diff --git a/Python-Scripts/1-ParameterFamily-Minimizers.py b/JNLS_plotScripts/1-ParameterFamily-Minimizers.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily-Minimizers.py
rename to JNLS_plotScripts/1-ParameterFamily-Minimizers.py
diff --git a/Python-Scripts/1-ParameterFamily-MinimizersTest.py b/JNLS_plotScripts/1-ParameterFamily-MinimizersTest.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily-MinimizersTest.py
rename to JNLS_plotScripts/1-ParameterFamily-MinimizersTest.py
diff --git a/Python-Scripts/1-ParameterFamily-Minimizers_Test.py b/JNLS_plotScripts/1-ParameterFamily-Minimizers_Test.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily-Minimizers_Test.py
rename to JNLS_plotScripts/1-ParameterFamily-Minimizers_Test.py
diff --git a/Python-Scripts/1-ParameterFamily-Minimizers_v2.py b/JNLS_plotScripts/1-ParameterFamily-Minimizers_v2.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily-Minimizers_v2.py
rename to JNLS_plotScripts/1-ParameterFamily-Minimizers_v2.py
diff --git a/Python-Scripts/1-ParameterFamily-Minimizers_v3.py b/JNLS_plotScripts/1-ParameterFamily-Minimizers_v3.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily-Minimizers_v3.py
rename to JNLS_plotScripts/1-ParameterFamily-Minimizers_v3.py
diff --git a/Python-Scripts/1-ParameterFamily_G+.py b/JNLS_plotScripts/1-ParameterFamily_G+.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily_G+.py
rename to JNLS_plotScripts/1-ParameterFamily_G+.py
diff --git a/Python-Scripts/1-ParameterFamily_G+_Flat.py b/JNLS_plotScripts/1-ParameterFamily_G+_Flat.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily_G+_Flat.py
rename to JNLS_plotScripts/1-ParameterFamily_G+_Flat.py
diff --git a/Python-Scripts/1-ParameterFamily_G+_Flat_v2.py b/JNLS_plotScripts/1-ParameterFamily_G+_Flat_v2.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily_G+_Flat_v2.py
rename to JNLS_plotScripts/1-ParameterFamily_G+_Flat_v2.py
diff --git a/Python-Scripts/1-ParameterFamily_G+_v2.py b/JNLS_plotScripts/1-ParameterFamily_G+_v2.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily_G+_v2.py
rename to JNLS_plotScripts/1-ParameterFamily_G+_v2.py
diff --git a/Python-Scripts/1-ParameterFamily_G+_v3.py b/JNLS_plotScripts/1-ParameterFamily_G+_v3.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily_G+_v3.py
rename to JNLS_plotScripts/1-ParameterFamily_G+_v3.py
diff --git a/Python-Scripts/1-ParameterFamily_G+_v4.py b/JNLS_plotScripts/1-ParameterFamily_G+_v4.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily_G+_v4.py
rename to JNLS_plotScripts/1-ParameterFamily_G+_v4.py
diff --git a/Python-Scripts/1-ParameterFamily_G+_v5.py b/JNLS_plotScripts/1-ParameterFamily_G+_v5.py
similarity index 100%
rename from Python-Scripts/1-ParameterFamily_G+_v5.py
rename to JNLS_plotScripts/1-ParameterFamily_G+_v5.py
diff --git a/Python-Scripts/2DPhaseDiagram_PlotScript.py b/JNLS_plotScripts/2DPhaseDiagram_PlotScript.py
similarity index 100%
rename from Python-Scripts/2DPhaseDiagram_PlotScript.py
rename to JNLS_plotScripts/2DPhaseDiagram_PlotScript.py
diff --git a/Python-Scripts/2DPhaseDiagram_PlotScriptV2.py b/JNLS_plotScripts/2DPhaseDiagram_PlotScriptV2.py
similarity index 100%
rename from Python-Scripts/2DPhaseDiagram_PlotScriptV2.py
rename to JNLS_plotScripts/2DPhaseDiagram_PlotScriptV2.py
diff --git a/Python-Scripts/2DPhaseDiagram_Ratios_PlotScript.py b/JNLS_plotScripts/2DPhaseDiagram_Ratios_PlotScript.py
similarity index 100%
rename from Python-Scripts/2DPhaseDiagram_Ratios_PlotScript.py
rename to JNLS_plotScripts/2DPhaseDiagram_Ratios_PlotScript.py
diff --git a/Python-Scripts/CellScript.py b/JNLS_plotScripts/CellScript.py
similarity index 100%
rename from Python-Scripts/CellScript.py
rename to JNLS_plotScripts/CellScript.py
diff --git a/Python-Scripts/ClassifyMin.py b/JNLS_plotScripts/ClassifyMin.py
similarity index 100%
rename from Python-Scripts/ClassifyMin.py
rename to JNLS_plotScripts/ClassifyMin.py
diff --git a/Python-Scripts/ClassifyMinVec.py b/JNLS_plotScripts/ClassifyMinVec.py
similarity index 100%
rename from Python-Scripts/ClassifyMinVec.py
rename to JNLS_plotScripts/ClassifyMinVec.py
diff --git a/Python-Scripts/ClassifyMin_New.py b/JNLS_plotScripts/ClassifyMin_New.py
similarity index 100%
rename from Python-Scripts/ClassifyMin_New.py
rename to JNLS_plotScripts/ClassifyMin_New.py
diff --git a/Python-Scripts/CylindricalMinimizer-Plot.py b/JNLS_plotScripts/CylindricalMinimizer-Plot.py
similarity index 100%
rename from Python-Scripts/CylindricalMinimizer-Plot.py
rename to JNLS_plotScripts/CylindricalMinimizer-Plot.py
diff --git a/Python-Scripts/CylindricalMinimizer-Plot_newColors.py b/JNLS_plotScripts/CylindricalMinimizer-Plot_newColors.py
similarity index 100%
rename from Python-Scripts/CylindricalMinimizer-Plot_newColors.py
rename to JNLS_plotScripts/CylindricalMinimizer-Plot_newColors.py
diff --git a/Python-Scripts/CylindricalMinimizer-Plot_v2.py b/JNLS_plotScripts/CylindricalMinimizer-Plot_v2.py
similarity index 100%
rename from Python-Scripts/CylindricalMinimizer-Plot_v2.py
rename to JNLS_plotScripts/CylindricalMinimizer-Plot_v2.py
diff --git a/Python-Scripts/Energy_ContourG+.py b/JNLS_plotScripts/Energy_ContourG+.py
similarity index 100%
rename from Python-Scripts/Energy_ContourG+.py
rename to JNLS_plotScripts/Energy_ContourG+.py
diff --git a/Python-Scripts/Energy_ContourG+_plotly.py b/JNLS_plotScripts/Energy_ContourG+_plotly.py
similarity index 100%
rename from Python-Scripts/Energy_ContourG+_plotly.py
rename to JNLS_plotScripts/Energy_ContourG+_plotly.py
diff --git a/Python-Scripts/Energy_ContourG+_v2.py b/JNLS_plotScripts/Energy_ContourG+_v2.py
similarity index 100%
rename from Python-Scripts/Energy_ContourG+_v2.py
rename to JNLS_plotScripts/Energy_ContourG+_v2.py
diff --git a/Python-Scripts/Energy_ContourG+_v3.py b/JNLS_plotScripts/Energy_ContourG+_v3.py
similarity index 100%
rename from Python-Scripts/Energy_ContourG+_v3.py
rename to JNLS_plotScripts/Energy_ContourG+_v3.py
diff --git a/Python-Scripts/Energy_ContourG+_v3_plotSurf.py b/JNLS_plotScripts/Energy_ContourG+_v3_plotSurf.py
similarity index 100%
rename from Python-Scripts/Energy_ContourG+_v3_plotSurf.py
rename to JNLS_plotScripts/Energy_ContourG+_v3_plotSurf.py
diff --git a/Python-Scripts/Energy_ContourG+_v4.py b/JNLS_plotScripts/Energy_ContourG+_v4.py
similarity index 100%
rename from Python-Scripts/Energy_ContourG+_v4.py
rename to JNLS_plotScripts/Energy_ContourG+_v4.py
diff --git a/Python-Scripts/HelperFunctions.py b/JNLS_plotScripts/HelperFunctions.py
similarity index 100%
rename from Python-Scripts/HelperFunctions.py
rename to JNLS_plotScripts/HelperFunctions.py
diff --git a/Paraview-Scripts/ParaViewSettings.txt b/JNLS_plotScripts/ParaViewSettings.txt
similarity index 100%
rename from Paraview-Scripts/ParaViewSettings.txt
rename to JNLS_plotScripts/ParaViewSettings.txt
diff --git a/Python-Scripts/PhaseDiagram.py b/JNLS_plotScripts/PhaseDiagram.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram.py
rename to JNLS_plotScripts/PhaseDiagram.py
diff --git a/Python-Scripts/PhaseDiagram_Contour.py b/JNLS_plotScripts/PhaseDiagram_Contour.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_Contour.py
rename to JNLS_plotScripts/PhaseDiagram_Contour.py
diff --git a/Python-Scripts/PhaseDiagram_ContourSubPlots.py b/JNLS_plotScripts/PhaseDiagram_ContourSubPlots.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_ContourSubPlots.py
rename to JNLS_plotScripts/PhaseDiagram_ContourSubPlots.py
diff --git a/Python-Scripts/PhaseDiagram_ContourSubPlots_v2.py b/JNLS_plotScripts/PhaseDiagram_ContourSubPlots_v2.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_ContourSubPlots_v2.py
rename to JNLS_plotScripts/PhaseDiagram_ContourSubPlots_v2.py
diff --git a/Python-Scripts/PhaseDiagram_Contour_v2.py b/JNLS_plotScripts/PhaseDiagram_Contour_v2.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_Contour_v2.py
rename to JNLS_plotScripts/PhaseDiagram_Contour_v2.py
diff --git a/Python-Scripts/PhaseDiagram_CurvContourSubPlots.py b/JNLS_plotScripts/PhaseDiagram_CurvContourSubPlots.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_CurvContourSubPlots.py
rename to JNLS_plotScripts/PhaseDiagram_CurvContourSubPlots.py
diff --git a/Python-Scripts/PhaseDiagram_CurvContourSubPlots_Jumps.py b/JNLS_plotScripts/PhaseDiagram_CurvContourSubPlots_Jumps.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_CurvContourSubPlots_Jumps.py
rename to JNLS_plotScripts/PhaseDiagram_CurvContourSubPlots_Jumps.py
diff --git a/Python-Scripts/PhaseDiagram_CurvContourSubPlots_v2.py b/JNLS_plotScripts/PhaseDiagram_CurvContourSubPlots_v2.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_CurvContourSubPlots_v2.py
rename to JNLS_plotScripts/PhaseDiagram_CurvContourSubPlots_v2.py
diff --git a/Python-Scripts/PhaseDiagram_CurvContourSubPlots_v3.py b/JNLS_plotScripts/PhaseDiagram_CurvContourSubPlots_v3.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_CurvContourSubPlots_v3.py
rename to JNLS_plotScripts/PhaseDiagram_CurvContourSubPlots_v3.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScript.py b/JNLS_plotScripts/PhaseDiagram_PlotScript.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScript.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScript.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScriptV2.py b/JNLS_plotScripts/PhaseDiagram_PlotScriptV2.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScriptV2.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScriptV2.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScriptV3.py b/JNLS_plotScripts/PhaseDiagram_PlotScriptV3.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScriptV3.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScriptV3.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScriptV4.py b/JNLS_plotScripts/PhaseDiagram_PlotScriptV4.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScriptV4.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScriptV4.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScriptV4_shifted.py b/JNLS_plotScripts/PhaseDiagram_PlotScriptV4_shifted.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScriptV4_shifted.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScriptV4_shifted.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScript_BetaSmallerOne.py b/JNLS_plotScripts/PhaseDiagram_PlotScript_BetaSmallerOne.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScript_BetaSmallerOne.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScript_BetaSmallerOne.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScript_Gamma0_Curvature_shifted.py b/JNLS_plotScripts/PhaseDiagram_PlotScript_Gamma0_Curvature_shifted.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScript_Gamma0_Curvature_shifted.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScript_Gamma0_Curvature_shifted.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScript_Gamma0_shifted.py b/JNLS_plotScripts/PhaseDiagram_PlotScript_Gamma0_shifted.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScript_Gamma0_shifted.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScript_Gamma0_shifted.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScript_GammaInf_Curvature_shifted.py b/JNLS_plotScripts/PhaseDiagram_PlotScript_GammaInf_Curvature_shifted.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScript_GammaInf_Curvature_shifted.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScript_GammaInf_Curvature_shifted.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScript_GammaInf_shifted.py b/JNLS_plotScripts/PhaseDiagram_PlotScript_GammaInf_shifted.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScript_GammaInf_shifted.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScript_GammaInf_shifted.py
diff --git a/Python-Scripts/PhaseDiagram_PlotScript_ReverseDirection.py b/JNLS_plotScripts/PhaseDiagram_PlotScript_ReverseDirection.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_PlotScript_ReverseDirection.py
rename to JNLS_plotScripts/PhaseDiagram_PlotScript_ReverseDirection.py
diff --git a/Python-Scripts/PhaseDiagram_Test.py b/JNLS_plotScripts/PhaseDiagram_Test.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_Test.py
rename to JNLS_plotScripts/PhaseDiagram_Test.py
diff --git a/Python-Scripts/PhaseDiagram_backup.py b/JNLS_plotScripts/PhaseDiagram_backup.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_backup.py
rename to JNLS_plotScripts/PhaseDiagram_backup.py
diff --git a/Python-Scripts/PhaseDiagram_intermediateGamma.py b/JNLS_plotScripts/PhaseDiagram_intermediateGamma.py
similarity index 100%
rename from Python-Scripts/PhaseDiagram_intermediateGamma.py
rename to JNLS_plotScripts/PhaseDiagram_intermediateGamma.py
diff --git a/Python-Scripts/Plot-1-ParameterFamily.py b/JNLS_plotScripts/Plot-1-ParameterFamily.py
similarity index 100%
rename from Python-Scripts/Plot-1-ParameterFamily.py
rename to JNLS_plotScripts/Plot-1-ParameterFamily.py
diff --git a/Python-Scripts/Plot-Angle-Alpha_intermediateGamma.py b/JNLS_plotScripts/Plot-Angle-Alpha_intermediateGamma.py
similarity index 100%
rename from Python-Scripts/Plot-Angle-Alpha_intermediateGamma.py
rename to JNLS_plotScripts/Plot-Angle-Alpha_intermediateGamma.py
diff --git a/Python-Scripts/Plot-Angle-Alpha_intermediateGamma_v2.py b/JNLS_plotScripts/Plot-Angle-Alpha_intermediateGamma_v2.py
similarity index 100%
rename from Python-Scripts/Plot-Angle-Alpha_intermediateGamma_v2.py
rename to JNLS_plotScripts/Plot-Angle-Alpha_intermediateGamma_v2.py
diff --git a/Python-Scripts/Plot-Angle-Gamma.py b/JNLS_plotScripts/Plot-Angle-Gamma.py
similarity index 100%
rename from Python-Scripts/Plot-Angle-Gamma.py
rename to JNLS_plotScripts/Plot-Angle-Gamma.py
diff --git a/Python-Scripts/Plot-Angle-GammaV2.py b/JNLS_plotScripts/Plot-Angle-GammaV2.py
similarity index 100%
rename from Python-Scripts/Plot-Angle-GammaV2.py
rename to JNLS_plotScripts/Plot-Angle-GammaV2.py
diff --git a/Python-Scripts/Plot-Angle-GammaV2_SubPlots.py b/JNLS_plotScripts/Plot-Angle-GammaV2_SubPlots.py
similarity index 100%
rename from Python-Scripts/Plot-Angle-GammaV2_SubPlots.py
rename to JNLS_plotScripts/Plot-Angle-GammaV2_SubPlots.py
diff --git a/Python-Scripts/Plot-Angle-q3.py b/JNLS_plotScripts/Plot-Angle-q3.py
similarity index 100%
rename from Python-Scripts/Plot-Angle-q3.py
rename to JNLS_plotScripts/Plot-Angle-q3.py
diff --git a/Python-Scripts/Plot-AngleCurv-Alpha_intermediateGamma_SubPlots.py b/JNLS_plotScripts/Plot-AngleCurv-Alpha_intermediateGamma_SubPlots.py
similarity index 100%
rename from Python-Scripts/Plot-AngleCurv-Alpha_intermediateGamma_SubPlots.py
rename to JNLS_plotScripts/Plot-AngleCurv-Alpha_intermediateGamma_SubPlots.py
diff --git a/Python-Scripts/Plot-AngleCurvature-GammaV2_SubPlots.py b/JNLS_plotScripts/Plot-AngleCurvature-GammaV2_SubPlots.py
similarity index 100%
rename from Python-Scripts/Plot-AngleCurvature-GammaV2_SubPlots.py
rename to JNLS_plotScripts/Plot-AngleCurvature-GammaV2_SubPlots.py
diff --git a/Python-Scripts/Plot-Curvature-Alpha_intermediateGamma.py b/JNLS_plotScripts/Plot-Curvature-Alpha_intermediateGamma.py
similarity index 100%
rename from Python-Scripts/Plot-Curvature-Alpha_intermediateGamma.py
rename to JNLS_plotScripts/Plot-Curvature-Alpha_intermediateGamma.py
diff --git a/Python-Scripts/Plot-Curvature-Gamma.py b/JNLS_plotScripts/Plot-Curvature-Gamma.py
similarity index 100%
rename from Python-Scripts/Plot-Curvature-Gamma.py
rename to JNLS_plotScripts/Plot-Curvature-Gamma.py
diff --git a/Python-Scripts/Plot-Curvature-GammaV2.py b/JNLS_plotScripts/Plot-Curvature-GammaV2.py
similarity index 100%
rename from Python-Scripts/Plot-Curvature-GammaV2.py
rename to JNLS_plotScripts/Plot-Curvature-GammaV2.py
diff --git a/Python-Scripts/Plot-Curvature-GammaV2_SubPlots.py b/JNLS_plotScripts/Plot-Curvature-GammaV2_SubPlots.py
similarity index 100%
rename from Python-Scripts/Plot-Curvature-GammaV2_SubPlots.py
rename to JNLS_plotScripts/Plot-Curvature-GammaV2_SubPlots.py
diff --git a/Python-Scripts/Plot-Curvature-q3.py b/JNLS_plotScripts/Plot-Curvature-q3.py
similarity index 100%
rename from Python-Scripts/Plot-Curvature-q3.py
rename to JNLS_plotScripts/Plot-Curvature-q3.py
diff --git a/Python-Scripts/Plot-Energy_Axial.py b/JNLS_plotScripts/Plot-Energy_Axial.py
similarity index 100%
rename from Python-Scripts/Plot-Energy_Axial.py
rename to JNLS_plotScripts/Plot-Energy_Axial.py
diff --git a/Python-Scripts/Plot_Angle_Alpha.py b/JNLS_plotScripts/Plot_Angle_Alpha.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Alpha.py
rename to JNLS_plotScripts/Plot_Angle_Alpha.py
diff --git a/Python-Scripts/Plot_Angle_Lemma1.4-Backup.py b/JNLS_plotScripts/Plot_Angle_Lemma1.4-Backup.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Lemma1.4-Backup.py
rename to JNLS_plotScripts/Plot_Angle_Lemma1.4-Backup.py
diff --git a/Python-Scripts/Plot_Angle_Lemma1.4.py b/JNLS_plotScripts/Plot_Angle_Lemma1.4.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Lemma1.4.py
rename to JNLS_plotScripts/Plot_Angle_Lemma1.4.py
diff --git a/Python-Scripts/Plot_Angle_Lemma1.4V2.py b/JNLS_plotScripts/Plot_Angle_Lemma1.4V2.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Lemma1.4V2.py
rename to JNLS_plotScripts/Plot_Angle_Lemma1.4V2.py
diff --git a/Python-Scripts/Plot_Angle_Lemma1.4V3.py b/JNLS_plotScripts/Plot_Angle_Lemma1.4V3.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Lemma1.4V3.py
rename to JNLS_plotScripts/Plot_Angle_Lemma1.4V3.py
diff --git a/Python-Scripts/Plot_Angle_Lemma1.4V3_Transition.py b/JNLS_plotScripts/Plot_Angle_Lemma1.4V3_Transition.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Lemma1.4V3_Transition.py
rename to JNLS_plotScripts/Plot_Angle_Lemma1.4V3_Transition.py
diff --git a/Python-Scripts/Plot_Angle_Lemma1.4V3_Transition_Beta2.py b/JNLS_plotScripts/Plot_Angle_Lemma1.4V3_Transition_Beta2.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Lemma1.4V3_Transition_Beta2.py
rename to JNLS_plotScripts/Plot_Angle_Lemma1.4V3_Transition_Beta2.py
diff --git a/Python-Scripts/Plot_Angle_Lemma1.4_ChangeGamma.py b/JNLS_plotScripts/Plot_Angle_Lemma1.4_ChangeGamma.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Lemma1.4_ChangeGamma.py
rename to JNLS_plotScripts/Plot_Angle_Lemma1.4_ChangeGamma.py
diff --git a/Python-Scripts/Plot_Angle_Lemma1.4_subPlots.py b/JNLS_plotScripts/Plot_Angle_Lemma1.4_subPlots.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Lemma1.4_subPlots.py
rename to JNLS_plotScripts/Plot_Angle_Lemma1.4_subPlots.py
diff --git a/Python-Scripts/Plot_Angle_Theta.py b/JNLS_plotScripts/Plot_Angle_Theta.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Theta.py
rename to JNLS_plotScripts/Plot_Angle_Theta.py
diff --git a/Python-Scripts/Plot_Angle_Theta_intermediateGamma.py b/JNLS_plotScripts/Plot_Angle_Theta_intermediateGamma.py
similarity index 100%
rename from Python-Scripts/Plot_Angle_Theta_intermediateGamma.py
rename to JNLS_plotScripts/Plot_Angle_Theta_intermediateGamma.py
diff --git a/Python-Scripts/Plot_CurvatureLemma1.4.py b/JNLS_plotScripts/Plot_CurvatureLemma1.4.py
similarity index 100%
rename from Python-Scripts/Plot_CurvatureLemma1.4.py
rename to JNLS_plotScripts/Plot_CurvatureLemma1.4.py
diff --git a/Python-Scripts/Plot_CurvatureLemma1.4_alpha3.0.py b/JNLS_plotScripts/Plot_CurvatureLemma1.4_alpha3.0.py
similarity index 100%
rename from Python-Scripts/Plot_CurvatureLemma1.4_alpha3.0.py
rename to JNLS_plotScripts/Plot_CurvatureLemma1.4_alpha3.0.py
diff --git a/Python-Scripts/Plot_Curvature_Alpha.py b/JNLS_plotScripts/Plot_Curvature_Alpha.py
similarity index 100%
rename from Python-Scripts/Plot_Curvature_Alpha.py
rename to JNLS_plotScripts/Plot_Curvature_Alpha.py
diff --git a/Python-Scripts/Plot_Curvature_Lemma1.4V3.py b/JNLS_plotScripts/Plot_Curvature_Lemma1.4V3.py
similarity index 100%
rename from Python-Scripts/Plot_Curvature_Lemma1.4V3.py
rename to JNLS_plotScripts/Plot_Curvature_Lemma1.4V3.py
diff --git a/Python-Scripts/Plot_Curvature_TransitionArea.py b/JNLS_plotScripts/Plot_Curvature_TransitionArea.py
similarity index 100%
rename from Python-Scripts/Plot_Curvature_TransitionArea.py
rename to JNLS_plotScripts/Plot_Curvature_TransitionArea.py
diff --git a/Python-Scripts/Plot_Lemma1.4.py b/JNLS_plotScripts/Plot_Lemma1.4.py
similarity index 100%
rename from Python-Scripts/Plot_Lemma1.4.py
rename to JNLS_plotScripts/Plot_Lemma1.4.py
diff --git a/Python-Scripts/Plot_MinVec.py b/JNLS_plotScripts/Plot_MinVec.py
similarity index 100%
rename from Python-Scripts/Plot_MinVec.py
rename to JNLS_plotScripts/Plot_MinVec.py
diff --git a/Python-Scripts/Plot_MinVec_v2.py b/JNLS_plotScripts/Plot_MinVec_v2.py
similarity index 100%
rename from Python-Scripts/Plot_MinVec_v2.py
rename to JNLS_plotScripts/Plot_MinVec_v2.py
diff --git a/Python-Scripts/Plot_Prestrain_Lemma1.4.py b/JNLS_plotScripts/Plot_Prestrain_Lemma1.4.py
similarity index 100%
rename from Python-Scripts/Plot_Prestrain_Lemma1.4.py
rename to JNLS_plotScripts/Plot_Prestrain_Lemma1.4.py
diff --git a/Python-Scripts/Plot_Prestrain_Lemma1.4_Betas.py b/JNLS_plotScripts/Plot_Prestrain_Lemma1.4_Betas.py
similarity index 100%
rename from Python-Scripts/Plot_Prestrain_Lemma1.4_Betas.py
rename to JNLS_plotScripts/Plot_Prestrain_Lemma1.4_Betas.py
diff --git a/Python-Scripts/Plot_Prestrain_Lemma1.4_SubPlots.py b/JNLS_plotScripts/Plot_Prestrain_Lemma1.4_SubPlots.py
similarity index 100%
rename from Python-Scripts/Plot_Prestrain_Lemma1.4_SubPlots.py
rename to JNLS_plotScripts/Plot_Prestrain_Lemma1.4_SubPlots.py
diff --git a/Python-Scripts/Plot_aStar.py b/JNLS_plotScripts/Plot_aStar.py
similarity index 100%
rename from Python-Scripts/Plot_aStar.py
rename to JNLS_plotScripts/Plot_aStar.py
diff --git a/Python-Scripts/Plot_aStar_elliptic.py b/JNLS_plotScripts/Plot_aStar_elliptic.py
similarity index 100%
rename from Python-Scripts/Plot_aStar_elliptic.py
rename to JNLS_plotScripts/Plot_aStar_elliptic.py
diff --git a/Python-Scripts/Plot_aStar_hyperbolic.py b/JNLS_plotScripts/Plot_aStar_hyperbolic.py
similarity index 100%
rename from Python-Scripts/Plot_aStar_hyperbolic.py
rename to JNLS_plotScripts/Plot_aStar_hyperbolic.py
diff --git a/Python-Scripts/Plot_elasticQuantities.py b/JNLS_plotScripts/Plot_elasticQuantities.py
similarity index 100%
rename from Python-Scripts/Plot_elasticQuantities.py
rename to JNLS_plotScripts/Plot_elasticQuantities.py
diff --git a/Python-Scripts/Plotq12.py b/JNLS_plotScripts/Plotq12.py
similarity index 100%
rename from Python-Scripts/Plotq12.py
rename to JNLS_plotScripts/Plotq12.py
diff --git a/Python-Scripts/TestAngle.py b/JNLS_plotScripts/TestAngle.py
similarity index 100%
rename from Python-Scripts/TestAngle.py
rename to JNLS_plotScripts/TestAngle.py
diff --git a/Python-Scripts/makePlot.py b/JNLS_plotScripts/makePlot.py
similarity index 100%
rename from Python-Scripts/makePlot.py
rename to JNLS_plotScripts/makePlot.py
diff --git a/Python-Scripts/makePlotmuGamma.py b/JNLS_plotScripts/makePlotmuGamma.py
similarity index 100%
rename from Python-Scripts/makePlotmuGamma.py
rename to JNLS_plotScripts/makePlotmuGamma.py
diff --git a/Python-Scripts/mayHavetoBein_src-Folder.txt b/JNLS_plotScripts/mayHavetoBein_src-Folder.txt
similarity index 100%
rename from Python-Scripts/mayHavetoBein_src-Folder.txt
rename to JNLS_plotScripts/mayHavetoBein_src-Folder.txt
diff --git a/Python-Scripts/plot-q3-gamma.py b/JNLS_plotScripts/plot-q3-gamma.py
similarity index 100%
rename from Python-Scripts/plot-q3-gamma.py
rename to JNLS_plotScripts/plot-q3-gamma.py
diff --git a/Python-Scripts/plot_Elastic_and_PrestrainRatio.py b/JNLS_plotScripts/plot_Elastic_and_PrestrainRatio.py
similarity index 100%
rename from Python-Scripts/plot_Elastic_and_PrestrainRatio.py
rename to JNLS_plotScripts/plot_Elastic_and_PrestrainRatio.py
diff --git a/Plot-Scripts/WoodBilayer_expComparison_r022.py b/Plot-Scripts/WoodBilayer_expComparison_r022.py
new file mode 100644
index 0000000000000000000000000000000000000000..f09281bfe4018346f1f5f7cf94466297dfa5bf87
--- /dev/null
+++ b/Plot-Scripts/WoodBilayer_expComparison_r022.py
@@ -0,0 +1,134 @@
+import numpy as np
+import matplotlib.pyplot as plt
+import math
+import os
+import subprocess
+import fileinput
+import re
+import sys
+import matplotlib as mpl
+from mpl_toolkits.mplot3d import Axes3D
+import matplotlib.cm as cm
+import matplotlib.ticker as ticker
+from matplotlib.ticker import MultipleLocator,FormatStrFormatter,MaxNLocator
+import seaborn as sns
+import matplotlib.colors as mcolors
+# ----------------------------------------------------
+# --- Define Plot style:
+# plt.style.use("seaborn-white")
+# plt.style.use("seaborn-pastel")
+# plt.style.use("seaborn-colorblind")
+plt.style.use("seaborn")
+mpl.rcParams['text.usetex'] = True
+mpl.rcParams["font.family"] = "serif"
+mpl.rcParams["font.size"] = "14"
+mpl.rcParams['xtick.bottom'] = True
+mpl.rcParams['xtick.major.size'] = 3
+mpl.rcParams['xtick.minor.size'] = 1.5
+mpl.rcParams['xtick.major.width'] = 0.75
+mpl.rcParams['ytick.left'] = True
+mpl.rcParams['ytick.major.size'] = 3
+mpl.rcParams['ytick.minor.size'] = 1.5
+mpl.rcParams['ytick.major.width'] = 0.75
+
+#Adjust grid:
+mpl.rcParams.update({"axes.grid" : True}) # Add grid
+mpl.rcParams['axes.labelpad'] = 3
+mpl.rcParams['grid.linewidth'] = 0.25
+mpl.rcParams['grid.alpha'] = 0.9 # 0.75
+mpl.rcParams['grid.linestyle'] = '-'
+mpl.rcParams['grid.color'] = 'gray'#'black'
+mpl.rcParams['text.latex.preamble'] = r'\usepackage{amsfonts}' # Makes Use of \mathbb possible.
+# ----------------------------------------------------------------------------------------
+width = 5.79
+height = width / 1.618 # The golden ratio.
+
+# fig = plt.figure() #main
+fig, ax = plt.subplots(figsize=(width,height))
+
+
+
+
+
+input = [14.72680026, 13.64338887, 12.41305478, 11.66482931, 11.09781471, 9.435795985, 8.959564147] #moisture-content (in %)
+
+
+kappa_sim = [1.20401338 , 1.72575251, 2.28762542 , 2.64882943 , 2.92976589 , 3.73244147 , 3.93311037 ] #kappa from Simulation
+kappa_exp = [1.058078122,1.544624544, 2.317033799, 2.686043143, 2.967694189, 3.913528418, 4.262750825] #kappa from Experiment
+
+# compute difference:
+relative_error = (np.array(kappa_sim) - np.array(kappa_exp)) / np.array(kappa_exp)
+print('relative_error:', relative_error)
+
+
+# --------------- Plot Lines + Scatter -----------------------
+line_1 = ax.plot(input, kappa_sim, # data
+ # color='forestgreen', # linecolor
+ marker='D', # each marker will be rendered as a circle
+ markersize=5, # marker size
+ # markerfacecolor='darkorange', # marker facecolor
+ markeredgecolor='black', # marker edgecolor
+ markeredgewidth=0.75, # marker edge width
+ # linestyle='dashdot', # line style will be dash line
+ linewidth=1.5, # line width
+ zorder=3,
+ label = r"$\kappa_{sim}$")
+
+line_2 = ax.plot(input, kappa_exp, # data
+ # color='orangered', # linecolor
+ marker='o', # each marker will be rendered as a circle
+ markersize=5, # marker size
+ # markerfacecolor='cornflowerblue', # marker facecolor
+ markeredgecolor='black', # marker edgecolor
+ markeredgewidth=0.75, # marker edge width
+ # linestyle='--', # line style will be dash line
+ linewidth=1.5, # line width
+ zorder=3,
+ alpha=0.8, # Change opacity
+ label = r"$\kappa_{exp}$")
+
+# --- Plot order line
+# x = np.linspace(0.01,1/2,100)
+# y = CC_L2[0]*x**2
+# OrderLine = ax.plot(x,y,linestyle='--', label=r"$\mathcal{O}(h)$")
+
+
+
+# Fix_value = 7.674124
+# l3 = plt.axhline(y = Fix_value, color = 'black', linewidth=0.75, linestyle = 'dashed')
+# --------------- Set Axes -----------------------
+ax.set_title(r"ratio $r = 0.22$") # Plot - Title
+# plt.xscale('log') # Use Logarithmic-Scale
+# plt.yscale('log')
+ax.set_xlabel(r"Wood moisture content $\omega (\%)$", labelpad=4)
+ax.set_ylabel(r"Curvature $\kappa$", labelpad=4)
+plt.tight_layout()
+
+# # --- Set Line labels
+# line_labels = [r"$CC_{L_2}$",r"$CC_{H_1}$", r"$\mathcal{O}(h)$"]
+
+# --- Set Legend
+legend = ax.legend()
+# legend = fig.legend([line_1 , line_2, OrderLine],
+# labels = line_labels,
+# bbox_to_anchor=[0.97, 0.50],
+# # bbox_to_anchor=[0.97, 0.53],
+# # loc='center',
+# ncol=1, # Number of columns used for legend
+# # borderaxespad=0.15, # Small spacing around legend box
+# frameon=True,
+# prop={'size': 10})
+
+
+frame = legend.get_frame()
+frame.set_edgecolor('black')
+
+
+# --- Adjust left/right spacing:
+# plt.subplots_adjust(right=0.81)
+# plt.subplots_adjust(left=0.11)
+
+# ---------- Output Figure as pdf:
+fig.set_size_inches(width, height)
+fig.savefig('WoodBilayer_expComparison.pdf')
+# plt.show()
\ No newline at end of file
diff --git a/Plot-Scripts/WoodBilayer_expComparison_r049.py b/Plot-Scripts/WoodBilayer_expComparison_r049.py
new file mode 100644
index 0000000000000000000000000000000000000000..f09281bfe4018346f1f5f7cf94466297dfa5bf87
--- /dev/null
+++ b/Plot-Scripts/WoodBilayer_expComparison_r049.py
@@ -0,0 +1,134 @@
+import numpy as np
+import matplotlib.pyplot as plt
+import math
+import os
+import subprocess
+import fileinput
+import re
+import sys
+import matplotlib as mpl
+from mpl_toolkits.mplot3d import Axes3D
+import matplotlib.cm as cm
+import matplotlib.ticker as ticker
+from matplotlib.ticker import MultipleLocator,FormatStrFormatter,MaxNLocator
+import seaborn as sns
+import matplotlib.colors as mcolors
+# ----------------------------------------------------
+# --- Define Plot style:
+# plt.style.use("seaborn-white")
+# plt.style.use("seaborn-pastel")
+# plt.style.use("seaborn-colorblind")
+plt.style.use("seaborn")
+mpl.rcParams['text.usetex'] = True
+mpl.rcParams["font.family"] = "serif"
+mpl.rcParams["font.size"] = "14"
+mpl.rcParams['xtick.bottom'] = True
+mpl.rcParams['xtick.major.size'] = 3
+mpl.rcParams['xtick.minor.size'] = 1.5
+mpl.rcParams['xtick.major.width'] = 0.75
+mpl.rcParams['ytick.left'] = True
+mpl.rcParams['ytick.major.size'] = 3
+mpl.rcParams['ytick.minor.size'] = 1.5
+mpl.rcParams['ytick.major.width'] = 0.75
+
+#Adjust grid:
+mpl.rcParams.update({"axes.grid" : True}) # Add grid
+mpl.rcParams['axes.labelpad'] = 3
+mpl.rcParams['grid.linewidth'] = 0.25
+mpl.rcParams['grid.alpha'] = 0.9 # 0.75
+mpl.rcParams['grid.linestyle'] = '-'
+mpl.rcParams['grid.color'] = 'gray'#'black'
+mpl.rcParams['text.latex.preamble'] = r'\usepackage{amsfonts}' # Makes Use of \mathbb possible.
+# ----------------------------------------------------------------------------------------
+width = 5.79
+height = width / 1.618 # The golden ratio.
+
+# fig = plt.figure() #main
+fig, ax = plt.subplots(figsize=(width,height))
+
+
+
+
+
+input = [14.72680026, 13.64338887, 12.41305478, 11.66482931, 11.09781471, 9.435795985, 8.959564147] #moisture-content (in %)
+
+
+kappa_sim = [1.20401338 , 1.72575251, 2.28762542 , 2.64882943 , 2.92976589 , 3.73244147 , 3.93311037 ] #kappa from Simulation
+kappa_exp = [1.058078122,1.544624544, 2.317033799, 2.686043143, 2.967694189, 3.913528418, 4.262750825] #kappa from Experiment
+
+# compute difference:
+relative_error = (np.array(kappa_sim) - np.array(kappa_exp)) / np.array(kappa_exp)
+print('relative_error:', relative_error)
+
+
+# --------------- Plot Lines + Scatter -----------------------
+line_1 = ax.plot(input, kappa_sim, # data
+ # color='forestgreen', # linecolor
+ marker='D', # each marker will be rendered as a circle
+ markersize=5, # marker size
+ # markerfacecolor='darkorange', # marker facecolor
+ markeredgecolor='black', # marker edgecolor
+ markeredgewidth=0.75, # marker edge width
+ # linestyle='dashdot', # line style will be dash line
+ linewidth=1.5, # line width
+ zorder=3,
+ label = r"$\kappa_{sim}$")
+
+line_2 = ax.plot(input, kappa_exp, # data
+ # color='orangered', # linecolor
+ marker='o', # each marker will be rendered as a circle
+ markersize=5, # marker size
+ # markerfacecolor='cornflowerblue', # marker facecolor
+ markeredgecolor='black', # marker edgecolor
+ markeredgewidth=0.75, # marker edge width
+ # linestyle='--', # line style will be dash line
+ linewidth=1.5, # line width
+ zorder=3,
+ alpha=0.8, # Change opacity
+ label = r"$\kappa_{exp}$")
+
+# --- Plot order line
+# x = np.linspace(0.01,1/2,100)
+# y = CC_L2[0]*x**2
+# OrderLine = ax.plot(x,y,linestyle='--', label=r"$\mathcal{O}(h)$")
+
+
+
+# Fix_value = 7.674124
+# l3 = plt.axhline(y = Fix_value, color = 'black', linewidth=0.75, linestyle = 'dashed')
+# --------------- Set Axes -----------------------
+ax.set_title(r"ratio $r = 0.22$") # Plot - Title
+# plt.xscale('log') # Use Logarithmic-Scale
+# plt.yscale('log')
+ax.set_xlabel(r"Wood moisture content $\omega (\%)$", labelpad=4)
+ax.set_ylabel(r"Curvature $\kappa$", labelpad=4)
+plt.tight_layout()
+
+# # --- Set Line labels
+# line_labels = [r"$CC_{L_2}$",r"$CC_{H_1}$", r"$\mathcal{O}(h)$"]
+
+# --- Set Legend
+legend = ax.legend()
+# legend = fig.legend([line_1 , line_2, OrderLine],
+# labels = line_labels,
+# bbox_to_anchor=[0.97, 0.50],
+# # bbox_to_anchor=[0.97, 0.53],
+# # loc='center',
+# ncol=1, # Number of columns used for legend
+# # borderaxespad=0.15, # Small spacing around legend box
+# frameon=True,
+# prop={'size': 10})
+
+
+frame = legend.get_frame()
+frame.set_edgecolor('black')
+
+
+# --- Adjust left/right spacing:
+# plt.subplots_adjust(right=0.81)
+# plt.subplots_adjust(left=0.11)
+
+# ---------- Output Figure as pdf:
+fig.set_size_inches(width, height)
+fig.savefig('WoodBilayer_expComparison.pdf')
+# plt.show()
\ No newline at end of file
diff --git a/Python-Scripts/__pycache__/ClassifyMin.cpython-38.pyc b/Python-Scripts/__pycache__/ClassifyMin.cpython-38.pyc
deleted file mode 100644
index 588d82e76cfa64b60a3158f3ab84679eda54131d..0000000000000000000000000000000000000000
Binary files a/Python-Scripts/__pycache__/ClassifyMin.cpython-38.pyc and /dev/null differ
diff --git a/Python-Scripts/__pycache__/ClassifyMin_New.cpython-38.pyc b/Python-Scripts/__pycache__/ClassifyMin_New.cpython-38.pyc
deleted file mode 100644
index c6e5985e988a2eb68b596d46a456974b7dbf7dce..0000000000000000000000000000000000000000
Binary files a/Python-Scripts/__pycache__/ClassifyMin_New.cpython-38.pyc and /dev/null differ
diff --git a/Python-Scripts/__pycache__/HelperFunctions.cpython-38.pyc b/Python-Scripts/__pycache__/HelperFunctions.cpython-38.pyc
deleted file mode 100644
index 2140cfdf8163d50eff6aae3134bf805f79d594f3..0000000000000000000000000000000000000000
Binary files a/Python-Scripts/__pycache__/HelperFunctions.cpython-38.pyc and /dev/null differ