 304 305 306 307 308 309 310 311 312 313 314 315 316


if(ENABLE_PNG)
	find_file(PNG_H png.h
			    HINTS ENV CPATH /usr/include
			    DOC "headerfile png.h for PNG-READER")
	if(PNG_H)
		get_filename_component(PNG_PATH ${PNG_H} PATH)
		include_directories(${PNG_PATH})
		list(APPEND COMPILEFLAGS "-DHAVE_PNG=1")
	else()
		message(FATAL_ERROR "Could not find the PNG header png.h.")
	endif()
endif(ENABLE_PNG)
Naumann, Andreas's avatar
Naumann, Andreas committed
317

318

Thomas Witkowski's avatar
Blub  
Thomas Witkowski committed
319 320 321 322 323 324
if(NOT ENABLE_OUTPUT)
       message(WARNING "AMDiS cout output disabled!")
       list(APPEND COMPILEFLAGS "-DSUPPRESS_OUTPUT")
endif(NOT ENABLE_OUTPUT)


325
if(ENABLE_BDDCML)
326 327
	SET(BDDCML_LINK_LIST "" CACHE STRING "Further libraries to be linked with BDDCML")
		
328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349
	find_file(BDDCML_H bddcml_interface_c.h
			   HINTS ENV CPATH
			   DOC "Header bddcml_interface_c.h for the BDDCML library.")

	if(BDDCML_H)
		get_filename_component(BDDCML_PATH ${BDDCML_H} PATH)
		include_directories(${BDDCML_PATH})		
		list(APPEND COMPILEFLAGS "-DHAVE_BDDC_ML=1")
		list(APPEND COMPILEFLAGS "-DAdd_")
	else()
		message(FATAL_ERROR "Could not find BDDCML headers.")
	endif()

	find_library(BDDCML_LIB bddcml
				HINTS ENV LIBRARY_PATH
				DOC "BDDCML library")

	if(BDDCML_LIB)
		list(APPEND AMDIS_LIBS ${BDDCML_LIB})
	else()
		message(FATAL_ERROR "Could not find the BDDCML library")
	endif()
350

Thomas Witkowski's avatar
Thomas Witkowski committed
351 352 353 354

	find_file(BLOPEX_PATH blopex
			      HINTS ENV CPATH
			      DOC "Path to BLOPEX library.")
355 356 357
endif(ENABLE_BDDCML)


358
if(ENABLE_EXTENSIONS)
359
  option(ENABLE_BASE_PROBLEMS "Use base_problems" false)
360 361 362 363 364 365
  find_path(EXTENSIONS_DIR NAMES ${SOURCE_DIR}/../../extensions/Helpers.h DOC "Path to AMDiS extensions.")
  if (EXTENSIONS_DIR)
    if (NOT EXISTS ${EXTENSIONS_DIR}/Helpers.h OR NOT EXISTS ${EXTENSIONS_DIR}/base_problems/BaseProblem.h)
      message(FATAL_ERROR "Wrong extensions directory! Directory must contain the 'Helpers.h' and the subdirectory 'base_problems'")
    else()
  
366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418
      SET(EXTENSIONS_SRC
	      ${EXTENSIONS_DIR}/Helpers.cc
	      ${EXTENSIONS_DIR}/BackgroundMesh.cc
	      ${EXTENSIONS_DIR}/GeometryTools.cc
	      ${EXTENSIONS_DIR}/POperators.cc
	      ${EXTENSIONS_DIR}/time/ExtendedRosenbrockStationary.cc
	      ${EXTENSIONS_DIR}/pugixml/src/pugixml.cpp)
      list(APPEND COMPILEFLAGS "-DHAVE_EXTENSIONS=1")
      list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR})
      list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR}/time)
      list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR}/nanoflann)
      list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR}/pugixml/src)
      add_library(extensions SHARED ${EXTENSIONS_SRC})
      list(APPEND AMDIS_LIBS extensions)

      FILE(GLOB HEADERS "${EXTENSIONS_DIR}/*.h")
      INSTALL(FILES ${HEADERS}
	      DESTINATION include/amdis/extensions/)
      FILE(GLOB HEADERS "${EXTENSIONS_DIR}/*.hh")
      INSTALL(FILES ${HEADERS}
	      DESTINATION include/amdis/extensions/)

      list(APPEND deb_add_dirs "include/amdis/extensions")

      FILE(GLOB HEADERS "${EXTENSIONS_DIR}/time/*.h")
      INSTALL(FILES ${HEADERS}
	      DESTINATION include/amdis/extensions/time/)
      FILE(GLOB HEADERS "${EXTENSIONS_DIR}/time/*.hh")
      INSTALL(FILES ${HEADERS}
	      DESTINATION include/amdis/extensions/time/)

      list(APPEND deb_add_dirs "include/amdis/extensions/time")

      FILE(GLOB HEADERS "${EXTENSIONS_DIR}/nanoflann/*.hpp")
      INSTALL(FILES ${HEADERS}
	      DESTINATION include/amdis/extensions/nanoflann/)

      list(APPEND deb_add_dirs "include/amdis/extensions/nanoflann")

      FILE(GLOB HEADERS "${EXTENSIONS_DIR}/pugixml/src/*.hpp")
      INSTALL(FILES ${HEADERS}
	      DESTINATION include/amdis/extensions/pugixml/)

      list(APPEND deb_add_dirs "include/amdis/extensions/pugixml")

      install(TARGETS extensions
	      LIBRARY DESTINATION lib/amdis/ )

# === baseProblems ====================================================================
      
      if(ENABLE_BASE_PROBLEMS)
	  SET(BASE_PROBLEMS_SRC
		  ${EXTENSIONS_DIR}/base_problems/CahnHilliard.cc
Praetorius, Simon's avatar
Praetorius, Simon committed
419 420
		  ${EXTENSIONS_DIR}/base_problems/CahnHilliard_RB.cc
		  ${EXTENSIONS_DIR}/base_problems/CahnHilliardNavierStokes.cc
421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450
    # 	      ${EXTENSIONS_DIR}/base_problems/DiffuseDomainFsi.cc
		  ${EXTENSIONS_DIR}/base_problems/LinearElasticity.cc
		  ${EXTENSIONS_DIR}/base_problems/LinearElasticityPhase.cc
    # 	      ${EXTENSIONS_DIR}/base_problems/NavierStokes_Chorin.cc
    # 	      ${EXTENSIONS_DIR}/base_problems/NavierStokesPhase_Chorin.cc
		  ${EXTENSIONS_DIR}/base_problems/NavierStokesPhase_TaylorHood.cc
		  ${EXTENSIONS_DIR}/base_problems/NavierStokes_TaylorHood.cc
		  ${EXTENSIONS_DIR}/base_problems/NavierStokes_TaylorHood_RB.cc
		  ${EXTENSIONS_DIR}/base_problems/NavierStokes_TH_MultiPhase.cc
		  ${EXTENSIONS_DIR}/base_problems/NavierStokes_TH_MultiPhase_RB.cc
		  ${EXTENSIONS_DIR}/base_problems/PhaseFieldCrystal_Base.cc
    # 	      ${EXTENSIONS_DIR}/base_problems/PhaseFieldCrystal.cc
# 		  ${EXTENSIONS_DIR}/base_problems/PhaseFieldCrystal_Phase.cc
		  ${EXTENSIONS_DIR}/base_problems/PhaseFieldCrystal_RB.cc)
	list(APPEND COMPILEFLAGS "-DHAVE_BASE_PROBLEMS=1")
	list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR}/base_problems)
	add_library(base_problems SHARED ${BASE_PROBLEMS_SRC})
	list(APPEND AMDIS_LIBS base_problems)

	FILE(GLOB HEADERS "${EXTENSIONS_DIR}/base_problems/*.h")
	INSTALL(FILES ${HEADERS}
		DESTINATION include/amdis/base_problems/)
	FILE(GLOB HEADERS "${EXTENSIONS_DIR}/base_problems/*.hh")
	INSTALL(FILES ${HEADERS}
		DESTINATION include/amdis/base_problems/)

	list(APPEND deb_add_dirs "include/amdis/base_problems")

	install(TARGETS base_problems
		LIBRARY DESTINATION lib/amdis/ )
451
    
452 453 454
      endif(ENABLE_BASE_PROBLEMS)
    endif()
  endif()
455 456
endif(ENABLE_EXTENSIONS)

457

Thomas Witkowski's avatar
Blub  
Thomas Witkowski committed
458
if(ENABLE_OPENMP)
Thomas Witkowski's avatar
Thomas Witkowski committed
459 460 461 462 463
  if(CMAKE_CXX_COMPILER MATCHES ".*icpc")
	list(APPEND COMPILEFLAGS "-openmp")
  else()
        list(APPEND COMPILEFLAGS "-fopenmp")
  endif()
Thomas Witkowski's avatar
Blub  
Thomas Witkowski committed
464 465
endif(ENABLE_OPENMP)

466
SET(COMPOSITE_SOURCE_DIR ${SOURCE_DIR}/compositeFEM)
Thomas Witkowski's avatar
Thomas Witkowski committed
467 468 469 470 471 472 473 474
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc 
		      ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc 
		      ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc 
		      ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc 
		      ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc 
		      ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc 
Naumann, Andreas's avatar
Naumann, Andreas committed
475 476
		      ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )

477 478 479 480
set(REINIT_SOURCE_DIR ${SOURCE_DIR}/reinit)
file(GLOB REINIT_SRC ${REINIT_SOURCE_DIR}/*.cc)
include_directories(${REINIT_SOURCE_DIR})

481 482

#muparser includes
483
set(MUPARSER_SOURCE_DIR ${AMDIS_SOURCE_DIR}/lib/muparser_v134)
484
file(GLOB MUPARSER_SRC ${MUPARSER_SOURCE_DIR}/src/*.cpp)
485
list(APPEND AMDIS_INCLUDE_DIRS ${MUPARSER_SOURCE_DIR}/include)
486

Naumann, Andreas's avatar
Naumann, Andreas committed
487
#mtl4 includes
488
list(APPEND AMDIS_INCLUDE_DIRS ${MTL_INCLUDE_DIR})
489
#include_directories(${MTL_INCLUDE_DIR})
490
list(APPEND AMDIS_INCLUDE_DIRS ${SOURCE_DIR})
491

492
#include_directories(${SOURCE_DIR})
493
include_directories(${AMDIS_INCLUDE_DIRS})
Naumann, Andreas's avatar
Naumann, Andreas committed
494

495
add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
Naumann, Andreas's avatar
Naumann, Andreas committed
496
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
Praetorius, Simon's avatar
Praetorius, Simon committed
497
add_library(reinit SHARED ${REINIT_SRC})
498
add_library(muparser SHARED ${MUPARSER_SRC})
499

Praetorius, Simon's avatar
Praetorius, Simon committed
500 501
#target_link_libraries(compositeFEM amdis)
#target_link_libraries(reinit amdis)
502
list(APPEND AMDIS_LIBS amdis ${Boost_LIBRARIES})
503

504
if(WIN32)
505
	list(APPEND COMPILEFLAGS "-D_SCL_SECURE_NO_WARNINGS" "-D_CRT_SECURE_NO_WARNINGS")
506
endif(WIN32)
507
message("compileflags: ${COMPILEFLAGS}")
508 509
#SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
add_definitions(${COMPILEFLAGS})
510

Naumann, Andreas's avatar
Naumann, Andreas committed
511 512 513 514
if(ENABLE_MARMOT)
	Message("please set marmotcc manually")
endif(ENABLE_MARMOT)

515
#dont change this destination. the GUI depends on it to guess the buildsystem
516

517
FILE(GLOB HEADERS "${SOURCE_DIR}/*.h")
518 519
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)
Naumann, Andreas's avatar
Naumann, Andreas committed
520 521
list(APPEND deb_add_dirs "include/amdis")

522
FILE(GLOB HEADERS "${SOURCE_DIR}/*.hh")
523 524
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)
Naumann, Andreas's avatar
Naumann, Andreas committed
525

526
FILE(GLOB HEADERS "${SOURCE_DIR}/parallel/*.h")
527 528
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/parallel/)
Naumann, Andreas's avatar
Naumann, Andreas committed
529 530
list(APPEND deb_add_dirs "include/amdis/parallel")

531 532 533 534 535
FILE(GLOB HEADERS "${SOURCE_DIR}/nonlin/*.h")
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/nonlin/)
list(APPEND deb_add_dirs "include/amdis/nonlin")

536 537 538 539 540
FILE(GLOB HEADERS "${SOURCE_DIR}/est/*.h")
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/est/)
list(APPEND deb_add_dirs "include/amdis/est")

541
FILE(GLOB HEADERS "${SOURCE_DIR}/time/*.h")
542 543
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/time/)
Naumann, Andreas's avatar
Naumann, Andreas committed
544 545
list(APPEND deb_add_dirs "include/amdis/time")

546
FILE(GLOB HEADERS "${SOURCE_DIR}/itl/*.hpp")
547 548
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/itl)
Naumann, Andreas's avatar
Naumann, Andreas committed
549 550
list(APPEND deb_add_dirs "include/amdis/itl")

551
FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.h")
Naumann, Andreas's avatar
Naumann, Andreas committed
552 553
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/io)
Naumann, Andreas's avatar
Naumann, Andreas committed
554 555
list(APPEND deb_add_dirs "include/amdis/io")

556
FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.hh")
Naumann, Andreas's avatar
Naumann, Andreas committed
557 558
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/io)
559

Praetorius, Simon's avatar
Praetorius, Simon committed
560 561 562 563 564 565 566 567 568 569
FILE(GLOB HEADERS "${REINIT_SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/reinit)
list(APPEND deb_add_dirs "include/amdis/reinit")

FILE(GLOB HEADERS "${COMPOSITE_SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/compositeFEM)
list(APPEND deb_add_dirs "include/amdis/compositeFEM")

570 571 572 573 574
FILE(GLOB HEADERS "${MUPARSER_SOURCE_DIR}/include/*.h")
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/muparser)
list(APPEND deb_add_dirs "include/amdis/muparser")

Praetorius, Simon's avatar
Praetorius, Simon committed
575
list(APPEND deb_add_dirs "lib/amdis")
576
install(TARGETS amdis compositeFEM reinit muparser
Praetorius, Simon's avatar
Praetorius, Simon committed
577 578
	LIBRARY DESTINATION lib/amdis/ )

579 580
configure_file(${AMDIS_SOURCE_DIR}/AMDISConfig.cmake.in
		${AMDIS_BINARY_DIR}/AMDISConfig.cmake
581 582
		@ONLY
	      )
583

584
INSTALL(FILES ${AMDIS_BINARY_DIR}/AMDISConfig.cmake 
585
	DESTINATION share/amdis/)
Naumann, Andreas's avatar
Naumann, Andreas committed
586 587
list(APPEND deb_add_dirs "share/amdis/")

588
INSTALL(FILES ${AMDIS_SOURCE_DIR}/AMDISUse.cmake 
589
	DESTINATION share/amdis/)
Naumann, Andreas's avatar
Naumann, Andreas committed
590

591
#install mtl
592
INSTALL(DIRECTORY ${AMDIS_SOURCE_DIR}/lib/mtl4/
593 594 595 596 597 598
	DESTINATION include/amdis/mtl4/
	FILES_MATCHING PATTERN "*.hpp"
	PATTERN ".svn" EXCLUDE
	PATTERN ".svn/*" EXCLUDE
	PATTERN "mtl4/libs" EXCLUDE
	PATTERN "mtl4/extern" EXCLUDE
599
       )
Naumann, Andreas's avatar
Naumann, Andreas committed
600
FILE(GLOB_RECURSE mtl4_files 
601 602
		RELATIVE ${AMDIS_SOURCE_DIR}/lib/mtl4/boost/ 
		${AMDIS_SOURCE_DIR}/lib/mtl4/boost/*.hpp)
Naumann, Andreas's avatar
Naumann, Andreas committed
603 604
foreach(mtl4_file in ${mtl4_files})
 get_filename_component(mtl4File_path ${mtl4_file} PATH)
605
 list(APPEND deb_add_dirs "include/amdis/mtl4/boost/${mtl4File_path}")
Naumann, Andreas's avatar
Naumann, Andreas committed
606 607
endforeach(mtl4_file)
list(REMOVE_DUPLICATES deb_add_dirs)
608 609

#PACKAGES
610
set(CPACK_PACKAGE_NAME "AMDIS")
611
set(CPACK_PACKAGE_CONTACT "Andreas.Naumann@tu-dresden.de")
612
set(CPACK_PACKAGE_VERSION "${CurrentRevision}")
613 614 615
set(CPACK_GENERATOR "RPM" "DEB" "TGZ")
set(CPACK_INSTALL_PREFIX "/usr/")

616 617
configure_file(${AMDIS_SOURCE_DIR}/preinst.in 
  ${AMDIS_BINARY_DIR}/preinst 
Naumann, Andreas's avatar
Naumann, Andreas committed
618 619
  @ONLY)

620 621
configure_file(${AMDIS_SOURCE_DIR}/postrm.in 
  ${AMDIS_BINARY_DIR}/postrm 
Naumann, Andreas's avatar
Naumann, Andreas committed
622
  @ONLY)
623 624
set(CPACK_RPM_PACKAGE_REQUIRES "boost-devel == 1.42, ${RPM_DEPEND_STR}")
set(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-dev (== 1.42), libboost-iostreams-dev (== 1.42), libboost-system-dev (== 1.42), libboost-filesystem-dev (== 1.42)")
625
set(CPACK_DEBIAN_PACKAGE_CONTROL_EXTRA "${AMDIS_BINARY_DIR}/preinst" "${AMDIS_BINARY_DIR}/postrm")
Naumann, Andreas's avatar
Naumann, Andreas committed
626

627
include(CPack)