diff --git a/AMDiS/Makefile.in b/AMDiS/Makefile.in index e7566807f6e3333475b563ca70bfe29bceffb31e..e9c5bf1ac8d8fe42b6542b15014796a2e5651527 100644 --- a/AMDiS/Makefile.in +++ b/AMDiS/Makefile.in @@ -140,7 +140,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PETSC_DIR = @PETSC_DIR@ RANLIB = @RANLIB@ -SED = @SED@ SET_MAKE = @SET_MAKE@ SHELL = @SHELL@ STRIP = @STRIP@ diff --git a/AMDiS/aclocal.m4 b/AMDiS/aclocal.m4 index 6cec4be818e153e5623e6e61d48999b94d619b09..c6b83dae620f453eff109d72b180b3a18307599f 100644 --- a/AMDiS/aclocal.m4 +++ b/AMDiS/aclocal.m4 @@ -1578,27 +1578,10 @@ linux*) # before this can be enabled. hardcode_into_libs=yes - # find out which ABI we are using - libsuff= - case "$host_cpu" in - x86_64*|s390x*|powerpc64*) - echo '[#]line __oline__ "configure"' > conftest.$ac_ext - if AC_TRY_EVAL(ac_compile); then - case `/usr/bin/file conftest.$ac_objext` in - *64-bit*) - libsuff=64 - sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" - ;; - esac - fi - rm -rf conftest* - ;; - esac - # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -4305,9 +4288,6 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1) # Is the compiler the GNU C compiler? with_gcc=$_LT_AC_TAGVAR(GCC, $1) -gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` -gcc_ver=\`gcc -dumpversion\` - # An ERE matcher. EGREP=$lt_EGREP @@ -4441,11 +4421,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1) # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1) # Dependencies to place before the objects being linked to create a # shared library. @@ -4457,7 +4437,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1) # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -4537,7 +4517,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1) # Compile-time system search path for libraries -sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +sys_lib_search_path_spec=$lt_sys_lib_search_path_spec # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -6373,7 +6353,6 @@ do done done done -IFS=$as_save_IFS lt_ac_max=0 lt_ac_count=0 # Add /usr/xpg4/bin/sed as it is typically found on Solaris @@ -6406,7 +6385,6 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do done ]) SED=$lt_cv_path_SED -AC_SUBST([SED]) AC_MSG_RESULT([$SED]) ]) diff --git a/AMDiS/bin/Makefile.in b/AMDiS/bin/Makefile.in index 85841a9f19125f1e68965f5e5147d383233ba726..0a4a66cbe7c70233c1e73e13bcbd9d5515301b6e 100644 --- a/AMDiS/bin/Makefile.in +++ b/AMDiS/bin/Makefile.in @@ -408,7 +408,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PETSC_DIR = @PETSC_DIR@ RANLIB = @RANLIB@ -SED = @SED@ SET_MAKE = @SET_MAKE@ SHELL = @SHELL@ STRIP = @STRIP@ diff --git a/AMDiS/configure b/AMDiS/configure index 5d40cff820352854455581d98cfc9ba1be51fc47..b4b86c5b1ace0f94d81500d481763d162ccdc3f7 100755 --- a/AMDiS/configure +++ b/AMDiS/configure @@ -462,7 +462,7 @@ ac_includes_default="\ # include <unistd.h> #endif" -ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os SED EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS' +ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS' ac_subst_files='' # Initialize some variables set by options. @@ -3967,7 +3967,6 @@ do done done done -IFS=$as_save_IFS lt_ac_max=0 lt_ac_count=0 # Add /usr/xpg4/bin/sed as it is typically found on Solaris @@ -4002,7 +4001,6 @@ done fi SED=$lt_cv_path_SED - echo "$as_me:$LINENO: result: $SED" >&5 echo "${ECHO_T}$SED" >&6 @@ -4443,7 +4441,7 @@ ia64-*-hpux*) ;; *-*-irix6*) # Find out which ABI we are using. - echo '#line 4446 "configure"' > conftest.$ac_ext + echo '#line 4444 "configure"' > conftest.$ac_ext if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 (eval $ac_compile) 2>&5 ac_status=$? @@ -5578,7 +5576,7 @@ fi # Provide some information about the compiler. -echo "$as_me:5581:" \ +echo "$as_me:5579:" \ "checking for Fortran 77 compiler version" >&5 ac_compiler=`set X $ac_compile; echo $2` { (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5 @@ -6641,11 +6639,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:6644: $lt_compile\"" >&5) + (eval echo "\"\$as_me:6642: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:6648: \$? = $ac_status" >&5 + echo "$as_me:6646: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -6909,11 +6907,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:6912: $lt_compile\"" >&5) + (eval echo "\"\$as_me:6910: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:6916: \$? = $ac_status" >&5 + echo "$as_me:6914: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -7013,11 +7011,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:7016: $lt_compile\"" >&5) + (eval echo "\"\$as_me:7014: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:7020: \$? = $ac_status" >&5 + echo "$as_me:7018: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -8478,31 +8476,10 @@ linux*) # before this can be enabled. hardcode_into_libs=yes - # find out which ABI we are using - libsuff= - case "$host_cpu" in - x86_64*|s390x*|powerpc64*) - echo '#line 8485 "configure"' > conftest.$ac_ext - if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 - (eval $ac_compile) 2>&5 - ac_status=$? - echo "$as_me:$LINENO: \$? = $ac_status" >&5 - (exit $ac_status); }; then - case `/usr/bin/file conftest.$ac_objext` in - *64-bit*) - libsuff=64 - sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" - ;; - esac - fi - rm -rf conftest* - ;; - esac - # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -9379,7 +9356,7 @@ else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext <<EOF -#line 9382 "configure" +#line 9359 "configure" #include "confdefs.h" #if HAVE_DLFCN_H @@ -9479,7 +9456,7 @@ else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext <<EOF -#line 9482 "configure" +#line 9459 "configure" #include "confdefs.h" #if HAVE_DLFCN_H @@ -9810,9 +9787,6 @@ CC=$lt_compiler # Is the compiler the GNU C compiler? with_gcc=$GCC -gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` -gcc_ver=\`gcc -dumpversion\` - # An ERE matcher. EGREP=$lt_EGREP @@ -9946,11 +9920,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=\`echo $lt_predep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +predep_objects=$lt_predep_objects # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=\`echo $lt_postdep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +postdep_objects=$lt_postdep_objects # Dependencies to place before the objects being linked to create a # shared library. @@ -9962,7 +9936,7 @@ postdeps=$lt_postdeps # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=\`echo $lt_compiler_lib_search_path | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +compiler_lib_search_path=$lt_compiler_lib_search_path # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -10042,7 +10016,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs # Compile-time system search path for libraries -sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +sys_lib_search_path_spec=$lt_sys_lib_search_path_spec # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -11822,11 +11796,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:11825: $lt_compile\"" >&5) + (eval echo "\"\$as_me:11799: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:11829: \$? = $ac_status" >&5 + echo "$as_me:11803: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -11926,11 +11900,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:11929: $lt_compile\"" >&5) + (eval echo "\"\$as_me:11903: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:11933: \$? = $ac_status" >&5 + echo "$as_me:11907: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -12458,31 +12432,10 @@ linux*) # before this can be enabled. hardcode_into_libs=yes - # find out which ABI we are using - libsuff= - case "$host_cpu" in - x86_64*|s390x*|powerpc64*) - echo '#line 12465 "configure"' > conftest.$ac_ext - if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 - (eval $ac_compile) 2>&5 - ac_status=$? - echo "$as_me:$LINENO: \$? = $ac_status" >&5 - (exit $ac_status); }; then - case `/usr/bin/file conftest.$ac_objext` in - *64-bit*) - libsuff=64 - sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" - ;; - esac - fi - rm -rf conftest* - ;; - esac - # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -12866,9 +12819,6 @@ CC=$lt_compiler_CXX # Is the compiler the GNU C compiler? with_gcc=$GCC_CXX -gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` -gcc_ver=\`gcc -dumpversion\` - # An ERE matcher. EGREP=$lt_EGREP @@ -13002,11 +12952,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=\`echo $lt_predep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +predep_objects=$lt_predep_objects_CXX # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=\`echo $lt_postdep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +postdep_objects=$lt_postdep_objects_CXX # Dependencies to place before the objects being linked to create a # shared library. @@ -13018,7 +12968,7 @@ postdeps=$lt_postdeps_CXX # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +compiler_lib_search_path=$lt_compiler_lib_search_path_CXX # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -13098,7 +13048,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_CXX # Compile-time system search path for libraries -sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +sys_lib_search_path_spec=$lt_sys_lib_search_path_spec # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -13520,11 +13470,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:13523: $lt_compile\"" >&5) + (eval echo "\"\$as_me:13473: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:13527: \$? = $ac_status" >&5 + echo "$as_me:13477: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -13624,11 +13574,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:13627: $lt_compile\"" >&5) + (eval echo "\"\$as_me:13577: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:13631: \$? = $ac_status" >&5 + echo "$as_me:13581: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -15069,31 +15019,10 @@ linux*) # before this can be enabled. hardcode_into_libs=yes - # find out which ABI we are using - libsuff= - case "$host_cpu" in - x86_64*|s390x*|powerpc64*) - echo '#line 15076 "configure"' > conftest.$ac_ext - if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 - (eval $ac_compile) 2>&5 - ac_status=$? - echo "$as_me:$LINENO: \$? = $ac_status" >&5 - (exit $ac_status); }; then - case `/usr/bin/file conftest.$ac_objext` in - *64-bit*) - libsuff=64 - sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" - ;; - esac - fi - rm -rf conftest* - ;; - esac - # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -15477,9 +15406,6 @@ CC=$lt_compiler_F77 # Is the compiler the GNU C compiler? with_gcc=$GCC_F77 -gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` -gcc_ver=\`gcc -dumpversion\` - # An ERE matcher. EGREP=$lt_EGREP @@ -15613,11 +15539,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=\`echo $lt_predep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +predep_objects=$lt_predep_objects_F77 # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=\`echo $lt_postdep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +postdep_objects=$lt_postdep_objects_F77 # Dependencies to place before the objects being linked to create a # shared library. @@ -15629,7 +15555,7 @@ postdeps=$lt_postdeps_F77 # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +compiler_lib_search_path=$lt_compiler_lib_search_path_F77 # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -15709,7 +15635,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_F77 # Compile-time system search path for libraries -sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +sys_lib_search_path_spec=$lt_sys_lib_search_path_spec # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -15851,11 +15777,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:15854: $lt_compile\"" >&5) + (eval echo "\"\$as_me:15780: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:15858: \$? = $ac_status" >&5 + echo "$as_me:15784: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -16119,11 +16045,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:16122: $lt_compile\"" >&5) + (eval echo "\"\$as_me:16048: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:16126: \$? = $ac_status" >&5 + echo "$as_me:16052: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -16223,11 +16149,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:16226: $lt_compile\"" >&5) + (eval echo "\"\$as_me:16152: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:16230: \$? = $ac_status" >&5 + echo "$as_me:16156: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -17688,31 +17614,10 @@ linux*) # before this can be enabled. hardcode_into_libs=yes - # find out which ABI we are using - libsuff= - case "$host_cpu" in - x86_64*|s390x*|powerpc64*) - echo '#line 17695 "configure"' > conftest.$ac_ext - if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 - (eval $ac_compile) 2>&5 - ac_status=$? - echo "$as_me:$LINENO: \$? = $ac_status" >&5 - (exit $ac_status); }; then - case `/usr/bin/file conftest.$ac_objext` in - *64-bit*) - libsuff=64 - sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" - ;; - esac - fi - rm -rf conftest* - ;; - esac - # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -18096,9 +18001,6 @@ CC=$lt_compiler_GCJ # Is the compiler the GNU C compiler? with_gcc=$GCC_GCJ -gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` -gcc_ver=\`gcc -dumpversion\` - # An ERE matcher. EGREP=$lt_EGREP @@ -18232,11 +18134,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=\`echo $lt_predep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +predep_objects=$lt_predep_objects_GCJ # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=\`echo $lt_postdep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +postdep_objects=$lt_postdep_objects_GCJ # Dependencies to place before the objects being linked to create a # shared library. @@ -18248,7 +18150,7 @@ postdeps=$lt_postdeps_GCJ # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +compiler_lib_search_path=$lt_compiler_lib_search_path_GCJ # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -18328,7 +18230,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_GCJ # Compile-time system search path for libraries -sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +sys_lib_search_path_spec=$lt_sys_lib_search_path_spec # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -18580,9 +18482,6 @@ CC=$lt_compiler_RC # Is the compiler the GNU C compiler? with_gcc=$GCC_RC -gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` -gcc_ver=\`gcc -dumpversion\` - # An ERE matcher. EGREP=$lt_EGREP @@ -18716,11 +18615,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=\`echo $lt_predep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +predep_objects=$lt_predep_objects_RC # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=\`echo $lt_postdep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +postdep_objects=$lt_postdep_objects_RC # Dependencies to place before the objects being linked to create a # shared library. @@ -18732,7 +18631,7 @@ postdeps=$lt_postdeps_RC # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +compiler_lib_search_path=$lt_compiler_lib_search_path_RC # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -18812,7 +18711,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_RC # Compile-time system search path for libraries -sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` +sys_lib_search_path_spec=$lt_sys_lib_search_path_spec # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -19736,7 +19635,6 @@ s,@host@,$host,;t t s,@host_cpu@,$host_cpu,;t t s,@host_vendor@,$host_vendor,;t t s,@host_os@,$host_os,;t t -s,@SED@,$SED,;t t s,@EGREP@,$EGREP,;t t s,@LN_S@,$LN_S,;t t s,@ECHO@,$ECHO,;t t diff --git a/AMDiS/libtool b/AMDiS/libtool index e96f67065e881c5fbc2155783211a810082e9175..d6ae6aec3bdfe931f7738cb747117b7a8a279992 100755 --- a/AMDiS/libtool +++ b/AMDiS/libtool @@ -30,10 +30,10 @@ # the same distribution terms that you use for the rest of that program. # A sed program that does not truncate output. -SED="/bin/sed" +SED="/usr/bin/sed" # Sed that helps us avoid accidentally triggering echo(1) options like -n. -Xsed="/bin/sed -e 1s/^X//" +Xsed="/usr/bin/sed -e 1s/^X//" # The HP-UX ksh and POSIX shell print the target directory to stdout # if CDPATH is set. @@ -44,7 +44,7 @@ available_tags=" CXX F77" # ### BEGIN LIBTOOL CONFIG -# Libtool was configured on host NWRW15: +# Libtool was configured on host deimos102: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -66,12 +66,12 @@ fast_install=yes # The host system. host_alias= -host=i686-pc-linux-gnu +host=x86_64-unknown-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=i686-pc-linux-gnu +build=x86_64-unknown-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -82,25 +82,22 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="gcc" +LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" # LTCC compiler flags. LTCFLAGS="-g -O2" # A language-specific compiler. -CC="gcc" +CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" # Is the compiler the GNU C compiler? with_gcc=yes -gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'` -gcc_ver=`gcc -dumpversion` - # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/bin/ld" +LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" # Whether we need hard or soft links. LN_S="ln -s" @@ -174,7 +171,7 @@ dlopen_self=unknown dlopen_self_static=unknown # Compiler flag to prevent dynamic linking. -link_static_flag="-static" +link_static_flag="" # Compiler flag to turn off builtin functions. no_builtin_flag=" -fno-builtin" @@ -232,11 +229,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +predep_objects="" # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +postdep_objects="" # Dependencies to place before the objects being linked to create a # shared library. @@ -248,7 +245,7 @@ postdeps="" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +compiler_lib_search_path="" # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -328,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/" # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" @@ -6763,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac` # End: # ### BEGIN LIBTOOL TAG CONFIG: CXX -# Libtool was configured on host NWRW15: +# Libtool was configured on host deimos102: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -6785,12 +6782,12 @@ fast_install=yes # The host system. host_alias= -host=i686-pc-linux-gnu +host=x86_64-unknown-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=i686-pc-linux-gnu +build=x86_64-unknown-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -6801,25 +6798,22 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="gcc" +LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" # LTCC compiler flags. LTCFLAGS="-g -O2" # A language-specific compiler. -CC="g++" +CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC" # Is the compiler the GNU C compiler? with_gcc=yes -gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'` -gcc_ver=`gcc -dumpversion` - # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/bin/ld" +LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" # Whether we need hard or soft links. LN_S="ln -s" @@ -6893,7 +6887,7 @@ dlopen_self=unknown dlopen_self_static=unknown # Compiler flag to prevent dynamic linking. -link_static_flag="-static" +link_static_flag="" # Compiler flag to turn off builtin functions. no_builtin_flag=" -fno-builtin" @@ -6948,11 +6942,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o" # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o" # Dependencies to place before the objects being linked to create a # shared library. @@ -6960,11 +6954,11 @@ predeps="" # Dependencies to place after the objects being linked to create a # shared library. -postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s" +postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=`echo "-L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -7044,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/" # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" @@ -7071,7 +7065,7 @@ include_expsyms="" # ### BEGIN LIBTOOL TAG CONFIG: F77 -# Libtool was configured on host NWRW15: +# Libtool was configured on host deimos102: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -7093,12 +7087,12 @@ fast_install=yes # The host system. host_alias= -host=i686-pc-linux-gnu +host=x86_64-unknown-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=i686-pc-linux-gnu +build=x86_64-unknown-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -7109,7 +7103,7 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="gcc" +LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" # LTCC compiler flags. LTCFLAGS="-g -O2" @@ -7118,16 +7112,13 @@ LTCFLAGS="-g -O2" CC="g77" # Is the compiler the GNU C compiler? -with_gcc=yes - -gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'` -gcc_ver=`gcc -dumpversion` +with_gcc= # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/bin/ld" +LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" # Whether we need hard or soft links. LN_S="ln -s" @@ -7259,11 +7250,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +predep_objects="" # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +postdep_objects="" # Dependencies to place before the objects being linked to create a # shared library. @@ -7275,7 +7266,7 @@ postdeps="" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +compiler_lib_search_path="" # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -7355,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` +sys_lib_search_path_spec=" /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/" # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" diff --git a/AMDiS/src/parallel/ParallelDomainDbg.cc b/AMDiS/src/parallel/ParallelDomainDbg.cc new file mode 100644 index 0000000000000000000000000000000000000000..eaabf5cb089010b7bccd72842ea1df11d4c03545 --- /dev/null +++ b/AMDiS/src/parallel/ParallelDomainDbg.cc @@ -0,0 +1,316 @@ +#include "ParallelDomainDbg.h" +#include "ParallelDomainBase.h" +#include "ProblemVec.h" +#include "DOFVector.h" +#include "FixVec.h" +#include "StdMpi.h" +#include "Debug.h" + +namespace AMDiS { + + void ParallelDomainDbg::testInteriorBoundary(ParallelDomainBase &pdb) + { + FUNCNAME("ParallelDomainDbg::testInteriorBoundary()"); + + typedef ParallelDomainBase::RankToBoundMap RankToBoundMap; + + std::vector<int*> sendBuffers, recvBuffers; + + MPI::Request request[pdb.myIntBoundary.boundary.size() + + pdb.otherIntBoundary.boundary.size()]; + int requestCounter = 0; + + for (RankToBoundMap::iterator rankIt = pdb.myIntBoundary.boundary.begin(); + rankIt != pdb.myIntBoundary.boundary.end(); ++rankIt) { + + int nSendInt = rankIt->second.size(); + int* buffer = new int[nSendInt]; + for (int i = 0; i < nSendInt; i++) + buffer[i] = (rankIt->second)[i].rankObj.elIndex; + + sendBuffers.push_back(buffer); + + request[requestCounter++] = + pdb.mpiComm.Isend(buffer, nSendInt, MPI_INT, rankIt->first, 0); + } + + for (RankToBoundMap::iterator rankIt = pdb.otherIntBoundary.boundary.begin(); + rankIt != pdb.otherIntBoundary.boundary.end(); ++rankIt) { + int nRecvInt = rankIt->second.size(); + int *buffer = new int[nRecvInt]; + recvBuffers.push_back(buffer); + + request[requestCounter++] = + pdb.mpiComm.Irecv(buffer, nRecvInt, MPI_INT, rankIt->first, 0); + } + + MPI::Request::Waitall(requestCounter, request); + + for (int i = 0; i < static_cast<int>(sendBuffers.size()); i++) + delete [] sendBuffers[i]; + + int bufCounter = 0; + for (RankToBoundMap::iterator rankIt = pdb.otherIntBoundary.boundary.begin(); + rankIt != pdb.otherIntBoundary.boundary.end(); ++rankIt) { + + TEST_EXIT(rankIt->second.size() == pdb.otherIntBoundary.boundary[rankIt->first].size()) + ("Boundaries does not fit together!\n"); + + for (int i = 0; i < static_cast<int>(rankIt->second.size()); i++) { + int elIndex1 = recvBuffers[bufCounter][i]; + int elIndex2 = pdb.otherIntBoundary.boundary[rankIt->first][i].neighObj.elIndex; + + TEST_EXIT(elIndex1 == elIndex2)("Wrong element index at interior boundary!\n"); + } + + delete [] recvBuffers[bufCounter++]; + } + } + + + void ParallelDomainDbg::testCommonDofs(ParallelDomainBase &pdb, bool printCoords) + { + FUNCNAME("ParallelDomainDbg::testCommonDofs()"); + + clock_t first = clock(); + + int testCommonDofs = 1; + GET_PARAMETER(0, "dbg->test common dofs", "%d", &testCommonDofs); + if (testCommonDofs == 0) { + MSG("Skip test common dofs!\n"); + return; + } + + /// Defines a mapping type from rank numbers to sets of coordinates. + typedef std::map<int, std::vector<WorldVector<double> > > RankToCoords; + + /// Defines a mapping type from rank numbers to sets of DOFs. + typedef std::map<int, DofContainer> RankToDofContainer; + + // Maps to each neighbour rank an array of WorldVectors. This array contains the + // coordinates of all dofs this rank shares on the interior boundary with the + // neighbour rank. A rank sends the coordinates to another rank, if it owns the + // boundarys dof. + RankToCoords sendCoords; + + // A rank receives all boundary dofs that are at its interior boundaries but are + // not owned by the rank. This map stores for each rank the coordinates of dofs + // this rank expectes to receive from. + RankToCoords recvCoords; + + DOFVector<WorldVector<double> > coords(pdb.feSpace, "dofCorrds"); + pdb.mesh->getDofIndexCoords(pdb.feSpace, coords); + + for (RankToDofContainer::iterator it = pdb.sendDofs.begin(); + it != pdb.sendDofs.end(); ++it) + for (DofContainer::iterator dofIt = it->second.begin(); + dofIt != it->second.end(); ++dofIt) + sendCoords[it->first].push_back(coords[**dofIt]); + + for (RankToDofContainer::iterator it = pdb.recvDofs.begin(); + it != pdb.recvDofs.end(); ++it) + for (DofContainer::iterator dofIt = it->second.begin(); + dofIt != it->second.end(); ++dofIt) + recvCoords[it->first].push_back(coords[**dofIt]); + + std::vector<int> sendSize(pdb.mpiSize, 0); + std::vector<int> recvSize(pdb.mpiSize, 0); + std::vector<int> recvSizeBuffer(pdb.mpiSize, 0); + MPI::Request request[(pdb.mpiSize - 1) * 2]; + int requestCounter = 0; + + for (RankToCoords::iterator it = sendCoords.begin(); it != sendCoords.end(); ++it) + sendSize[it->first] = it->second.size(); + + for (RankToCoords::iterator it = recvCoords.begin(); it != recvCoords.end(); ++it) + recvSize[it->first] = it->second.size(); + + for (int i = 0; i < pdb.mpiSize; i++) { + if (i == pdb.mpiRank) + continue; + + request[requestCounter++] = pdb.mpiComm.Isend(&(sendSize[i]), 1, MPI_INT, i, 0); + } + + for (int i = 0; i < pdb.mpiSize; i++) { + if (i == pdb.mpiRank) + continue; + + request[requestCounter++] = pdb.mpiComm.Irecv(&(recvSizeBuffer[i]), 1, MPI_INT, i, 0); + } + + MPI::Request::Waitall(requestCounter, request); + + + for (int i = 0; i < pdb.mpiSize; i++) { + if (i == pdb.mpiRank) + continue; + + if (recvSize[i] != recvSizeBuffer[i]) { + std::cout << "Error: MPI rank " << pdb.mpiRank << " expectes to receive " + << recvSize[i] << " DOFs from rank " << i << ". But this rank sends " + << recvSizeBuffer[i] << " DOFs!" << std::endl; + + ERROR_EXIT("Should not happen!\n"); + } + } + + // === Now we know that the number of send and received DOFs fits together. === + // === So we can check if also the coordinates of the communicated DOFs are === + // === the same on both corresponding ranks. === + + typedef std::vector<WorldVector<double> > CoordsVec; + StdMpi<CoordsVec> stdMpi(pdb.mpiComm, true); + stdMpi.send(sendCoords); + stdMpi.recv(recvCoords); + stdMpi.startCommunication<double>(MPI_DOUBLE); + + double eps = 1e-13; + int dimOfWorld = Global::getGeo(WORLD); + + // === Compare the received with the expected coordinates. === + + for (RankToCoords::iterator it = stdMpi.getRecvData().begin(); + it != stdMpi.getRecvData().end(); ++it) { + for (int i = 0; i < static_cast<int>(it->second.size()); i++) { + for (int j = 0; j < dimOfWorld; j++) { + bool c = fabs((it->second)[i][j] - recvCoords[it->first][i][j]) < eps; + + // === Print error message if the coordinates are not the same. === + + if (printCoords && !c) { + std::cout.precision(5); + std::cout << "[DBG] i = " << i << std::endl; + std::cout << "[DBG] Rank " << pdb.mpiRank << " from rank " << it->first + << " expect coords ("; + for (int k = 0; k < dimOfWorld; k++) { + std::cout << recvCoords[it->first][i][k]; + if (k + 1 < dimOfWorld) + std::cout << " / "; + } + std::cout << ") received coords ("; + for (int k = 0; k < dimOfWorld; k++) { + std::cout << (it->second)[i][k]; + if (k + 1 < dimOfWorld) + std::cout << " / "; + } + std::cout << ")" << std::endl; + + debug::printInfoByDof(pdb.feSpace, *(pdb.recvDofs[it->first][i])); + } + + TEST_EXIT(c)("Wrong DOFs in rank %d!\n", pdb.mpiRank); + } + } + } + + INFO(pdb.info, 8)("Test common dofs needed %.5f seconds\n", TIME_USED(first, clock())); + } + + + void ParallelDomainDbg::printMapLocalGlobal(ParallelDomainBase &pdb, int rank) + { + if (rank == -1 || pdb.mpiRank == rank) { + std::cout << "====== DOF MAP LOCAL -> GLOBAL ====== " << std::endl; + + typedef std::map<DegreeOfFreedom, DegreeOfFreedom> DofMapping; + typedef std::map<int, DofContainer> RankToDofContainer; + + for (DofMapping::iterator it = pdb.mapLocalGlobalDofs.begin(); + it != pdb.mapLocalGlobalDofs.end(); it++) { + DegreeOfFreedom localdof = -1; + if (pdb.mapLocalToDofIndex.count(it->first) > 0) + localdof = pdb.mapLocalToDofIndex[it->first]; + + std::cout << "DOF " << it->first << " " + << it->second << " " + << localdof << std::endl; + WorldVector<double> coords; + pdb.mesh->getDofIndexCoords(it->first, pdb.feSpace, coords); + coords.print(); + + for (RankToDofContainer::iterator rankit = pdb.sendDofs.begin(); + rankit != pdb.sendDofs.end(); ++rankit) { + for (DofContainer::iterator dofit = rankit->second.begin(); + dofit != rankit->second.end(); ++dofit) + if (**dofit == it->first) + std::cout << "SEND DOF TO " << rankit->first << std::endl; + } + + for (RankToDofContainer::iterator rankit = pdb.recvDofs.begin(); + rankit != pdb.recvDofs.end(); ++rankit) { + for (DofContainer::iterator dofit = rankit->second.begin(); + dofit != rankit->second.end(); ++dofit) + if (**dofit == it->first) + std::cout << "RECV DOF FROM " << rankit->first << std::endl; + } + + std::cout << "------" << std::endl; + } + } + } + + + void ParallelDomainDbg::printMapPeriodic(ParallelDomainBase &pdb, int rank) + { + FUNCNAME("ParallelDomainDbg::printMapPeriodic()"); + + typedef std::map<DegreeOfFreedom, DegreeOfFreedom> DofMapping; + typedef std::map<DegreeOfFreedom, std::set<DegreeOfFreedom> > PeriodicDofMap; + + if (rank == -1 || pdb.mpiRank == rank) { + std::cout << "====== DOF MAP PERIODIC ====== " << std::endl; + + for (PeriodicDofMap::iterator it = pdb.periodicDof.begin(); + it != pdb.periodicDof.end(); ++it) { + std::cout << "DOF MAP " << it->first << ": "; + for (std::set<DegreeOfFreedom>::iterator dofit = it->second.begin(); + dofit != it->second.end(); ++dofit) + std::cout << *dofit << " "; + std::cout << std::endl; + + DegreeOfFreedom localdof = -1; + for (DofMapping::iterator dofIt = pdb.mapLocalGlobalDofs.begin(); + dofIt != pdb.mapLocalGlobalDofs.end(); ++dofIt) + if (dofIt->second == it->first) + localdof = dofIt->first; + + TEST_EXIT(localdof != -1)("There is something wrong!\n"); + + WorldVector<double> coords; + pdb.mesh->getDofIndexCoords(localdof, pdb.feSpace, coords); + coords.print(); + } + } + } + + + void ParallelDomainDbg::printRankDofs(ParallelDomainBase &pdb, + int rank, + DofContainer& rankDofs, + DofContainer& rankAllDofs) + { + if (rank == -1 || pdb.mpiRank == rank) { + std::cout << "====== RANK DOF INFORMATION ====== " << std::endl; + + std::cout << " RANK OWNED DOFS: " << std::endl; + for (DofContainer::iterator dofit = rankDofs.begin(); + dofit != rankDofs.end(); ++dofit) { + std::cout << " " << **dofit << std::endl; + WorldVector<double> coords; + pdb.mesh->getDofIndexCoords(*dofit, pdb.feSpace, coords); + coords.print(); + } + + std::cout << " RANK ALL DOFS: " << std::endl; + for (DofContainer::iterator dofit = rankAllDofs.begin(); + dofit != rankAllDofs.end(); ++dofit) { + std::cout << " " << **dofit << std::endl; + WorldVector<double> coords; + pdb.mesh->getDofIndexCoords(*dofit, pdb.feSpace, coords); + coords.print(); + } + } + } + +} diff --git a/AMDiS/src/parallel/ParallelDomainDbg.h b/AMDiS/src/parallel/ParallelDomainDbg.h new file mode 100644 index 0000000000000000000000000000000000000000..614d816eaae5466ba6a7785ec3732bdc1521afff --- /dev/null +++ b/AMDiS/src/parallel/ParallelDomainDbg.h @@ -0,0 +1,89 @@ +// ============================================================================ +// == == +// == AMDiS - Adaptive multidimensional simulations == +// == == +// ============================================================================ +// == == +// == TU Dresden == +// == == +// == Institut f�r Wissenschaftliches Rechnen == +// == Zellescher Weg 12-14 == +// == 01069 Dresden == +// == germany == +// == == +// ============================================================================ +// == == +// == https://gforge.zih.tu-dresden.de/projects/amdis/ == +// == == +// ============================================================================ + +/** \file ParallelDomainDbg.h */ + +#ifndef AMDIS_PARALLELDOMAINDBG_H +#define AMDIS_PARALLELDOMAINDBG_H + +#include "parallel/ParallelDomainBase.h" + +namespace AMDiS { + + class ParallelDomainDbg { + public: + /** \brief + * Tests the interior boundaries on all ranks if their order fits together. + * + * \param[in] pdb Parallel problem definition used for debugging. + */ + static void testInteriorBoundary(ParallelDomainBase &pdb); + + /** \brief + * This function is used for debugging only. It traverses all interior boundaries + * and compares the dof indices on them with the dof indices of the boundarys + * neighbours. The function fails, when dof indices on an interior boundary do + * not fit together. + * + * \param[in] pdb Parallel problem definition used for debugging. + * \param[in] printCoords If true, the coords of all common dofs are printed + * to the screen. + */ + static void testCommonDofs(ParallelDomainBase &pdb, bool printCoords = false); + + /** \brief + * This function is used for debugging only. It prints all information from + * the local to global dof mapping, see \ref mapLocalGlobalDofs. + * + * \param[in] pdb Parallel problem definition used for debugging. + * \param[in] rank If specified, only the information from the given rank + * is printed. + */ + static void printMapLocalGlobal(ParallelDomainBase &pdb, int rank = -1); + + /** \brief + * This function is used for debugging only. It prints all information about + * the periodic mapping of dofs, that are on periodic boundaries. + * + * \param[in] pdb Parallel problem definition used for debugging. + * \param[in] rank If specified, only the information from the given rank + * is printed. + */ + static void printMapPeriodic(ParallelDomainBase &pdb, int rank = -1); + + /** \brief + * This function is used for debugging only. It prints information about dofs + * in rank's partition. + * + * \param[in] pdb Parallel problem definition used for debugging. + * \param[in] rank If specified, only the information from the given + * rank is printed. + * \param[in] rankDofs List of all dofs in ranks partition that are owned + * by rank. + * \param[in] rankAllDofs List of all dofs in ranks partition. + */ + static void printRankDofs(ParallelDomainBase &pdb, + int rank, + DofContainer& rankDofs, + DofContainer& rankAllDofs); + }; + +} // namespace AMDiS + +#endif