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Commit 986197b6 authored by Thomas Witkowski's avatar Thomas Witkowski
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* Copy operator for meshes implemented

parent 68275e39
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AMDiS/src/DOFAdmin.cc
View file @ 986197b6
......@@ -23,7 +23,7 @@ namespace AMDiS {
init();
}
DOFAdmin::DOFAdmin(Mesh* m,std::string aName)
DOFAdmin::DOFAdmin(Mesh* m, std::string aName)
: name(aName),
mesh(m),
nrDOF(mesh->getDim(), NO_INIT),
......@@ -34,7 +34,11 @@ namespace AMDiS {
void DOFAdmin::init()
{
firstHole = size = usedCount = holeCount = sizeUsed = 0;
firstHole = 0;
size = 0;
usedCount = 0;
holeCount = 0;
sizeUsed = 0;
dofFree.clear();
}
......@@ -75,6 +79,9 @@ namespace AMDiS {
DOFAdmin::DOFAdmin(const DOFAdmin&)
{
FUNCNAME("DOFAdmin::DOFAdmin()");
ERROR_EXIT("TODO\n");
}
void DOFAdmin::freeDOFIndex(int dof) {
......
AMDiS/src/DOFAdmin.h
View file @ 986197b6
......@@ -152,14 +152,14 @@ namespace AMDiS {
*/
std::list<DOFIndexedBase*>::iterator beginDOFIndexed() {
return dofIndexedList.begin();
};
}
/** \brief
* Returns an iterator to the end of \ref dofIndexedList
*/
std::list<DOFIndexedBase*>::iterator endDOFIndexed() {
return dofIndexedList.end();
};
}
// ===== getting methods ======================================================
......@@ -172,38 +172,39 @@ namespace AMDiS {
*/
inline const int getUsedSize() const {
return sizeUsed;
};
}
/** \brief
* Returns \ref size
*/
inline const int getSize() const {
return size;
};
}
/** \brief
* Returns \ref usedCount
*/
inline const int getUsedDOFs() const {
return usedCount;
};
}
/** \brief
* Returns \ref holeCount
*/
inline const int getHoleCount() const {
return holeCount;
};
}
/** \brief
* Returns \ref name
*/
inline const std::string& getName() const {
return name;
};
}
/** \brief
* Returns \ref nrDOF[i]
* Returns \ref nrDOF[i], i.e., the number of dofs for the
* position i.
*/
inline const int getNumberOfDOFs(int i) const {
return nrDOF[i];
......@@ -214,7 +215,7 @@ namespace AMDiS {
*/
inline const DimVec<int>& getNumberOfDOFs() const {
return nrDOF;
};
}
/** \brief
* Returns \ref nr0DOF[i]
......@@ -228,28 +229,28 @@ namespace AMDiS {
*/
inline const DimVec<int>& getNumberOfPreDOFs() const {
return nr0DOF;
};
}
/** \brief
* Returns \ref mesh
*/
inline const Mesh* getMesh() const {
return mesh;
};
}
/** \brief
* Returns \ref dofFree, the array denoting DOFs to be either free or used.
*/
inline const std::vector<bool>& getDOFFree() const {
return dofFree;
};
}
/** \brief
* Returns if the given DOF is free.
*/
inline const bool isDOFFree(int i) const {
return dofFree[i];
};
}
/** \} */
......@@ -262,7 +263,7 @@ namespace AMDiS {
/** \brief
* Sets \ref nrDOF[i] = v
*/
void setNumberOfDOFs(int i,int v);
void setNumberOfDOFs(int i, int v);
/** \brief
* Sets \ref nr0DOF[i] = v
......@@ -274,14 +275,14 @@ namespace AMDiS {
*/
inline void setName(const std::string& n) {
name = n;
};
}
/** \brief
* Sets \ref mesh = m
*/
inline void setMesh(Mesh* m) {
mesh = m;
};
}
/** \} */
......@@ -350,7 +351,8 @@ namespace AMDiS {
int sizeUsed;
/** \brief
* dofs from THIS DOFAdmin
* Number of dofs for each position, i.e., vertex,
* edge, ..., center, for this DOFAdmin.
*/
DimVec<int> nrDOF;
......
AMDiS/src/Element.cc
View file @ 986197b6
......@@ -64,6 +64,72 @@ namespace AMDiS {
}
}
Element* Element::cloneWithDOFs()
{
Element *el;
if (isLine()) {
el = NEW Line(mesh);
} else if (isTriangle()) {
el = NEW Triangle(mesh);
} else {
el = NEW Tetrahedron(mesh);
}
el->index = index;
el->mark = mark;
if (newCoord) {
WorldVector<double> *nc = NEW WorldVector<double>();
*nc = *newCoord;
el->newCoord = nc;
}
/* =========== And here we clone the DOFs =========== */
el->dof = GET_MEMORY(DegreeOfFreedom*, mesh->getNumberOfNodes());
int dim = mesh->getDim();
int j = 0;
for (int pos = 0; pos <= dim; pos++) {
GeoIndex position = INDEX_OF_DIM(pos, dim);
int ndof = 0;
for (int i = 0; i < mesh->getNumberOfDOFAdmin(); i++) {
ndof += mesh->getDOFAdmin(i).getNumberOfDOFs(position);
}
if (ndof > 0) {
for (int i = 0; i < mesh->getGeo(position); i++) {
if (dof[j] != NULL) {
if (Mesh::serializedDOFs[dof[j][0]] == NULL) {
el->dof[j] = GET_MEMORY(DegreeOfFreedom, ndof);
for (int k = 0; k < ndof; k++) {
el->dof[j][k] = dof[j][k];
}
Mesh::serializedDOFs[dof[j][0]] = el->dof[j];
} else {
el->dof[j] = Mesh::serializedDOFs[dof[j][0]];
}
} else {
el->dof[j] = NULL;
}
j++;
}
}
}
/* =========== And clone the children ============= */
if (child[0]) {
el->child[0] = child[0]->clone();
}
if (child[1]) {
el->child[1] = child[1]->clone();
}
return el;
}
/****************************************************************************/
/* ATTENTION: */
/* new_dof_fct() destroys new_dof !!!!!!!!!! */
......@@ -92,9 +158,8 @@ namespace AMDiS {
void Element::newDOFFct1(const DOFAdmin* admin)
{
int i, j, k, n0, nd, nd0;
DegreeOfFreedom *ldof;
int j, k, n0, nd, nd0;
DegreeOfFreedom *ldof;
int vertices = mesh->getGeo(VERTEX);
int edges = mesh->getGeo(EDGE);
int faces = mesh->getGeo(FACE);
......@@ -102,7 +167,7 @@ namespace AMDiS {
if ((nd = admin->getNumberOfDOFs(VERTEX))) {
nd0 = admin->getNumberOfPreDOFs(VERTEX);
n0 = admin->getMesh()->getNode(VERTEX);
for (i = 0; i < vertices; i++) {
for (int i = 0; i < vertices; i++) {
CHANGE_DOFS_1(this);
}
}
......@@ -111,7 +176,7 @@ namespace AMDiS {
if ((nd = admin->getNumberOfDOFs(EDGE))) {
nd0 = admin->getNumberOfPreDOFs(EDGE);
n0 = admin->getMesh()->getNode(EDGE);
for (i = 0; i < edges; i++) {
for (int i = 0; i < edges; i++) {
CHANGE_DOFS_1(this);
}
}
......@@ -121,7 +186,7 @@ namespace AMDiS {
if ((nd = admin->getNumberOfDOFs(FACE))) {
nd0 = admin->getNumberOfPreDOFs(FACE);
n0 = admin->getMesh()->getNode(FACE);
for (i = 0; i < faces; i++) {
for (int i = 0; i < faces; i++) {
CHANGE_DOFS_1(this);
}
}
......@@ -130,7 +195,7 @@ namespace AMDiS {
if ((nd = admin->getNumberOfDOFs(CENTER))) {
nd0 = admin->getNumberOfPreDOFs(CENTER);
n0 = admin->getMesh()->getNode(CENTER);
i = 0; /* only one center */
int i = 0; /* only one center */
CHANGE_DOFS_1(this);
}
}
......@@ -138,9 +203,8 @@ namespace AMDiS {
void Element::newDOFFct2(const DOFAdmin* admin)
{
int i, j, k, n0, nd, nd0;
DegreeOfFreedom *ldof;
int i, j, k, n0, nd, nd0;
DegreeOfFreedom *ldof;
int vertices = mesh->getGeo(VERTEX);
int edges = mesh->getGeo(EDGE);
int faces = mesh->getGeo(FACE);
......@@ -191,13 +255,13 @@ namespace AMDiS {
int Element::oppVertex(FixVec<DegreeOfFreedom*, DIMEN> pdof) const
{
int nv = 0, ov = 0;
int nv = 0;
int ov = 0;
int vertices = mesh->getGeo(VERTEX);
int dim = mesh->getDim();
for (int i = 0; i < vertices; i++) {
if (nv < i-1)
if (nv < i - 1)
return(-1);
for (int j = 0; j < dim; j++) {
......@@ -225,10 +289,10 @@ namespace AMDiS {
return ov;
break;
case 2:
return 3-ov;
return 3 - ov;
break;
case 3:
return 6-ov;
return 6 - ov;
break;
default:
ERROR_EXIT("invalid dim\n");
......@@ -237,19 +301,19 @@ namespace AMDiS {
}
double Element::getNewCoord(int j) const {
if (j >=0 ) {
if (j >= 0) {
TEST_EXIT_DBG(newCoord)("newCoord = NULL\n");
return (*newCoord)[j];
} else {
return (newCoord!=NULL);
return (newCoord != NULL);
}
}
void Element::eraseNewCoord() {
if (newCoord!=NULL) {
if (newCoord != NULL) {
DELETE newCoord;
newCoord=NULL;
};
newCoord = NULL;
}
}
void Element::serialize(std::ostream &out)
......@@ -270,13 +334,11 @@ namespace AMDiS {
out.write(reinterpret_cast<const char*>(&nodes), sizeof(int));
for (int pos = 0; pos <= dim; pos++) {
GeoIndex position = INDEX_OF_DIM(pos ,dim);
GeoIndex position = INDEX_OF_DIM(pos, dim);
int ndof = 0;
for (int i = 0; i < mesh->getNumberOfDOFAdmin(); i++) {
const DOFAdmin *localAdmin = &mesh->getDOFAdmin(i);
TEST_EXIT_DBG(localAdmin)("no admin[%d]\n", i);
ndof += localAdmin->getNumberOfDOFs(position);
ndof += mesh->getDOFAdmin(i).getNumberOfDOFs(position);
}
if (ndof > 0) {
......@@ -285,8 +347,7 @@ namespace AMDiS {
if (Mesh::serializedDOFs[dof[j][0]] == NULL) {
Mesh::serializedDOFs[dof[j][0]] = dof[j];
out.write(reinterpret_cast<const char*>(&ndof), sizeof(int));
out.write(reinterpret_cast<const char*>(dof[j]),
ndof * sizeof(DegreeOfFreedom));
out.write(reinterpret_cast<const char*>(dof[j]), ndof * sizeof(DegreeOfFreedom));
} else {
int minusOne = -1;
out.write(reinterpret_cast<const char*>(&minusOne), sizeof(int));
......@@ -334,17 +395,17 @@ namespace AMDiS {
if (typeName != "NULL") {
if (typeName == "Line") {
child[0] = new Line(NULL);
child[1] = new Line(NULL);
};
child[0] = NEW Line(NULL);
child[1] = NEW Line(NULL);
}
if (typeName == "Triangle") {
child[0] = new Triangle(NULL);
child[1] = new Triangle(NULL);
};
child[0] = NEW Triangle(NULL);
child[1] = NEW Triangle(NULL);
}
if (typeName == "Tetrahedron") {
child[0] = new Tetrahedron(NULL);
child[1] = new Tetrahedron(NULL);
};
child[0] = NEW Tetrahedron(NULL);
child[1] = NEW Tetrahedron(NULL);
}
child[0]->deserialize(in);
child[1]->deserialize(in);
} else {
......@@ -357,22 +418,21 @@ namespace AMDiS {
dof = GET_MEMORY(DegreeOfFreedom*, nodes);
int i;
for(i = 0; i < nodes; i++) {
for (int i = 0; i < nodes; i++) {
int dofs;
in.read(reinterpret_cast<char*>(&dofs), sizeof(int));
if(dofs) {
if(dofs != -1) {
if (dofs) {
if (dofs != -1) {
dof[i] = GET_MEMORY(DegreeOfFreedom, dofs);
in.read(reinterpret_cast<char*>(dof[i]), dofs * sizeof(DegreeOfFreedom));
if(Mesh::serializedDOFs[dof[i][0]] != NULL) {
//WARNING("christina -> dofs already deserialized\n");
if (Mesh::serializedDOFs[dof[i][0]] != NULL) {
DegreeOfFreedom *dofPtr = Mesh::serializedDOFs[dof[i][0]];
FREE_MEMORY(dof[i], DegreeOfFreedom, dofs);
dof[i] = dofPtr;
} else {
Mesh::serializedDOFs[dof[i][0]] = dof[i];
}
Mesh::serializedDOFs[dof[i][0]] = dof[i];
} else {
DegreeOfFreedom index;
in.read(reinterpret_cast<char*>(&index), sizeof(DegreeOfFreedom));
......@@ -393,8 +453,8 @@ namespace AMDiS {
in >> typeName;
in.get();
if(typeName != "NULL") {
if(typeName == "WorldVector") {
if (typeName != "NULL") {
if (typeName == "WorldVector") {
newCoord = NEW WorldVector<double>;
newCoord->deserialize(in);
} else {
......@@ -408,9 +468,9 @@ namespace AMDiS {
in >> typeName;
in.get();
if(typeName != "NULL") {
if (typeName != "NULL") {
elementData = CreatorMap<ElementData>::getCreator(typeName)->create();
if(elementData) {
if (elementData) {
elementData->deserialize(in);
} else {
ERROR_EXIT("unexpected type name\n");
......
AMDiS/src/Element.h
View file @ 986197b6
......@@ -101,6 +101,12 @@ namespace AMDiS {
*/
virtual ~Element();
/** \brief
* Clone this Element and return a reference to it. Because also the DOFs
* are cloned, \ref Mesh::serializedDOfs must be used.
*/
Element* cloneWithDOFs();
// ===== getting methods ======================================================
/** \name getting methods
......@@ -213,8 +219,8 @@ namespace AMDiS {
* positionIndex-th part of type position (vertex, edge, face)
*/
virtual int getVertexOfPosition(GeoIndex position,
int positionIndex,
int vertexIndex) const = 0;
int positionIndex,
int vertexIndex) const = 0;
/** \brief
*
......@@ -431,7 +437,7 @@ namespace AMDiS {
/** \brief
* assignment operator
*/
Element& operator=(const Element& old);
Element& operator=(const Element& el);
/** \brief
* Checks whether the face with vertices dof[0],..,dof[DIM-1] is
......@@ -571,10 +577,9 @@ namespace AMDiS {
* Vector of pointers to DOFs. These pointers must be available for elements
* vertices (for the geometric description of the mesh). There my be pointers
* for the edges, for faces and for the center of an element. They are
* ordered
* the following way: The first N_VERTICES entries correspond to the DOFs at
* the vertices of the element. The next ones are those at the edges, if
* present, then those at the faces, if present, and then those at the
* ordered the following way: The first N_VERTICES entries correspond to the
* DOFs at the vertices of the element. The next ones are those at the edges,
* if present, then those at the faces, if present, and then those at the
* barycenter, if present.
*/
DegreeOfFreedom **dof;
......@@ -597,9 +602,8 @@ namespace AMDiS {
* If the element has a boundary edge on a curved boundary, this is a pointer
* to the coordinates of the new vertex that is created due to the refinement
* of the element, otherwise it is a NULL pointer. Thus coordinate
* information
* can be also produced by the traversal routines in the case of curved
* boundary.
* information can be also produced by the traversal routines in the case of
* curved boundary.
*/
WorldVector<double> *newCoord;
......
AMDiS/src/ElementData.h
View file @ 986197b6
......@@ -51,12 +51,12 @@ namespace AMDiS {
*/
ElementData(ElementData *decorated = NULL)
: decorated_(decorated)
{};
{}
/** \brief
* destructor
*/
virtual ~ElementData() {};
virtual ~ElementData() {}
/** \brief
* Refinement of parent to child1 and child2.
......@@ -66,18 +66,18 @@ namespace AMDiS {
Element* child2,
int elType)
{
if(decorated_) {
if (decorated_) {
bool remove =
decorated_->refineElementData(parent, child1, child2, elType);
if(remove) {
if (remove) {
ElementData *tmp = decorated_->decorated_;
delete decorated_;
decorated_ = tmp;
}
}
return false;
};
}
/** \brief
*
......@@ -95,7 +95,7 @@ namespace AMDiS {
delete decorated_;
decorated_ = NULL;
}
};
}
/** \brief
* Returns a copy of this ElementData object including all decorated data.
......@@ -105,7 +105,7 @@ namespace AMDiS {
return decorated_->clone();
}
return NULL;
};
}
/** \brief
* Returns the name of element data type.
......@@ -140,14 +140,14 @@ namespace AMDiS {
}
}
return NULL;
};
}
inline ElementData *getDecorated(int typeID) {
if (decorated_) {
return decorated_->getElementData(typeID);
}
return NULL;
};
}
inline bool deleteDecorated(int typeID) {
if(decorated_) {
......@@ -161,9 +161,15 @@ namespace AMDiS {
}
}
return false;
};
}
inline ElementData *getDecorated() {
return decorated_;
}
inline ElementData *getDecorated() { return decorated_; };
inline void setDecorated(ElementData *d) {
decorated_ = d;
}
protected:
/** \brief
......
AMDiS/src/FiniteElemSpace.cc
View file @ 986197b6
......@@ -45,10 +45,10 @@ namespace AMDiS {
feSpaces.push_back(this);
}
FiniteElemSpace *FiniteElemSpace::provideFESpace(DOFAdmin *admin,
FiniteElemSpace *FiniteElemSpace::provideFESpace(DOFAdmin *admin,
const BasisFunction *basFcts,
Mesh *mesh,
const std::string& name_)
Mesh *mesh,
const std::string& name_)
{
int numSpaces = static_cast<int>(feSpaces.size());
......
AMDiS/src/FixVec.h
View file @ 986197b6
......@@ -95,7 +95,7 @@ namespace AMDiS {
{
TEST_EXIT_DBG(initType == VALUE_LIST)("wrong initType or wrong initializer\n");
setValues(ini);
};
}
/** \brief
* constructor with default value initialisation. initType must be
......@@ -114,7 +114,7 @@ namespace AMDiS {
inline void init(int dim)
{
this->resize(calcSize(dim));
};