diff --git a/AMDiS/libtool b/AMDiS/libtool index 4c12058b50051e5289ce07bce2dfe361962f4675..b24ee23d4db5c89b8becf2ee49cfa31486adc673 100755 --- a/AMDiS/libtool +++ b/AMDiS/libtool @@ -30,10 +30,10 @@ # the same distribution terms that you use for the rest of that program. # A sed program that does not truncate output. -SED="/usr/bin/sed" +SED="/bin/sed" # Sed that helps us avoid accidentally triggering echo(1) options like -n. -Xsed="/usr/bin/sed -e 1s/^X//" +Xsed="/bin/sed -e 1s/^X//" # The HP-UX ksh and POSIX shell print the target directory to stdout # if CDPATH is set. @@ -44,7 +44,7 @@ available_tags=" CXX F77" # ### BEGIN LIBTOOL CONFIG -# Libtool was configured on host deimos101: +# Libtool was configured on host NWRW15: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -66,12 +66,12 @@ fast_install=yes # The host system. host_alias= -host=x86_64-unknown-linux-gnu +host=i686-pc-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=x86_64-unknown-linux-gnu +build=i686-pc-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -82,13 +82,13 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +LTCC="gcc" # LTCC compiler flags. LTCFLAGS="-g -O2" # A language-specific compiler. -CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +CC="gcc" # Is the compiler the GNU C compiler? with_gcc=yes @@ -97,7 +97,7 @@ with_gcc=yes EGREP="grep -E" # The linker used to build libraries. -LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" +LD="/usr/bin/ld" # Whether we need hard or soft links. LN_S="ln -s" @@ -171,7 +171,7 @@ dlopen_self=unknown dlopen_self_static=unknown # Compiler flag to prevent dynamic linking. -link_static_flag="" +link_static_flag="-static" # Compiler flag to turn off builtin functions. no_builtin_flag=" -fno-builtin" @@ -325,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/" +sys_lib_search_path_spec=" /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" @@ -6760,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac` # End: # ### BEGIN LIBTOOL TAG CONFIG: CXX -# Libtool was configured on host deimos101: +# Libtool was configured on host NWRW15: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -6782,12 +6782,12 @@ fast_install=yes # The host system. host_alias= -host=x86_64-unknown-linux-gnu +host=i686-pc-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=x86_64-unknown-linux-gnu +build=i686-pc-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -6798,13 +6798,13 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +LTCC="gcc" # LTCC compiler flags. LTCFLAGS="-g -O2" # A language-specific compiler. -CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC" +CC="g++" # Is the compiler the GNU C compiler? with_gcc=yes @@ -6813,7 +6813,7 @@ with_gcc=yes EGREP="grep -E" # The linker used to build libraries. -LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" +LD="/usr/bin/ld" # Whether we need hard or soft links. LN_S="ln -s" @@ -6887,7 +6887,7 @@ dlopen_self=unknown dlopen_self_static=unknown # Compiler flag to prevent dynamic linking. -link_static_flag="" +link_static_flag="-static" # Compiler flag to turn off builtin functions. no_builtin_flag=" -fno-builtin" @@ -6942,11 +6942,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o" +predep_objects="/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o" +postdep_objects="/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" # Dependencies to place before the objects being linked to create a # shared library. @@ -6954,11 +6954,11 @@ predeps="" # Dependencies to place after the objects being linked to create a # shared library. -postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s" +postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." +compiler_lib_search_path="-L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -7038,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/" +sys_lib_search_path_spec=" /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" @@ -7065,7 +7065,7 @@ include_expsyms="" # ### BEGIN LIBTOOL TAG CONFIG: F77 -# Libtool was configured on host deimos101: +# Libtool was configured on host NWRW15: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -7087,12 +7087,12 @@ fast_install=yes # The host system. host_alias= -host=x86_64-unknown-linux-gnu +host=i686-pc-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=x86_64-unknown-linux-gnu +build=i686-pc-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -7103,7 +7103,7 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +LTCC="gcc" # LTCC compiler flags. LTCFLAGS="-g -O2" @@ -7112,13 +7112,13 @@ LTCFLAGS="-g -O2" CC="g77" # Is the compiler the GNU C compiler? -with_gcc= +with_gcc=yes # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" +LD="/usr/bin/ld" # Whether we need hard or soft links. LN_S="ln -s" @@ -7346,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=" /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/" +sys_lib_search_path_spec=" /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" diff --git a/AMDiS/src/DOFMatrix.cc b/AMDiS/src/DOFMatrix.cc index 329129005407c2611ec731f1c96f006191a63f84..1191824c52c928d8ac2ca186193346a264d38922 100644 --- a/AMDiS/src/DOFMatrix.cc +++ b/AMDiS/src/DOFMatrix.cc @@ -27,6 +27,7 @@ namespace AMDiS { elementMatrix(3, 3), nRow(0), nCol(0), + nnzPerRow(0), inserter(NULL) {} @@ -37,6 +38,7 @@ namespace AMDiS { colFESpace(colSpace), name(n), coupleMatrix(false), + nnzPerRow(0), inserter(NULL) { FUNCNAME("DOFMatrix::DOFMatrix()"); @@ -439,4 +441,14 @@ namespace AMDiS { + matrix.nnz() * sizeof(base_matrix_type::value_type); } + void DOFMatrix::startInsertion(int nnz_per_row) + { + if (inserter) { + delete inserter; + inserter = NULL; + } + + inserter = new inserter_type(matrix, nnz_per_row); + } + } diff --git a/AMDiS/src/DOFMatrix.h b/AMDiS/src/DOFMatrix.h index 6e42739123736cf0c18ee53c8ea273a5e8e8e42f..ff03a6a0a92958e23412394880f6d815bee61c3c 100644 --- a/AMDiS/src/DOFMatrix.h +++ b/AMDiS/src/DOFMatrix.h @@ -124,7 +124,8 @@ namespace AMDiS { } /// DOFMatrix does not need to be compressed before assembling, when using MTL4. - void compressDOFIndexed(int first, int last, std::vector<DegreeOfFreedom> &newDOF) {} + void compressDOFIndexed(int first, int last, std::vector<DegreeOfFreedom> &newDOF) + {} /// Implements DOFIndexedBase::freeDOFContent() virtual void freeDOFContent(int index); @@ -245,13 +246,7 @@ namespace AMDiS { * too small can induce perceivable overhead for compressed matrices. Thus, * it's better to choose a bit too large than too small. */ - void startInsertion(int nnz_per_row= 10) - { - if (inserter) - delete inserter, inserter= 0; - - inserter= new inserter_type(matrix, nnz_per_row); - } + void startInsertion(int nnz_per_row = 10); /** \brief * Finishes insertion. For compressed matrix types, this is where the diff --git a/AMDiS/src/ElInfo.cc b/AMDiS/src/ElInfo.cc index 85e2e9dd9b3e7ad89877f6895e48eec2c0d0bb20..3cf7e60e21e0ea47c038d62d0a40017375726dcf 100644 --- a/AMDiS/src/ElInfo.cc +++ b/AMDiS/src/ElInfo.cc @@ -139,7 +139,7 @@ namespace AMDiS { } void ElInfo::testFlag(const Flag& flags) const - { + { TEST_EXIT_DBG(fillFlag_.isSet(flags))("flag not set\n"); }