Solved problem when more than one serialization file is read in parallel computations.

AMDiS/Makefile.in

@@ -140,7 +140,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PETSC_DIR = @PETSC_DIR@
 RANLIB = @RANLIB@
-SED = @SED@
 SET_MAKE = @SET_MAKE@
 SHELL = @SHELL@
 STRIP = @STRIP@

AMDiS/aclocal.m4

@@ -1578,27 +1578,10 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '[#]line __oline__ "configure"' > conftest.$ac_ext
-    if AC_TRY_EVAL(ac_compile); then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -4305,9 +4288,6 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1)
 # Is the compiler the GNU C compiler?
 with_gcc=$_LT_AC_TAGVAR(GCC, $1)
 
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -4441,11 +4421,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1)
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1)
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -4457,7 +4437,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1)
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1)
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -4537,7 +4517,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1)
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -6373,7 +6353,6 @@ do
     done
   done
 done
-IFS=$as_save_IFS
 lt_ac_max=0
 lt_ac_count=0
 # Add /usr/xpg4/bin/sed as it is typically found on Solaris
@@ -6406,7 +6385,6 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do
 done
 ])
 SED=$lt_cv_path_SED
-AC_SUBST([SED])
 AC_MSG_RESULT([$SED])
 ])
 

AMDiS/bin/Makefile.in

@@ -423,7 +423,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PETSC_DIR = @PETSC_DIR@
 RANLIB = @RANLIB@
-SED = @SED@
 SET_MAKE = @SET_MAKE@
 SHELL = @SHELL@
 STRIP = @STRIP@

AMDiS/libtool

@@ -30,10 +30,10 @@
 # the same distribution terms that you use for the rest of that program.
 
 # A sed program that does not truncate output.
-SED="/bin/sed"
+SED="/usr/bin/sed"
 
 # Sed that helps us avoid accidentally triggering echo(1) options like -n.
-Xsed="/bin/sed -e 1s/^X//"
+Xsed="/usr/bin/sed -e 1s/^X//"
 
 # The HP-UX ksh and POSIX shell print the target directory to stdout
 # if CDPATH is set.
@@ -44,7 +44,7 @@ available_tags=" CXX F77"
 
 # ### BEGIN LIBTOOL CONFIG
 
-# Libtool was configured on host NWRW15:
+# Libtool was configured on host deimos101:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -66,12 +66,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=i686-pc-linux-gnu
+host=x86_64-unknown-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=i686-pc-linux-gnu
+build=x86_64-unknown-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -82,25 +82,22 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="gcc"
+LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="gcc"
+CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
 
-gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
-gcc_ver=`gcc -dumpversion`
-
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/bin/ld"
+LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -174,7 +171,7 @@ dlopen_self=unknown
 dlopen_self_static=unknown
 
 # Compiler flag to prevent dynamic linking.
-link_static_flag="-static"
+link_static_flag=""
 
 # Compiler flag to turn off builtin functions.
 no_builtin_flag=" -fno-builtin"
@@ -232,11 +229,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+predep_objects=""
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+postdep_objects=""
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -248,7 +245,7 @@ postdeps=""
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+compiler_lib_search_path=""
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -328,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
@@ -6763,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
 # End:
 # ### BEGIN LIBTOOL TAG CONFIG: CXX
 
-# Libtool was configured on host NWRW15:
+# Libtool was configured on host deimos101:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -6785,12 +6782,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=i686-pc-linux-gnu
+host=x86_64-unknown-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=i686-pc-linux-gnu
+build=x86_64-unknown-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -6801,25 +6798,22 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="gcc"
+LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="g++"
+CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicxx"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
 
-gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
-gcc_ver=`gcc -dumpversion`
-
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/bin/ld"
+LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -6893,7 +6887,7 @@ dlopen_self=unknown
 dlopen_self_static=unknown
 
 # Compiler flag to prevent dynamic linking.
-link_static_flag="-static"
+link_static_flag=""
 
 # Compiler flag to turn off builtin functions.
 no_builtin_flag=" -fno-builtin"
@@ -6948,11 +6942,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -6960,11 +6954,11 @@ predeps=""
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
+postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=`echo "-L/u/witkowski/local/lib -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -7044,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
@@ -7071,7 +7065,7 @@ include_expsyms=""
 
 # ### BEGIN LIBTOOL TAG CONFIG: F77
 
-# Libtool was configured on host NWRW15:
+# Libtool was configured on host deimos101:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -7093,12 +7087,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=i686-pc-linux-gnu
+host=x86_64-unknown-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=i686-pc-linux-gnu
+build=x86_64-unknown-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -7109,7 +7103,7 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="gcc"
+LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
@@ -7118,16 +7112,13 @@ LTCFLAGS="-g -O2"
 CC="g77"
 
 # Is the compiler the GNU C compiler?
-with_gcc=yes
-
-gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
-gcc_ver=`gcc -dumpversion`
+with_gcc=
 
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/bin/ld"
+LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -7259,11 +7250,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+predep_objects=""
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+postdep_objects=""
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -7275,7 +7266,7 @@ postdeps=""
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+compiler_lib_search_path=""
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -7355,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/3.4.6/ /u/witkowski/local/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/3.3.5/ /fastfs/wir/local/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""

AMDiS/src/Element.cc

@@ -479,6 +479,8 @@ namespace AMDiS {
     int nodes;
     SerUtil::deserialize(in, nodes);
 
+    TEST_EXIT_DBG(nodes > 0)("Should not happen!\n");
+
     dof = new DegreeOfFreedom*[nodes]; 
 
     for (int i = 0; i < nodes; i++) {

AMDiS/src/Mesh.cc

@@ -927,11 +927,13 @@ namespace AMDiS {
     diam = w; 
   }
 
+
   void Mesh::setDiameter(int i, double w) 
   { 
     diam[i] = w; 
   }
 
+
   void Mesh::serialize(std::ostream &out)
   {
     serializedDOFs.clear();
@@ -1003,6 +1005,7 @@ namespace AMDiS {
     serializedDOFs.clear();
   }
 
+