CMakeLists.txt 10.2 KB
Newer Older
1
project(AMDiS)
Naumann, Andreas's avatar
Naumann, Andreas committed
2

3 4 5
cmake_minimum_required(VERSION 2.8)

set(AMDiS_SOURCE_DIR "${AMDiS_SOURCE_DIR}/src")
Naumann, Andreas's avatar
Naumann, Andreas committed
6 7 8

#needs: --enable-debug, enable-intel --enable-openmp --enable-parmetis --enable-parallel-domain --enable-umfpack --enable-mkl --enable-boost --enable-marmot

9
#TODO: use the cmake build type
Naumann, Andreas's avatar
Naumann, Andreas committed
10 11 12 13 14 15 16 17 18 19 20 21
option(ENABLE_DEBUG "debug" false)
#option(ENABLE_INTEL "use intel compiler" false)
option(ENABLE_OPENMP "use openmp" false)
option(ENABLE_PARMETIS "use partion of unity and enable parmetis" false)
option(ENABLE_PARALLEL_DOMAIN "use parallel domain decomposition" false)
SET(PETSC_DIR "" CACHE STRING "Petsc directory for parallel domain decomposition" )
SET(PETSC_ARCH "" CACHE STRING "Petsc architecture")
option(ENABLE_UMFPACK "use umfpack solver" false)
option(ENABLE_MKL "use the mkl" false)
SET(MKL_DIR "" CACHE STRING "MKL directory")
option(ENABLE_DUNE "use dune" false)
SET(DUNE_DIR "" CACHE STRING "Dune directory")
22
#option(ENABLE_BOOST "use the boost library" false)
Naumann, Andreas's avatar
Naumann, Andreas committed
23 24 25 26 27 28 29 30 31 32 33 34 35
option(ENABLE_MARMOT "use marmot" false)
option(ENABLE_GUI "compile the gui" false)
#option(ENABLE_TESTS "compile the tests" false)
SET(ENABLE_TESTS false)

if(ENABLE_INTEL)
	Message("please set the icc manually")
	INCLUDE (CMakeForceCompiler)
	CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
	CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
	#SET(CMAKE_C_COMPILER "icc")
endif(ENABLE_INTEL)

36
#if(ENABLE_BOOST)
Naumann, Andreas's avatar
Naumann, Andreas committed
37 38
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_BOOST=1")
	find_package(Boost 1.42 REQUIRED)
39
#endif(ENABLE_BOOST)
Naumann, Andreas's avatar
Naumann, Andreas committed
40

Naumann, Andreas's avatar
Naumann, Andreas committed
41
SET(LIB_DIR ./lib)
42
SET(SOURCE_DIR ${AMDiS_SOURCE_DIR})
43 44 45 46 47 48 49 50 51 52 53
SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc 
	      ${SOURCE_DIR}/GNUPlotWriter.cc 
	      ${SOURCE_DIR}/VertexVector.cc 
	      ${SOURCE_DIR}/PeriodicBC.cc 
	      ${SOURCE_DIR}/Recovery.cc 
	      ${SOURCE_DIR}/RecoveryEstimator.cc 
	      ${SOURCE_DIR}/ResidualEstimator.cc 
	      ${SOURCE_DIR}/Cholesky.cc 
	      ${SOURCE_DIR}/AdaptBase.cc
	      ${SOURCE_DIR}/StandardProblemIteration.cc 
	      ${SOURCE_DIR}/ProblemScal.cc 
54 55
	      ${SOURCE_DIR}/ProblemVec.cc
	      ${SOURCE_DIR}/ProblemImplicit.cc 
56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137
	      ${SOURCE_DIR}/ProblemVecDbg.cc 
	      ${SOURCE_DIR}/DualTraverse.cc 
	      ${SOURCE_DIR}/ElementData.cc 
	      ${SOURCE_DIR}/ComponentTraverseInfo.cc 
	      ${SOURCE_DIR}/CreatorMap.cc 
	      ${SOURCE_DIR}/ProblemInterpolScal.cc 
	      ${SOURCE_DIR}/ProblemInterpolVec.cc 
	      ${SOURCE_DIR}/MacroReader.cc 
	      ${SOURCE_DIR}/ValueReader.cc 
	      ${SOURCE_DIR}/Projection.cc 
	      ${SOURCE_DIR}/SubAssembler.cc 
	      ${SOURCE_DIR}/ZeroOrderAssembler.cc 
	      ${SOURCE_DIR}/FirstOrderAssembler.cc 
	      ${SOURCE_DIR}/SecondOrderAssembler.cc 
	      ${SOURCE_DIR}/Assembler.cc 
	      ${SOURCE_DIR}/AdaptInfo.cc 
	      ${SOURCE_DIR}/Marker.cc 
	      ${SOURCE_DIR}/SurfaceQuadrature.cc 
	      ${SOURCE_DIR}/LeafData.cc 
	      ${SOURCE_DIR}/BoundaryManager.cc 
	      ${SOURCE_DIR}/DirichletBC.cc 
	      ${SOURCE_DIR}/RobinBC.cc  
	      ${SOURCE_DIR}/FileWriter.cc 
	      ${SOURCE_DIR}/ElementFileWriter.cc 
	      ${SOURCE_DIR}/ElInfo.cc 
	      ${SOURCE_DIR}/ElInfoStack.cc 
	      ${SOURCE_DIR}/OperatorTerm.cc 
              ${SOURCE_DIR}/ZeroOrderTerm.cc 
	      ${SOURCE_DIR}/FirstOrderTerm.cc 
	      ${SOURCE_DIR}/SecondOrderTerm.cc 
              ${SOURCE_DIR}/Operator.cc 
	      ${SOURCE_DIR}/Mesh.cc 
	      ${SOURCE_DIR}/MeshStructure.cc 
	      ${SOURCE_DIR}/AdaptStationary.cc  
	      ${SOURCE_DIR}/AdaptInstationary.cc
	      ${SOURCE_DIR}/DOFVector.cc 
	      ${SOURCE_DIR}/Estimator.cc 
	      ${SOURCE_DIR}/ProblemInstat.cc 
	      ${SOURCE_DIR}/ProblemNonLin.cc 
	      ${SOURCE_DIR}/NonLinUpdater.cc 
	      ${SOURCE_DIR}/QPsiPhi.cc 
	      ${SOURCE_DIR}/BasisFunction.cc 
	      ${SOURCE_DIR}/Boundary.cc 
	      ${SOURCE_DIR}/CoarseningManager.cc 
	      ${SOURCE_DIR}/CoarseningManager1d.cc 
	      ${SOURCE_DIR}/CoarseningManager2d.cc 
	      ${SOURCE_DIR}/CoarseningManager3d.cc 
	      ${SOURCE_DIR}/DOFAdmin.cc 
	      ${SOURCE_DIR}/DOFMatrix.cc 
	      ${SOURCE_DIR}/Element.cc 
	      ${SOURCE_DIR}/ElInfo1d.cc 
	      ${SOURCE_DIR}/ElInfo2d.cc 
	      ${SOURCE_DIR}/ElInfo3d.cc 
	      ${SOURCE_DIR}/FiniteElemSpace.cc 
	      ${SOURCE_DIR}/FixVec.cc 
	      ${SOURCE_DIR}/Global.cc 
	      ${SOURCE_DIR}/Lagrange.cc 
	      ${SOURCE_DIR}/Line.cc 
	      ${SOURCE_DIR}/MacroElement.cc 
	      ${SOURCE_DIR}/MacroWriter.cc 
	      ${SOURCE_DIR}/Parameters.cc 
	      ${SOURCE_DIR}/Parametric.cc 
	      ${SOURCE_DIR}/Quadrature.cc 
	      ${SOURCE_DIR}/RCNeighbourList.cc 
	      ${SOURCE_DIR}/RefinementManager.cc 
	      ${SOURCE_DIR}/RefinementManager1d.cc 
	      ${SOURCE_DIR}/RefinementManager2d.cc 
	      ${SOURCE_DIR}/RefinementManager3d.cc 
	      ${SOURCE_DIR}/Tetrahedron.cc 
	      ${SOURCE_DIR}/Traverse.cc 
	      ${SOURCE_DIR}/TraverseParallel.cc 
	      ${SOURCE_DIR}/Triangle.cc 
	      ${SOURCE_DIR}/TecPlotWriter.cc 
	      ${SOURCE_DIR}/ValueWriter.cc 
	      ${SOURCE_DIR}/VtkWriter.cc 
	      ${SOURCE_DIR}/PngWriter.cc 
	      ${SOURCE_DIR}/PovrayWriter.cc 
	      ${SOURCE_DIR}/DataCollector.cc 
	      ${SOURCE_DIR}/ScalableQuadrature.cc 
	      ${SOURCE_DIR}/SubElInfo.cc 
	      ${SOURCE_DIR}/parallel/InteriorBoundary.cc 
	      ${SOURCE_DIR}/ElementDofIterator.cc 
Naumann, Andreas's avatar
Naumann, Andreas committed
138
	      ${SOURCE_DIR}/Debug.cc
139 140 141
              ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockStationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockMethod.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
142 143 144 145 146 147 148 149 150 151 152 153 154
	      )

if(ENABLE_PARMETIS)
	find_package(MPI REQUIRED)
	INCLUDE (CMakeForceCompiler)	
	CMAKE_FORCE_C_COMPILER(mpicc "MPI C compiler")
	CMAKE_FORCE_CXX_COMPILER(mpiCC "MPI C++ compiler")

	include_directories( ${LIB_DIR}/ParMetis-3.1)
	SET(PARALLEL_AMDIS_SRC  ${SOURCE_DIR}/ConditionalEstimator.cc ${SOURCE_DIR}/ConditionalMarker.cc 
				${SOURCE_DIR}/ParallelProblem.cc ${SOURCE_DIR}/ParMetisPartitioner.cc 
				${SOURCE_DIR}/PollutionError.cc)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_AMDIS=1")
155 156 157 158 159
	INSTALL(FILES ${LIB_DIR}/ParMetis-3.1/parmetis.h
			${LIB_DIR}/ParMetis-3.1/libparmetis.a
			${LIB_DIR}/ParMetis-3.1/libmetis.a
			DESTINATION amdis/parmetis
	       )
Naumann, Andreas's avatar
Naumann, Andreas committed
160 161 162 163 164
endif(ENABLE_PARMETIS)

if(ENABLE_PARALLEL_DOMAIN)
	include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
	SET(PARALLEL_DOMAIN_AMDIS_SRC
165
		${SOURCE_DIR}/parallel/MeshDistributor.cc 
Naumann, Andreas's avatar
Naumann, Andreas committed
166
		${SOURCE_DIR}/parallel/StdMpi.cc
167
		${SOURCE_DIR}/parallel/ParallelDebug.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
168
		${SOURCE_DIR}/parallel/GlobalMatrixSolver.cc
169 170
		${SOURCE_DIR}/parallel/MpiHelper.cc
		${SOURCE_DIR}/parallel/ElementObjectData.cc)
Naumann, Andreas's avatar
Naumann, Andreas committed
171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_DOMAIN_AMDIS=1")
endif(ENABLE_PARALLEL_DOMAIN)

if(ENABLE_DEBUG)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -g -O0 -DDEBUG=1")
endif(ENABLE_DEBUG)

if(ENABLE_OPENMP)
	if(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -openmp")
	else(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -fopenmp")
	endif(ENABLE_INTEL)
endif(ENABLE_OPENMP)

if(ENABLE_UMFPACK)
	include_directories(${LIB_DIR}/UFconfig ${LIB_DIR}/AMD/Include ${LIB_DIR}/UMFPACK/Include)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK")
189 190 191 192 193 194 195 196 197 198 199 200 201 202 203
	FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/UMFPACK/Include/*.h")
	  INSTALL(FILES ${UMFPACK_HEADERS} DESTINATION amdis/umfpack/include)

	  FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/AMD/Include/*.h")
	    INSTALL(FILES ${UMFPACK_HEADERS} DESTINATION amdis/amd/include)

	  FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/*.h")
	    INSTALL(FILES ${HEADERS} DESTINATION amdis/ufconfig/)

	  FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/xerbla/*.h")
	    INSTALL(FILES ${HEADERS} DESTINATION amdis/ufconfig/xerbla)

	  INSTALL(FILES ${LIB_DIR}/UMFPACK/Lib/libumfpack.a DESTINATION amdis/umfpack/)
	  INSTALL(FILES ${LIB_DIR}/AMD/Lib/libamd.a DESTINATION amdis/amd/)

Naumann, Andreas's avatar
Naumann, Andreas committed
204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229
endif(ENABLE_UMFPACK)

if(ENABLE_MKL)
	include_directories(${MKL_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_MKL=1")
endif(ENABLE_MKL)

if(ENABLE_DUNE)
	include_directories(${DUNE_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_DUNE=1")
endif(ENABLE_DUNE)

SET(COMPOSITE_SOURCE_DIR compositeFEM/src)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc 
		      ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc 
		      ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )

#mtl4 includes
include_directories(${LIB_DIR}/mtl4)
include_directories(${SOURCE_DIR})

add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})

230
message("compileflags: ${COMPILEFLAGS}")
Naumann, Andreas's avatar
Naumann, Andreas committed
231 232 233 234 235 236
SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
if(ENABLE_MARMOT)
	Message("please set marmotcc manually")
endif(ENABLE_MARMOT)

install(TARGETS amdis compositeFEM 
237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253
	LIBRARY DESTINATION amdis/lib )

FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS} DESTINATION amdis/include)
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.hh")
INSTALL(FILES ${HEADERS} DESTINATION amdis/include)
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/parallel/*.h")
INSTALL(FILES ${HEADERS} DESTINATION amdis/include/parallel/)
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/time/*.h")
INSTALL(FILES ${HEADERS} DESTINATION amdis/include/time/)

configure_file(${AMDiS_BINARY_DIR}/AMDiSConfig.cmake.in
		${AMDiS_BINARY_DIR}/AMDiSConfig.cmake
		@ONLY
	      )
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSConfig.cmake DESTINATION amdis/)
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSUse.cmake DESTINATION amdis/)
Naumann, Andreas's avatar
Naumann, Andreas committed
254

255 256 257 258 259 260 261
#install mtl
INSTALL(DIRECTORY ${CMAKE_BINARY_DIR}/lib/mtl4/
		DESTINATION amdis/mtl4
		FILES_MATCHING PATTERN "*.hpp"
		PATTERN ".svn" EXCLUDE
		PATTERN ".svn/*" EXCLUDE
       )
Naumann, Andreas's avatar
Naumann, Andreas committed
262 263 264 265
if(ENABLE_GUI)
	add_subdirectory(other/tools/amdis_gui)
endif(ENABLE_GUI)

266 267 268 269 270 271
set(CPACK_PACKAGE_CONTACT "Me")
set(CPACK_BINARY_DEB "on")
set(CPACK_BINARY_RPM "on")
#set(CPACK_SET_DESTDIR "true")
set(CPACK_INSTALL_PREFIX "")
include(CPack)
Naumann, Andreas's avatar
Naumann, Andreas committed
272 273 274 275 276 277
if(ENABLE_TESTS)
#ENABLE_TESTING()
#add_test(demo_test run_test.sh)

#add_test(demo_test ${CMAKE_CTEST_COMMAND} --build-and-test "${CMAKE_SOURCE_DIR}/test/demo_test" "${CMAKE_BINARY_DIR}/test/demo_test" --build-generator "${CMAKE_GENERATOR}" --build-makeprogram "${CMAKE_MAKE_PROGRAM}" "${CMAKE_BINARY_DIR}/test/demo_test")
endif(ENABLE_TESTS)