CMakeLists.txt 9.37 KB
Newer Older
1
project(AMDiS)
Naumann, Andreas's avatar
Naumann, Andreas committed
2

3 4 5
cmake_minimum_required(VERSION 2.8)

set(AMDiS_SOURCE_DIR "${AMDiS_SOURCE_DIR}/src")
Naumann, Andreas's avatar
Naumann, Andreas committed
6 7 8

#needs: --enable-debug, enable-intel --enable-openmp --enable-parmetis --enable-parallel-domain --enable-umfpack --enable-mkl --enable-boost --enable-marmot

9
#TODO: use the cmake build type
Naumann, Andreas's avatar
Naumann, Andreas committed
10 11 12 13 14 15 16 17 18 19 20 21
option(ENABLE_DEBUG "debug" false)
#option(ENABLE_INTEL "use intel compiler" false)
option(ENABLE_OPENMP "use openmp" false)
option(ENABLE_PARMETIS "use partion of unity and enable parmetis" false)
option(ENABLE_PARALLEL_DOMAIN "use parallel domain decomposition" false)
SET(PETSC_DIR "" CACHE STRING "Petsc directory for parallel domain decomposition" )
SET(PETSC_ARCH "" CACHE STRING "Petsc architecture")
option(ENABLE_UMFPACK "use umfpack solver" false)
option(ENABLE_MKL "use the mkl" false)
SET(MKL_DIR "" CACHE STRING "MKL directory")
option(ENABLE_DUNE "use dune" false)
SET(DUNE_DIR "" CACHE STRING "Dune directory")
22
#option(ENABLE_BOOST "use the boost library" false)
Naumann, Andreas's avatar
Naumann, Andreas committed
23 24 25 26 27 28 29 30 31 32 33 34 35
option(ENABLE_MARMOT "use marmot" false)
option(ENABLE_GUI "compile the gui" false)
#option(ENABLE_TESTS "compile the tests" false)
SET(ENABLE_TESTS false)

if(ENABLE_INTEL)
	Message("please set the icc manually")
	INCLUDE (CMakeForceCompiler)
	CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
	CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
	#SET(CMAKE_C_COMPILER "icc")
endif(ENABLE_INTEL)

36
#if(ENABLE_BOOST)
Naumann, Andreas's avatar
Naumann, Andreas committed
37 38
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_BOOST=1")
	find_package(Boost 1.42 REQUIRED)
39
#endif(ENABLE_BOOST)
Naumann, Andreas's avatar
Naumann, Andreas committed
40

Naumann, Andreas's avatar
Naumann, Andreas committed
41
SET(LIB_DIR ./lib)
42
SET(SOURCE_DIR ${AMDiS_SOURCE_DIR})
43 44 45 46 47 48 49 50 51 52 53
SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc 
	      ${SOURCE_DIR}/GNUPlotWriter.cc 
	      ${SOURCE_DIR}/VertexVector.cc 
	      ${SOURCE_DIR}/PeriodicBC.cc 
	      ${SOURCE_DIR}/Recovery.cc 
	      ${SOURCE_DIR}/RecoveryEstimator.cc 
	      ${SOURCE_DIR}/ResidualEstimator.cc 
	      ${SOURCE_DIR}/Cholesky.cc 
	      ${SOURCE_DIR}/AdaptBase.cc
	      ${SOURCE_DIR}/StandardProblemIteration.cc 
	      ${SOURCE_DIR}/ProblemScal.cc 
54 55
	      ${SOURCE_DIR}/ProblemVec.cc
	      ${SOURCE_DIR}/ProblemImplicit.cc 
56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137
	      ${SOURCE_DIR}/ProblemVecDbg.cc 
	      ${SOURCE_DIR}/DualTraverse.cc 
	      ${SOURCE_DIR}/ElementData.cc 
	      ${SOURCE_DIR}/ComponentTraverseInfo.cc 
	      ${SOURCE_DIR}/CreatorMap.cc 
	      ${SOURCE_DIR}/ProblemInterpolScal.cc 
	      ${SOURCE_DIR}/ProblemInterpolVec.cc 
	      ${SOURCE_DIR}/MacroReader.cc 
	      ${SOURCE_DIR}/ValueReader.cc 
	      ${SOURCE_DIR}/Projection.cc 
	      ${SOURCE_DIR}/SubAssembler.cc 
	      ${SOURCE_DIR}/ZeroOrderAssembler.cc 
	      ${SOURCE_DIR}/FirstOrderAssembler.cc 
	      ${SOURCE_DIR}/SecondOrderAssembler.cc 
	      ${SOURCE_DIR}/Assembler.cc 
	      ${SOURCE_DIR}/AdaptInfo.cc 
	      ${SOURCE_DIR}/Marker.cc 
	      ${SOURCE_DIR}/SurfaceQuadrature.cc 
	      ${SOURCE_DIR}/LeafData.cc 
	      ${SOURCE_DIR}/BoundaryManager.cc 
	      ${SOURCE_DIR}/DirichletBC.cc 
	      ${SOURCE_DIR}/RobinBC.cc  
	      ${SOURCE_DIR}/FileWriter.cc 
	      ${SOURCE_DIR}/ElementFileWriter.cc 
	      ${SOURCE_DIR}/ElInfo.cc 
	      ${SOURCE_DIR}/ElInfoStack.cc 
	      ${SOURCE_DIR}/OperatorTerm.cc 
              ${SOURCE_DIR}/ZeroOrderTerm.cc 
	      ${SOURCE_DIR}/FirstOrderTerm.cc 
	      ${SOURCE_DIR}/SecondOrderTerm.cc 
              ${SOURCE_DIR}/Operator.cc 
	      ${SOURCE_DIR}/Mesh.cc 
	      ${SOURCE_DIR}/MeshStructure.cc 
	      ${SOURCE_DIR}/AdaptStationary.cc  
	      ${SOURCE_DIR}/AdaptInstationary.cc
	      ${SOURCE_DIR}/DOFVector.cc 
	      ${SOURCE_DIR}/Estimator.cc 
	      ${SOURCE_DIR}/ProblemInstat.cc 
	      ${SOURCE_DIR}/ProblemNonLin.cc 
	      ${SOURCE_DIR}/NonLinUpdater.cc 
	      ${SOURCE_DIR}/QPsiPhi.cc 
	      ${SOURCE_DIR}/BasisFunction.cc 
	      ${SOURCE_DIR}/Boundary.cc 
	      ${SOURCE_DIR}/CoarseningManager.cc 
	      ${SOURCE_DIR}/CoarseningManager1d.cc 
	      ${SOURCE_DIR}/CoarseningManager2d.cc 
	      ${SOURCE_DIR}/CoarseningManager3d.cc 
	      ${SOURCE_DIR}/DOFAdmin.cc 
	      ${SOURCE_DIR}/DOFMatrix.cc 
	      ${SOURCE_DIR}/Element.cc 
	      ${SOURCE_DIR}/ElInfo1d.cc 
	      ${SOURCE_DIR}/ElInfo2d.cc 
	      ${SOURCE_DIR}/ElInfo3d.cc 
	      ${SOURCE_DIR}/FiniteElemSpace.cc 
	      ${SOURCE_DIR}/FixVec.cc 
	      ${SOURCE_DIR}/Global.cc 
	      ${SOURCE_DIR}/Lagrange.cc 
	      ${SOURCE_DIR}/Line.cc 
	      ${SOURCE_DIR}/MacroElement.cc 
	      ${SOURCE_DIR}/MacroWriter.cc 
	      ${SOURCE_DIR}/Parameters.cc 
	      ${SOURCE_DIR}/Parametric.cc 
	      ${SOURCE_DIR}/Quadrature.cc 
	      ${SOURCE_DIR}/RCNeighbourList.cc 
	      ${SOURCE_DIR}/RefinementManager.cc 
	      ${SOURCE_DIR}/RefinementManager1d.cc 
	      ${SOURCE_DIR}/RefinementManager2d.cc 
	      ${SOURCE_DIR}/RefinementManager3d.cc 
	      ${SOURCE_DIR}/Tetrahedron.cc 
	      ${SOURCE_DIR}/Traverse.cc 
	      ${SOURCE_DIR}/TraverseParallel.cc 
	      ${SOURCE_DIR}/Triangle.cc 
	      ${SOURCE_DIR}/TecPlotWriter.cc 
	      ${SOURCE_DIR}/ValueWriter.cc 
	      ${SOURCE_DIR}/VtkWriter.cc 
	      ${SOURCE_DIR}/PngWriter.cc 
	      ${SOURCE_DIR}/PovrayWriter.cc 
	      ${SOURCE_DIR}/DataCollector.cc 
	      ${SOURCE_DIR}/ScalableQuadrature.cc 
	      ${SOURCE_DIR}/SubElInfo.cc 
	      ${SOURCE_DIR}/parallel/InteriorBoundary.cc 
	      ${SOURCE_DIR}/ElementDofIterator.cc 
Naumann, Andreas's avatar
Naumann, Andreas committed
138
	      ${SOURCE_DIR}/Debug.cc
139 140 141
              ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockStationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockMethod.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
	      )

if(ENABLE_PARMETIS)
	find_package(MPI REQUIRED)
	INCLUDE (CMakeForceCompiler)	
	CMAKE_FORCE_C_COMPILER(mpicc "MPI C compiler")
	CMAKE_FORCE_CXX_COMPILER(mpiCC "MPI C++ compiler")

	include_directories( ${LIB_DIR}/ParMetis-3.1)
	SET(PARALLEL_AMDIS_SRC  ${SOURCE_DIR}/ConditionalEstimator.cc ${SOURCE_DIR}/ConditionalMarker.cc 
				${SOURCE_DIR}/ParallelProblem.cc ${SOURCE_DIR}/ParMetisPartitioner.cc 
				${SOURCE_DIR}/PollutionError.cc)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_AMDIS=1")
endif(ENABLE_PARMETIS)

if(ENABLE_PARALLEL_DOMAIN)
	include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
	SET(PARALLEL_DOMAIN_AMDIS_SRC
160
		${SOURCE_DIR}/parallel/MeshDistributor.cc 
Naumann, Andreas's avatar
Naumann, Andreas committed
161
		${SOURCE_DIR}/parallel/StdMpi.cc
162
		${SOURCE_DIR}/parallel/ParallelDebug.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
163
		${SOURCE_DIR}/parallel/GlobalMatrixSolver.cc
164 165
		${SOURCE_DIR}/parallel/MpiHelper.cc
		${SOURCE_DIR}/parallel/ElementObjectData.cc)
Naumann, Andreas's avatar
Naumann, Andreas committed
166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_DOMAIN_AMDIS=1")
endif(ENABLE_PARALLEL_DOMAIN)

if(ENABLE_DEBUG)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -g -O0 -DDEBUG=1")
endif(ENABLE_DEBUG)

if(ENABLE_OPENMP)
	if(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -openmp")
	else(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -fopenmp")
	endif(ENABLE_INTEL)
endif(ENABLE_OPENMP)

if(ENABLE_UMFPACK)
	include_directories(${LIB_DIR}/UFconfig ${LIB_DIR}/AMD/Include ${LIB_DIR}/UMFPACK/Include)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK")
endif(ENABLE_UMFPACK)

if(ENABLE_MKL)
	include_directories(${MKL_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_MKL=1")
endif(ENABLE_MKL)

if(ENABLE_DUNE)
	include_directories(${DUNE_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_DUNE=1")
endif(ENABLE_DUNE)

SET(COMPOSITE_SOURCE_DIR compositeFEM/src)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc 
		      ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc 
		      ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )

#mtl4 includes
include_directories(${LIB_DIR}/mtl4)
include_directories(${SOURCE_DIR})

add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})

210
message("compileflags: ${COMPILEFLAGS}")
Naumann, Andreas's avatar
Naumann, Andreas committed
211 212 213 214 215 216
SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
if(ENABLE_MARMOT)
	Message("please set marmotcc manually")
endif(ENABLE_MARMOT)

install(TARGETS amdis compositeFEM 
217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233
	LIBRARY DESTINATION amdis/lib )

FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS} DESTINATION amdis/include)
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.hh")
INSTALL(FILES ${HEADERS} DESTINATION amdis/include)
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/parallel/*.h")
INSTALL(FILES ${HEADERS} DESTINATION amdis/include/parallel/)
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/time/*.h")
INSTALL(FILES ${HEADERS} DESTINATION amdis/include/time/)

configure_file(${AMDiS_BINARY_DIR}/AMDiSConfig.cmake.in
		${AMDiS_BINARY_DIR}/AMDiSConfig.cmake
		@ONLY
	      )
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSConfig.cmake DESTINATION amdis/)
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSUse.cmake DESTINATION amdis/)
Naumann, Andreas's avatar
Naumann, Andreas committed
234

235 236 237 238 239 240 241
#install mtl
INSTALL(DIRECTORY ${CMAKE_BINARY_DIR}/lib/mtl4/
		DESTINATION amdis/mtl4
		FILES_MATCHING PATTERN "*.hpp"
		PATTERN ".svn" EXCLUDE
		PATTERN ".svn/*" EXCLUDE
       )
Naumann, Andreas's avatar
Naumann, Andreas committed
242 243 244 245
if(ENABLE_GUI)
	add_subdirectory(other/tools/amdis_gui)
endif(ENABLE_GUI)

246 247 248 249 250 251
set(CPACK_PACKAGE_CONTACT "Me")
set(CPACK_BINARY_DEB "on")
set(CPACK_BINARY_RPM "on")
#set(CPACK_SET_DESTDIR "true")
set(CPACK_INSTALL_PREFIX "")
include(CPack)
Naumann, Andreas's avatar
Naumann, Andreas committed
252 253 254 255 256 257
if(ENABLE_TESTS)
#ENABLE_TESTING()
#add_test(demo_test run_test.sh)

#add_test(demo_test ${CMAKE_CTEST_COMMAND} --build-and-test "${CMAKE_SOURCE_DIR}/test/demo_test" "${CMAKE_BINARY_DIR}/test/demo_test" --build-generator "${CMAKE_GENERATOR}" --build-makeprogram "${CMAKE_MAKE_PROGRAM}" "${CMAKE_BINARY_DIR}/test/demo_test")
endif(ENABLE_TESTS)