diff --git a/AMDiS/Makefile.in b/AMDiS/Makefile.in index e9c5bf1ac8d8fe42b6542b15014796a2e5651527..e7566807f6e3333475b563ca70bfe29bceffb31e 100644 --- a/AMDiS/Makefile.in +++ b/AMDiS/Makefile.in @@ -140,6 +140,7 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PETSC_DIR = @PETSC_DIR@ RANLIB = @RANLIB@ +SED = @SED@ SET_MAKE = @SET_MAKE@ SHELL = @SHELL@ STRIP = @STRIP@ diff --git a/AMDiS/aclocal.m4 b/AMDiS/aclocal.m4 index c6b83dae620f453eff109d72b180b3a18307599f..6cec4be818e153e5623e6e61d48999b94d619b09 100644 --- a/AMDiS/aclocal.m4 +++ b/AMDiS/aclocal.m4 @@ -1578,10 +1578,27 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '[#]line __oline__ "configure"' > conftest.$ac_ext + if AC_TRY_EVAL(ac_compile); then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -4288,6 +4305,9 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1) # Is the compiler the GNU C compiler? with_gcc=$_LT_AC_TAGVAR(GCC, $1) +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -4421,11 +4441,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1) +predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1) +postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -4437,7 +4457,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1) # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) +compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -4517,7 +4537,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1) # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -6353,6 +6373,7 @@ do done done done +IFS=$as_save_IFS lt_ac_max=0 lt_ac_count=0 # Add /usr/xpg4/bin/sed as it is typically found on Solaris @@ -6385,6 +6406,7 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do done ]) SED=$lt_cv_path_SED +AC_SUBST([SED]) AC_MSG_RESULT([$SED]) ]) diff --git a/AMDiS/bin/Makefile.in b/AMDiS/bin/Makefile.in index 3943373753ef27eba182a749dfc7549244ada09d..aeed7614996324bc3bc2ba8806c3cba605a1f3e6 100644 --- a/AMDiS/bin/Makefile.in +++ b/AMDiS/bin/Makefile.in @@ -399,6 +399,7 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PETSC_DIR = @PETSC_DIR@ RANLIB = @RANLIB@ +SED = @SED@ SET_MAKE = @SET_MAKE@ SHELL = @SHELL@ STRIP = @STRIP@ diff --git a/AMDiS/configure b/AMDiS/configure index 9b59a4e4cfd55106aa11ece45f8cf9721a454bfc..4196f21be3edc261705b5fe47eb1629a18261b96 100755 --- a/AMDiS/configure +++ b/AMDiS/configure @@ -462,7 +462,7 @@ ac_includes_default="\ # include <unistd.h> #endif" -ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS' +ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os SED EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS' ac_subst_files='' # Initialize some variables set by options. @@ -3946,6 +3946,7 @@ do done done done +IFS=$as_save_IFS lt_ac_max=0 lt_ac_count=0 # Add /usr/xpg4/bin/sed as it is typically found on Solaris @@ -3980,6 +3981,7 @@ done fi SED=$lt_cv_path_SED + echo "$as_me:$LINENO: result: $SED" >&5 echo "${ECHO_T}$SED" >&6 @@ -4420,7 +4422,7 @@ ia64-*-hpux*) ;; *-*-irix6*) # Find out which ABI we are using. - echo '#line 4423 "configure"' > conftest.$ac_ext + echo '#line 4425 "configure"' > conftest.$ac_ext if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 (eval $ac_compile) 2>&5 ac_status=$? @@ -5555,7 +5557,7 @@ fi # Provide some information about the compiler. -echo "$as_me:5558:" \ +echo "$as_me:5560:" \ "checking for Fortran 77 compiler version" >&5 ac_compiler=`set X $ac_compile; echo $2` { (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5 @@ -6618,11 +6620,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:6621: $lt_compile\"" >&5) + (eval echo "\"\$as_me:6623: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:6625: \$? = $ac_status" >&5 + echo "$as_me:6627: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -6886,11 +6888,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:6889: $lt_compile\"" >&5) + (eval echo "\"\$as_me:6891: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:6893: \$? = $ac_status" >&5 + echo "$as_me:6895: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -6990,11 +6992,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:6993: $lt_compile\"" >&5) + (eval echo "\"\$as_me:6995: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:6997: \$? = $ac_status" >&5 + echo "$as_me:6999: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -8455,10 +8457,31 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '#line 8464 "configure"' > conftest.$ac_ext + if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 + (eval $ac_compile) 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -9335,7 +9358,7 @@ else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext <<EOF -#line 9338 "configure" +#line 9361 "configure" #include "confdefs.h" #if HAVE_DLFCN_H @@ -9435,7 +9458,7 @@ else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext <<EOF -#line 9438 "configure" +#line 9461 "configure" #include "confdefs.h" #if HAVE_DLFCN_H @@ -9766,6 +9789,9 @@ CC=$lt_compiler # Is the compiler the GNU C compiler? with_gcc=$GCC +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -9899,11 +9925,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects +predep_objects=\`echo $lt_predep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects +postdep_objects=\`echo $lt_postdep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -9915,7 +9941,7 @@ postdeps=$lt_postdeps # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -9995,7 +10021,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -11775,11 +11801,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:11778: $lt_compile\"" >&5) + (eval echo "\"\$as_me:11804: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:11782: \$? = $ac_status" >&5 + echo "$as_me:11808: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -11879,11 +11905,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:11882: $lt_compile\"" >&5) + (eval echo "\"\$as_me:11908: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:11886: \$? = $ac_status" >&5 + echo "$as_me:11912: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -12411,10 +12437,31 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '#line 12444 "configure"' > conftest.$ac_ext + if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 + (eval $ac_compile) 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -12798,6 +12845,9 @@ CC=$lt_compiler_CXX # Is the compiler the GNU C compiler? with_gcc=$GCC_CXX +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -12931,11 +12981,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects_CXX +predep_objects=\`echo $lt_predep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects_CXX +postdep_objects=\`echo $lt_postdep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -12947,7 +12997,7 @@ postdeps=$lt_postdeps_CXX # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path_CXX +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -13027,7 +13077,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_CXX # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -13449,11 +13499,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:13452: $lt_compile\"" >&5) + (eval echo "\"\$as_me:13502: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:13456: \$? = $ac_status" >&5 + echo "$as_me:13506: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -13553,11 +13603,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:13556: $lt_compile\"" >&5) + (eval echo "\"\$as_me:13606: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:13560: \$? = $ac_status" >&5 + echo "$as_me:13610: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -14998,10 +15048,31 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '#line 15055 "configure"' > conftest.$ac_ext + if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 + (eval $ac_compile) 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -15385,6 +15456,9 @@ CC=$lt_compiler_F77 # Is the compiler the GNU C compiler? with_gcc=$GCC_F77 +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -15518,11 +15592,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects_F77 +predep_objects=\`echo $lt_predep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects_F77 +postdep_objects=\`echo $lt_postdep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -15534,7 +15608,7 @@ postdeps=$lt_postdeps_F77 # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path_F77 +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -15614,7 +15688,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_F77 # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -15756,11 +15830,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:15759: $lt_compile\"" >&5) + (eval echo "\"\$as_me:15833: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:15763: \$? = $ac_status" >&5 + echo "$as_me:15837: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -16024,11 +16098,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:16027: $lt_compile\"" >&5) + (eval echo "\"\$as_me:16101: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:16031: \$? = $ac_status" >&5 + echo "$as_me:16105: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -16128,11 +16202,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:16131: $lt_compile\"" >&5) + (eval echo "\"\$as_me:16205: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:16135: \$? = $ac_status" >&5 + echo "$as_me:16209: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -17593,10 +17667,31 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '#line 17674 "configure"' > conftest.$ac_ext + if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 + (eval $ac_compile) 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -17980,6 +18075,9 @@ CC=$lt_compiler_GCJ # Is the compiler the GNU C compiler? with_gcc=$GCC_GCJ +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -18113,11 +18211,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects_GCJ +predep_objects=\`echo $lt_predep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects_GCJ +postdep_objects=\`echo $lt_postdep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -18129,7 +18227,7 @@ postdeps=$lt_postdeps_GCJ # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path_GCJ +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -18209,7 +18307,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_GCJ # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -18461,6 +18559,9 @@ CC=$lt_compiler_RC # Is the compiler the GNU C compiler? with_gcc=$GCC_RC +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -18594,11 +18695,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects_RC +predep_objects=\`echo $lt_predep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects_RC +postdep_objects=\`echo $lt_postdep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -18610,7 +18711,7 @@ postdeps=$lt_postdeps_RC # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path_RC +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -18690,7 +18791,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_RC # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -19614,6 +19715,7 @@ s,@host@,$host,;t t s,@host_cpu@,$host_cpu,;t t s,@host_vendor@,$host_vendor,;t t s,@host_os@,$host_os,;t t +s,@SED@,$SED,;t t s,@EGREP@,$EGREP,;t t s,@LN_S@,$LN_S,;t t s,@ECHO@,$ECHO,;t t diff --git a/AMDiS/libtool b/AMDiS/libtool index 486eabd3eefb59bce7cb3fc38a32f6c54ef0e385..e96f67065e881c5fbc2155783211a810082e9175 100755 --- a/AMDiS/libtool +++ b/AMDiS/libtool @@ -30,10 +30,10 @@ # the same distribution terms that you use for the rest of that program. # A sed program that does not truncate output. -SED="/usr/bin/sed" +SED="/bin/sed" # Sed that helps us avoid accidentally triggering echo(1) options like -n. -Xsed="/usr/bin/sed -e 1s/^X//" +Xsed="/bin/sed -e 1s/^X//" # The HP-UX ksh and POSIX shell print the target directory to stdout # if CDPATH is set. @@ -44,7 +44,7 @@ available_tags=" CXX F77" # ### BEGIN LIBTOOL CONFIG -# Libtool was configured on host deimos103: +# Libtool was configured on host NWRW15: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -66,12 +66,12 @@ fast_install=yes # The host system. host_alias= -host=x86_64-unknown-linux-gnu +host=i686-pc-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=x86_64-unknown-linux-gnu +build=i686-pc-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -82,22 +82,25 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +LTCC="gcc" # LTCC compiler flags. LTCFLAGS="-g -O2" # A language-specific compiler. -CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +CC="gcc" # Is the compiler the GNU C compiler? with_gcc=yes +gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'` +gcc_ver=`gcc -dumpversion` + # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" +LD="/usr/bin/ld" # Whether we need hard or soft links. LN_S="ln -s" @@ -171,7 +174,7 @@ dlopen_self=unknown dlopen_self_static=unknown # Compiler flag to prevent dynamic linking. -link_static_flag="" +link_static_flag="-static" # Compiler flag to turn off builtin functions. no_builtin_flag=" -fno-builtin" @@ -229,11 +232,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects="" +predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects="" +postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place before the objects being linked to create a # shared library. @@ -245,7 +248,7 @@ postdeps="" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path="" +compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -325,10 +328,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/" +sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" @@ -6760,7 +6763,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac` # End: # ### BEGIN LIBTOOL TAG CONFIG: CXX -# Libtool was configured on host deimos103: +# Libtool was configured on host NWRW15: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -6782,12 +6785,12 @@ fast_install=yes # The host system. host_alias= -host=x86_64-unknown-linux-gnu +host=i686-pc-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=x86_64-unknown-linux-gnu +build=i686-pc-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -6798,22 +6801,25 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +LTCC="gcc" # LTCC compiler flags. LTCFLAGS="-g -O2" # A language-specific compiler. -CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC" +CC="g++" # Is the compiler the GNU C compiler? with_gcc=yes +gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'` +gcc_ver=`gcc -dumpversion` + # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" +LD="/usr/bin/ld" # Whether we need hard or soft links. LN_S="ln -s" @@ -6887,7 +6893,7 @@ dlopen_self=unknown dlopen_self_static=unknown # Compiler flag to prevent dynamic linking. -link_static_flag="" +link_static_flag="-static" # Compiler flag to turn off builtin functions. no_builtin_flag=" -fno-builtin" @@ -6942,11 +6948,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o" +predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o" +postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place before the objects being linked to create a # shared library. @@ -6954,11 +6960,11 @@ predeps="" # Dependencies to place after the objects being linked to create a # shared library. -postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s" +postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." +compiler_lib_search_path=`echo "-L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -7038,10 +7044,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/" +sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" @@ -7065,7 +7071,7 @@ include_expsyms="" # ### BEGIN LIBTOOL TAG CONFIG: F77 -# Libtool was configured on host deimos103: +# Libtool was configured on host NWRW15: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -7087,12 +7093,12 @@ fast_install=yes # The host system. host_alias= -host=x86_64-unknown-linux-gnu +host=i686-pc-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=x86_64-unknown-linux-gnu +build=i686-pc-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -7103,7 +7109,7 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +LTCC="gcc" # LTCC compiler flags. LTCFLAGS="-g -O2" @@ -7112,13 +7118,16 @@ LTCFLAGS="-g -O2" CC="g77" # Is the compiler the GNU C compiler? -with_gcc= +with_gcc=yes + +gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'` +gcc_ver=`gcc -dumpversion` # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" +LD="/usr/bin/ld" # Whether we need hard or soft links. LN_S="ln -s" @@ -7250,11 +7259,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects="" +predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects="" +postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place before the objects being linked to create a # shared library. @@ -7266,7 +7275,7 @@ postdeps="" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path="" +compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -7346,10 +7355,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=" /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/" +sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" diff --git a/AMDiS/src/CoarseningManager3d.cc b/AMDiS/src/CoarseningManager3d.cc index 530387d695665f9ced9dc9c51f1d2efbece76822..f16badb0a8c527aad6cf5de971fb0f9ba0c73949 100644 --- a/AMDiS/src/CoarseningManager3d.cc +++ b/AMDiS/src/CoarseningManager3d.cc @@ -60,7 +60,7 @@ namespace AMDiS { n_neigh = 1; coarsenList->setOppVertex(0,0,0); - coarsenList->setElType(0, (dynamic_cast<ElInfo3d*>( el_info)->getType())); + coarsenList->setElType(0, el_info->getType()); bound = false; if (getCoarsenPatch(elinfo, edge, 0, coarsenList, &n_neigh)) { getCoarsenPatch(elinfo, edge, 1, coarsenList, &n_neigh); @@ -220,9 +220,9 @@ namespace AMDiS { {0,2}, {0,1}}; - el = dynamic_cast<Tetrahedron*>(const_cast<Element*>( el_info->getElement())); - - if ((neigh = dynamic_cast<Tetrahedron*>(const_cast<Element*>( el_info->getNeighbour(3-dir)))) == NULL) + el = dynamic_cast<Tetrahedron*>(const_cast<Element*>(el_info->getElement())); + neigh = dynamic_cast<Tetrahedron*>(const_cast<Element*>(el_info->getNeighbour(3 - dir))); + if (neigh == NULL) return true; opp_v = el_info->getOppVertex(3-dir); @@ -237,7 +237,7 @@ namespace AMDiS { /****************************************************************************/ coarsenList->setOppVertex(*n_neigh, 0, opp_v); coarsenList->setElement(*n_neigh, neigh); - coarsenList->setElType(*n_neigh, (dynamic_cast<ElInfo3d*>( neigh_info))->getType()); + coarsenList->setElType(*n_neigh, neigh_info->getType()); int n_vertices = mesh->getGeo(VERTEX); @@ -273,7 +273,8 @@ namespace AMDiS { ++*n_neigh; opp_v = neigh_info->getOppVertex(i); - if ((neigh = dynamic_cast<Tetrahedron*>(const_cast<Element*>( neigh_info->getNeighbour(i))))) { + neigh = dynamic_cast<Tetrahedron*>(const_cast<Element*>(neigh_info->getNeighbour(i))); + if (neigh) { neigh_info = stack->traverseNeighbour3d(neigh_info, i); TEST_EXIT_DBG(neigh == neigh_info->getElement()) ("neigh %d and neigh_info->el %d are not identical\n", @@ -284,9 +285,10 @@ namespace AMDiS { /****************************************************************************/ coarsenList->setOppVertex(*n_neigh, 0, opp_v); coarsenList->setElement(*n_neigh, neigh); - coarsenList->setElType(*n_neigh, (dynamic_cast<ElInfo3d*>( neigh_info))->getType()); - } else + coarsenList->setElType(*n_neigh, neigh_info->getType()); + } else { break; + } } if (neigh == el) diff --git a/AMDiS/src/DataCollector.cc b/AMDiS/src/DataCollector.cc index 4e02354294b7ccd8ec54f728631194ae76d07c69..72e965f6cacfa37055a8003433a10c7fa38f3ad5 100644 --- a/AMDiS/src/DataCollector.cc +++ b/AMDiS/src/DataCollector.cc @@ -266,7 +266,7 @@ namespace AMDiS { } if (dim == 3) - elementInfo.type = (dynamic_cast<ElInfo3d*>(elInfo)->getType()); + elementInfo.type = elInfo->getType(); // remember element info elements.push_back(elementInfo); diff --git a/AMDiS/src/ElInfo.cc b/AMDiS/src/ElInfo.cc index 7e7e529f3d2500698a5f836c7ecba8ee3c9e4821..6a7680a152b861d074a12c816c0eeaef7c3a5b3a 100644 --- a/AMDiS/src/ElInfo.cc +++ b/AMDiS/src/ElInfo.cc @@ -20,13 +20,14 @@ namespace AMDiS { parent_(NULL), macroElement_(NULL), level(0), + elType(0), iChild(0), coord_(mesh_->getDim(), NO_INIT), boundary_(mesh_->getDim(), DEFAULT_VALUE, INTERIOR), projection_(mesh_->getDim(), NO_INIT), oppCoord_(mesh_->getDim(), NO_INIT), neighbour_(mesh_->getDim(), NO_INIT), - neighbourCoord_(mesh_->getDim(), NO_INIT), + neighbourCoord(mesh_->getDim(), NO_INIT), oppVertex(mesh_->getDim(), NO_INIT), grdLambda(mesh_->getDim(), NO_INIT), refinementPath(0), @@ -34,8 +35,8 @@ namespace AMDiS { { projection_.set(NULL); - for (int i = 0; i < neighbourCoord_.getSize(); i++) - neighbourCoord_[i].init(mesh_->getDim()); + for (int i = 0; i < neighbourCoord.getSize(); i++) + neighbourCoord[i].init(mesh_->getDim()); dimOfWorld = Global::getGeo(WORLD); } diff --git a/AMDiS/src/ElInfo.h b/AMDiS/src/ElInfo.h index fe265d6e34cc382207eee3e0a3c3a120d3a55d37..171ba40f0a4644fb21d954984f3fa59a6f9f5db3 100644 --- a/AMDiS/src/ElInfo.h +++ b/AMDiS/src/ElInfo.h @@ -77,7 +77,7 @@ namespace AMDiS { boundary_ = rhs.boundary_; oppCoord_ = rhs.oppCoord_; neighbour_ = rhs.neighbour_; - neighbourCoord_ = rhs.neighbourCoord_; + neighbourCoord = rhs.neighbourCoord; oppVertex = rhs.oppVertex; return *this; } @@ -186,10 +186,10 @@ namespace AMDiS { return neighbour_[i]; } - /// Get ElInfo's \ref neighbourCoord_[i] + /// Get ElInfo's \ref neighbourCoord[i] inline FixVec<WorldVector<double>, VERTEX> getNeighbourCoord(int i) const { - return neighbourCoord_[i]; + return neighbourCoord[i]; } /// Get ElInfo's \ref oppVertex[i] @@ -323,6 +323,12 @@ namespace AMDiS { refinementPathLength = length; } + /// Set ElInfo's \ref elType. + inline void setType(int t) + { + elType = t; + } + /** \} */ @@ -408,6 +414,12 @@ namespace AMDiS { return(0.0); } + /// Get ElInfo's \ref elType. + inline int getType() const + { + return elType; + } + protected: /// Pointer to the current mesh Mesh *mesh_; @@ -437,6 +449,13 @@ namespace AMDiS { */ unsigned char level; + /** \brief + * Elements type index. This is used only for 3d, where type can be either 0, 1 or + * 2. In all other cases type is not used and the variable is set to 0. + * In 3d, it is filled automatically by the traversal routines. + */ + int elType; + /** \brief * This ElInfo is the iChild-th child of the parent element. */ @@ -475,10 +494,10 @@ namespace AMDiS { FixVec<Element*, NEIGH> neighbour_; /** \brief - * neighbourCoord_[i][j] are the coordinate of the j-th vertex of the i-th + * neighbourCoord[i][j] are the coordinate of the j-th vertex of the i-th * neighbour element with the common edge/face. */ - FixVec<FixVec<WorldVector<double>, VERTEX>, NEIGH> neighbourCoord_; + FixVec<FixVec<WorldVector<double>, VERTEX>, NEIGH> neighbourCoord; /** \brief * oppVertex[i] is undefined if neighbour_[i] is a pointer to NULL. diff --git a/AMDiS/src/ElInfo2d.cc b/AMDiS/src/ElInfo2d.cc index 11815d94fde0644957bd05551e73c6bd3641eec1..7f8f209f7b77f842202340a0b9e422768c5bf522 100644 --- a/AMDiS/src/ElInfo2d.cc +++ b/AMDiS/src/ElInfo2d.cc @@ -146,45 +146,45 @@ namespace AMDiS { switch (edgeNo) { case 1: - neighbourCoord_[i][0] = macroNeighbour->coord[2]; - neighbourCoord_[i][1] = macroNeighbour->coord[0]; + neighbourCoord[i][0] = macroNeighbour->coord[2]; + neighbourCoord[i][1] = macroNeighbour->coord[0]; break; case 0: - neighbourCoord_[i][0] = macroNeighbour->coord[1]; - neighbourCoord_[i][1] = macroNeighbour->coord[2]; + neighbourCoord[i][0] = macroNeighbour->coord[1]; + neighbourCoord[i][1] = macroNeighbour->coord[2]; break; default: ERROR_EXIT("Should not happen!\n"); } - neighbourCoord_[i][2] = oppCoord_[i]; + neighbourCoord[i][2] = oppCoord_[i]; break; case 1: // The commonedge is the edge 1 of this element. switch (edgeNo) { case 0: - neighbourCoord_[i][0] = macroNeighbour->coord[1]; - neighbourCoord_[i][1] = macroNeighbour->coord[2]; + neighbourCoord[i][0] = macroNeighbour->coord[1]; + neighbourCoord[i][1] = macroNeighbour->coord[2]; break; case 1: - neighbourCoord_[i][0] = macroNeighbour->coord[2]; - neighbourCoord_[i][1] = macroNeighbour->coord[0]; + neighbourCoord[i][0] = macroNeighbour->coord[2]; + neighbourCoord[i][1] = macroNeighbour->coord[0]; break; default: ERROR_EXIT("Should not happen!\n"); } - neighbourCoord_[i][2] = oppCoord_[i]; + neighbourCoord[i][2] = oppCoord_[i]; break; case 2: if (*(macroNeighbour->getElement()->getDOF(2)) == *(element_->getDOF(0))) { - neighbourCoord_[i][0] = macroNeighbour->coord[2]; - neighbourCoord_[i][1] = macroNeighbour->coord[1]; + neighbourCoord[i][0] = macroNeighbour->coord[2]; + neighbourCoord[i][1] = macroNeighbour->coord[1]; } else if (*(macroNeighbour->getElement()->getDOF(2)) == *(element_->getDOF(1))) { - neighbourCoord_[i][0] = macroNeighbour->coord[0]; - neighbourCoord_[i][1] = macroNeighbour->coord[2]; + neighbourCoord[i][0] = macroNeighbour->coord[0]; + neighbourCoord[i][1] = macroNeighbour->coord[2]; } else { ERROR_EXIT("Should not happen!\n"); } @@ -226,7 +226,7 @@ namespace AMDiS { if (fill_opp_coords) { oppCoord_[i] = macroNeighbour->coord[edgeNo]; - neighbourCoord_[i] = macroNeighbour->coord; + neighbourCoord[i] = macroNeighbour->coord; } } } else { @@ -302,7 +302,7 @@ namespace AMDiS { if (neighbour_[2] && fill_opp_coords) { oppCoord_[2] = elInfoOld->oppCoord_[1]; - neighbourCoord_[2] = elInfoOld->neighbourCoord_[1]; + neighbourCoord[2] = elInfoOld->neighbourCoord[1]; } @@ -324,9 +324,9 @@ namespace AMDiS { elInfoOld->coord_[2]); } - neighbourCoord_[1][0] = coord_[0]; - neighbourCoord_[1][1] = coord_[2]; - neighbourCoord_[1][2] = oppCoord_[1]; + neighbourCoord[1][0] = coord_[0]; + neighbourCoord[1][1] = coord_[2]; + neighbourCoord[1][2] = oppCoord_[1]; } } else { neighbour_[1] = elem->getSecondChild(); @@ -335,9 +335,9 @@ namespace AMDiS { if (fill_opp_coords) { oppCoord_[1] = elInfoOld->coord_[1]; - neighbourCoord_[1][0] = elInfoOld->coord_[1]; - neighbourCoord_[1][1] = elInfoOld->coord_[2]; - neighbourCoord_[1][2] = coord_[2]; + neighbourCoord[1][0] = elInfoOld->coord_[1]; + neighbourCoord[1][1] = elInfoOld->coord_[2]; + neighbourCoord[1][2] = coord_[2]; } } @@ -360,14 +360,14 @@ namespace AMDiS { if (nb->isNewCoordSet()) { oppCoord_[0] = *(nb->getNewCoord()); } else { - oppCoord_[0].setMidpoint(elInfoOld->neighbourCoord_[2][1], - elInfoOld->neighbourCoord_[2][2]); + oppCoord_[0].setMidpoint(elInfoOld->neighbourCoord[2][1], + elInfoOld->neighbourCoord[2][2]); } - neighbourCoord_[0][0].setMidpoint(elInfoOld->neighbourCoord_[2][0], - elInfoOld->neighbourCoord_[2][1]); - neighbourCoord_[0][1] = elInfoOld->neighbourCoord_[2][1]; - neighbourCoord_[0][2] = oppCoord_[0]; + neighbourCoord[0][0].setMidpoint(elInfoOld->neighbourCoord[2][0], + elInfoOld->neighbourCoord[2][1]); + neighbourCoord[0][1] = elInfoOld->neighbourCoord[2][1]; + neighbourCoord[0][2] = oppCoord_[0]; } nb = nb->getFirstChild(); @@ -377,10 +377,10 @@ namespace AMDiS { if (fill_opp_coords) { oppCoord_[0] = elInfoOld->oppCoord_[2]; - neighbourCoord_[0][0] = elInfoOld->neighbourCoord_[2][0]; - neighbourCoord_[0][1] = elInfoOld->neighbourCoord_[2][2]; - neighbourCoord_[0][2].setMidpoint(elInfoOld->neighbourCoord_[2][0], - elInfoOld->neighbourCoord_[2][1]); + neighbourCoord[0][0] = elInfoOld->neighbourCoord[2][0]; + neighbourCoord[0][1] = elInfoOld->neighbourCoord[2][2]; + neighbourCoord[0][2].setMidpoint(elInfoOld->neighbourCoord[2][0], + elInfoOld->neighbourCoord[2][1]); } } } @@ -395,7 +395,7 @@ namespace AMDiS { if (neighbour_[2] && fill_opp_coords) { oppCoord_[2] = elInfoOld->oppCoord_[0]; - neighbourCoord_[2] = elInfoOld->neighbourCoord_[0]; + neighbourCoord[2] = elInfoOld->neighbourCoord[0]; } @@ -414,9 +414,9 @@ namespace AMDiS { elInfoOld->coord_[2]); } - neighbourCoord_[0][0] = coord_[2]; - neighbourCoord_[0][1] = coord_[1]; - neighbourCoord_[0][2] = oppCoord_[0]; + neighbourCoord[0][0] = coord_[2]; + neighbourCoord[0][1] = coord_[1]; + neighbourCoord[0][2] = oppCoord_[0]; } } else { neighbour_[0] = elem->getFirstChild(); @@ -425,9 +425,9 @@ namespace AMDiS { if (fill_opp_coords) { oppCoord_[0] = elInfoOld->coord_[0]; - neighbourCoord_[0][0] = elInfoOld->coord_[2]; - neighbourCoord_[0][1] = elInfoOld->coord_[0]; - neighbourCoord_[0][2] = coord_[2]; + neighbourCoord[0][0] = elInfoOld->coord_[2]; + neighbourCoord[0][1] = elInfoOld->coord_[0]; + neighbourCoord[0][2] = coord_[2]; } } @@ -446,14 +446,14 @@ namespace AMDiS { if (nb->isNewCoordSet()) { oppCoord_[1] = *(nb->getNewCoord()); } else { - oppCoord_[1].setMidpoint(elInfoOld->neighbourCoord_[2][0], - elInfoOld->neighbourCoord_[2][2]); + oppCoord_[1].setMidpoint(elInfoOld->neighbourCoord[2][0], + elInfoOld->neighbourCoord[2][2]); } - neighbourCoord_[1][0] = elInfoOld->neighbourCoord_[2][0]; - neighbourCoord_[1][1].setMidpoint(elInfoOld->neighbourCoord_[2][0], - elInfoOld->neighbourCoord_[2][1]); - neighbourCoord_[1][2] = oppCoord_[1]; + neighbourCoord[1][0] = elInfoOld->neighbourCoord[2][0]; + neighbourCoord[1][1].setMidpoint(elInfoOld->neighbourCoord[2][0], + elInfoOld->neighbourCoord[2][1]); + neighbourCoord[1][2] = oppCoord_[1]; } nb = nb->getSecondChild(); @@ -463,10 +463,10 @@ namespace AMDiS { if (fill_opp_coords) { oppCoord_[1] = elInfoOld->oppCoord_[2]; - neighbourCoord_[1][0] = elInfoOld->neighbourCoord_[2][2]; - neighbourCoord_[1][1] = elInfoOld->neighbourCoord_[2][0]; - neighbourCoord_[1][2].setMidpoint(elInfoOld->neighbourCoord_[2][0], - elInfoOld->neighbourCoord_[2][1]); + neighbourCoord[1][0] = elInfoOld->neighbourCoord[2][2]; + neighbourCoord[1][1] = elInfoOld->neighbourCoord[2][0]; + neighbourCoord[1][2].setMidpoint(elInfoOld->neighbourCoord[2][0], + elInfoOld->neighbourCoord[2][1]); } } } diff --git a/AMDiS/src/ElInfo3d.cc b/AMDiS/src/ElInfo3d.cc index 43a00c6dc0665006025990e5ca5616698fb05a42..948f775b0b94b5ba2b506c181cb3f54e8ba87e9a 100644 --- a/AMDiS/src/ElInfo3d.cc +++ b/AMDiS/src/ElInfo3d.cc @@ -25,7 +25,7 @@ namespace AMDiS { element_ = const_cast<Element*>( mel->getElement()); parent_ = NULL; level = 0; - el_type = const_cast<MacroElement*>(mel)->getElType(); + elType = const_cast<MacroElement*>(mel)->getElType(); int vertices = mesh_->getGeo(VERTEX); @@ -369,7 +369,7 @@ namespace AMDiS { level = elInfoOld->level + 1; iChild = ichild; int el_type_local = (dynamic_cast<const ElInfo3d*>(elInfoOld))->getType(); - el_type = (el_type_local + 1) % 3; + elType = (el_type_local + 1) % 3; TEST_EXIT_DBG(element_)("missing child %d?\n", ichild); diff --git a/AMDiS/src/ElInfo3d.h b/AMDiS/src/ElInfo3d.h index 1e219b789d021f8286674f188562ad58ad6c704f..50ae715420ed2c6b00a72dadbac174aec9fabdca 100644 --- a/AMDiS/src/ElInfo3d.h +++ b/AMDiS/src/ElInfo3d.h @@ -45,7 +45,7 @@ namespace AMDiS { ElInfo3d& operator=(const ElInfo3d& rhs) { ElInfo::operator=(rhs); - el_type = rhs.el_type; + elType = rhs.elType; orientation = rhs.orientation; return *this; } @@ -68,24 +68,12 @@ namespace AMDiS { /// update ElInfo after refinement (of some neighbours). Only in 3d! void update(); - /// get ElInfo's \ref el_type - inline unsigned char getType() const - { - return el_type; - } - /// get ElInfo's \ref orientation inline signed char getOrientation() const { return orientation; } - /// set ElInfo's \ref el_type to t - inline void setType(unsigned char t) - { - el_type = t; - } - /// set ElInfo's \ref orientation to o inline void setOrientation(signed char o) { @@ -93,9 +81,6 @@ namespace AMDiS { } protected: - /// \ref el 's type. Is Filled automatically by the traversal routines. - unsigned char el_type; - /** \brief * +/- 1: sign of the determinant of the transformation to the reference * element with vertices (0,0,0), (1,1,1), (1,1,0), (1,0,0). diff --git a/AMDiS/src/MacroReader.cc b/AMDiS/src/MacroReader.cc index 8aedf92eef3b13b1aef6e95d92557320bbb973f1..9294f5bd334caace95a38b303f408acdc68e0809 100644 --- a/AMDiS/src/MacroReader.cc +++ b/AMDiS/src/MacroReader.cc @@ -995,15 +995,13 @@ namespace AMDiS { std::cout << " coords of element = "; for (int l = 0; l <= dim; l++) { std::cout << mesh->getMacroElement(i)->getCoord(l); - if (l < dim) { - std::cout << " / "; - } + if (l < dim) + std::cout << " / "; } std::cout << std::endl; std::cout << " dofs = "; - for (int l = 0; l < dim; l++) { - std::cout << *(dof[l]) << " "; - } + for (int l = 0; l < dim; l++) + std::cout << *(dof[l]) << " "; std::cout << std::endl; ERROR_EXIT("\n"); diff --git a/AMDiS/src/RefinementManager3d.cc b/AMDiS/src/RefinementManager3d.cc index e2cfa322cf9ed75374af8a887631920757b59572..487ce5952644f2f12da00bcfebe4c4e4932d3c05 100644 --- a/AMDiS/src/RefinementManager3d.cc +++ b/AMDiS/src/RefinementManager3d.cc @@ -21,7 +21,9 @@ namespace AMDiS { DegreeOfFreedom* dof[3], DegreeOfFreedom *edge[2]) { - Tetrahedron *el = dynamic_cast<Tetrahedron*>(const_cast<Element*>( ref_list->getElement(index))), *child[2]; + Tetrahedron *el = + dynamic_cast<Tetrahedron*>(const_cast<Element*>(ref_list->getElement(index))); + Tetrahedron *child[2]; int i, node; int el_type = ref_list->getType(index); @@ -50,9 +52,9 @@ namespace AMDiS { for (i = 0; i < n_vertices-1; i++) { child[0]-> - setDOF(i, const_cast<int*>( el->getDOF(Tetrahedron::childVertex[el_type][0][i]))); + setDOF(i, const_cast<int*>(el->getDOF(Tetrahedron::childVertex[el_type][0][i]))); child[1]-> - setDOF(i, const_cast<int*>( el->getDOF(Tetrahedron::childVertex[el_type][1][i]))); + setDOF(i, const_cast<int*>(el->getDOF(Tetrahedron::childVertex[el_type][1][i]))); } /****************************************************************************/ /* there is one more leaf element and two more hierachical elements */ @@ -75,33 +77,33 @@ namespace AMDiS { child[0]-> setDOF(node, - const_cast<int*>( el->getDOF(node+Tetrahedron::childEdge[el_type][0][0]))); + const_cast<int*>(el->getDOF(node+Tetrahedron::childEdge[el_type][0][0]))); child[1]-> setDOF(node, - const_cast<int*>( el->getDOF(node+Tetrahedron::childEdge[el_type][1][0]))); + const_cast<int*>(el->getDOF(node+Tetrahedron::childEdge[el_type][1][0]))); child[0]-> - setDOF(node+1, - const_cast<int*>( el->getDOF(node+Tetrahedron::childEdge[el_type][0][1]))); + setDOF(node + 1, + const_cast<int*>(el->getDOF(node+Tetrahedron::childEdge[el_type][0][1]))); child[1]-> - setDOF(node+1, - const_cast<int*>( el->getDOF(node+Tetrahedron::childEdge[el_type][1][1]))); + setDOF(node + 1, + const_cast<int*>(el->getDOF(node+Tetrahedron::childEdge[el_type][1][1]))); child[0]-> - setDOF(node+3, - const_cast<int*>( el->getDOF(node+Tetrahedron::childEdge[el_type][0][3]))); + setDOF(node + 3, + const_cast<int*>(el->getDOF(node+Tetrahedron::childEdge[el_type][0][3]))); child[1]-> - setDOF(node+3, - const_cast<int*>( el->getDOF(node+Tetrahedron::childEdge[el_type][1][3]))); + setDOF(node + 3, + const_cast<int*>(el->getDOF(node+Tetrahedron::childEdge[el_type][1][3]))); /****************************************************************************/ /* adjust pointers to the dof's in the refinement edge */ /****************************************************************************/ if (el->getDOF(0) == edge[0]) { - child[0]->setDOF(node+2, dof[1]); - child[1]->setDOF(node+2, dof[2]); + child[0]->setDOF(node + 2, dof[1]); + child[1]->setDOF(node + 2, dof[2]); } else { - child[0]->setDOF(node+2, dof[2]); - child[1]->setDOF(node+2, dof[1]); + child[0]->setDOF(node + 2, dof[2]); + child[1]->setDOF(node + 2, dof[1]); } } @@ -139,18 +141,19 @@ namespace AMDiS { { FUNCNAME("RefinementManager3d::fillPatchConnectivity"); Element *el = ref_list->getElement(index), *neigh; - int dir, el_type = ref_list->getType(index), n_type = 0; - int adjc, i, j, i_neigh, j_neigh; - int node0, node1, opp_v = 0; + int el_type = ref_list->getType(index); + int n_type = 0; + int dir, adjc, i, j, i_neigh, j_neigh; + int node0, node1, opp_v = 0; for (dir = 0; dir < 2; dir++) { neigh = ref_list->getNeighbourElement(index, dir); if (neigh) { - n_type = ref_list->getType( ref_list->getNeighbourNr(index, dir) ); + n_type = ref_list->getType(ref_list->getNeighbourNr(index, dir)); opp_v = ref_list->getOppVertex(index, dir); } - if (!neigh || neigh->isLeaf()) { + if (!neigh || neigh->isLeaf()) { /****************************************************************************/ /* get new dof's in the midedge of the face of el and for the two midpoints*/ @@ -235,23 +238,19 @@ namespace AMDiS { int RefinementManager3d::newCoordsFct(ElInfo *el_info) { Element *el = el_info->getElement(); - int i, j, n_neigh; DegreeOfFreedom *edge[2]; - ElInfo *elinfo = el_info; - + ElInfo *elinfo = el_info; int dow = Global::getGeo(WORLD); - Projection *projector = el_info->getProjection(0); - if (!projector || projector->getType() != VOLUME_PROJECTION) { - projector = el_info->getProjection(4); - } + if (!projector || projector->getType() != VOLUME_PROJECTION) + projector = el_info->getProjection(4); if (el->getFirstChild() && projector && (!el->isNewCoordSet())) { WorldVector<double> *new_coord = new WorldVector<double>; - for (j = 0; j < dow; j++) - (*new_coord)[j] = (el_info->getCoord(0)[j] + el_info->getCoord(1)[j])*0.5; + for (int j = 0; j < dow; j++) + (*new_coord)[j] = (el_info->getCoord(0)[j] + el_info->getCoord(1)[j]) * 0.5; projector->project(*new_coord); @@ -261,11 +260,11 @@ namespace AMDiS { /* get the refinement patch */ /****************************************************************************/ refList->setElement(0, el); - refList->setElType(0, dynamic_cast<ElInfo3d*>(el_info)->getType()); - n_neigh = 1; + refList->setElType(0, el_info->getType()); + int n_neigh = 1; - for (i = 0; i < 2; i++) - edge[i] = const_cast<int*>( el_info->getElement()->getDOF(i)); + for (int i = 0; i < 2; i++) + edge[i] = const_cast<int*>(el_info->getElement()->getDOF(i)); if (getRefinePatch(&elinfo, edge, 0, refList, &n_neigh)) { /****************************************************************************/ @@ -274,7 +273,7 @@ namespace AMDiS { getRefinePatch(&elinfo, edge, 1, refList, &n_neigh); } - for (i = 1; i < n_neigh; i++) { /* start with 1, as list[0]=el */ + for (int i = 1; i < n_neigh; i++) { /* start with 1, as list[0]=el */ TEST(!refList->getElement(i)->isNewCoordSet()) ("non-nil new_coord in el %d ref_list[%d] el %d (n_neigh=%d)\n", el->getIndex(), i, refList->getElement(i)->getIndex(), n_neigh); @@ -392,22 +391,22 @@ namespace AMDiS { RCNeighbourList* refineList, int *n_neigh) { - FUNCNAME("RefinementManager3d::getRefinePatch"); - ElInfo *neigh_info; + FUNCNAME("RefinementManager3d::getRefinePatch()"); - Tetrahedron *el, *neigh; - int i, j, k, opp_v = 0; - int edge_no, neigh_el_type; + int i, j, k; - el = dynamic_cast<Tetrahedron*>(const_cast<Element*>( (*el_info)->getElement())); - - if ((*el_info)->getNeighbour(3-dir) == NULL) {return(1);} + Tetrahedron *el = + dynamic_cast<Tetrahedron*>(const_cast<Element*>((*el_info)->getElement())); + + if ((*el_info)->getNeighbour(3 - dir) == NULL) + return 1; - opp_v = (*el_info)->getOppVertex(3-dir); - neigh_info = stack->traverseNeighbour3d((*el_info), 3-dir); - neigh_el_type = dynamic_cast<ElInfo3d*>(neigh_info)->getType(); + int opp_v = (*el_info)->getOppVertex(3-dir); + ElInfo *neigh_info = stack->traverseNeighbour3d((*el_info), 3 - dir); + int neigh_el_type = neigh_info->getType(); - neigh = dynamic_cast<Tetrahedron*>(const_cast<Element*>( neigh_info->getElement())); + Tetrahedron *neigh = + dynamic_cast<Tetrahedron*>(const_cast<Element*>( neigh_info->getElement())); int vertices = mesh->getGeo(VERTEX); @@ -474,7 +473,8 @@ namespace AMDiS { edge[0][0], edge[1][0], neigh->getIndex(), neigh->getDOF(0,0), neigh->getDOF(1,0), neigh->getDOF(2,0), neigh->getDOF(3,0)); - if ((edge_no = Tetrahedron::edgeOfDOFs[j][k])) { + int edge_no = Tetrahedron::edgeOfDOFs[j][k]; + if (edge_no) { /****************************************************************************/ /* neigh has not a compatible refinement edge */ /****************************************************************************/ @@ -487,7 +487,7 @@ namespace AMDiS { /****************************************************************************/ neigh_info = stack->traverseNext(neigh_info); - neigh_el_type = dynamic_cast<ElInfo3d*>(neigh_info)->getType(); + neigh_el_type = neigh_info->getType(); switch (edge_no) { case 1: @@ -498,7 +498,7 @@ namespace AMDiS { break; case 3: neigh_info = stack->traverseNext(neigh_info); - neigh_el_type = dynamic_cast<ElInfo3d*>(neigh_info)->getType(); + neigh_el_type = neigh_info->getType(); if (neigh_el_type != 1) opp_v = opp_v == 0 ? 3 : 2; else @@ -506,7 +506,7 @@ namespace AMDiS { break; case 4: neigh_info = stack->traverseNext(neigh_info); - neigh_el_type = dynamic_cast<ElInfo3d*>(neigh_info)->getType(); + neigh_el_type = neigh_info->getType(); if (neigh_el_type != 1) opp_v = opp_v == 0 ? 3 : 1; else @@ -515,12 +515,13 @@ namespace AMDiS { case 5: if (neigh_el_type != 1) { neigh_info = stack->traverseNext(neigh_info); - neigh_el_type = (dynamic_cast<ElInfo3d*>(neigh_info))->getType(); + neigh_el_type = neigh_info->getType(); } opp_v = 3; break; } - neigh = dynamic_cast<Tetrahedron*>(const_cast<Element*>( neigh_info->getElement())); + neigh = + dynamic_cast<Tetrahedron*>(const_cast<Element*>(neigh_info->getElement())); } else { /****************************************************************************/ /* neigh is compatible devisible; put neigh to the list of patch elements; */ @@ -549,8 +550,9 @@ namespace AMDiS { if (neigh_info->getNeighbour(i)) { opp_v = neigh_info->getOppVertex(i); neigh_info = stack->traverseNeighbour3d(neigh_info, i); - neigh_el_type = (dynamic_cast<ElInfo3d*>(neigh_info))->getType(); - neigh = dynamic_cast<Tetrahedron*>(const_cast<Element*>( neigh_info->getElement())); + neigh_el_type = neigh_info->getType(); + neigh = + dynamic_cast<Tetrahedron*>(const_cast<Element*>(neigh_info->getElement())); } else break; } @@ -558,7 +560,7 @@ namespace AMDiS { if (neigh == el) { (*el_info) = neigh_info; - return(0); + return 0; } /****************************************************************************/ @@ -582,18 +584,18 @@ namespace AMDiS { ElInfo* RefinementManager3d::refineFunction(ElInfo* el_info) { FUNCNAME("RefinementManager3d::refineFunction()"); - int n_neigh, bound = false; - DegreeOfFreedom *edge[2]; - RCNeighbourList *ref_list; + int n_neigh, bound = false; + DegreeOfFreedom *edge[2]; + RCNeighbourList *ref_list; if (el_info->getElement()->getMark() <= 0) - return(el_info); /* element may not be refined */ + return el_info; /* element may not be refined */ /****************************************************************************/ /* get memory for a list of all elements at the refinement edge */ /****************************************************************************/ ref_list = new RCNeighbourList(mesh->getMaxEdgeNeigh()); - ref_list->setElType(0, (dynamic_cast<ElInfo3d*>(el_info))->getType()); + ref_list->setElType(0, el_info->getType()); ref_list->setElement(0, el_info->getElement()); n_neigh = 1; diff --git a/AMDiS/src/Tetrahedron.h b/AMDiS/src/Tetrahedron.h index b645b3bb0a189aff6f88329ba72dbac124369829..d08907b86b83974dd379a6ce7042621aeb608901 100644 --- a/AMDiS/src/Tetrahedron.h +++ b/AMDiS/src/Tetrahedron.h @@ -44,7 +44,8 @@ namespace AMDiS { {} /// implements Element::clone - inline Element *clone() { + inline Element *clone() + { return new Tetrahedron(mesh); } diff --git a/AMDiS/src/Traverse.cc b/AMDiS/src/Traverse.cc index d349485db085a84124de4a16a22d4bc348511705..f2d48199749ba4ada2342714e75f7a7b91d00609 100644 --- a/AMDiS/src/Traverse.cc +++ b/AMDiS/src/Traverse.cc @@ -492,7 +492,7 @@ namespace AMDiS { while (stack_used > 1) { /* go up in tree until we can go down again */ stack_used--; - typ = dynamic_cast<ElInfo3d*>( elinfo_stack[stack_used])->getType(); + typ = elinfo_stack[stack_used]->getType(); nb = coarse_nb[typ][info_stack[stack_used]][nb]; if (nb == -1) break; @@ -510,20 +510,17 @@ namespace AMDiS { opp_vertex = old_elinfo->getOppVertex(neighbour); if (nb >= 0) { /* go to macro element neighbour */ - i = traverse_mel->getOppVertex(nb); traverse_mel = traverse_mel->getNeighbour(nb); if (traverse_mel == NULL) return(NULL); - if ((nb < 2) && (save_stack_used > 1)) { + if (nb < 2 && save_stack_used > 1) stack2_used = 2; /* go down one level in OLD hierarchy */ - } - else { + else stack2_used = 1; - } + elinfo2 = save_elinfo_stack[stack2_used]; el2 = elinfo2->getElement(); - stack_used = 1; elinfo_stack[stack_used]->fillMacroInfo(traverse_mel); info_stack[stack_used] = 0;