AMDiS/cmake/AMDIS.cmake.in

+set(AMDIS_NEED_CXX11 @ENABLE_CXX11@)
+set(AMDIS_NEED_UMFPACK @ENABLE_UMFPACK@)
+set(AMDIS_NEED_COMPRESSION @ENABLE_COMPRESSION@)
+set(AMDIS_NEED_EXTENSIONS @ENABLE_EXTENSIONS@)
+set(AMDIS_NEED_BASE_PROBLEMS @ENABLE_BASE_PROBLEMS@)
+set(AMDIS_NEED_REINIT @ENABLE_REINIT@)
+set(AMDIS_NEED_COMPOSITE_FEM @ENABLE_COMPOSITE_FEM@)
+set(AMDIS_NEED_ZOLTAN @ENABLE_ZOLTAN@)
+set(AMDIS_NEED_BDDCML @ENABLE_BDDCML@)
+set(AMDIS_NEED_HYPRE @ENABLE_HYPRE@)
+set(AMDIS_NEED_PNG @ENABLE_PNG@)
+set(AMDIS_NEED_SEQ_PETSC @ENABLE_SEQ_PETSC@)
+
+set(BUILD_SHARED_LIBS @BUILD_SHARED_LIBS@)
+set(CMAKE_BUILD_TYPE @CMAKE_BUILD_TYPE@)
+
+set(AMDIS_COMPILEFLAGS "")
+set(AMDIS_INCLUDE_DIRS "")
+set(AMDIS_LIBRARIES "")
+
+
+if (AMDIS_NEED_CXX11)
+  enable_cxx11(AMDIS_NEED_CXX11 AMDIS_COMPILEFLAGS)
+  if (NOT AMDIS_NEED_CXX11)
+    message(FATAL_ERROR "AMDiS was compiled with c++11 support, but the current compiler does not support this feature!")
+  endif (NOT AMDIS_NEED_CXX11)
+  list(APPEND AMDIS_COMPILEFLAGS "-DAMDIS_HAS_CXX11=1")
+else ()
+  list(APPEND AMDIS_COMPILEFLAGS "-DAMDIS_HAS_CXX11=0")
+endif (AMDIS_NEED_CXX11)
+
+
+# try to detect the AMDiS include directory
+# -------------------------------------------
+find_file(_AMDIS_H AMDiS.h PATHS ${AMDIS_DIR}/../../include/amdis/)
+if (_AMDIS_H)
+  get_filename_component(AMDIS_INCLUDE_DIR ${_AMDIS_H} PATH CACHE)
+  list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR})
+else ()
+  message(ERROR "Could not detect the AMDiS include directory. Please set the variable AMDIS_INCLUDE_DIR to the directory containing the AMDiS headers.")
+endif ()
+unset(_AMDIS_H CACHE)
+
+
+# MTL4 libraries
+# --------------------
+enable_mtl4(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+
+
+# AMDiS base libraries
+# --------------------
+find_library(_AMDIS_LIB amdis${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
+if (_AMDIS_LIB)
+  list(APPEND AMDIS_LIBRARIES optimized ${_AMDIS_LIB} debug ${_AMDIS_LIB}d)
+else ()
+  message(ERROR "Could not detect the AMDiS${POSTFIX} library. Please set the variable _AMDIS_LIB to the AMDiS${POSTFIX} library.")
+endif ()
+unset(_AMDIS_LIB CACHE)
+
+
+# Boost libraries
+# ---------------
+if (NOT BOOST_ROOT)
+  set(BOOST_ROOT @BOOST_ROOT@)
+endif (NOT BOOST_ROOT)
+if (NOT BOOST_LIBRARYDIR)
+  set(BOOST_LIBRARYDIR @BOOST_LIBRARYDIR@)
+endif (NOT BOOST_LIBRARYDIR)
+enable_boost(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+
+
+# umfpack library
+# --------------------
+if (AMDIS_NEED_UMFPACK)
+  set(AMDIS_SuiteSparse_DIR @SuiteSparse_DIR@)
+  set(AMDIS_UMFPACK_INCLUDE_DIR @UMFPACK_INCLUDE_DIRS@)
+  set(AMDIS_UMFPACK_LIB_DIR ${AMDIS_UMFPACK_INCLUDE_DIR}/../include)
+  enable_umfpack(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+endif (AMDIS_NEED_UMFPACK)
+
+
+# amdis extensions
+# ----------------
+if (AMDIS_NEED_EXTENSIONS)
+  find_library(_EXTENSIONS_LIB amdisextensions${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
+  if (_EXTENSIONS_LIB)
+    list(APPEND AMDIS_INCLUDE_DIRS
+      ${AMDIS_INCLUDE_DIR}/extensions
+      ${AMDIS_INCLUDE_DIR}/extensions/nanoflann
+      ${AMDIS_INCLUDE_DIR}/extensions/pugixml
+      ${AMDIS_INCLUDE_DIR}/extensions/time)
+    list(APPEND AMDIS_COMPILEFLAGS "-DHAVE_EXTENSIONS=1")
+    list(APPEND AMDIS_LIBRARIES optimized ${_EXTENSIONS_LIB} debug ${_EXTENSIONS_LIB}d)
+    if (AMDIS_NEED_BASE_PROBLEMS)
+      list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/extensions/base_problems)
+    endif (AMDIS_NEED_BASE_PROBLEMS)
+  else ()
+    message(FATAL_ERROR "Extensions library not found")
+  endif ()
+  unset(_EXTENSIONS_LIB CACHE)
+endif (AMDIS_NEED_EXTENSIONS)
+
+
+# reinit library
+# --------------
+if (AMDIS_NEED_REINIT)
+  find_library(_REINIT_LIB amdisreinit${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
+  if (_REINIT_LIB)
+    list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/reinit)
+    list(APPEND AMDIS_LIBRARIES optimized ${_REINIT_LIB} debug ${_REINIT_LIB}d)
+  else ()
+    message(FATAL_ERROR "Reinit library not found")
+  endif ()
+  unset(_REINIT_LIB CACHE)
+endif (AMDIS_NEED_REINIT)
+
+
+# compositeFEM library
+# --------------------
+if (AMDIS_NEED_COMPOSITE_FEM)
+  find_library(_COMPOSITE_FEM_LIB amdiscompositefem${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
+  if (_COMPOSITE_FEM_LIB)
+    list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/compositeFEM)
+    list(APPEND AMDIS_LIBRARIES optimized ${_COMPOSITE_FEM_LIB} debug ${_COMPOSITE_FEM_LIB}d)
+  else ()
+    message(FATAL_ERROR "CompositeFEM library not found")
+  endif ()
+  unset(_COMPOSITE_FEM_LIB CACHE)
+endif (AMDIS_NEED_COMPOSITE_FEM)
+
+
+# muparser library
+# --------------------
+find_library(_MUPARSER_LIB muparser PATHS ${AMDIS_DIR}/../../lib/amdis/)
+if (_MUPARSER_LIB)
+  list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/muparser)
+  list(APPEND AMDIS_LIBRARIES ${_MUPARSER_LIB})
+else ()
+  message(ERROR "MuParser library not found")
+endif ()
+unset(_MUPARSER_LIB CACHE)
+
+
+# Additional libraries
+# ==================================================================================================
+
+if (AMDIS_HAS_PARALLEL_DOMAIN)
+  enable_mpi(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+  enable_petsc(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+  list(APPEND AMDIS_COMPILEFLAGS "-DHAVE_PARALLEL_DOMAIN_AMDIS=1")
+endif (AMDIS_HAS_PARALLEL_DOMAIN)
+
+# Zoltan library
+# --------------
+if (AMDIS_NEED_ZOLTAN)
+  enable_zoltan(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+endif ()
+
+
+# BDDCML library
+# --------------
+if (AMDIS_NEED_BDDCML)
+  enable_bddcml(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+endif ()
+
+
+# Hypre library
+# --------------
+if (AMDIS_NEED_HYPRE)
+  enable_hypre(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+endif ()
+
+
+# PNG library
+# --------------
+if (AMDIS_NEED_PNG)
+  enable_png(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+endif ()
+
+# Sequential PETSc library
+# --------------
+if (AMDIS_NEED_SEQ_PETSC AND NOT AMDIS_HAS_PARALLEL_DOMAIN)
+  enable_mpi(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+  enable_petsc(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
+  list(APPEND COMPILEFLAGS "-DHAVE_SEQ_PETSC=1")
+endif ()

AMDiS/cmake/AMDISConfig.cmake.in

+# This configuration file is shipped with the FEM-Toolbox AMDiS.
+# It simplifies the configure of different amdis-versions.
+#
+# We set the following variables:
+#   AMDIS_INCLUDE_DIRS    all include directories (mtl, umfpack, parmetis, metis, ...)
+#   AMDIS_LIBRARIES       the needed libraries
+#   AMDiS_COMPILEFLAGS    some compile flags for amdis
+#
+# Use this package in the following way:
+#
+#   find_package(AMDiS REQUIRED [PARALLEL|SEQUENTIAL])
+#   add_executable(yourTarget <yourSources>)
+#   include_directories(${AMDIS_INCLUDE_DIRS})
+#   compile_definitions(${AMDIS_COMPILEFLAGS})
+#   target_link_libraries(yourTarget ${AMDIS_LIBRARIES})
+#
+# The default component for this package is SEQUENTIAL.
+#
+
+if (${CMAKE_VERSION} VERSION_LESS "2.8.10")
+    message(FATAL_ERROR "The Configuration file was created for CMake version >= 2.8.10")
+endif ()
+
+list(APPEND CMAKE_MODULE_PATH ${AMDIS_DIR})
+
+set(IS_AMDISCONFIG true)
+
+set(AMDIS_USE_FILE ${AMDIS_DIR}/AMDISUse.cmake)
+
+# Include macros
+include(enable_cxx11)
+include(enable_mtl4)
+include(enable_boost)
+include(enable_umfpack)
+include(enable_petsc)
+include(enable_zoltan)
+include(enable_bddcml)
+include(enable_hypre)
+include(enable_png)
+
+# enable components
+# -----------------
+
+if (AMDIS_FIND_REQUIRED_PARALLEL AND AMDIS_FIND_REQUIRED_SEQUENTIAL)
+  message(WARNING "Choose either SEQUENTIAL or PARALLEL as component, not both! Falling back to the default SEQUENTIAL.")
+  set(AMDIS_FIND_REQUIRED_PARALLEL OFF)
+endif ()
+
+set(AMDIS_CONFIGURATION "")
+
+# parallel of sequential version
+if (AMDIS_FIND_REQUIRED_PARALLEL)
+  set(AMDIS_HAS_PARALLEL_DOMAIN ON)
+  set(POSTFIX "-p")
+  list(APPEND AMDIS_CONFIGURATION "PARALLEL")
+else ()
+  set(AMDIS_HAS_PARALLEL_DOMAIN OFF)
+  set(POSTFIX "-s")
+  list(APPEND AMDIS_CONFIGURATION "SEQUENTIAL")
+endif ()
+
+if (MSVC)
+  add_definitions(-DNOMINMAX -D_CONSOLE -DSTRICT -D_SCL_SECURE_NO_WARNINGS -D_CRT_SECURE_NO_WARNINGS)
+endif (MSVC)
+
+if (NOT EXISTS ${AMDIS_DIR}/AMDIS${POSTFIX}.cmake)
+  message(FATAL_ERROR "Configuration ${AMDIS_CONFIGURATION} can not be found in ${AMDIS_DIR}.")
+endif ()
+
+# include component configuration
+include(AMDIS${POSTFIX})

AMDiS/cmake/AMDISUse.cmake

+# globally add compile options and include directories
+add_definitions(${AMDIS_COMPILEFLAGS})
+include_directories(${AMDIS_INCLUDE_DIRS})

AMDiS/cmake/CMakeLists.txt

+cmake_minimum_required(VERSION 2.8.10 FATAL_ERROR)
+if(POLICY CMP0048)
+  cmake_policy(SET CMP0048 OLD)
+endif()
+project(AMDiS)
+
+# set some policies
+cmake_policy(SET CMP0017 OLD)
+if(POLICY CMP0042)
+  cmake_policy(SET CMP0042 NEW)
+endif()
+if(POLICY CMP0054)
+  cmake_policy(SET CMP0054 NEW)
+endif()
+
+list(APPEND CMAKE_MODULE_PATH ${BASE_DIR}/cmake)
+
+# Include macros
+include(enable_cxx11)
+include(enable_mtl4)
+include(enable_boost)
+include(enable_umfpack)
+include(enable_petsc)
+include(enable_zoltan)
+include(enable_bddcml)
+include(enable_hypre)
+include(enable_png)
+
+# ------------------------------------------------------------------------------
+
+include_directories(${SOURCE_DIR})
+set(AMDIS_INCLUDE_DIRS "")
+set(COMPILEFLAGS "")
+
+enable_cxx11(ENABLE_CXX11 COMPILEFLAGS)
+if (ENABLE_CXX11)
+  list(APPEND COMPILEFLAGS "-DAMDIS_HAS_CXX11=1")
+else ()
+  list(APPEND COMPILEFLAGS "-DAMDIS_HAS_CXX11=0")
+endif (ENABLE_CXX11)
+
+enable_mtl4(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
+enable_boost(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
+
+if (ENABLE_UMFPACK)
+  enable_umfpack(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
+endif (ENABLE_UMFPACK)
+
+if (ENABLE_PNG)
+  enable_png(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
+endif (ENABLE_PNG)
+
+# ------------------------------------------------------------------------------
+
+set(AMDIS_SRC "")
+list(APPEND AMDIS_SRC
+    ${SOURCE_DIR}/AdaptBase.cc
+    ${SOURCE_DIR}/AdaptInfo.cc
+    ${SOURCE_DIR}/AdaptInstationary.cc
+    ${SOURCE_DIR}/AdaptStationary.cc
+    ${SOURCE_DIR}/AMDiS.cc
+    ${SOURCE_DIR}/Assembler.cc
+    ${SOURCE_DIR}/BasisFunction.cc
+    ${SOURCE_DIR}/Boundary.cc
+    ${SOURCE_DIR}/BoundaryManager.cc
+    ${SOURCE_DIR}/BoundaryObject.cc
+    ${SOURCE_DIR}/Bubble.cc
+    ${SOURCE_DIR}/Cholesky.cc
+    ${SOURCE_DIR}/CoarseningManager.cc
+    ${SOURCE_DIR}/CoarseningManager1d.cc
+    ${SOURCE_DIR}/CoarseningManager2d.cc
+    ${SOURCE_DIR}/CoarseningManager3d.cc
+    ${SOURCE_DIR}/ComponentTraverseInfo.cc
+    ${SOURCE_DIR}/CouplingIterationInterface.cc
+    ${SOURCE_DIR}/CreatorMap.cc
+    ${SOURCE_DIR}/DOFAdmin.cc
+    ${SOURCE_DIR}/DOFIndexed.cc
+    ${SOURCE_DIR}/DOFMatrix.cc
+    ${SOURCE_DIR}/DOFVector.cc
+    ${SOURCE_DIR}/DirichletBC.cc
+    ${SOURCE_DIR}/DualTraverse.cc
+    ${SOURCE_DIR}/ElInfo.cc
+    ${SOURCE_DIR}/ElInfo1d.cc
+    ${SOURCE_DIR}/ElInfo2d.cc
+    ${SOURCE_DIR}/ElInfo3d.cc
+    ${SOURCE_DIR}/ElInfoStack.cc
+    ${SOURCE_DIR}/Element.cc
+    ${SOURCE_DIR}/ElementData.cc
+    ${SOURCE_DIR}/ElementDofIterator.cc
+    ${SOURCE_DIR}/ElementRegion_ED.cc
+    ${SOURCE_DIR}/FiniteElemSpace.cc
+    ${SOURCE_DIR}/FirstOrderAssembler.cc
+    ${SOURCE_DIR}/FirstOrderTerm.cc
+    ${SOURCE_DIR}/FixVec.cc
+    ${SOURCE_DIR}/Global.cc
+    ${SOURCE_DIR}/Initfile.cc
+    ${SOURCE_DIR}/Lagrange.cc
+    ${SOURCE_DIR}/LeafData.cc
+    ${SOURCE_DIR}/Line.cc
+    ${SOURCE_DIR}/MacroElement.cc
+    ${SOURCE_DIR}/Marker.cc
+    ${SOURCE_DIR}/MatrixVector.cc
+    ${SOURCE_DIR}/Mesh.cc
+    ${SOURCE_DIR}/MeshStructure.cc
+    ${SOURCE_DIR}/Operator.cc
+    ${SOURCE_DIR}/OperatorTerm.cc
+    ${SOURCE_DIR}/Parametric.cc
+    ${SOURCE_DIR}/PeriodicBC.cc
+    ${SOURCE_DIR}/ProblemInstat.cc
+    ${SOURCE_DIR}/ProblemInterpol.cc
+    ${SOURCE_DIR}/ProblemStat.cc
+    ${SOURCE_DIR}/Projection.cc
+    ${SOURCE_DIR}/QPInfo.cc
+    ${SOURCE_DIR}/QPsiPhi.cc
+    ${SOURCE_DIR}/Quadrature.cc
+    ${SOURCE_DIR}/RCNeighbourList.cc
+    ${SOURCE_DIR}/Recovery.cc
+    ${SOURCE_DIR}/RefinementManager.cc
+    ${SOURCE_DIR}/RefinementManager1d.cc
+    ${SOURCE_DIR}/RefinementManager2d.cc
+    ${SOURCE_DIR}/RefinementManager3d.cc
+    ${SOURCE_DIR}/RobinBC.cc
+    ${SOURCE_DIR}/ScalableQuadrature.cc
+    ${SOURCE_DIR}/SecondOrderAssembler.cc
+    ${SOURCE_DIR}/SecondOrderTerm.cc
+    ${SOURCE_DIR}/Serializer.cc
+    ${SOURCE_DIR}/StandardProblemIteration.cc
+    ${SOURCE_DIR}/SubAssembler.cc
+    ${SOURCE_DIR}/SubElInfo.cc
+    ${SOURCE_DIR}/SubQuadrature.cc
+    ${SOURCE_DIR}/SurfaceQuadrature.cc
+    ${SOURCE_DIR}/SurfaceRegion_ED.cc
+    ${SOURCE_DIR}/SystemVector.cc
+    ${SOURCE_DIR}/Tetrahedron.cc
+    ${SOURCE_DIR}/Timer.cc
+    ${SOURCE_DIR}/Traverse.cc
+    ${SOURCE_DIR}/Triangle.cc
+    ${SOURCE_DIR}/VertexVector.cc
+    ${SOURCE_DIR}/ZeroOrderAssembler.cc
+    ${SOURCE_DIR}/ZeroOrderTerm.cc
+    ${SOURCE_DIR}/est/Estimator.cc
+    ${SOURCE_DIR}/est/RecoveryEstimator.cc
+    ${SOURCE_DIR}/est/ResidualEstimator.cc
+    ${SOURCE_DIR}/est/SimpleResidualEstimator.cc
+    ${SOURCE_DIR}/io/ArhReader.cc
+    ${SOURCE_DIR}/io/detail/ArhReader.cc
+    ${SOURCE_DIR}/io/Arh2Reader.cc
+    ${SOURCE_DIR}/io/Arh2Writer.cc
+    ${SOURCE_DIR}/io/Arh3Reader.cc
+    ${SOURCE_DIR}/io/Arh3Writer.cc
+    ${SOURCE_DIR}/io/detail/Arh2Reader.cc
+    ${SOURCE_DIR}/io/detail/ArhWriter.cc
+    ${SOURCE_DIR}/io/detail/Arh2Writer.cc
+    ${SOURCE_DIR}/io/detail/Arh3Reader.cc
+    ${SOURCE_DIR}/io/detail/Arh3Writer.cc
+    ${SOURCE_DIR}/io/DofWriter.cc
+    ${SOURCE_DIR}/io/ElementFileWriter.cc
+    ${SOURCE_DIR}/io/FileWriterInterface.cc
+    ${SOURCE_DIR}/io/FileWriter.cc
+    ${SOURCE_DIR}/io/GNUPlotWriter.cc
+    ${SOURCE_DIR}/io/MacroInfo.cc
+    ${SOURCE_DIR}/io/MacroReader.cc
+    ${SOURCE_DIR}/io/MacroWriter.cc
+    ${SOURCE_DIR}/io/PngReader.cc
+    ${SOURCE_DIR}/io/PngWriter.cc
+    ${SOURCE_DIR}/io/PovrayWriter.cc
+    ${SOURCE_DIR}/io/Spreadsheet.cc
+    ${SOURCE_DIR}/io/ValueReader.cc
+    ${SOURCE_DIR}/io/ValueWriter.cc
+    ${SOURCE_DIR}/io/VtkWriter.cc
+    ${SOURCE_DIR}/io/VtkVectorWriter.cc
+    ${SOURCE_DIR}/io/detail/VtkWriter.cc
+    ${SOURCE_DIR}/nonlin/ProblemNonLin.cc
+    ${SOURCE_DIR}/solver/SolverMatrix.cc
+    ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc
+    ${SOURCE_DIR}/time/RosenbrockMethod.cc
+    ${SOURCE_DIR}/time/RosenbrockStationary.cc
+# debugging files
+    ${SOURCE_DIR}/Debug.cc
+    ${SOURCE_DIR}/GlobalDOFNumbering.cc      # not used by any other class
+    ${SOURCE_DIR}/GlobalElementNumbering.cc  # not used by any other class
+    ${SOURCE_DIR}/ProblemStatDbg.cc
+)
+
+if (ENABLE_MPI)
+  enable_mpi(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
+  list(APPEND COMPILEFLAGS "-DHAVE_MPI=1")
+endif (ENABLE_MPI)
+
+include(amdis_parallel)
+include(muparser)
+
+# ------------------------------------------------------------------------------
+
+if (ENABLE_COMPRESSION)
+  list(APPEND COMPILEFLAGS "-DAMDIS_HAS_COMPRESSION")
+endif (ENABLE_COMPRESSION)
+
+if (ENABLE_EXTENSIONS)
+  include(amdis_extensions)
+  add_library(amdis_extensions ${EXTENSIONS_SRC})
+
+  set_target_properties(amdis_extensions PROPERTIES OUTPUT_NAME amdisextensions${POSTFIX}
+                                              DEBUG_OUTPUT_NAME amdisextensions${POSTFIX}d)
+  install(TARGETS amdis_extensions DESTINATION lib/amdis/ )
+endif (ENABLE_EXTENSIONS)
+
+if (ENABLE_REINIT)
+  include(amdis_reinit)
+  add_library(amdis_reinit ${REINIT_SRC})
+
+  set_target_properties(amdis_reinit PROPERTIES OUTPUT_NAME amdisreinit${POSTFIX}
+                                          DEBUG_OUTPUT_NAME amdisreinit${POSTFIX}d)
+  install(TARGETS amdis_reinit DESTINATION lib/amdis/ )
+endif (ENABLE_REINIT)
+
+if (ENABLE_COMPOSITE_FEM)
+  include(amdis_compositeFEM)
+  add_library(amdis_compositeFEM ${COMPOSITE_FEM_SRC})
+
+  set_target_properties(amdis_compositeFEM PROPERTIES OUTPUT_NAME amdiscompositefem${POSTFIX}
+                                                DEBUG_OUTPUT_NAME amdiscompositefem${POSTFIX}d)
+  install(TARGETS amdis_compositeFEM DESTINATION lib/amdis/ )
+endif (ENABLE_COMPOSITE_FEM)
+
+if (ENABLE_SEQ_PETSC)
+  include(amdis_seq_petsc)
+endif (ENABLE_SEQ_PETSC)
+
+# ------------------------------------------------------------------------------
+
+include_directories(${AMDIS_INCLUDE_DIRS})
+add_definitions(${COMPILEFLAGS})
+
+add_library(amdis ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
+
+
+# specify how to install this target:
+# -----------------------------------
+
+set(INSTALL_SUBDIRS . config nonlin est expressions operations traits
+                      utility time solver solver/details solver/itl io io/detail)
+
+foreach (SUBDIR ${INSTALL_SUBDIRS})
+  file(GLOB HEADERS "${SOURCE_DIR}/${SUBDIR}/*.h*")
+  install(FILES ${HEADERS} DESTINATION include/amdis/${SUBDIR}/)
+endforeach ()
+
+file(GLOB CMAKE_MACROS "${BASE_DIR}/cmake/enable_*.cmake")
+install(FILES ${CMAKE_MACROS} DESTINATION share/amdis/)
+install(FILES ${BASE_DIR}/cmake3/parse_zoltan_makefile.cmake DESTINATION share/amdis/)
+
+install(DIRECTORY ${BASE_DIR}/lib/mtl4/ DESTINATION include/amdis/mtl4/
+  FILES_MATCHING PATTERN "*.hpp"
+  PATTERN ".svn" EXCLUDE
+  PATTERN ".svn/*" EXCLUDE
+  PATTERN "mtl4/libs" EXCLUDE
+  PATTERN "mtl4/extern" EXCLUDE)
+
+set_target_properties(amdis PROPERTIES OUTPUT_NAME amdis${POSTFIX}
+                                 DEBUG_OUTPUT_NAME amdis${POSTFIX}d)
+install(TARGETS amdis DESTINATION lib/amdis/ )
+
+
+# generate configuration file:
+# ----------------------------
+
+# global configuration
+configure_file(${BASE_DIR}/cmake/AMDISConfig.cmake.in
+  ${AMDiS_BINARY_DIR}/AMDISConfig.cmake
+  @ONLY
+)
+
+# component configuration
+configure_file(${BASE_DIR}/cmake/AMDIS.cmake.in
+  ${AMDiS_BINARY_DIR}/AMDIS${POSTFIX}.cmake
+  @ONLY
+)
+
+install(FILES ${AMDiS_BINARY_DIR}/AMDISConfig.cmake DESTINATION share/amdis/)
+install(FILES ${AMDiS_BINARY_DIR}/AMDIS${POSTFIX}.cmake DESTINATION share/amdis/)
+install(FILES ${BASE_DIR}/cmake3/AMDISUse.cmake DESTINATION share/amdis/)

AMDiS/cmake/CorrectWindowsPaths.cmake

+# CorrectWindowsPaths - this module defines one macro
+#
+# CONVERT_CYGWIN_PATH( PATH )
+#  This uses the command cygpath (provided by cygwin) to convert
+#  unix-style paths into paths useable by cmake on windows
+
+macro (CONVERT_CYGWIN_PATH _path)
+  if (WIN32)
+    EXECUTE_PROCESS(COMMAND cygpath.exe -m ${${_path}}
+      OUTPUT_VARIABLE ${_path})
+    string (STRIP ${${_path}} ${_path})
+  endif (WIN32)
+endmacro (CONVERT_CYGWIN_PATH)
+

AMDiS/cmake/amdis_reinit.cmake

+# specify the target and requirements for the reinit library
+
+set(REINIT_SOURCE_DIR ${SOURCE_DIR}/reinit)
+file(GLOB REINIT_SRC ${REINIT_SOURCE_DIR}/*.cc)
+
+list(APPEND COMPILEFLAGS "-DHAVE_REINIT=1")
+list(APPEND AMDIS_INCLUDE_DIRS ${REINIT_SOURCE_DIR})
+
+# specify how to install this target:
+# -----------------------------------
+
+file(GLOB RINIT_HEADERS "${REINIT_SOURCE_DIR}/*.h*")
+install(FILES ${RINIT_HEADERS} DESTINATION include/amdis/reinit)