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Commit 4354cab8 authored by Thomas Witkowski's avatar Thomas Witkowski
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Fixed some more periodic BC problems in 3D. Should work now correctly.

parent dfeb9e9e
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AMDiS/src/parallel/ElementObjectData.cc
View file @ 4354cab8
......@@ -152,6 +152,9 @@ namespace AMDiS {
serialize(out, it->second);
}
SerUtil::serialize(out, periodicVertices);
SerUtil::serialize(out, periodicEdges);
SerUtil::serialize(out, periodicFaces);
}
......@@ -257,6 +260,10 @@ namespace AMDiS {
deserialize(in, data);
faceInRank[face] = data;
}
SerUtil::deserialize(in, periodicVertices);
SerUtil::deserialize(in, periodicEdges);
SerUtil::deserialize(in, periodicFaces);
}
......
AMDiS/src/parallel/ElementObjectData.h
View file @ 4354cab8
......@@ -34,6 +34,15 @@
namespace AMDiS {
using namespace std;
template<typename T>
struct PerBoundMap
{
typedef map<pair<T, T>, BoundaryType> type;
typedef typename type::iterator iterator;
};
struct ElementObjectData {
ElementObjectData(int a = -1, int b = 0, BoundaryType c = INTERIOR)
: elIndex(a),
......@@ -48,7 +57,7 @@ namespace AMDiS {
BoundaryType boundaryType;
void serialize(std::ostream &out) const
void serialize(ostream &out) const
{
SerUtil::serialize(out, elIndex);
SerUtil::serialize(out, ithObject);
......@@ -56,7 +65,7 @@ namespace AMDiS {
}
void deserialize(std::istream &in)
void deserialize(istream &in)
{
SerUtil::deserialize(in, elIndex);
SerUtil::deserialize(in, ithObject);
......@@ -90,7 +99,6 @@ namespace AMDiS {
void addVertex(Element *el, int ith, BoundaryType bound = INTERIOR)
{
// DegreeOfFreedom vertex = el->getObject<DegreeOfFreedom>(ith);
DegreeOfFreedom vertex = el->getDof(ith, 0);
int elIndex = el->getIndex();
ElementObjectData elObj(elIndex, ith, bound);
......@@ -102,7 +110,6 @@ namespace AMDiS {
void addEdge(Element *el, int ith, BoundaryType bound = INTERIOR)
{
// DofEdge edge = el->getObject<DofEdge>(ith);
DofEdge edge = el->getEdge(ith);
int elIndex = el->getIndex();
ElementObjectData elObj(elIndex, ith, bound);
......@@ -114,7 +121,6 @@ namespace AMDiS {
void addFace(Element *el, int ith, BoundaryType bound = INTERIOR)
{
// DofFace face = el->getObject<DofFace>(ith);
DofFace face = el->getFace(ith);
int elIndex = el->getIndex();
ElementObjectData elObj(elIndex, ith, bound);
......@@ -136,8 +142,23 @@ namespace AMDiS {
addFace(el, i);
}
void addPeriodicVertex(pair<DegreeOfFreedom, DegreeOfFreedom> perVertex,
BoundaryType bType)
{
periodicVertices[perVertex] = bType;
}
void addPeriodicEdge(pair<DofEdge, DofEdge> perEdge, BoundaryType bType)
{
periodicEdges[perEdge] = bType;
}
void addPeriodicFace(pair<DofFace, DofFace> perFace, BoundaryType bType)
{
periodicFaces[perFace] = bType;
}
void createRankData(std::map<int, int>& macroElementRankMap);
void createRankData(map<int, int>& macroElementRankMap);
bool iterate(GeoIndex pos)
......@@ -200,7 +221,7 @@ namespace AMDiS {
}
std::map<int, ElementObjectData>& getIterateData()
map<int, ElementObjectData>& getIterateData()
{
switch (iterGeoPos) {
case VERTEX:
......@@ -274,33 +295,33 @@ namespace AMDiS {
}
std::vector<ElementObjectData>& getElements(DegreeOfFreedom vertex)
vector<ElementObjectData>& getElements(DegreeOfFreedom vertex)
{
return vertexElements[vertex];
}
std::vector<ElementObjectData>& getElements(DofEdge edge)
vector<ElementObjectData>& getElements(DofEdge edge)
{
return edgeElements[edge];
}
std::vector<ElementObjectData>& getElements(DofFace face)
vector<ElementObjectData>& getElements(DofFace face)
{
return faceElements[face];
}
std::map<int, ElementObjectData>& getElementsInRank(DegreeOfFreedom vertex)
map<int, ElementObjectData>& getElementsInRank(DegreeOfFreedom vertex)
{
return vertexInRank[vertex];
}
std::map<int, ElementObjectData>& getElementsInRank(DofEdge edge)
map<int, ElementObjectData>& getElementsInRank(DofEdge edge)
{
return edgeInRank[edge];
}
std::map<int, ElementObjectData>& getElementsInRank(DofFace face)
map<int, ElementObjectData>& getElementsInRank(DofFace face)
{
return faceInRank[face];
}
......@@ -320,45 +341,50 @@ namespace AMDiS {
return faceLocalMap[data];
}
void serialize(std::ostream &out);
void serialize(ostream &out);
void deserialize(std::istream &in);
void deserialize(istream &in);
private:
void serialize(std::ostream &out, std::vector<ElementObjectData>& elVec);
void serialize(ostream &out, vector<ElementObjectData>& elVec);
void deserialize(std::istream &in, std::vector<ElementObjectData>& elVec);
void deserialize(istream &in, vector<ElementObjectData>& elVec);
void serialize(std::ostream &out, std::map<int, ElementObjectData>& data);
void serialize(ostream &out, map<int, ElementObjectData>& data);
void deserialize(std::istream &in, std::map<int, ElementObjectData>& data);
void deserialize(istream &in, map<int, ElementObjectData>& data);
private:
std::map<DegreeOfFreedom, std::vector<ElementObjectData> > vertexElements;
std::map<DofEdge, std::vector<ElementObjectData> > edgeElements;
std::map<DofFace, std::vector<ElementObjectData> > faceElements;
map<DegreeOfFreedom, vector<ElementObjectData> > vertexElements;
map<DofEdge, vector<ElementObjectData> > edgeElements;
map<DofFace, vector<ElementObjectData> > faceElements;
std::map<ElementObjectData, DegreeOfFreedom> vertexLocalMap;
std::map<ElementObjectData, DofEdge> edgeLocalMap;
std::map<ElementObjectData, DofFace> faceLocalMap;
map<ElementObjectData, DegreeOfFreedom> vertexLocalMap;
map<ElementObjectData, DofEdge> edgeLocalMap;
map<ElementObjectData, DofFace> faceLocalMap;
std::map<DegreeOfFreedom, int> vertexOwner;
std::map<DofEdge, int> edgeOwner;
std::map<DofFace, int> faceOwner;
map<DegreeOfFreedom, int> vertexOwner;
map<DofEdge, int> edgeOwner;
map<DofFace, int> faceOwner;
std::map<DegreeOfFreedom, std::map<int, ElementObjectData> > vertexInRank;
std::map<DofEdge, std::map<int, ElementObjectData> > edgeInRank;
std::map<DofFace, std::map<int, ElementObjectData> > faceInRank;
map<DegreeOfFreedom, map<int, ElementObjectData> > vertexInRank;
map<DofEdge, map<int, ElementObjectData> > edgeInRank;
map<DofFace, map<int, ElementObjectData> > faceInRank;
std::map<DegreeOfFreedom, std::map<int, ElementObjectData> >::iterator vertexIter;
std::map<DofEdge, std::map<int, ElementObjectData> >::iterator edgeIter;
std::map<DofFace, std::map<int, ElementObjectData> >::iterator faceIter;
map<DegreeOfFreedom, map<int, ElementObjectData> >::iterator vertexIter;
map<DofEdge, map<int, ElementObjectData> >::iterator edgeIter;
map<DofFace, map<int, ElementObjectData> >::iterator faceIter;
GeoIndex iterGeoPos;
public:
// The following three data structures store periodic DOFs, edges and faces.
PerBoundMap<DegreeOfFreedom>::type periodicVertices;
PerBoundMap<DofEdge>::type periodicEdges;
PerBoundMap<DofFace>::type periodicFaces;
};
}
......
AMDiS/src/parallel/MeshDistributor.cc
View file @ 4354cab8
......@@ -1323,13 +1323,11 @@ namespace AMDiS {
DofEdge edge2 = neigh->getEdge(elInfo->getOppVertex(i));
BoundaryType boundaryType = elInfo->getBoundary(EDGE, i);
periodicEdges[std::make_pair(edge1, edge2)] = boundaryType;
elObjects.addPeriodicEdge(std::make_pair(edge1, edge2), boundaryType);
periodicEdgeAssoc[edge1].insert(edge2);
periodicVertices[std::make_pair(edge1.first, edge2.first)] = boundaryType;
periodicVertices[std::make_pair(edge1.second, edge2.second)] = boundaryType;
elObjects.addPeriodicVertex(std::make_pair(edge1.first, edge2.first), boundaryType);
elObjects.addPeriodicVertex(std::make_pair(edge1.second, edge2.second), boundaryType);
periodicDofAssoc[edge1.first].insert(boundaryType);
periodicDofAssoc[edge1.second].insert(boundaryType);
......@@ -1348,11 +1346,11 @@ namespace AMDiS {
DofFace face2 = neigh->getFace(elInfo->getOppVertex(i));
BoundaryType boundaryType = elInfo->getBoundary(FACE, i);
periodicFaces[std::make_pair(face1, face2)] = elInfo->getBoundary(i);
elObjects.addPeriodicFace(std::make_pair(face1, face2), elInfo->getBoundary(i));
periodicVertices[std::make_pair(face1.get<0>(), face2.get<0>())] = boundaryType;
periodicVertices[std::make_pair(face1.get<1>(), face2.get<1>())] = boundaryType;
periodicVertices[std::make_pair(face1.get<2>(), face2.get<2>())] = boundaryType;
elObjects.addPeriodicVertex(std::make_pair(face1.get<0>(), face2.get<0>()), boundaryType);
elObjects.addPeriodicVertex(std::make_pair(face1.get<1>(), face2.get<1>()), boundaryType);
elObjects.addPeriodicVertex(std::make_pair(face1.get<2>(), face2.get<2>()), boundaryType);
periodicDofAssoc[face1.get<0>()].insert(boundaryType);
periodicDofAssoc[face1.get<1>()].insert(boundaryType);
......@@ -1371,9 +1369,10 @@ namespace AMDiS {
DofEdge neighEdge2 = std::make_pair(face2.get<0>(), face2.get<2>());
DofEdge neighEdge3 = std::make_pair(face2.get<1>(), face2.get<2>());
periodicEdges[std::make_pair(elEdge1, neighEdge1)] = boundaryType;
periodicEdges[std::make_pair(elEdge2, neighEdge2)] = boundaryType;
periodicEdges[std::make_pair(elEdge3, neighEdge3)] = boundaryType;
elObjects.addPeriodicEdge(std::make_pair(elEdge1, neighEdge1), boundaryType);
elObjects.addPeriodicEdge(std::make_pair(elEdge2, neighEdge2), boundaryType);
elObjects.addPeriodicEdge(std::make_pair(elEdge3, neighEdge3), boundaryType);
periodicEdgeAssoc[elEdge1].insert(neighEdge1);
periodicEdgeAssoc[elEdge2].insert(neighEdge2);
......@@ -1394,7 +1393,7 @@ namespace AMDiS {
// === Search for interectly connected vertices in periodic boundaries. ===
if (periodicVertices.size() > 0) {
if (elObjects.periodicVertices.size() > 0) {
// === Search for an unsed boundary index. ===
......@@ -1412,42 +1411,100 @@ namespace AMDiS {
// === Get all vertex DOFs that have multiple periodic associations. ===
std::map<int, std::vector<DegreeOfFreedom> > multiplePeriodicDof;
std::vector<DegreeOfFreedom> multPeriodicDof2, multPeriodicDof3;
for (std::map<DegreeOfFreedom, std::set<BoundaryType> >::iterator it = periodicDofAssoc.begin();
it != periodicDofAssoc.end(); ++it) {
TEST_EXIT_DBG((mesh->getDim() == 2 && it->second.size() <= 2) ||
(mesh->getDim() == 3 && it->second.size() <= 3))
("Should not happen!\n");
multiplePeriodicDof[it->second.size()].push_back(it->first);
if (it->second.size() == 2)
multPeriodicDof2.push_back(it->first);
if (it->second.size() == 3)
multPeriodicDof3.push_back(it->first);
}
if (mesh->getDim() == 2) {
TEST_EXIT_DBG(multPeriodicDof2.size() == 0 ||
multPeriodicDof2.size() == 4)
("Should not happen (%d)!\n", multPeriodicDof2.size());
TEST_EXIT_DBG(multPeriodicDof3.size() == 0)("Should not happen!\n");
}
if (mesh->getDim() == 3) {
TEST_EXIT_DBG(multPeriodicDof3.size() == 0 ||
multPeriodicDof3.size() == 8)
("Should not happen (%d)!\n", multPeriodicDof3.size());
}
if (mesh->getDim() == 2)
TEST_EXIT_DBG(multiplePeriodicDof[2].size() == 0 ||
multiplePeriodicDof[2].size() == 4)
("Should not happen (%d)!\n", multiplePeriodicDof[2].size());
if (mesh->getDim() == 3)
TEST_EXIT_DBG(multiplePeriodicDof[3].size() == 0 ||
multiplePeriodicDof[3].size() == 8)
("Should not happen (%d)!\n", multiplePeriodicDof[3].size());
if (multPeriodicDof2.size() > 0) {
for (unsigned int i = 0; i < multPeriodicDof2.size(); i++) {
DegreeOfFreedom dof0 = multPeriodicDof2[i];
if (dof0 == -1)
continue;
DegreeOfFreedom dof1 = -1;
DegreeOfFreedom dof2 = -1;
BoundaryType type0 = *(periodicDofAssoc[dof0].begin());
BoundaryType type1 = *(++(periodicDofAssoc[dof0].begin()));
for (PerBoundMap<DegreeOfFreedom>::iterator it = elObjects.periodicVertices.begin();
it != elObjects.periodicVertices.end(); ++it) {
if (it->first.first == dof0 && it->second == type0)
dof1 = it->first.second;
if (it->first.first == dof0 && it->second == type1)
dof2 = it->first.second;
if (dof1 != -1 && dof2 != -1)
break;
}
TEST_EXIT_DBG(dof1 != -1 && dof2 != -1)("Should not happen!\n");
DegreeOfFreedom dof3 = -1;
for (PerBoundMap<DegreeOfFreedom>::iterator it = elObjects.periodicVertices.begin();
it != elObjects.periodicVertices.end(); ++it) {
if (it->first.first == dof1 && it->second == type1) {
dof3 = it->first.second;
TEST_EXIT_DBG(elObjects.periodicVertices[std::make_pair(dof2, dof3)] == type0)
("Should not happen!\n");
for (int k = 2; k <= 3; k++) {
int nMultiplePeriodicDofs = multiplePeriodicDof[k].size();
for (int i = 0; i < nMultiplePeriodicDofs; i++) {
for (int j = i + 1; j < nMultiplePeriodicDofs; j++) {
break;
}
}
TEST_EXIT_DBG(dof3 != -1)("Should not happen!\n");
TEST_EXIT_DBG(elObjects.periodicVertices.count(std::make_pair(dof0, dof3)) == 0)
("Should not happen!\n");
TEST_EXIT_DBG(elObjects.periodicVertices.count(std::make_pair(dof3, dof0)) == 0)
("Should not happen!\n");
elObjects.periodicVertices[std::make_pair(dof0, dof3)] = newPeriodicBoundaryType;
elObjects.periodicVertices[std::make_pair(dof3, dof0)] = newPeriodicBoundaryType;
for (unsigned int j = i + 1; j < multPeriodicDof2.size(); j++)
if (multPeriodicDof2[j] == dof3)
multPeriodicDof2[j] = -1;
}
}
if (multPeriodicDof3.size() > 0) {
int nMultPeriodicDofs = multPeriodicDof3.size();
for (int i = 0; i < nMultPeriodicDofs; i++) {
for (int j = i + 1; j < nMultPeriodicDofs; j++) {
std::pair<DegreeOfFreedom, DegreeOfFreedom> perDofs0 =
std::make_pair(multiplePeriodicDof[k][i], multiplePeriodicDof[k][j]);
std::make_pair(multPeriodicDof3[i], multPeriodicDof3[j]);
std::pair<DegreeOfFreedom, DegreeOfFreedom> perDofs1 =
std::make_pair(multiplePeriodicDof[k][j], multiplePeriodicDof[k][i]);
std::make_pair(multPeriodicDof3[j], multPeriodicDof3[i]);
if (periodicVertices.count(perDofs0) == 0) {
TEST_EXIT_DBG(periodicVertices.count(perDofs1) == 0)
if (elObjects.periodicVertices.count(perDofs0) == 0) {
TEST_EXIT_DBG(elObjects.periodicVertices.count(perDofs1) == 0)
("Should not happen!\n");
periodicVertices[perDofs0] = newPeriodicBoundaryType;
periodicVertices[perDofs1] = newPeriodicBoundaryType;
elObjects.periodicVertices[perDofs0] = newPeriodicBoundaryType;
elObjects.periodicVertices[perDofs1] = newPeriodicBoundaryType;
newPeriodicBoundaryType--;
mesh->getPeriodicAssociations()[newPeriodicBoundaryType] =
new VertexVector(feSpace->getAdmin(), "");
......@@ -1470,8 +1527,8 @@ namespace AMDiS {
std::pair<DofEdge, DofEdge> perEdge1 =
std::make_pair(perEdge0.second, perEdge0.first);
periodicEdges[perEdge0] = newPeriodicBoundaryType;
periodicEdges[perEdge1] = newPeriodicBoundaryType;
elObjects.periodicEdges[perEdge0] = newPeriodicBoundaryType;
elObjects.periodicEdges[perEdge1] = newPeriodicBoundaryType;
newPeriodicBoundaryType--;
mesh->getPeriodicAssociations()[newPeriodicBoundaryType] =
new VertexVector(feSpace->getAdmin(), "");
......@@ -1484,31 +1541,31 @@ namespace AMDiS {
// === there must be a mapping B -> A with the same boundary type. ===
#if (DEBUG != 0)
for (std::map<std::pair<DegreeOfFreedom, DegreeOfFreedom>, BoundaryType>::iterator it = periodicVertices.begin();
it != periodicVertices.end(); ++it) {
for (PerBoundMap<DegreeOfFreedom>::iterator it = elObjects.periodicVertices.begin();
it != elObjects.periodicVertices.end(); ++it) {
std::pair<DegreeOfFreedom, DegreeOfFreedom> testVertex =
std::make_pair(it->first.second, it->first.first);
TEST_EXIT_DBG(periodicVertices.count(testVertex) == 1)("Should not happen!\n");
TEST_EXIT_DBG(periodicVertices[testVertex] == it->second)("Should not happen!\n");
TEST_EXIT_DBG(elObjects.periodicVertices.count(testVertex) == 1)("Should not happen!\n");
TEST_EXIT_DBG(elObjects.periodicVertices[testVertex] == it->second)("Should not happen!\n");
}
for (std::map<std::pair<DofEdge, DofEdge>, BoundaryType>::iterator it = periodicEdges.begin();
it != periodicEdges.end(); ++it) {
for (PerBoundMap<DofEdge>::iterator it = elObjects.periodicEdges.begin();
it != elObjects.periodicEdges.end(); ++it) {
std::pair<DofEdge, DofEdge> testEdge =
std::make_pair(it->first.second, it->first.first);
TEST_EXIT_DBG(periodicEdges.count(testEdge) == 1)("Should not happen!\n");
TEST_EXIT_DBG(periodicEdges[testEdge] == it->second)("Should not happen!\n");
TEST_EXIT_DBG(elObjects.periodicEdges.count(testEdge) == 1)("Should not happen!\n");
TEST_EXIT_DBG(elObjects.periodicEdges[testEdge] == it->second)("Should not happen!\n");
}
for (std::map<std::pair<DofFace, DofFace>, BoundaryType>::iterator it = periodicFaces.begin();
it != periodicFaces.end(); ++it) {
for (PerBoundMap<DofFace>::iterator it = elObjects.periodicFaces.begin();
it != elObjects.periodicFaces.end(); ++it) {
std::pair<DofFace, DofFace> testFace =
std::make_pair(it->first.second, it->first.first);
TEST_EXIT_DBG(periodicFaces.count(testFace) == 1)("Should not happen!\n");
TEST_EXIT_DBG(periodicFaces[testFace] == it->second)("Should not happen!\n");
TEST_EXIT_DBG(elObjects.periodicFaces.count(testFace) == 1)("Should not happen!\n");
TEST_EXIT_DBG(elObjects.periodicFaces[testFace] == it->second)("Should not happen!\n");
}
#endif
......@@ -1613,8 +1670,8 @@ namespace AMDiS {
// === Create periodic boundary data structure. ===
for (std::map<std::pair<DegreeOfFreedom, DegreeOfFreedom>, BoundaryType>::iterator it = periodicVertices.begin();
it != periodicVertices.end(); ++it) {
for (PerBoundMap<DegreeOfFreedom>::iterator it = elObjects.periodicVertices.begin();
it != elObjects.periodicVertices.end(); ++it) {
if (elObjects.isInRank(it->first.first, mpiRank) == false)
continue;
......@@ -1622,10 +1679,10 @@ namespace AMDiS {
mesh->getDofIndexCoords(it->first.first, feSpace, c0);
mesh->getDofIndexCoords(it->first.second, feSpace, c1);
MSG("CREATE BOUNDARY FOR DOF MAP: %d (%.3f %.3f %.3f)<-> %d (%.3f %.3f %.3f)\n", it->first.first,
c0[0], c0[1], c0[2], it->first.second, c1[0], c1[1], c1[2]);
// MSG("CREATE BOUNDARY FOR DOF MAP: %d (%.3f %.3f %.3f)<-> %d (%.3f %.3f %.3f)\n", it->first.first,
// c0[0], c0[1], c0[2], it->first.second, c1[0], c1[1], c1[2]);
ElementObjectData& perDofEl0 = elObjects.getElementsInRank(it->first.first)[mpiRank];
MSG("DATA: %d %d %d\n", perDofEl0.elIndex, VERTEX, perDofEl0.ithObject);
// MSG("DATA: %d %d %d\n", perDofEl0.elIndex, VERTEX, perDofEl0.ithObject);
for (std::map<int, ElementObjectData>::iterator elIt = elObjects.getElementsInRank(it->first.second).begin();
elIt != elObjects.getElementsInRank(it->first.second).end(); ++elIt) {
......@@ -1654,8 +1711,8 @@ namespace AMDiS {
}
for (std::map<std::pair<DofEdge, DofEdge>, BoundaryType>::iterator it = periodicEdges.begin();
it != periodicEdges.end(); ++it) {
for (PerBoundMap<DofEdge>::iterator it = elObjects.periodicEdges.begin();
it != elObjects.periodicEdges.end(); ++it) {
if (elObjects.isInRank(it->first.first, mpiRank) == false)
continue;
......@@ -1693,8 +1750,8 @@ namespace AMDiS {
}
for (std::map<std::pair<DofFace, DofFace>, BoundaryType>::iterator it = periodicFaces.begin();
it != periodicFaces.end(); ++it) {
for (PerBoundMap<DofFace>::iterator it = elObjects.periodicFaces.begin();
it != elObjects.periodicFaces.end(); ++it) {
if (elObjects.isInRank(it->first.first, mpiRank) == false)
continue;
......@@ -2191,8 +2248,7 @@ namespace AMDiS {
WorldVector<double> c;
mesh->getDofIndexCoords(it->first, feSpace, c);
int nAssoc = it->second.size();
TEST_EXIT_DBG(nAssoc == 1 || nAssoc == 3 ||
(mesh->getDim() == 3 && (nAssoc == 7 || nAssoc == 11)))
TEST_EXIT_DBG(nAssoc == 1 || nAssoc == 3 || (mesh->getDim() == 3 && nAssoc == 7))
("Should not happen! DOF %d (%e %e %e) has %d periodic associations!\n",
it->first, c[0], c[1], (mesh->getDim() == 2 ? 0.0 : c[2]), nAssoc);
}
......@@ -2247,10 +2303,6 @@ namespace AMDiS {
elObjects.serialize(out);
SerUtil::serialize(out, periodicVertices);
SerUtil::serialize(out, periodicEdges);
SerUtil::serialize(out, periodicFaces);
myIntBoundary.serialize(out);
otherIntBoundary.serialize(out);
periodicBoundary.serialize(out);
......@@ -2311,10 +2363,6 @@ namespace AMDiS {
elObjects.deserialize(in);
SerUtil::deserialize(in, periodicVertices);
SerUtil::deserialize(in, periodicEdges);
SerUtil::deserialize(in, periodicFaces);
myIntBoundary.deserialize(in, elIndexMap);
otherIntBoundary.deserialize(in, elIndexMap);
periodicBoundary.deserialize(in, elIndexMap);
......
AMDiS/src/parallel/MeshDistributor.h
View file @ 4354cab8
......@@ -40,6 +40,8 @@
#include "AMDiS_fwd.h"
namespace AMDiS {
using namespace std;
class ParMetisPartitioner;
......@@ -47,36 +49,36 @@ namespace AMDiS {
{
protected:
/// Defines a mapping type from DOFs to rank numbers.
typedef std::map<const DegreeOfFreedom*, int> DofToRank;
typedef map<const DegreeOfFreedom*, int> DofToRank;
/// Defines a mapping type from DOFs to a set of rank numbers.
typedef std::map<const DegreeOfFreedom*, std::set<int> > DofToPartitions;
typedef map<const DegreeOfFreedom*, std::set<int> > DofToPartitions;
/// Defines a mapping type from rank numbers to sets of DOFs.
typedef std::map<int, DofContainer> RankToDofContainer;
typedef map<int, DofContainer> RankToDofContainer;
/// Defines a mapping type from DOF indices to DOF indices.
typedef std::map<DegreeOfFreedom, DegreeOfFreedom> DofMapping;
typedef map<DegreeOfFreedom, DegreeOfFreedom> DofMapping;
/// Defines a mapping type from DOFs to boolean values.
typedef std::map<const DegreeOfFreedom*, bool> DofToBool;
typedef map<const DegreeOfFreedom*, bool> DofToBool;
/// Defines a mapping type from DOF indices to boolean values.
typedef std::map<DegreeOfFreedom, bool> DofIndexToBool;
typedef map<DegreeOfFreedom, bool> DofIndexToBool;
/// Forward type (it maps rank numbers to the interior boundary objects).
typedef InteriorBoundary::RankToBoundMap RankToBoundMap;
typedef std::map<const DegreeOfFreedom*, DegreeOfFreedom> DofIndexMap;
typedef map<const DegreeOfFreedom*, DegreeOfFreedom> DofIndexMap;
/// Mapps a boundar type, i.e., a boundary identifier index, to a periodic
/// dof mapping.
typedef std::map<BoundaryType, DofMapping> PeriodicDofMap;
typedef std::vector<MeshStructure> MeshCodeVec;
typedef map<BoundaryType, DofMapping> PeriodicDofMap;
typedef vector<MeshStructure> MeshCodeVec;
public:
MeshDistributor(std::string str);
MeshDistributor(string str);
virtual ~MeshDistributor() {}
......@@ -106,7 +108,7 @@ namespace AMDiS {
/// Set for each element on the partitioning level the number of leaf elements.
void setInitialElementWeights();
inline virtual std::string getName()
inline virtual string getName()
{
return name;
}
......@@ -208,10 +210,10 @@ namespace AMDiS {
}
// Writes all data of this object to an output stream.
void serialize(std::ostream &out);
void serialize(ostream &out);
// Reads the object data from an input stream.
void deserialize(std::istream &in);
void deserialize(istream &in);
/** \brief
* This function must be used if the values of a DOFVector must be synchronised
......@@ -288,7 +290,7 @@ namespace AMDiS {
* are colored by the partition they are part of. This function can be used for
* debugging.