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Commit cbc573e3 authored by Thomas Witkowski's avatar Thomas Witkowski
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Fixed refinement bug in 3D.

parent abac1efd
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AMDiS/libtool
View file @ cbc573e3
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host deimos102:
# Libtool was configured on host deimos103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -6760,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host deimos102:
# Libtool was configured on host deimos103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7065,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host deimos102:
# Libtool was configured on host deimos103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......
AMDiS/other/include/Makefile_AMDiS.mk
View file @ cbc573e3
......@@ -68,6 +68,10 @@ endif
# ============================================================================
ifeq ($(strip $(USE_PARALLEL_AMDIS)), 1)
include ${PETSC_DIR}/conf/variables
CFLAGS = ${PETSC_CC_INCLUDES}
FFLAGS = ${PETSC_FC_INCLUDES}
ifeq ($(strip $(USE_SERVER)), mars)
ifeq ($(strip $(USE_COMPILER)), gcc)
COMPILE = g++
......@@ -78,8 +82,9 @@ ifeq ($(strip $(USE_PARALLEL_AMDIS)), 1)
COMPILE = $(MPI_DIR)/bin/mpiCC
endif
LIBS += $(PARMETIS_LIB) -lmpi
CPPFLAGS += -DHAVE_PARALLEL_DOMAIN_AMDIS
INCLUDES += $(PETSC_INCLUDE)
LIBS += $(PARMETIS_LIB) -lmpi $(PETSC_LIB)
else
ifeq ($(strip $(USE_COMPILER)), gcc)
COMPILE = g++
......@@ -116,7 +121,12 @@ endif
# ============================================================================
LIBTOOL = $(AMDIS_DIR)/libtool
LINK = $(LIBTOOL) --mode=link $(COMPILE)
ifeq ($(strip $(USE_PARALLEL_AMDIS)), 1)
LINK = $(LIBTOOL) --tag=mpiCC --mode=link $(COMPILE)
else
LINK = $(LIBTOOL) --mode=link $(COMPILE)
endif
# ============================================================================
# ===== rules ================================================================
......
AMDiS/src/Element.h
View file @ cbc573e3
......@@ -106,7 +106,7 @@ namespace AMDiS {
/// Returns \ref child[i], i=0,1
inline Element* getChild(int i) const
{
TEST_EXIT_DBG(i == 0 || i == 1)("i must be 0 or 1\n");
TEST_EXIT_DBG(i == 0 || i == 1)("There is only child 0 or 1! (i = %d)\n", i);
return child[i];
}
......
AMDiS/src/Mesh.cc
View file @ cbc573e3
......@@ -1149,6 +1149,7 @@ namespace AMDiS {
initialized = true;
}
bool Mesh::associated(DegreeOfFreedom dof1, DegreeOfFreedom dof2)
{
std::map<BoundaryType, VertexVector*>::iterator it;
......@@ -1159,6 +1160,7 @@ namespace AMDiS {
return false;
}
bool Mesh::indirectlyAssociated(DegreeOfFreedom dof1, DegreeOfFreedom dof2)
{
std::vector<DegreeOfFreedom> associatedToDOF1;
......
AMDiS/src/RefinementManager3d.cc
View file @ cbc573e3
......@@ -141,6 +141,7 @@ namespace AMDiS {
int index)
{
FUNCNAME("RefinementManager3d::fillPatchConnectivity");
Element *el = ref_list->getElement(index), *neigh;
int el_type = ref_list->getType(index);
int n_type = 0;
......@@ -221,7 +222,7 @@ namespace AMDiS {
node1 = mesh->getNode(FACE) + j_neigh;
TEST_EXIT_DBG(neigh->getChild(j)->getDOF(node1))
("no dof on neighbour %d at node %d\n",
("No DOF on neighbour %d at node %d!\n",
neigh->getChild(j)->getIndex(), node1);
(const_cast<Element*>(el->getChild(i)))->
......@@ -394,7 +395,7 @@ namespace AMDiS {
dynamic_cast<Tetrahedron*>(const_cast<Element*>((*el_info)->getElement()));
if ((*el_info)->getNeighbour(3 - dir) == NULL)
return 1;
return 1;
int opp_v = (*el_info)->getOppVertex(3-dir);
ElInfo *neigh_info = stack->traverseNeighbour3d((*el_info), 3 - dir);
......@@ -528,24 +529,26 @@ namespace AMDiS {
break;
}
}
if (neigh == el) {
(*el_info) = neigh_info;
return 0;
}
/****************************************************************************/
/* the domain's boundary is reached; loop back to the starting el */
/****************************************************************************/
i = *n_neigh-1;
i = *n_neigh - 1;
opp_v = refineList->getOppVertex(i, 0);
do {
TEST_EXIT_DBG(neigh_info->getNeighbour(opp_v) && i > 0)
("while looping back domains boundary was reached or i == 0\n");
TEST_EXIT_DBG(neigh_info->getNeighbour(opp_v) && i > 0)
("While looping back domains boundary was reached or i == 0\n");
opp_v = refineList->getOppVertex(i--, 0);
neigh_info = stack->traverseNeighbour3d(neigh_info, opp_v);
} while (neigh_info->getElement() != el);
(*el_info) = neigh_info;
return 1;
......@@ -555,6 +558,7 @@ namespace AMDiS {
ElInfo* RefinementManager3d::refineFunction(ElInfo* el_info)
{
FUNCNAME("RefinementManager3d::refineFunction()");
int bound = false;
DegreeOfFreedom *edge[2];
......@@ -618,7 +622,7 @@ namespace AMDiS {
std::map<int, VertexVector*>::iterator it;
std::map<int, VertexVector*>::iterator end = mesh->getPeriodicAssociations().end();
while(edge[0] != NULL) {
while (edge[0] != NULL) {
periodicList = ref_list->periodicSplit(edge,
next_edge,
&n_neigh,
......@@ -635,13 +639,12 @@ namespace AMDiS {
for (it = mesh->getPeriodicAssociations().begin(); it != end; ++it) {
if (it->second) {
if (((*(it->second))[edge[0][0]] == last_edge[0][0] &&
(*(it->second))[edge[1][0]] == last_edge[1][0]) ||
((*(it->second))[edge[0][0]] == last_edge[1][0] &&
(*(it->second))[edge[1][0]] == last_edge[0][0]))
{
(*(it->second))[lastNewDOF] = newDOF;
(*(it->second))[newDOF] = lastNewDOF;
}
(*(it->second))[edge[1][0]] == last_edge[1][0]) ||
((*(it->second))[edge[0][0]] == last_edge[1][0] &&
(*(it->second))[edge[1][0]] == last_edge[0][0])) {
(*(it->second))[lastNewDOF] = newDOF;
(*(it->second))[newDOF] = lastNewDOF;
}
}
}
}
......@@ -658,13 +661,12 @@ namespace AMDiS {
for (it = mesh->getPeriodicAssociations().begin(); it != end; ++it) {
if (it->second) {
if (((*(it->second))[first_edge[0][0]] == last_edge[0][0] &&
(*(it->second))[first_edge[1][0]] == last_edge[1][0]) ||
((*(it->second))[first_edge[0][0]] == last_edge[1][0] &&
(*(it->second))[first_edge[1][0]] == last_edge[0][0]))
{
(*(it->second))[lastNewDOF] = firstNewDOF;
(*(it->second))[firstNewDOF] = lastNewDOF;
}
(*(it->second))[first_edge[1][0]] == last_edge[1][0]) ||
((*(it->second))[first_edge[0][0]] == last_edge[1][0] &&
(*(it->second))[first_edge[1][0]] == last_edge[0][0])) {
(*(it->second))[lastNewDOF] = firstNewDOF;
(*(it->second))[firstNewDOF] = lastNewDOF;
}
}
}
}
......@@ -679,7 +681,7 @@ namespace AMDiS {
delete ref_list;
return(el_info);
return el_info;
}
}
AMDiS/src/Traverse.cc
View file @ cbc573e3
......@@ -487,11 +487,10 @@ namespace AMDiS {
int i = 1 - neighbour;
elinfo_stack[stack_used + 1]->fillElInfo(i, elinfo_stack[stack_used]);
if (traverse_fill_flag.isSet(Mesh::CALL_REVERSE_MODE))
info_stack[stack_used] = (i == 0 ? 2 : 1);
else
if (traverse_fill_flag.isSet(Mesh::CALL_REVERSE_MODE))
info_stack[stack_used] = (i == 0 ? 2 : 1);
else
info_stack[stack_used] = i + 1;
stack_used++;
info_stack[stack_used] = 0;
neighbour = 3;
......@@ -501,13 +500,6 @@ namespace AMDiS {
/* save information about current element and its position in the tree */
save_traverse_mel = traverse_mel;
save_stack_used = stack_used;
for (int i = stack_used; i <= save_stack_used; i++) {
save_info_stack[i] = info_stack[i];
*(save_elinfo_stack[i]) = *(elinfo_stack[i]);
}
ElInfo *old_elinfo = save_elinfo_stack[save_stack_used];
int opp_vertex = old_elinfo->getOppVertex(neighbour);
// === First phase (see 2D). ===
......@@ -533,6 +525,13 @@ namespace AMDiS {
TEST_EXIT_DBG(nb >= 0)("invalid coarse_nb %d\n",nb);
}
for (int i = stack_used; i <= save_stack_used; i++) {
save_info_stack[i] = info_stack[i];
*(save_elinfo_stack[i]) = *(elinfo_stack[i]);
}
ElInfo *old_elinfo = save_elinfo_stack[save_stack_used];
int opp_vertex = old_elinfo->getOppVertex(neighbour);
if (nb >= 0) {
// Go to macro element neighbour.
......
AMDiS/src/parallel/MeshDistributor.cc
View file @ cbc573e3
......@@ -152,7 +152,7 @@ namespace AMDiS {
// === Create periodic dof mapping, if there are periodic boundaries. ===
createPeriodicMap();
createPeriodicMap();
// === Global refinements. ===
......
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