CMakeLists.txt 11.2 KB
Newer Older
1
project(AMDiS)
Naumann, Andreas's avatar
Naumann, Andreas committed
2

3
4
5
cmake_minimum_required(VERSION 2.8)

set(AMDiS_SOURCE_DIR "${AMDiS_SOURCE_DIR}/src")
Naumann, Andreas's avatar
Naumann, Andreas committed
6
7
8

#needs: --enable-debug, enable-intel --enable-openmp --enable-parmetis --enable-parallel-domain --enable-umfpack --enable-mkl --enable-boost --enable-marmot

9
10
11
SET(LIB_DIR ./lib)
SET(SOURCE_DIR ${AMDiS_SOURCE_DIR})

12
#TODO: use the cmake build type
13
14
SET(MTL_DIR ${LIB_DIR}/mtl4/ CACHE PATH "mtl4 directory")

Naumann, Andreas's avatar
Naumann, Andreas committed
15
16
17
18
19
option(ENABLE_DEBUG "debug" false)
#option(ENABLE_INTEL "use intel compiler" false)
option(ENABLE_OPENMP "use openmp" false)
option(ENABLE_PARMETIS "use partion of unity and enable parmetis" false)
option(ENABLE_PARALLEL_DOMAIN "use parallel domain decomposition" false)
20
SET(PETSC_DIR "" CACHE PATH "Petsc directory for parallel domain decomposition" )
Naumann, Andreas's avatar
Naumann, Andreas committed
21
22
23
SET(PETSC_ARCH "" CACHE STRING "Petsc architecture")
option(ENABLE_UMFPACK "use umfpack solver" false)
option(ENABLE_MKL "use the mkl" false)
24
SET(MKL_DIR "" CACHE PATH "MKL directory")
Naumann, Andreas's avatar
Naumann, Andreas committed
25
option(ENABLE_DUNE "use dune" false)
26
SET(DUNE_DIR "" CACHE PATH "Dune directory")
27
#option(ENABLE_BOOST "use the boost library" false)
Naumann, Andreas's avatar
Naumann, Andreas committed
28
29
30
31
32
33
34
35
36
37
38
39
40
option(ENABLE_MARMOT "use marmot" false)
option(ENABLE_GUI "compile the gui" false)
#option(ENABLE_TESTS "compile the tests" false)
SET(ENABLE_TESTS false)

if(ENABLE_INTEL)
	Message("please set the icc manually")
	INCLUDE (CMakeForceCompiler)
	CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
	CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
	#SET(CMAKE_C_COMPILER "icc")
endif(ENABLE_INTEL)

41
#if(ENABLE_BOOST)
Naumann, Andreas's avatar
Naumann, Andreas committed
42
43
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_BOOST=1")
	find_package(Boost 1.42 REQUIRED)
44
45
46
47
48
49
50
51
52
53
        if(Boost_FOUND)
		include_directories(${Boost_INCLUDE_DIR})
		message("boost lib-dirs: ${Boost_LIBRARY_DIRS}")
		message("use the boost dir: ${Boost_INCLUDE_DIR}")
		if(WIN32)
			message("the windows find_boost does not set the boost library paths, please set it")
			SET(Boost_LIBRARY_DIRS CACHE PATH "The directory containing the boost libraries")
		endif(WIN32)		
		link_directories(${Boost_LIBRARY_DIRS})
	endif(Boost_FOUND)
54
#endif(ENABLE_BOOST)
Naumann, Andreas's avatar
Naumann, Andreas committed
55

Naumann, Andreas's avatar
Naumann, Andreas committed
56
SET(LIB_DIR ./lib)
57
SET(SOURCE_DIR ${AMDiS_SOURCE_DIR})
58
59
60
61
62
63
64
65
66
67
68
SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc 
	      ${SOURCE_DIR}/GNUPlotWriter.cc 
	      ${SOURCE_DIR}/VertexVector.cc 
	      ${SOURCE_DIR}/PeriodicBC.cc 
	      ${SOURCE_DIR}/Recovery.cc 
	      ${SOURCE_DIR}/RecoveryEstimator.cc 
	      ${SOURCE_DIR}/ResidualEstimator.cc 
	      ${SOURCE_DIR}/Cholesky.cc 
	      ${SOURCE_DIR}/AdaptBase.cc
	      ${SOURCE_DIR}/StandardProblemIteration.cc 
	      ${SOURCE_DIR}/ProblemScal.cc 
69
70
	      ${SOURCE_DIR}/ProblemVec.cc
	      ${SOURCE_DIR}/ProblemImplicit.cc 
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
	      ${SOURCE_DIR}/ProblemVecDbg.cc 
	      ${SOURCE_DIR}/DualTraverse.cc 
	      ${SOURCE_DIR}/ElementData.cc 
	      ${SOURCE_DIR}/ComponentTraverseInfo.cc 
	      ${SOURCE_DIR}/CreatorMap.cc 
	      ${SOURCE_DIR}/ProblemInterpolScal.cc 
	      ${SOURCE_DIR}/ProblemInterpolVec.cc 
	      ${SOURCE_DIR}/MacroReader.cc 
	      ${SOURCE_DIR}/ValueReader.cc 
	      ${SOURCE_DIR}/Projection.cc 
	      ${SOURCE_DIR}/SubAssembler.cc 
	      ${SOURCE_DIR}/ZeroOrderAssembler.cc 
	      ${SOURCE_DIR}/FirstOrderAssembler.cc 
	      ${SOURCE_DIR}/SecondOrderAssembler.cc 
	      ${SOURCE_DIR}/Assembler.cc 
	      ${SOURCE_DIR}/AdaptInfo.cc 
	      ${SOURCE_DIR}/Marker.cc 
	      ${SOURCE_DIR}/SurfaceQuadrature.cc 
	      ${SOURCE_DIR}/LeafData.cc 
	      ${SOURCE_DIR}/BoundaryManager.cc 
	      ${SOURCE_DIR}/DirichletBC.cc 
	      ${SOURCE_DIR}/RobinBC.cc  
	      ${SOURCE_DIR}/FileWriter.cc 
	      ${SOURCE_DIR}/ElementFileWriter.cc 
	      ${SOURCE_DIR}/ElInfo.cc 
	      ${SOURCE_DIR}/ElInfoStack.cc 
	      ${SOURCE_DIR}/OperatorTerm.cc 
              ${SOURCE_DIR}/ZeroOrderTerm.cc 
	      ${SOURCE_DIR}/FirstOrderTerm.cc 
	      ${SOURCE_DIR}/SecondOrderTerm.cc 
              ${SOURCE_DIR}/Operator.cc 
	      ${SOURCE_DIR}/Mesh.cc 
	      ${SOURCE_DIR}/MeshStructure.cc 
	      ${SOURCE_DIR}/AdaptStationary.cc  
	      ${SOURCE_DIR}/AdaptInstationary.cc
	      ${SOURCE_DIR}/DOFVector.cc 
	      ${SOURCE_DIR}/Estimator.cc 
	      ${SOURCE_DIR}/ProblemInstat.cc 
	      ${SOURCE_DIR}/ProblemNonLin.cc 
	      ${SOURCE_DIR}/NonLinUpdater.cc 
	      ${SOURCE_DIR}/QPsiPhi.cc 
	      ${SOURCE_DIR}/BasisFunction.cc 
	      ${SOURCE_DIR}/Boundary.cc 
	      ${SOURCE_DIR}/CoarseningManager.cc 
	      ${SOURCE_DIR}/CoarseningManager1d.cc 
	      ${SOURCE_DIR}/CoarseningManager2d.cc 
	      ${SOURCE_DIR}/CoarseningManager3d.cc 
	      ${SOURCE_DIR}/DOFAdmin.cc 
	      ${SOURCE_DIR}/DOFMatrix.cc 
	      ${SOURCE_DIR}/Element.cc 
	      ${SOURCE_DIR}/ElInfo1d.cc 
	      ${SOURCE_DIR}/ElInfo2d.cc 
	      ${SOURCE_DIR}/ElInfo3d.cc 
	      ${SOURCE_DIR}/FiniteElemSpace.cc 
	      ${SOURCE_DIR}/FixVec.cc 
	      ${SOURCE_DIR}/Global.cc 
	      ${SOURCE_DIR}/Lagrange.cc 
	      ${SOURCE_DIR}/Line.cc 
	      ${SOURCE_DIR}/MacroElement.cc 
	      ${SOURCE_DIR}/MacroWriter.cc 
	      ${SOURCE_DIR}/Parameters.cc 
	      ${SOURCE_DIR}/Parametric.cc 
	      ${SOURCE_DIR}/Quadrature.cc 
	      ${SOURCE_DIR}/RCNeighbourList.cc 
	      ${SOURCE_DIR}/RefinementManager.cc 
	      ${SOURCE_DIR}/RefinementManager1d.cc 
	      ${SOURCE_DIR}/RefinementManager2d.cc 
	      ${SOURCE_DIR}/RefinementManager3d.cc 
	      ${SOURCE_DIR}/Tetrahedron.cc 
	      ${SOURCE_DIR}/Traverse.cc 
	      ${SOURCE_DIR}/TraverseParallel.cc 
	      ${SOURCE_DIR}/Triangle.cc 
	      ${SOURCE_DIR}/TecPlotWriter.cc 
	      ${SOURCE_DIR}/ValueWriter.cc 
	      ${SOURCE_DIR}/VtkWriter.cc 
	      ${SOURCE_DIR}/PngWriter.cc 
	      ${SOURCE_DIR}/PovrayWriter.cc 
	      ${SOURCE_DIR}/DataCollector.cc 
	      ${SOURCE_DIR}/ScalableQuadrature.cc 
	      ${SOURCE_DIR}/SubElInfo.cc 
	      ${SOURCE_DIR}/parallel/InteriorBoundary.cc 
	      ${SOURCE_DIR}/ElementDofIterator.cc 
Naumann, Andreas's avatar
Naumann, Andreas committed
153
	      ${SOURCE_DIR}/Debug.cc
154
155
	      ${SOURCE_DIR}/ArhReader.cc
	      ${SOURCE_DIR}/ArhWriter.cc
156
157
158
              ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockStationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockMethod.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
159
160
161
162
163
164
165
166
167
168
169
170
171
	      )

if(ENABLE_PARMETIS)
	find_package(MPI REQUIRED)
	INCLUDE (CMakeForceCompiler)	
	CMAKE_FORCE_C_COMPILER(mpicc "MPI C compiler")
	CMAKE_FORCE_CXX_COMPILER(mpiCC "MPI C++ compiler")

	include_directories( ${LIB_DIR}/ParMetis-3.1)
	SET(PARALLEL_AMDIS_SRC  ${SOURCE_DIR}/ConditionalEstimator.cc ${SOURCE_DIR}/ConditionalMarker.cc 
				${SOURCE_DIR}/ParallelProblem.cc ${SOURCE_DIR}/ParMetisPartitioner.cc 
				${SOURCE_DIR}/PollutionError.cc)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_AMDIS=1")
172
        INSTALL(FILES ${LIB_DIR}/ParMetis-3.1/parmetis.h
173
174
175
		${LIB_DIR}/ParMetis-3.1/libparmetis.a
		${LIB_DIR}/ParMetis-3.1/libmetis.a
		DESTINATION lib/parmetis
176
	       )
Naumann, Andreas's avatar
Naumann, Andreas committed
177
178
179
180
181
endif(ENABLE_PARMETIS)

if(ENABLE_PARALLEL_DOMAIN)
	include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
	SET(PARALLEL_DOMAIN_AMDIS_SRC
182
		${SOURCE_DIR}/parallel/MeshDistributor.cc 
Naumann, Andreas's avatar
Naumann, Andreas committed
183
		${SOURCE_DIR}/parallel/StdMpi.cc
184
		${SOURCE_DIR}/parallel/ParallelDebug.cc
Naumann, Andreas's avatar
Naumann, Andreas committed
185
		${SOURCE_DIR}/parallel/GlobalMatrixSolver.cc
186
187
		${SOURCE_DIR}/parallel/MpiHelper.cc
		${SOURCE_DIR}/parallel/ElementObjectData.cc)
Naumann, Andreas's avatar
Naumann, Andreas committed
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_DOMAIN_AMDIS=1")
endif(ENABLE_PARALLEL_DOMAIN)

if(ENABLE_DEBUG)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -g -O0 -DDEBUG=1")
endif(ENABLE_DEBUG)

if(ENABLE_OPENMP)
	if(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -openmp")
	else(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -fopenmp")
	endif(ENABLE_INTEL)
endif(ENABLE_OPENMP)

if(ENABLE_UMFPACK)
	include_directories(${LIB_DIR}/UFconfig ${LIB_DIR}/AMD/Include ${LIB_DIR}/UMFPACK/Include)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK")
206
        FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/UMFPACK/Include/*.h")
207
208
	INSTALL(FILES ${UMFPACK_HEADERS} 
		DESTINATION include/amdis/umfpack/)
209

210
	FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/AMD/Include/*.h")
211
212
	INSTALL(FILES ${UMFPACK_HEADERS} 
		DESTINATION include/amdis/amd/)
213

214
	FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/*.h")
215
216
	INSTALL(FILES ${HEADERS} 
		DESTINATION include/amdis/ufconfig/)
217

218
	FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/xerbla/*.h")
219
220
	INSTALL(FILES ${HEADERS} 
		DESTINATION include/amdis/ufconfig/xerbla)
221

222
223
224
225
226
	INSTALL(FILES ${LIB_DIR}/UMFPACK/Lib/libumfpack.a 
		DESTINATION lib/amdis/umfpack/)
	INSTALL(FILES ${LIB_DIR}/AMD/Lib/libamd.a 
		DESTINATION lib/amdis/amd/)
	SET(RPM_DEPEND_STR "blas")
Naumann, Andreas's avatar
Naumann, Andreas committed
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
endif(ENABLE_UMFPACK)

if(ENABLE_MKL)
	include_directories(${MKL_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_MKL=1")
endif(ENABLE_MKL)

if(ENABLE_DUNE)
	include_directories(${DUNE_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_DUNE=1")
endif(ENABLE_DUNE)

SET(COMPOSITE_SOURCE_DIR compositeFEM/src)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc 
		      ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc 
		      ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )

#mtl4 includes
247
include_directories(${MTL_DIR})
Naumann, Andreas's avatar
Naumann, Andreas committed
248
249
250
251
include_directories(${SOURCE_DIR})

add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
252
target_link_libraries(compositeFEM amdis)
Naumann, Andreas's avatar
Naumann, Andreas committed
253

254
255
256
if(WIN32)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -D_SCL_SECURE_NO_WARNINGS -D_CRT_SECURE_NO_WARNINGS")
endif(WIN32)
257
message("compileflags: ${COMPILEFLAGS}")
Naumann, Andreas's avatar
Naumann, Andreas committed
258
259
260
261
262
263
SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
if(ENABLE_MARMOT)
	Message("please set marmotcc manually")
endif(ENABLE_MARMOT)

install(TARGETS amdis compositeFEM 
264
	LIBRARY DESTINATION lib/amdis/ )
265
266

FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.h")
267
268
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)
269
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/*.hh")
270
271
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)
272
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/parallel/*.h")
273
274
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/parallel/)
275
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/time/*.h")
276
277
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/time/)
278
FILE(GLOB HEADERS "${AMDiS_SOURCE_DIR}/itl/*.hpp")
279
280
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/itl)
281
282
283
284
285

configure_file(${AMDiS_BINARY_DIR}/AMDiSConfig.cmake.in
		${AMDiS_BINARY_DIR}/AMDiSConfig.cmake
		@ONLY
	      )
286
287
288
289
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSConfig.cmake 
	DESTINATION share/amdis/)
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDiSUse.cmake 
	DESTINATION share/amdis/)
Naumann, Andreas's avatar
Naumann, Andreas committed
290

291
292
#install mtl
INSTALL(DIRECTORY ${CMAKE_BINARY_DIR}/lib/mtl4/
293
294
295
296
297
298
	DESTINATION include/amdis/mtl4/
	FILES_MATCHING PATTERN "*.hpp"
	PATTERN ".svn" EXCLUDE
	PATTERN ".svn/*" EXCLUDE
	PATTERN "mtl4/libs" EXCLUDE
	PATTERN "mtl4/extern" EXCLUDE
299
       )
300
301
302
303
304
305
306
307

#PACKAGES
set(CPACK_PACKAGE_CONTACT "Andreas.Naumann@tu-dresden.de")
set(CPACK_GENERATOR "RPM" "DEB" "TGZ")
set(CPACK_INSTALL_PREFIX "/usr/")

set(CPACK_RPM_PACKAGE_REQUIRES "boost-devel >= 1.42, ${RPM_DEPEND_STR}")

308
include(CPack)
Naumann, Andreas's avatar
Naumann, Andreas committed
309
310
311
312
313
314
if(ENABLE_TESTS)
#ENABLE_TESTING()
#add_test(demo_test run_test.sh)

#add_test(demo_test ${CMAKE_CTEST_COMMAND} --build-and-test "${CMAKE_SOURCE_DIR}/test/demo_test" "${CMAKE_BINARY_DIR}/test/demo_test" --build-generator "${CMAKE_GENERATOR}" --build-makeprogram "${CMAKE_MAKE_PROGRAM}" "${CMAKE_BINARY_DIR}/test/demo_test")
endif(ENABLE_TESTS)