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Commit 5f1be647 authored by Praetorius, Simon's avatar Praetorius, Simon
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Base Problems added

parent 9a180be2
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extensions/base_problems/BaseProblem_RB.h 0 → 100644
View file @ 5f1be647
/** \file BaseProblem_RB.h */
#ifndef BASE_PROBLEM_RB_H
#define BASE_PROBLEM_RB_H
#include "AMDiS.h"
#include "BaseProblem.h"
#include "time/ExtendedRosenbrockStationary.h"
using namespace AMDiS;
/** BaseProblems for Rosenbrock time-discretization
*/
class BaseProblem_RB : public BaseProblem<ExtendedRosenbrockStationary>
{
public: // typedefs
typedef BaseProblem<ExtendedRosenbrockStationary> super;
// Rosenbrock methods
//_________________________________________________________________________
public:
BaseProblem_RB(std::string name_) : super(name_), minus1(-1.0) {}
void acceptTimestep() { prob->acceptTimestep(); }
void reset() { prob->reset(); }
void setRosenbrockMethod(RosenbrockMethod *method) { prob->setRosenbrockMethod(method); }
void setTau(double *ptr) { prob->setTau(ptr); }
void setTauGamma(double *ptr0, double *ptr1, double *ptr2, double *ptr3) { prob->setTauGamma(ptr0,ptr1,ptr2,ptr3); }
double* getTauGamma() { return prob->getTauGamma(); }
double* getMinusTauGamma() { return prob->getMinusTauGamma(); }
double* getInvTauGamma() { return prob->getInvTauGamma(); }
double* getMinusInvTauGamma() { return prob->getMinusInvTauGamma(); }
protected:
double minus1;
};
#endif // BASE_PROBLEM_RB_H
\ No newline at end of file
extensions/base_problems/CahnHilliardNavierStokes.cc 0 → 100644
View file @ 5f1be647
#include "CahnHilliardNavierStokes.h"
#include "Views.h"
#include "SignedDistFunctors.h"
#include "PhaseFieldConvert.h"
#include "POperators.h"
using namespace AMDiS;
CahnHilliardNavierStokes::CahnHilliardNavierStokes(const std::string &name_) :
super(name_),
useMobility(false),
useConservationForm(false),
doubleWell(0),
gamma(1.0),
eps(0.1),
minusEps(-0.1),
epsInv(10.0),
minusEpsInv(-10.0),
epsSqr(0.01),
minusEpsSqr(-0.01),
laplaceType(0),
nonLinTerm(2),
oldTimestep(0.0),
viscosity(1.0),
density(1.0),
c(0.0),
sigma(1.0),
surfaceTension(1.0),
reinit(NULL),
velocity(NULL),
fileWriter(NULL)
{
// parameters for CH
Parameters::get(name + "->use mobility", useMobility); // mobility
Parameters::get(name + "->gamma", gamma); // mobility
Parameters::get(name + "->epsilon", eps); // interface width
// type of double well: 0= [0,1], 1= [-1,1]
Parameters::get(name + "->double-well type", doubleWell);
// parameters for navier-stokes
Initfile::get(name + "->viscosity", viscosity);
Initfile::get(name + "->density", density);
// type of laplace operator: 0... div(nu*grad(u)), 1... div(0.5*nu*(grad(u)+grad(u)^T))
Initfile::get(name + "->laplace operator", laplaceType);
// type of non-linear term: 0... u^old*grad(u_i^old), 1... u'*grad(u_i^old), 2... u^old*grad(u'_i)
Initfile::get(name + "->non-linear term", nonLinTerm);
// Parameters for CH-Coupling
Initfile::get(name + "->use conservation form", useConservationForm);
// Parameters for NS-Coupling
Initfile::get(name + "->sigma", sigma); // surface tension
surfaceTension = sigma*3.0/(2.0*sqrt(2.0)) / eps;
force.set(0.0);
Initfile::get(name + "->force", force);
// transformation of the parameters
minusEps = -eps;
epsInv = 1.0/eps;
minusEpsInv = -epsInv;
epsSqr = sqr(eps);
minusEpsSqr = -epsSqr;
}
CahnHilliardNavierStokes::~CahnHilliardNavierStokes()
{ FUNCNAME("CahnHilliardNavierStokes::~CahnHilliardNavierStokes()");
if (reinit != NULL) {
delete reinit;
reinit = NULL;
}
if (velocity != NULL) {
delete velocity;
velocity = NULL;
}
delete fileWriter;
fileWriter = NULL;
}
void CahnHilliardNavierStokes::initData()
{ FUNCNAME("CahnHilliardNavierStokes::initData()");
dim = getMesh()->getDim();
// create instance redistancing class
reinit = new HL_SignedDistTraverse("reinit", dim);
if (velocity == NULL)
velocity = new DOFVector<WorldVector<double> >(getFeSpace(2), "velocity");
fileWriter = new FileVectorWriter(name + "->velocity->output", getFeSpace(2)->getMesh(), velocity);
super::initData();
}
void CahnHilliardNavierStokes::fillOperators()
{ FUNCNAME("CahnHilliardNavierStokes::fillOperators()");
MSG("CahnHilliardNavierStokes::fillOperators()\n");
// variable order:
// (c, mu, u0, u1 [, u2], p)
WorldVector<DOFVector<double>* > vel;
for (size_t i = 0; i < dow; i++)
vel[i] = prob->getSolution()->getDOFVector(2+i);
// dt(c) = laplace(mu) - u*grad(c)
// -----------------------------------
/// < phi*c/tau , psi >
Operator *opChMnew = new Operator(prob->getFeSpace(0),prob->getFeSpace(0));
opChMnew->addZeroOrderTerm(new Simple_ZOT);
prob->addMatrixOperator(*opChMnew, 0, 0, getInvTau());
/// < phi*c^old/tau , psi >
Operator *opChMold = new Operator(prob->getFeSpace(0),prob->getFeSpace(0));
opChMold->addZeroOrderTerm(new VecAtQP_ZOT(prob->getSolution()->getDOFVector(0)));
prob->addVectorOperator(*opChMold,0, getInvTau());
/// < phi*grad(mu) , grad(psi) >
// div(M(c)grad(mu)), with M(c)=gamma/4*(c^2-1)^2
Operator *opChLM = new Operator(prob->getFeSpace(0),prob->getFeSpace(1));
if (useMobility) {
if (doubleWell == 0)
opChLM->addSecondOrderTerm(new VecAtQP_SOT(
prob->getSolution()->getDOFVector(0),
new MobilityCH0(gamma)));
else
opChLM->addSecondOrderTerm(new VecAtQP_SOT(
prob->getSolution()->getDOFVector(0),
new MobilityCH1(gamma)));
} else
opChLM->addSecondOrderTerm(new Simple_SOT(gamma));
prob->addMatrixOperator(*opChLM, 0, 1);
/// < u_old * grad(c) - u_old * grad(c_old), psi >
Operator *uGradC = new Operator(prob->getFeSpace(0), prob->getFeSpace(0));
if (useConservationForm)
uGradC->addTerm(new WorldVec_FOT(vel, -1.0), GRD_PSI);
else
uGradC->addTerm(new WorldVec_FOT(vel), GRD_PHI);
uGradC->setUhOld(prob->getSolution()->getDOFVector(0));
prob->addVectorOperator(*uGradC, 0);
prob->addMatrixOperator(*uGradC, 0, 0);
/// < u * grad(c_old) , psi >
for (size_t i = 0; i < dow; i++) {
Operator *uGradC2 = new Operator(prob->getFeSpace(0), prob->getFeSpace(0));
if (useConservationForm)
uGradC2->addTerm(new VecAndPartialDerivative_FOT(prob->getSolution()->getDOFVector(0), i, -1.0), GRD_PSI);
else {
uGradC2->addTerm(new PartialDerivative_ZOT(prob->getSolution()->getDOFVector(0), i));
}
prob->addMatrixOperator(*uGradC2, 0, 2+i);
}
// mu + eps^2*laplace(c) + c - 3*(c_old^2)*c = -2*c_old^3 [+ BC]
// ----------------------------------------------------------------------
/// < -3*phi*c*c_old^2 , psi >
// -3*c_old^2 * c
Operator *opChMPowImpl = new Operator(prob->getFeSpace(1),prob->getFeSpace(0));
opChMPowImpl->addZeroOrderTerm(new VecAtQP_ZOT(
prob->getSolution()->getDOFVector(0),
new Pow2Functor(-3.0)));
if (doubleWell == 0) {
opChMPowImpl->addZeroOrderTerm(new VecAtQP_ZOT(
prob->getSolution()->getDOFVector(0),
new AMDiS::Factor<double>(3.0)));
opChMPowImpl->addZeroOrderTerm(new Simple_ZOT(-0.5));
} else {
opChMPowImpl->addZeroOrderTerm(new Simple_ZOT(1.0));
}
prob->addMatrixOperator(*opChMPowImpl, 1, 0);
/// < -2*phi*c_old^3 , psi >
// -2*c_old^3 + 3/2*c_old^2
Operator *opChMPowExpl = new Operator(prob->getFeSpace(1),prob->getFeSpace(0));
opChMPowExpl->addZeroOrderTerm(new VecAtQP_ZOT(
prob->getSolution()->getDOFVector(0),
new Pow3Functor(-2.0)));
if (doubleWell == 0) {
opChMPowExpl->addZeroOrderTerm(new VecAtQP_ZOT(
prob->getSolution()->getDOFVector(0),
new Pow2Functor(3.0/2.0)));
}
prob->addVectorOperator(*opChMPowExpl, 1);
/// < -eps^2*phi*grad(c) , grad(psi) >
Operator *opChL = new Operator(prob->getFeSpace(1),prob->getFeSpace(0));
opChL->addSecondOrderTerm(new Simple_SOT);
prob->addMatrixOperator(*opChL, 1, 0, &minusEpsSqr);
/// < phi*mu , psi >
Operator *opChM = new Operator(prob->getFeSpace(0),prob->getFeSpace(0));
opChM->addZeroOrderTerm(new Simple_ZOT);
prob->addMatrixOperator(*opChM, 1, 1);
// -----------------------------------------------------------------------------------
for (size_t i = 0; i < dow; ++i) {
/// < (1/tau)*u'_i , psi >
Operator *opTime = new Operator(getFeSpace(2+i), getFeSpace(2+i));
opTime->addTerm(new Simple_ZOT(density));
prob->addMatrixOperator(*opTime, 2+i, 2+i, getInvTau(), getInvTau());
/// < (1/tau)*u_i^old , psi >
Operator *opTimeOld = new Operator(getFeSpace(2+i), getFeSpace(2+i));
opTime->addTerm(new Phase_ZOT(prob->getSolution()->getDOFVector(2+i), density));
prob->addVectorOperator(*opTimeOld, 2+i, getInvTau(), getInvTau());
/// < u^old*grad(u_i^old) , psi >
Operator *opUGradU0 = new Operator(getFeSpace(2+i), getFeSpace(2+i));
opUGradU0->addTerm(new WorldVector_FOT(velocity, -density), GRD_PHI);
opUGradU0->setUhOld(prob->getSolution()->getDOFVector(2+i));
if (nonLinTerm == 0) {
prob->addVectorOperator(*opUGradU0, 2+i);
}
if (nonLinTerm == 1) {
/// < u'*grad(u_i^old) , psi >
for (size_t j = 0; j < dow; ++j) {
Operator *opUGradU1 = new Operator(getFeSpace(2+i),getFeSpace(2+i));
opUGradU1->addTerm(new PartialDerivative_ZOT(
prob->getSolution()->getDOFVector(2+i), j, density));
prob->addMatrixOperator(*opUGradU1, 2+i, 2+j);
}
} else if (nonLinTerm == 2) {
/// < u^old*grad(u'_i) , psi >
for(size_t j = 0; j < dow; ++j) {
Operator *opUGradU2 = new Operator(getFeSpace(2+i),getFeSpace(2+i));
opUGradU2->addTerm(new VecAndPartialDerivative_FOT(
prob->getSolution()->getDOFVector(2+j), j, density), GRD_PHI);
prob->addMatrixOperator(*opUGradU2, 2+i, 2+i);
}
}
// for (size_t j = 0; j < dow; ++j) {
// Operator *opNull = new Operator(getFeSpace(2+i), getFeSpace(2+j));
// opNull->addTerm(new Simple_ZOT(0.0));
// prob->addMatrixOperator(*opNull, 2+i, 2+j);
// }
/// Diffusion-Operator (including Stress-Tensor for space-dependent viscosity)
addLaplaceTerm(i);
/// < p , d_i(psi) >
Operator *opGradP = new Operator(getFeSpace(2+i),getFeSpace(2+dow));
opGradP->addTerm(new PartialDerivative_FOT(i, -1.0), GRD_PSI);
prob->addMatrixOperator(*opGradP, 2+i, 2+dow);
/// external force, i.e. gravitational force
if (norm(force) > DBL_TOL) {
Operator *opForce = new Operator(getFeSpace(2+i), getFeSpace(2+i));
opForce->addTerm(new Simple_ZOT(force[i]));
prob->addVectorOperator(*opForce, 2+i);
}
/// forces by Cahn-Hilliard terms
Operator *opMuGradC = new Operator(getFeSpace(2+i),getFeSpace(0));
opMuGradC->addTerm(new VecAndPartialDerivative_FOT(
prob->getSolution()->getDOFVector(1), i), GRD_PHI);
prob->addMatrixOperator(*opMuGradC, 2+i, 0, &surfaceTension, &surfaceTension);
Operator *opMuGradC2 = new Operator(getFeSpace(2+i),getFeSpace(1));
opMuGradC2->addTerm(new PartialDerivative_ZOT(
prob->getSolution()->getDOFVector(0), i));
prob->addMatrixOperator(*opMuGradC2, 2+i, 1, &surfaceTension, &surfaceTension);
opMuGradC2->setUhOld(prob->getSolution()->getDOFVector(1));
prob->addVectorOperator(*opMuGradC2, 2+i, &surfaceTension, &surfaceTension);
}
/// div(u) = 0
for (size_t i = 0; i < dow; ++i) {
/// < d_i(u'_i) , psi >
Operator *opDivU = new Operator(getFeSpace(2+dow),getFeSpace(2+i));
opDivU->addTerm(new PartialDerivative_FOT(i), GRD_PHI);
prob->addMatrixOperator(*opDivU, 2+dow, 2+i);
}
}
void CahnHilliardNavierStokes::addLaplaceTerm(int i)
{ FUNCNAME("CahnHilliardNavierStokes::addLaplaceTerm()");
/// < alpha*[grad(u)+grad(u)^t] , grad(psi) >
if (laplaceType == 1) {
for (size_t j = 0; j < dow; ++j) {
Operator *opLaplaceUi1 = new Operator(getFeSpace(2+i), getFeSpace(2+j));
opLaplaceUi1->addTerm(new MatrixIJ_SOT(1-i, 1-j, viscosity));
prob->addMatrixOperator(*opLaplaceUi1, 2+i, 2+j);
}
}
/// < alpha*grad(u'_i) , grad(psi) >
Operator *opLaplaceUi = new Operator(getFeSpace(2+i), getFeSpace(2+i));
opLaplaceUi->addTerm(new Simple_SOT(viscosity));
prob->addMatrixOperator(*opLaplaceUi, 2+i, 2+i);
}
extensions/base_problems/CahnHilliardNavierStokes.h 0 → 100644
View file @ 5f1be647
/** \file CahnHilliardNavierStokes.h */
#ifndef CAHN_HILLIARD_H
#define CAHN_HILLIARD_H
#include "AMDiS.h"
#include "BaseProblem.h"
#include "ExtendedProblemStat.h"
#include "HL_SignedDistTraverse.h"
using namespace AMDiS;
class CahnHilliardNavierStokes : public BaseProblem<ExtendedProblemStat>
{
public: // definition of types
typedef BaseProblem<ExtendedProblemStat> super;
public: // public methods
CahnHilliardNavierStokes(const std::string &name_);
~CahnHilliardNavierStokes();
virtual void initData();
double getEpsilon() { return eps; }
int getDoubleWellType() { return doubleWell; }
DOFVector<WorldVector<double> >* getVelocity()
{
return velocity;
}
protected: // protected methods
virtual void fillOperators();
virtual void fillBoundaryConditions() {}
virtual void addLaplaceTerm(int i);
protected: // protected variables
HL_SignedDistTraverse *reinit;
DOFVector<WorldVector<double> >* velocity;
void calcVelocity()
{
if (dow == 1)
transformDOF(prob->getSolution()->getDOFVector(2), velocity, new AMDiS::Vec1WorldVec<double>);
else if (dow == 2)
transformDOF(prob->getSolution()->getDOFVector(2), prob->getSolution()->getDOFVector(3), velocity, new AMDiS::Vec2WorldVec<double>);
else if (dow == 3)
transformDOF(prob->getSolution()->getDOFVector(2), prob->getSolution()->getDOFVector(3), prob->getSolution()->getDOFVector(4), velocity, new AMDiS::Vec3WorldVec<double>);
}
bool useMobility;
bool useConservationForm;
unsigned dim;
int laplaceType;
int nonLinTerm;
int doubleWell;
// navierStokes parameters
double oldTimestep;
double viscosity;
double density;
double c;
// Cahn-Hilliard parameters
double gamma;
double eps;
double minusEps;
double epsInv;
double minusEpsInv;
double epsSqr;
double minusEpsSqr;
double sigma; // coupling parameter to calculate the surface tension
double surfaceTension;// := sigma/epsilon
WorldVector<double> force;
FileVectorWriter *fileWriter;
};
/** \brief
* Abstract function for Cahn-Hilliard mobility
*/
class MobilityCH0 : public AbstractFunction<double,double>
{
public:
MobilityCH0(double gamma_=1.0) :
AbstractFunction<double,double>(4),
gamma(gamma_),
delta(1.e-6) { }
double operator()(const double &ch) const
{
double phase = std::max(0.0, std::min(1.0, ch));
double mobility = 0.25*sqr(phase)*sqr(phase-1.0);
return gamma * std::max(mobility, delta);
}
protected:
double gamma;
double delta;
};
class MobilityCH1 : public AbstractFunction<double,double>
{
public:
MobilityCH1(double gamma_=1.0) :
AbstractFunction<double,double>(4),
gamma(gamma_),
delta(1.e-6) { }
double operator()(const double &ch) const
{
double phase = std::max(-1.0, std::min(1.0, ch));
double mobility = 0.25*sqr(sqr(phase)-1.0);
return gamma * std::max(mobility, delta);
}
protected:
double gamma;
double delta;
};
class ScaleFunctor : public AbstractFunction<double,double>
{
public:
ScaleFunctor(double factor_=1.0) :
AbstractFunction<double,double>(1),
factor(factor_) { }
double operator()(const double &ch) const
{
return factor * ch;
}
protected:
double factor;
};
class Pow2Functor : public AbstractFunction<double,double>
{
public:
Pow2Functor(double factor_=1.0) :
AbstractFunction<double,double>(2),
factor(factor_) { }
double operator()(const double &ch) const
{
return factor * sqr(ch);
}
protected:
double factor;
};
class Pow3Functor : public AbstractFunction<double,double>
{
public:
Pow3Functor(double factor_=1.0) :
AbstractFunction<double,double>(3),
factor(factor_) { }
double operator()(const double &ch) const
{
return factor * sqr(ch) * ch;
}
protected:
double factor;
};
#endif // CAHN_HILLIARD_H
extensions/base_problems/CahnHilliard_RB.cc 0 → 100644
View file @ 5f1be647
#include "CahnHilliard_RB.h"
#include "Views.h"
#include "SignedDistFunctors.h"
#include "PhaseFieldConvert.h"
#include "Tools.h"
using namespace AMDiS;
CahnHilliard_RB::CahnHilliard_RB(const std::string &name_) :
super(name_),
useMobility(false),
doubleWell(0),
gamma(1.0),
eps(0.1),
minusEps(-0.1),
epsInv(10.0),
minusEpsInv(-10.0),
epsSqr(0.01),
minusEpsSqr(-0.01),
reinit(NULL)
{
// parameters for CH
Parameters::get(name + "->use mobility", useMobility); // mobility
Parameters::get(name + "->gamma", gamma); // mobility
Parameters::get(name + "->epsilon", eps); // interface width
// type of double well: 0= [0,1], 1= [-1,1]
Parameters::get(name + "->double-well type", doubleWell);
// transformation of the parameters
minusEps = -eps;
epsInv = 1.0/eps;
minusEpsInv = -epsInv;
epsSqr = sqr(eps);
minusEpsSqr = -epsSqr;
}
CahnHilliard_RB::~CahnHilliard_RB()
{ FUNCNAME("CahnHilliard_RB::~CahnHilliard_RB()");
if (reinit)
delete reinit;
}
void CahnHilliard_RB::initData()
{ FUNCNAME("CahnHilliard_RB::initData()");
// create instance redistancing class
reinit = new HL_SignedDistTraverse("reinit", getMesh()->getDim());
super::initData();
}
void CahnHilliard_RB::solveInitialProblem(AdaptInfo *adaptInfo)
{ FUNCNAME("CahnHilliard_RB::solveInitialProblem()");
Flag initFlag = initDataFromFile(adaptInfo);
if (!initFlag.isSet(DATA_ADOPTED)) {
int initialInterface = 0;
Initfile::get(name + "->initial interface", initialInterface);
double initialEps = eps;
Initfile::get(name + "->initial epsilon", initialEps);