diff --git a/.gitignore b/.gitignore
index c396f52d20df9ada99c0a9f03df8b42d64b5b26b..7081ba7543047065e8aa31a3fe641a2acfc7d4ff 100644
--- a/.gitignore
+++ b/.gitignore
@@ -17,6 +17,10 @@ build/
*.vtu
+#ignore output folders
+/outputs_*/
+/results_*/
+
# ignore png
*.png
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 391288b61890af50b02c52001a2ae1b1bad93ece..2c7707a3e5a6578f71828867e2beb4dce244ced2 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -7,27 +7,32 @@ before_script: &before
- duneci-install-module https://gitlab.dune-project.org/fufem/dune-matrix-vector.git
- duneci-install-module https://git.imp.fu-berlin.de/agnumpde/dune-solvers.git
- duneci-install-module https://gitlab.dune-project.org/extensions/dune-vtk.git
- - duneci-install-module https://gitlab.dune-project.org/klaus.boehnlein/dune-functions.git --branch bugfix/reducedcubichermite-local
- duneci-install-module https://gitlab.dune-project.org/fufem/dune-fufem.git
- - duneci-install-module https://gitlab.mn.tu-dresden.de/osander/dune-gfe.git --branch feature/bendingIsometries
- - duneci-install-module https://gitlab.mn.tu-dresden.de/ag-sander/dune/dune-elasticity.git --branch releases/2.9
+ - duneci-install-module https://gitlab.dune-project.org/extensions/dune-gmsh4
+ - duneci-install-module https://gitlab.mn.tu-dresden.de/osander/dune-gfe.git
-dune:2.9 debian-11 gcc-10 C++20:
+
+# Tests with the 2.10 release. That's the one in Debian trixie
+#--------------------------------------------------------------------
+dune:2.10 gcc-10:
+ image: registry.dune-project.org/docker/ci/dune:2.10-debian-11-gcc-10-20
variables:
- DUNECI_BRANCH: releases/2.9
- image: registry.dune-project.org/docker/ci/dune:2.9-debian-11-gcc-10-20
+ DUNECI_BRANCH: releases/2.10
before_script:
- *before
script: duneci-standard-test
-dune:git ubuntu-20-04 clang-10 C++20:
- image: registry.dune-project.org/docker/ci/dune:git-ubuntu-20.04-clang-10-20
+# Tests with the git master branch
+# Some, but not all optional dependencies are made available.
+#------------------------------------------------------------------
+dune:git gcc-10 C++20:
+ image: registry.dune-project.org/docker/ci/dune:git-debian-11-gcc-10-20
before_script:
- *before
script: duneci-standard-test
-dune:git debian-11 gcc-10 C++20:
- image: registry.dune-project.org/docker/ci/dune:git-debian-11-gcc-10-20
+dune:git clang-11 C++20:
+ image: registry.dune-project.org/docker/ci/dune:git-debian-11-clang-11-20
before_script:
- *before
- script: duneci-standard-test
+ script: duneci-standard-test
\ No newline at end of file
diff --git a/Plot-Scripts/IndicatorFunctionVisualization.py b/Plot-Scripts/IndicatorFunctionVisualization.py
new file mode 100644
index 0000000000000000000000000000000000000000..8ef7238df906c58b961bf3a93cd72073e53c51ba
--- /dev/null
+++ b/Plot-Scripts/IndicatorFunctionVisualization.py
@@ -0,0 +1,141 @@
+import numpy as np
+import matplotlib.pyplot as plt
+
+
+
+x_1 = 0.5;
+a = (1-x_1)*(2-np.sqrt(3))/2
+b = x_1 * (2-np.sqrt(3))/2
+
+
+theta=0.2
+alpha = np.pi/3.0
+
+def one_norm(X,Y):
+ return np.abs(X) + np.abs(Y)
+
+def two_norm(X,Y):
+ return np.sqrt(X**2 + Y**2)
+
+def infinity_norm(X,Y):
+ return np.maximum(np.abs(X),np.abs(Y))
+ # return np.linalg.norm([X,Y])
+
+def euclidean_distance(A,B):
+ return two_norm(A[0]-B[0],A[1]-B[1])
+
+def one_norm_distance(A,B):
+ return one_norm(A[0]-B[0],A[1]-B[1])
+
+def infinity_norm_distance(A,B):
+ return infinity_norm(A[0]-B[0],A[1]-B[1])
+
+# Rumpf Example
+def indicatorFunction(X,Y):
+
+ # Rumpf example.
+ # tmp_1 = (one_norm(X,Y) < 1+ (b/2) )
+ # tmp_2 = ((1-(b/2)) < one_norm(X,Y))
+ # tmp_3 = (one_norm(X-1,Y) < 1+ (b/2) )
+ # tmp_4 = ((1-(b/2)) < one_norm(X-1,Y))
+ # tmp_5 = (X < (a/2.0))
+ # tmp_6 = (X > (1-(a/2.0)))
+ # tmp_7 = (Y < (a/2.0))
+ # tmp_8 = (Y > (1-(a/2.0)))
+ # out_tmp1 = np.logical_or(np.logical_and(tmp_1,tmp_2),np.logical_and(tmp_3,tmp_4))
+ # out_tmp2 = np.logical_or(np.logical_or(tmp_5,tmp_6),np.logical_or(tmp_7,tmp_8))
+ # out = np.logical_or(out_tmp1, out_tmp2)
+
+ # abs(-np.cos(self.alpha)*x[0] + np.cos(self.alpha)*x[1] ) < self.theta and x[2] >= 0 )
+ # out = abs(-np.cos(alpha)*X + np.sin(alpha)*Y)< theta
+
+
+ """
+ indicator function for circles centered at midpoint and corner points.
+ """
+ theta=0.1
+ # define nodes
+ node1 = [-0.5,-0.5]
+ node2 = [0.5,-0.5]
+ node3 = [-0.5,0.5]
+ node4 = [0.5,0.5]
+ center = [0,0]
+
+ tmp_1 = euclidean_distance([X,Y],node1) < theta
+ out = tmp_1
+
+ return out
+
+
+#------------------------------------------------------------
+
+
+
+# Define range for x and y. Domain: (0,1)^2
+# x = np.linspace(0, 1, 100)
+# y = np.linspace(0, 1, 100)
+
+# Define range for x and y. Domain: (-0.5,0.5)^2
+x = np.linspace(-0.5, 0.5, 100)
+y = np.linspace(-0.5, 0.5, 100)
+
+
+
+
+# Create meshgrid
+X, Y = np.meshgrid(x, y)
+
+# Define the function y = x
+Z = Y - X
+
+
+W = indicatorFunction(X,Y)
+
+
+# print('Test:', one_norm(0.6,0) )
+# print('Test:', indicatorFunction(0.6,0) )
+
+
+# Plot the meshgrid
+plt.figure(figsize=(8, 6))
+# plt.contourf(X, Y, Z, levels=[-np.inf, 0], colors=['orange'], alpha=0.5)
+plt.contour(X, Y, Z, levels=[0], colors=['black'])
+# plt.contourf(X, Y, Z, levels=[1e-12, np.inf], colors=['royalblue'], alpha=0.25)
+
+# Color points below the line y=x as orange, and others as blue
+# plt.scatter(X[Z < 0], Y[Z < 0], color='orange', label='Below y=x')
+
+
+plt.scatter(X[W], Y[W], color='green', label='Below y=x' , alpha=0.5)
+# plt.contourf(X, Y, W, levels=[1,1e2], colors=['green'], alpha=0.25)
+# plt.scatter(X[Z < 0], Y[Z < 0], color='orange', label='Below y=x')
+# plt.scatter(X[Z >= 0], Y[Z >= 0], color='blue', label='Above or on y=x')
+
+
+# Color points whose x-values are below 0.25 or above 0.75 in red
+# plt.scatter(X[(X < (a/2.0)) | (X > (1-(a/2.0)))], Y[(X < (a/2.0)) | (X > (1-(a/2.0)))], color='red', label='x < 0.25 or x > 0.75')
+# plt.scatter(X[(Y < (a/2.0)) | (Y > (1-(a/2.0)))], Y[(Y < (a/2.0)) | (Y > (1-(a/2.0)))], color='red', label='y < 0.25 or y > 0.75')
+
+
+
+# tmp = one_norm(X-1,Y)
+
+
+# idx = ((b/np.sqrt(2))*one_norm(X-1,Y) )<1 | (Y < (a/2.0)) | (Y > (1-(a/2.0)))
+
+# idx = Y < (a/2.0) or (Y > (1-(a/2.0)))
+
+# plt.scatter(X[(Y < (a/2.0)) | (Y > (1-(a/2.0)))], Y[(Y < (a/2.0)) | (Y > (1-(a/2.0)))], color='red', label='y < 0.25 or y > 0.75')
+
+# plt.scatter(X[1-((b/np.sqrt(2))*one_norm(X-1,Y) )< 1 + (b/np.sqrt(2)) | 1 - (b/np.sqrt(2))*one_norm(X,Y) < 1 + (b/np.sqrt(2)) | (Y < (a/2.0)) | (Y > (1-(a/2.0)))], Y[1-((b/np.sqrt(2))*one_norm(X-1,Y) )< 1 + (b/np.sqrt(2)) | 1 - (b/np.sqrt(2))*one_norm(X,Y) < 1 + (b/np.sqrt(2)) | (Y < (a/2.0)) | (Y > (1-(a/2.0)))], color='red', label='y < 0.25 or y > 0.75')
+
+
+# plt.scatter(X[idx], Y[idx], color='red', label='y < 0.25 or y > 0.75')
+
+plt.xlabel('X')
+plt.ylabel('Y')
+plt.title('Meshgrid with points colored based on y=x')
+plt.legend()
+plt.grid(True)
+plt.axis('equal')
+plt.show()
diff --git a/Plot-Scripts/MacroMicrostructurePlot.py b/Plot-Scripts/MacroMicrostructurePlot.py
new file mode 100644
index 0000000000000000000000000000000000000000..a3f7f175bb4b08ff4f0a3912c0e7b5a5b8a87fb5
--- /dev/null
+++ b/Plot-Scripts/MacroMicrostructurePlot.py
@@ -0,0 +1,586 @@
+import os
+import sys
+import re
+import codecs
+import math
+import numpy as np
+import matplotlib.pyplot as plt
+from matplotlib.patches import Rectangle
+
+
+"""
+ This script allows to plot a microstructure (that may varies on a macroscopic scale)
+ on a macroscopic domain discretized into "grain regions".
+
+"""
+
+def one_norm(X,Y):
+ return np.abs(X) + np.abs(Y)
+
+def two_norm(X,Y):
+ return np.sqrt(X**2 + Y**2)
+
+def infinity_norm(X,Y):
+ return np.maximum(np.abs(X),np.abs(Y))
+ # return np.linalg.norm([X,Y])
+
+def euclidean_distance(A,B):
+ return two_norm(A[0]-B[0],A[1]-B[1])
+
+def one_norm_distance(A,B):
+ return one_norm(A[0]-B[0],A[1]-B[1])
+
+def infinity_norm_distance(A,B):
+ return infinity_norm(A[0]-B[0],A[1]-B[1])
+
+
+resultPath = '/home/klaus/Desktop'
+textwidth = 6.26894 # textwidth in inch
+width = textwidth * 0.5
+# width = textwidth * 0.33
+height = textwidth/1.618 # The golden ratio.
+
+
+# Domain and grain parameters
+x_length = 2
+y_length = 1
+n = 2000
+num_grains_x = 12
+num_grains_y = 6
+grain_size_x = x_length / num_grains_x
+grain_size_y = y_length / num_grains_y
+
+offset = 0.0 # Displacement along normal vector direction
+
+theta = 0.1 # Stripe width
+alpha_degrees = 0 # Line angle
+
+# alpha_start = np.pi/12.0
+# alpha_target = np.pi/3.0
+
+alpha_start = (np.pi/2.0) - np.pi/12.0
+alpha_target = (np.pi/2.0) - np.pi/3.0
+
+theta_start = 0.2
+theta_target = 0.4
+
+
+#
+
+""""
+ Variation of angle and Width:
+ angle grows in y-direction
+ fibre width grows in x-direction
+"""
+# angles = np.linspace(alpha_start,alpha_target,num_grains_y) # alpha changing in y-direction
+angles = np.linspace(alpha_start,alpha_target,num_grains_x) # alpha changing in x-direction
+thetas = np.linspace(theta_start,theta_target,num_grains_x)
+
+# Moon
+t_start = 0.0
+t_target = 1.1
+t = np.linspace(t_start,t_target,num_grains_x)
+
+
+# Cross
+cdistance_start = 0.0
+cdistance_target = 0.3
+cdistance = np.linspace(cdistance_start,cdistance_target,num_grains_x)
+
+
+#use fixed theta:
+theta_fix = 0.15
+thetas = np.ones(num_grains_x) * theta_fix
+
+#use fixed angle:
+alpha_fix = 0.0
+angles = np.ones(num_grains_x) * alpha_fix
+# print('thetas:', thetas)
+
+# angles = [0.0,np.pi/4.0,np.pi/3.0,np.pi/2.0]
+
+# Convert angle to radians
+alpha = np.deg2rad(alpha_degrees)
+
+
+
+
+def distance_to_line(x, y, alpha , offset):
+ """Minimum distance from point (x,y) to offset center line
+
+ Mathematical Basis:
+ 1. Line Representation: (x,y) = t*(cosθ, sinθ) + offset*n̂
+ where n̂ = (-sinθ, cosθ) is the unit normal vector
+ 2. Distance Formula: |n·(p - p₀)| where p₀ is offset point
+ 3. Simplified Form: |-sinθ*x + cosθ*y - offset|
+ """
+ # return np.abs(-np.sin(alpha)*x + np.cos(alpha)*y - offset)
+ return np.abs(-np.cos(alpha)*x + np.sin(alpha)*y - offset)
+
+
+
+# Create figure and axes explicitly
+fig, ax = plt.subplots(figsize=(width,height))
+
+# Create grid and initialize indicator
+x = np.linspace(0, x_length, n)
+y = np.linspace(0, y_length, n)
+X, Y = np.meshgrid(x, y)
+indicator = np.zeros_like(X)
+
+for i in range(num_grains_x):
+ for j in range(num_grains_y):
+ # Grain boundaries
+ x_min, x_max = i*grain_size_x, (i+1)*grain_size_x
+ y_min, y_max = j*grain_size_y, (j+1)*grain_size_y
+
+ # Find points within current grain
+ in_grain = (X >= x_min) & (X < x_max) & (Y >= y_min) & (Y < y_max)
+
+ # Corrected coordinate normalization to local domain (-0,5,0.5)^2
+ X_local = (X[in_grain] - x_min)/grain_size_x - 0.5
+ Y_local = (Y[in_grain] - y_min)/grain_size_y - 0.5
+
+ #Angle depending on macro-point
+ # alpha = angles[j] # alpha changing in y-direction
+ alpha = angles[i] # alpha changing in x-direction
+ theta = thetas[i]
+ # print('alpha:', alpha)
+ # print('theta:', theta)
+
+
+ """
+ indicator function for (alpha) rotated Fibres with width theta
+ """
+ # Calculate distances to offset line
+ # distances = distance_to_line(X_local, Y_local, alpha, offset)
+ # indicator[in_grain] = np.where(distances <= theta/2.0, 1, 0)
+
+
+
+
+ # define nodes
+ node1 = [-0.5,-0.5]
+ node2 = [0.5,-0.5]
+ node3 = [-0.5,0.5]
+ node4 = [0.5,0.5]
+ center = [0,0]
+
+ """
+ indicator function for circles centered at midpoint and corner points.
+ """
+ # tmp_1 = euclidean_distance([X_local,Y_local],node1) < theta
+ # tmp_2 = euclidean_distance([X_local,Y_local],node2) < theta
+ # tmp_3 = euclidean_distance([X_local,Y_local],node3) < theta
+ # tmp_4 = euclidean_distance([X_local,Y_local],node4) < theta
+ # tmp_5 = euclidean_distance([X_local,Y_local],center) < theta
+ # boolQuantity = np.logical_or(tmp_1, np.logical_or(tmp_2, np.logical_or(tmp_3,np.logical_or(tmp_4,tmp_5))))
+ # indicator[in_grain] = np.where(boolQuantity==True, 1, 0)
+
+ """
+ indicator function for diamonds (one-norm) centered at midpoint and corner points.
+ """
+ # tmp_1 = one_norm_distance([X_local,Y_local],node1) < theta
+ # tmp_2 = one_norm_distance([X_local,Y_local],node2) < theta
+ # tmp_3 = one_norm_distance([X_local,Y_local],node3) < theta
+ # tmp_4 = one_norm_distance([X_local,Y_local],node4) < theta
+ # tmp_5 = one_norm_distance([X_local,Y_local],center) < theta
+ # boolQuantity = np.logical_or(tmp_1, np.logical_or(tmp_2, np.logical_or(tmp_3,np.logical_or(tmp_4,tmp_5))))
+ # indicator[in_grain] = np.where(boolQuantity==True, 1, 0)
+
+
+ """
+ indicator function for squares (inifnity-norm) centered at midpoint and corner points.
+ """
+ # tmp_1 = infinity_norm_distance([X_local,Y_local],node1) < theta
+ # tmp_2 = infinity_norm_distance([X_local,Y_local],node2) < theta
+ # tmp_3 = infinity_norm_distance([X_local,Y_local],node3) < theta
+ # tmp_4 = infinity_norm_distance([X_local,Y_local],node4) < theta
+ # tmp_5 = infinity_norm_distance([X_local,Y_local],center) < theta
+ # boolQuantity = np.logical_or(tmp_1, np.logical_or(tmp_2, np.logical_or(tmp_3,np.logical_or(tmp_4,tmp_5))))
+ # indicator[in_grain] = np.where(boolQuantity==True, 1, 0)
+
+
+
+ """
+ indicator function for stars
+ """
+ # tmp_1 = euclidean_distance([X_local,Y_local],node1) > theta
+ # tmp_2 = euclidean_distance([X_local,Y_local],node2) > theta
+ # tmp_3 = euclidean_distance([X_local,Y_local],node3) > theta
+ # tmp_4 = euclidean_distance([X_local,Y_local],node4) > theta
+ # boolQuantity = np.logical_and(tmp_1, np.logical_and(tmp_2, np.logical_and(tmp_3,tmp_4)))
+ # indicator[in_grain] = np.where(boolQuantity==True, 1, 0)
+
+
+
+ """
+ indicator function for Circles
+ """
+ # outerDiam = 0.4
+ # tmp_1 = euclidean_distance([X_local,Y_local],center) < outerDiam
+ # tmp_2 = euclidean_distance([X_local,Y_local],center) > theta
+ # # tmp_1 = euclidean_distance([X_local,Y_local],node1) > theta
+ # # tmp_2 = euclidean_distance([X_local,Y_local],node2) > theta
+ # # tmp_3 = euclidean_distance([X_local,Y_local],node3) > theta
+ # # tmp_4 = euclidean_distance([X_local,Y_local],node4) > theta
+ # # boolQuantity = np.logical_and(tmp_1, np.logical_and(tmp_2, np.logical_and(tmp_3,tmp_4)))
+ # boolQuantity = np.logical_and(tmp_1, tmp_2)
+ # indicator[in_grain] = np.where(boolQuantity==True, 1, 0)
+
+
+ """
+ indicator function for rising Sun
+ """
+ # # midpoint = node1 + t[i] * (np.array(node4)-np.array(node1))
+ # midpoint = [-0.5,0] + t[i] * (np.array([0.5,0])-np.array([-0.5,0]))
+
+ # tmp_1 = euclidean_distance([X_local,Y_local],midpoint) < theta
+ # # tmp_2 = euclidean_distance([X_local,Y_local],center) > theta
+ # # tmp_1 = euclidean_distance([X_local,Y_local],node1) > theta
+ # # tmp_2 = euclidean_distance([X_local,Y_local],node2) > theta
+ # # tmp_3 = euclidean_distance([X_local,Y_local],node3) > theta
+ # # tmp_4 = euclidean_distance([X_local,Y_local],node4) > theta
+ # # boolQuantity = np.logical_and(tmp_1, np.logical_and(tmp_2, np.logical_and(tmp_3,tmp_4)))
+ # # boolQuantity = np.logical_and(tmp_1, tmp_2)
+ # boolQuantity = tmp_1
+ # indicator[in_grain] = np.where(boolQuantity==True, 1, 0)
+
+ """
+ indicator function for Moon
+ """
+ # # midpoint = node1 + t[i] * (np.array(node4)-np.array(node1))
+ # midpoint = [-0.5,0] + t[i] * (np.array([0.5,0])-np.array([-0.5,0]))
+ # outerDiam = 0.3
+
+ # tmp_1 = euclidean_distance([X_local,Y_local],midpoint) > theta
+ # tmp_2 = euclidean_distance([X_local,Y_local],center) < outerDiam
+ # # tmp_2 = euclidean_distance([X_local,Y_local],center) > theta
+ # # tmp_1 = euclidean_distance([X_local,Y_local],node1) > theta
+ # # tmp_2 = euclidean_distance([X_local,Y_local],node2) > theta
+ # # tmp_3 = euclidean_distance([X_local,Y_local],node3) > theta
+ # # tmp_4 = euclidean_distance([X_local,Y_local],node4) > theta
+ # # boolQuantity = np.logical_and(tmp_1, np.logical_and(tmp_2, np.logical_and(tmp_3,tmp_4)))
+ # boolQuantity = np.logical_and(tmp_1, tmp_2)
+ # # boolQuantity = tmp_1
+ # indicator[in_grain] = np.where(boolQuantity==True, 1, 0)
+
+
+ """
+ indicator function for Cross
+ """
+ # #cross
+ # tmp_1 = np.abs(Y_local) < theta
+ # tmp_2= np.abs(X_local) < theta
+
+ # #center block
+ # center_theta = 0.3
+ # tmp_3 = infinity_norm_distance([X_local,Y_local],center) < center_theta
+
+ # boolQuantity = np.logical_or(tmp_1, np.logical_or(tmp_2,tmp_3))
+ # # boolQuantity = tmp_3
+ # indicator[in_grain] = np.where(boolQuantity==True, 1, 0)
+
+
+ """
+ indicator function for Cross
+ """
+ #cross
+ tmp_1 = np.abs(Y_local) < 0.05
+ tmp_2= np.abs(X_local) < 0.05
+
+ tmp_3 = infinity_norm_distance([X_local,Y_local],center) > cdistance[i]
+ tmp_4 = infinity_norm_distance([X_local,Y_local],center) < cdistance[i] + theta
+
+
+
+ # boolQuantity = np.logical_and(tmp_1, tmp_2)
+ boolQuantity = np.logical_or(tmp_1, np.logical_or(tmp_2, np.logical_and(tmp_3,tmp_4)))
+
+ # #center block
+ # center_theta = 0.3
+ # tmp_3 = infinity_norm_distance([X_local,Y_local],center) < center_theta
+
+ # boolQuantity = np.logical_or(tmp_1, np.logical_or(tmp_2,tmp_3))
+ # boolQuantity = tmp_3
+ indicator[in_grain] = np.where(boolQuantity==True, 1, 0)
+
+# Visualization
+# plt.figure(figsize=(12, 3))
+# ax = plt.gca()
+# plt.pcolormesh(X, Y, indicator, cmap='Paired', shading='auto')
+
+# Plot main visualization
+"""
+ Create plot with 'pcolormesh'
+ * Reducing the image-quality/file-size by using rasterized option:
+ * Looks much smoother without 'rasterize' option however file-size gets out of hand..:
+ * Together with the 'dpi=..' option of figsave we can control the file-size
+ * Advantage: Text etc. is still vectorized without having too large files.
+"""
+mesh = ax.pcolormesh(X, Y, indicator, cmap='Paired', shading='auto')
+# mesh = ax.pcolormesh(X, Y, indicator, cmap='Paired', rasterized=True)
+# plt.title(f'Offset Stripes: θ = {alpha_degrees}°, offset = {offset}', pad=15)
+
+# Add grain boundaries
+for i in range(num_grains_x):
+ for j in range(num_grains_y):
+ rect = Rectangle((i*grain_size_x, j*grain_size_y),
+ grain_size_x, grain_size_y,
+ linewidth=1.0,
+ edgecolor='lightgray',
+ facecolor='none')
+ ax.add_patch(rect)
+
+# Clean axis
+# ax.set_aspect(1/2)
+ax.set_aspect(1)
+ax.set_xticks([])
+ax.set_yticks([])
+# plt.box(False)
+# plt.tight_layout()
+# plt.show()
+# Save Figure as pdf.
+fig.set_size_inches(width, height)
+fig.savefig(resultPath + '/MacroMicrostructurePlot'+'.png', dpi=800) #dpi on
+# fig.savefig(resultPath + '/MacroMicrostructurePlot'+'.pdf',format='pdf', dpi=1500) #dpi on
+print('Saved MacroMicrostructure-plot as figure.')
+
+#################################################
+
+
+# import numpy as np
+# import matplotlib.pyplot as plt
+# from matplotlib.patches import Rectangle
+
+# # Domain parameters
+# x_length = 4
+# y_length = 1
+# aspect_ratio = x_length/y_length
+# n = 1000
+# num_grains_x = 8
+# num_grains_y = 2
+# grain_size_x = x_length/num_grains_x
+# grain_size_y = y_length/num_grains_y
+# base_epsilon = 0.08 # Visual width
+# offset = 0.15 # Offset parameter
+# initial_angle = 0 # Starting angle (degrees)
+# angle_range = 180 # Total angular variation (degrees)
+
+# def distance_to_line(x, y, theta, offset=0, ar=aspect_ratio):
+# """Distance calculation with aspect ratio and offset compensation"""
+# x_scaled = x/ar
+# return np.abs(-np.sin(theta)*x_scaled + np.cos(theta)*y - offset)
+
+# # Create figure and axes explicitly
+# fig, ax = plt.subplots(figsize=(12, 3))
+
+# # Create grid and initialize indicator
+# x = np.linspace(0, x_length, n)
+# y = np.linspace(0, y_length, n)
+# X, Y = np.meshgrid(x, y)
+# indicator = np.zeros_like(X)
+
+# for i in range(num_grains_x):
+# for j in range(num_grains_y):
+# x_center = (i + 0.5) * grain_size_x
+# theta_deg = initial_angle + (x_center/x_length) * angle_range
+# theta = np.deg2rad(theta_deg)
+
+# x_min, x_max = i*grain_size_x, (i+1)*grain_size_x
+# y_min, y_max = j*grain_size_y, (j+1)*grain_size_y
+
+# in_grain = (X >= x_min) & (X < x_max) & (Y >= y_min) & (Y < y_max)
+
+# X_local = ((X[in_grain] - x_min)/grain_size_x) - 0.5
+# Y_local = ((Y[in_grain] - y_min)/grain_size_y) - 0.5
+
+# distances = distance_to_line(X_local, Y_local, theta, offset)
+# indicator[in_grain] = np.where(distances < base_epsilon, 1, 0)
+
+# # Plot main visualization
+# mesh = ax.pcolormesh(X, Y, indicator, cmap='binary', shading='auto')
+
+# # Add grain boundaries
+# for i in range(num_grains_x):
+# for j in range(num_grains_y):
+# rect = Rectangle((i*grain_size_x, j*grain_size_y),
+# grain_size_x, grain_size_y,
+# linewidth=1.2,
+# edgecolor='lightgray',
+# facecolor='none')
+# ax.add_patch(rect)
+
+# # Configure axes
+# ax.set_aspect(1/4)
+# ax.set_title(f'Stripe Pattern: θ={initial_angle}-{initial_angle+angle_range}°, offset={offset}',
+# pad=15, fontsize=14)
+# ax.set_xticks([])
+# ax.set_yticks([])
+# ax.spines['top'].set_visible(False)
+# ax.spines['right'].set_visible(False)
+# ax.spines['bottom'].set_visible(False)
+# ax.spines['left'].set_visible(False)
+
+# # Adjust layout and save
+# plt.tight_layout()
+# fig.savefig('grain_stripes.pdf', format='pdf', bbox_inches='tight', dpi=300)
+
+# # Optional: Close the figure to free memory
+# plt.close(fig)
+
+
+# ##################
+# import numpy as np
+# import matplotlib.pyplot as plt
+# from matplotlib.patches import Rectangle
+
+# # Domain parameters
+# x_length = 2
+# y_length = 1
+# aspect_ratio = x_length/y_length
+# n = 800
+# num_grains_x = 8
+# num_grains_y = 4
+# grain_size_x = x_length/num_grains_x
+# grain_size_y = y_length/num_grains_y
+# base_epsilon = 0.08
+# offset = 0.15
+# initial_angle = 0
+# angle_range = 180
+
+
+# resultPath = '/home/klaus/Desktop/MacroMicroStructurePlot'
+# textwidth = 6.26894 # textwidth in inch
+# width = textwidth * 0.5
+# # width = textwidth * 0.33
+# height = textwidth/1.618 # The golden ratio.
+
+# def distance_to_line(x, y, theta, offset=0, ar=aspect_ratio):
+# """Distance calculation with aspect ratio and offset compensation"""
+# x_scaled = x/ar
+# return np.abs(-np.sin(theta)*x_scaled + np.cos(theta)*y - offset)
+
+# # Create figure and axes explicitly
+# # fig, ax = plt.subplots(figsize=(12, 3))
+# fig, ax = plt.subplots(figsize=(width, height))
+
+# # Create grid and initialize indicator
+# x = np.linspace(0, x_length, n)
+# y = np.linspace(0, y_length, n)
+# X, Y = np.meshgrid(x, y)
+# indicator = np.zeros_like(X)
+
+# for i in range(num_grains_x):
+# for j in range(num_grains_y):
+# x_center = (i + 0.5) * grain_size_x
+# theta_deg = initial_angle + (x_center/x_length) * angle_range
+# theta = np.deg2rad(theta_deg)
+
+# x_min, x_max = i*grain_size_x, (i+1)*grain_size_x
+# y_min, y_max = j*grain_size_y, (j+1)*grain_size_y
+
+# in_grain = (X >= x_min) & (X < x_max) & (Y >= y_min) & (Y < y_max)
+
+# # Fixed parentheses syntax
+# X_local = ((X[in_grain] - x_min)/grain_size_x) - 0.5 # Corrected
+# Y_local = ((Y[in_grain] - y_min)/grain_size_y) - 0.5 # Corrected
+
+# distances = distance_to_line(X_local, Y_local, theta, offset)
+# indicator[in_grain] = np.where(distances < base_epsilon, 1, 0)
+
+# # Plot main visualization
+# ax.pcolormesh(X, Y, indicator, cmap='binary', shading='auto')
+
+# # Add grain boundaries
+# for i in range(num_grains_x):
+# for j in range(num_grains_y):
+# rect = Rectangle((i*grain_size_x, j*grain_size_y),
+# grain_size_x, grain_size_y,
+# linewidth=1.2,
+# edgecolor='lightgray',
+# facecolor='none')
+# ax.add_patch(rect)
+
+# # Configure axes
+# ax.set_aspect(1)
+# ax.set_title(f'Stripe Pattern: θ={initial_angle}-{initial_angle+angle_range}°, offset={offset}',
+# pad=15, fontsize=14)
+# ax.set_axis_off() # Cleaner than individual spine/ticks removal
+
+# plt.show()
+
+# # Save and close
+# plt.tight_layout()
+# # fig.savefig('grain_stripes.pdf', format='pdf', bbox_inches='tight', dpi=300)
+# fig.savefig('grain_stripes.png', bbox_inches='tight', dpi=500)
+# plt.close(fig)
+# print("PDF successfully generated at: grain_stripes.pdf")
+
+
+
+
+# ################
+# import numpy as np
+# import matplotlib.pyplot as plt
+# from matplotlib.patches import Rectangle
+
+# # Optimized parameters
+# x_length = 4
+# y_length = 1
+# n = 200 # Reduced resolution (was 1000)
+# num_grains_x = 8
+# num_grains_y = 2
+# grain_size_x = x_length/num_grains_x
+# grain_size_y = y_length/num_grains_y
+# base_epsilon = 0.08
+# offset = 0.15
+# initial_angle = 0
+# angle_range = 180
+
+# def distance_to_line(x, y, theta, offset=0, ar=x_length/y_length):
+# x_scaled = x/ar
+# return np.abs(-np.sin(theta)*x_scaled + np.cos(theta)*y - offset)
+
+# # Create figure
+# fig, ax = plt.subplots(figsize=(12, 3))
+
+# # Create optimized grid
+# x = np.linspace(0, x_length, n)
+# y = np.linspace(0, y_length, n)
+# X, Y = np.meshgrid(x, y)
+# indicator = np.zeros_like(X)
+
+# for i in range(num_grains_x):
+# for j in range(num_grains_y):
+# # ... [same grain processing as before] ...
+
+# # Rasterize the heatmap while keeping vectors for boundaries/text
+# heatmap = ax.pcolormesh(X, Y, indicator, cmap='binary', shading='auto',
+# rasterized=True) # Critical optimization
+
+# # Add grain boundaries (vector elements)
+# for i in range(num_grains_x):
+# for j in range(num_grains_y):
+# rect = Rectangle((i*grain_size_x, j*grain_size_y),
+# grain_size_x, grain_size_y,
+# linewidth=1.2,
+# edgecolor='lightgray',
+# facecolor='none')
+# ax.add_patch(rect)
+
+# # Final formatting
+# ax.set_aspect(1/4)
+# ax.set_title(f'Optimized Pattern: θ={initial_angle}-{initial_angle+angle_range}°',
+# pad=15, fontsize=14)
+# ax.set_axis_off()
+
+# # Save with optimized PDF settings
+# plt.tight_layout()
+# fig.savefig('optimized_grain_stripes.pdf', format='pdf',
+# bbox_inches='tight',
+# dpi=150, # Reduced from 300
+# metadata={'Creator': '', 'Producer': ''}, # Remove bloat
+# )
+# plt.close(fig)
+# print("Optimized PDF generated successfully")
\ No newline at end of file
diff --git a/dune-uncrustify.cfg b/dune-uncrustify.cfg
new file mode 100644
index 0000000000000000000000000000000000000000..57275b1441a403e02e882e7c121331816ed86344
--- /dev/null
+++ b/dune-uncrustify.cfg
@@ -0,0 +1,125 @@
+tok_split_gte=false
+utf8_byte=false
+utf8_force=false
+indent_cmt_with_tabs=false
+indent_align_string=false
+indent_braces=false
+indent_braces_no_func=false
+indent_braces_no_class=false
+indent_braces_no_struct=false
+indent_brace_parent=false
+indent_namespace=true
+indent_extern=true
+indent_class=true
+indent_class_colon=true
+indent_else_if=false
+indent_var_def_cont=false
+indent_func_call_param=false
+indent_func_def_param=false
+indent_func_proto_param=false
+indent_func_class_param=false
+indent_func_ctor_var_param=false
+indent_template_param=true
+indent_func_param_double=true
+indent_relative_single_line_comments=false
+indent_col1_comment=true
+indent_access_spec_body=false
+indent_paren_nl=false
+indent_comma_paren=false
+indent_bool_paren=false
+indent_first_bool_expr=false
+indent_square_nl=false
+indent_preserve_sql=false
+indent_align_assign=true
+sp_balance_nested_parens=false
+align_keep_tabs=false
+align_with_tabs=false
+align_on_tabstop=false
+align_number_left=false
+align_func_params=false
+align_same_func_call_params=false
+align_var_def_colon=false
+align_var_def_attribute=false
+align_var_def_inline=false
+align_right_cmt_mix=false
+align_on_operator=false
+align_mix_var_proto=false
+align_single_line_func=false
+align_single_line_brace=false
+align_nl_cont=false
+align_left_shift=true
+align_oc_decl_colon=false
+nl_collapse_empty_body=true
+nl_assign_leave_one_liners=true
+nl_class_leave_one_liners=true
+nl_enum_leave_one_liners=true
+nl_getset_leave_one_liners=false
+nl_func_leave_one_liners=false
+nl_if_leave_one_liners=false
+nl_multi_line_cond=false
+nl_multi_line_define=false
+nl_before_case=false
+nl_after_case=false
+nl_after_return=false
+nl_after_semicolon=false
+nl_after_brace_open=false
+nl_after_brace_open_cmt=false
+nl_after_vbrace_open=false
+nl_after_vbrace_open_empty=false
+nl_after_brace_close=false
+nl_after_vbrace_close=false
+nl_define_macro=false
+nl_squeeze_ifdef=false
+nl_ds_struct_enum_cmt=false
+nl_ds_struct_enum_close_brace=false
+nl_create_if_one_liner=false
+nl_create_for_one_liner=false
+nl_create_while_one_liner=false
+ls_for_split_full=false
+ls_func_split_full=false
+nl_after_multiline_comment=false
+eat_blanks_after_open_brace=false
+eat_blanks_before_close_brace=false
+mod_full_brace_if_chain=false
+mod_pawn_semicolon=false
+mod_full_paren_if_bool=false
+mod_remove_extra_semicolon=false
+mod_sort_import=false
+mod_sort_using=false
+mod_sort_include=false
+mod_move_case_break=false
+mod_remove_empty_return=false
+cmt_indent_multi=true
+cmt_c_group=false
+cmt_c_nl_start=false
+cmt_c_nl_end=false
+cmt_cpp_group=false
+cmt_cpp_nl_start=false
+cmt_cpp_nl_end=false
+cmt_cpp_to_c=false
+cmt_star_cont=false
+cmt_multi_check_last=true
+cmt_insert_before_preproc=false
+pp_indent_at_level=false
+pp_region_indent_code=false
+pp_if_indent_code=false
+pp_define_at_level=false
+indent_columns=2
+indent_access_spec=-2
+nl_end_of_file_min=1
+indent_with_tabs=0
+sp_before_semi=ignore
+sp_after_semi=ignore
+sp_after_semi_for=ignore
+sp_before_comma=ignore
+sp_before_case_colon=ignore
+sp_not=ignore
+sp_inv=ignore
+sp_addr=ignore
+sp_member=ignore
+sp_deref=ignore
+sp_sign=ignore
+sp_incdec=ignore
+sp_before_nl_cont=ignore
+nl_end_of_file=force
+nl_before_if=ignore
diff --git a/dune/microstructure/CorrectorComputer.hh b/dune/microstructure/CorrectorComputer.hh
index 34917870853d2540a9221770afee63927feb3a21..91c2bf158c738f231214363d45b976c57cd81711 100644
--- a/dune/microstructure/CorrectorComputer.hh
+++ b/dune/microstructure/CorrectorComputer.hh
@@ -5,19 +5,19 @@
#include <dune/common/parametertree.hh>
#include <dune/functions/functionspacebases/interpolate.hh>
-#include <dune/functions/gridfunctions/gridviewfunction.hh>
-#include <dune/functions/gridfunctions/discreteglobalbasisfunction.hh>
+#include <dune/functions/gridfunctions/gridviewfunction.hh>
+#include <dune/functions/gridfunctions/discreteglobalbasisfunction.hh>
#include <dune/grid/io/file/vtk/subsamplingvtkwriter.hh>
#include <dune/istl/matrixindexset.hh>
-#include <dune/istl/eigenvalue/test/matrixinfo.hh> // TEST: compute condition Number
+#include <dune/istl/eigenvalue/test/matrixinfo.hh>
#include <dune/microstructure/matrix_operations.hh>
#include <dune/microstructure/voigthelper.hh>
-#include <dune/solvers/solvers/umfpacksolver.hh>
-#include <dune/solvers/solvers/cholmodsolver.hh>
+#include <dune/solvers/solvers/umfpacksolver.hh>
+#include <dune/solvers/solvers/cholmodsolver.hh>
using namespace MatrixOperations;
using std::shared_ptr;
@@ -28,20 +28,20 @@ template <class Basis, class Material> //, class LocalScalar, class Local2Tensor
class CorrectorComputer {
public:
- static const int dimworld = 3; //GridView::dimensionworld;
- static const int dim = Basis::GridView::dimension; //const int dim = Domain::dimension;
-
- using GridView = typename Basis::GridView;
- using Domain = typename GridView::template Codim<0>::Geometry::GlobalCoordinate;
- using VectorRT = Dune::FieldVector< double, dimworld>;
- using MatrixRT = Dune::FieldMatrix< double, dimworld, dimworld>;
- using FuncScalar = std::function< double(const Domain&) >;
- using FuncVector = std::function< VectorRT(const Domain&) >;
- using Func2Tensor = std::function< MatrixRT(const Domain&) >;
- using Func2int = std::function< int(const Domain&) >;
- using VectorCT = Dune::BlockVector<Dune::FieldVector<double,1> >;
- using MatrixCT = Dune::BCRSMatrix<Dune::FieldMatrix<double,1,1> >;
- using ElementMatrixCT = Dune::Matrix<double>;
+ static const int dimworld = 3; //GridView::dimensionworld;
+ static const int dim = Basis::GridView::dimension; //const int dim = Domain::dimension;
+
+ using GridView = typename Basis::GridView;
+ using Domain = typename GridView::template Codim<0>::Geometry::GlobalCoordinate;
+ using VectorRT = Dune::FieldVector< double, dimworld>;
+ using MatrixRT = Dune::FieldMatrix< double, dimworld, dimworld>;
+ using FuncScalar = std::function< double (const Domain&) >;
+ using FuncVector = std::function< VectorRT (const Domain&) >;
+ using Func2Tensor = std::function< MatrixRT (const Domain&) >;
+ using Func2int = std::function< int (const Domain&) >;
+ using VectorCT = Dune::BlockVector<Dune::FieldVector<double,1> >;
+ using MatrixCT = Dune::BCRSMatrix<Dune::FieldMatrix<double,1,1> >;
+ using ElementMatrixCT = Dune::Matrix<double>;
@@ -51,20 +51,20 @@ public:
protected:
- const Basis& basis_;
+ const Basis& basis_;
// const Material& material_;
// Material& material_;
// Material material_;
- // fstream& log_; // Output-log
- const Dune::ParameterTree& parameterSet_;
+ // fstream& log_; // Output-log
+ const Dune::ParameterTree& parameterSet_;
- MatrixCT stiffnessMatrix_;
- VectorCT load_alpha1_,load_alpha2_,load_alpha3_; //right-hand side(load) vectors
+ MatrixCT stiffnessMatrix_;
+ VectorCT load_alpha1_,load_alpha2_,load_alpha3_; //right-hand side(load) vectors
- VectorCT x_1_, x_2_, x_3_; // (all) Corrector coefficient vectors
- VectorCT phi_1_, phi_2_, phi_3_; // Corrector phi_i coefficient vectors
+ VectorCT x_1_, x_2_, x_3_; // (all) Corrector coefficient vectors
+ VectorCT phi_1_, phi_2_, phi_3_; // Corrector phi_i coefficient vectors
Dune::FieldVector<double,3> m_1_, m_2_, m_3_; // Corrector m_i coefficient vectors
// (assembled) corrector matrices M_i
@@ -77,119 +77,119 @@ protected:
const std::array<VoigtVector<double,3>,3 > matrixBasis_;
Func2Tensor x3G_1_ = [] (const Domain& x) {
- return MatrixRT{{1.0*x[2], 0.0, 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- };
+ return MatrixRT{{1.0*x[2], 0.0, 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ };
Func2Tensor x3G_2_ = [] (const Domain& x) {
- return MatrixRT{{0.0, 0.0, 0.0}, {0.0, 1.0*x[2], 0.0}, {0.0, 0.0, 0.0}};
- };
+ return MatrixRT{{0.0, 0.0, 0.0}, {0.0, 1.0*x[2], 0.0}, {0.0, 0.0, 0.0}};
+ };
- Func2Tensor x3G_3_ = [] (const Domain& x) {
- return MatrixRT{{0.0, (1.0/sqrt(2.0))*x[2], 0.0}, {(1.0/sqrt(2.0))*x[2], 0.0, 0.0}, {0.0, 0.0, 0.0}};
- };
+ Func2Tensor x3G_3_ = [] (const Domain& x) {
+ return MatrixRT{{0.0, (1.0/sqrt(2.0))*x[2], 0.0}, {(1.0/sqrt(2.0))*x[2], 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ };
const std::array<Func2Tensor, 3> x3MatrixBasisContainer_ = {x3G_1_, x3G_2_, x3G_3_};
- // --- Offset between basis indices
+ // --- Offset between basis indices
const int phiOffset_;
-public:
- ///////////////////////////////
- // constructor
- ///////////////////////////////
- // CorrectorComputer(const Basis& basis,
- // Material& material,
- // std::fstream& log,
- // const Dune::ParameterTree& parameterSet)
- // : basis_(basis),
- // material_(material),
- // gamma_(material_.getGamma()),
- // log_(log),
- // parameterSet_(parameterSet),
- // matrixBasis_(std::array<VoigtVector<double,3>,3>{matrixToVoigt(Dune::FieldMatrix<double,3,3>({{1, 0, 0}, {0, 0, 0}, {0, 0, 0}})),
- // matrixToVoigt(Dune::FieldMatrix<double,3,3>({{0, 0, 0}, {0, 1, 0}, {0, 0, 0}})),
- // matrixToVoigt(Dune::FieldMatrix<double,3,3>({{0, 1/std::sqrt(2.0), 0}, {1/std::sqrt(2.0), 0, 0}, {0, 0, 0}}))}),
- // phiOffset_(basis.size())
- // {}
-
- CorrectorComputer(const Basis& basis,
- std::shared_ptr<Material> material,
- // std::fstream& log,
- const Dune::ParameterTree& parameterSet)
- : basis_(basis),
- material_(material),
- // gamma_(material_->getGamma()),
- // log_(log),
- parameterSet_(parameterSet),
- matrixBasis_(std::array<VoigtVector<double,3>,3>{matrixToVoigt(Dune::FieldMatrix<double,3,3>({{1, 0, 0}, {0, 0, 0}, {0, 0, 0}})),
- matrixToVoigt(Dune::FieldMatrix<double,3,3>({{0, 0, 0}, {0, 1, 0}, {0, 0, 0}})),
- matrixToVoigt(Dune::FieldMatrix<double,3,3>({{0, 1/std::sqrt(2.0), 0}, {1/std::sqrt(2.0), 0, 0}, {0, 0, 0}}))}),
- phiOffset_(basis.size())
- {}
+public:
+ ///////////////////////////////
+ // constructor
+ ///////////////////////////////
+ // CorrectorComputer(const Basis& basis,
+ // Material& material,
+ // std::fstream& log,
+ // const Dune::ParameterTree& parameterSet)
+ // : basis_(basis),
+ // material_(material),
+ // gamma_(material_.getGamma()),
+ // log_(log),
+ // parameterSet_(parameterSet),
+ // matrixBasis_(std::array<VoigtVector<double,3>,3>{matrixToVoigt(Dune::FieldMatrix<double,3,3>({{1, 0, 0}, {0, 0, 0}, {0, 0, 0}})),
+ // matrixToVoigt(Dune::FieldMatrix<double,3,3>({{0, 0, 0}, {0, 1, 0}, {0, 0, 0}})),
+ // matrixToVoigt(Dune::FieldMatrix<double,3,3>({{0, 1/std::sqrt(2.0), 0}, {1/std::sqrt(2.0), 0, 0}, {0, 0, 0}}))}),
+ // phiOffset_(basis.size())
+ // {}
+
+ CorrectorComputer(const Basis& basis,
+ std::shared_ptr<Material> material,
+ // std::fstream& log,
+ const Dune::ParameterTree& parameterSet)
+ : basis_(basis),
+ material_(material),
+ // gamma_(material_->getGamma()),
+ // log_(log),
+ parameterSet_(parameterSet),
+ matrixBasis_(std::array<VoigtVector<double,3>,3>{matrixToVoigt(Dune::FieldMatrix<double,3,3>({{1, 0, 0}, {0, 0, 0}, {0, 0, 0}})),
+ matrixToVoigt(Dune::FieldMatrix<double,3,3>({{0, 0, 0}, {0, 1, 0}, {0, 0, 0}})),
+ matrixToVoigt(Dune::FieldMatrix<double,3,3>({{0, 1/std::sqrt(2.0), 0}, {1/std::sqrt(2.0), 0, 0}, {0, 0, 0}}))}),
+ phiOffset_(basis.size())
+ {}
// -----------------------------------------------------------------
// --- Assemble Corrector problems
void assemble()
{
- Dune::Timer StiffnessTimer;
- assembleCellStiffness(stiffnessMatrix_);
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "Stiffness assembly Timer: " << StiffnessTimer.elapsed() << std::endl;
-
+ Dune::Timer StiffnessTimer;
+ assembleCellStiffness(stiffnessMatrix_);
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "Stiffness assembly Timer: " << StiffnessTimer.elapsed() << std::endl;
+
- Dune::Timer LoadVectorTimer;
- assembleCellLoad(load_alpha1_ ,x3G_1_);
- assembleCellLoad(load_alpha2_ ,x3G_2_);
- assembleCellLoad(load_alpha3_ ,x3G_3_);
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "Load vector assembly Timer: " << LoadVectorTimer.elapsed() << std::endl;
+ Dune::Timer LoadVectorTimer;
+ assembleCellLoad(load_alpha1_ ,x3G_1_);
+ assembleCellLoad(load_alpha2_ ,x3G_2_);
+ assembleCellLoad(load_alpha3_ ,x3G_3_);
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "Load vector assembly Timer: " << LoadVectorTimer.elapsed() << std::endl;
};
- // void updateMaterial(Material mat)
- // {
- // this->material_ = mat;
- // }
+ // void updateMaterial(Material mat)
+ // {
+ // this->material_ = mat;
+ // }
- void updateMaterial(std::shared_ptr<Material> mat)
- {
- // std::cout << "updateMaterial of CorrectorComputer" << std::endl;
- material_ = mat;
- }
+ void updateMaterial(std::shared_ptr<Material> mat)
+ {
+ // std::cout << "updateMaterial of CorrectorComputer" << std::endl;
+ material_ = mat;
+ }
- ///////////////////////////////
- // Getter
- ///////////////////////////////
- const shared_ptr<Basis> getBasis() {return make_shared<Basis>(basis_);}
+ ///////////////////////////////
+ // Getter
+ ///////////////////////////////
+ const shared_ptr<Basis> getBasis() {return make_shared<Basis>(basis_);}
- Dune::ParameterTree getParameterSet() const {return parameterSet_;}
+ Dune::ParameterTree getParameterSet() const {return parameterSet_;}
- // fstream* getLog(){return &log_;}
+ // fstream* getLog(){return &log_;}
- // double getGamma(){return gamma_;}
- double getGamma(){return material_->gamma_;}
+ // double getGamma(){return gamma_;}
+ double getGamma(){return material_->gamma_;}
- shared_ptr<MatrixCT> getStiffnessMatrix(){return make_shared<MatrixCT>(stiffnessMatrix_);}
- shared_ptr<VectorCT> getLoad_alpha1(){return make_shared<VectorCT>(load_alpha1_);}
- shared_ptr<VectorCT> getLoad_alpha2(){return make_shared<VectorCT>(load_alpha2_);}
- shared_ptr<VectorCT> getLoad_alpha3(){return make_shared<VectorCT>(load_alpha3_);}
- // shared_ptr<Material> getMaterial(){return make_shared<Material>(material_);}
- shared_ptr<Material> getMaterial(){return material_;}
+ shared_ptr<MatrixCT> getStiffnessMatrix(){return make_shared<MatrixCT>(stiffnessMatrix_);}
+ shared_ptr<VectorCT> getLoad_alpha1(){return make_shared<VectorCT>(load_alpha1_);}
+ shared_ptr<VectorCT> getLoad_alpha2(){return make_shared<VectorCT>(load_alpha2_);}
+ shared_ptr<VectorCT> getLoad_alpha3(){return make_shared<VectorCT>(load_alpha3_);}
+ // shared_ptr<Material> getMaterial(){return make_shared<Material>(material_);}
+ shared_ptr<Material> getMaterial(){return material_;}
- // --- Get Correctors
- auto getMcontainer(){return mContainer;}
- shared_ptr<std::array<VectorCT, 3>> getPhicontainer(){return make_shared<std::array<VectorCT, 3>>(phiContainer);}
+ // --- Get Correctors
+ auto getMcontainer(){return mContainer;}
+ shared_ptr<std::array<VectorCT, 3> > getPhicontainer(){return make_shared<std::array<VectorCT, 3> >(phiContainer);}
- auto getMatrixBasiscontainer(){return make_shared<std::array<VoigtVector<double,3>,3 >>(matrixBasis_);}
- auto getx3MatrixBasiscontainer(){return x3MatrixBasisContainer_;}
+ auto getMatrixBasiscontainer(){return make_shared<std::array<VoigtVector<double,3>,3 > >(matrixBasis_);}
+ auto getx3MatrixBasiscontainer(){return x3MatrixBasisContainer_;}
- shared_ptr<VectorCT> getCorr_phi1(){return make_shared<VectorCT>(phi_1_);}
- shared_ptr<VectorCT> getCorr_phi2(){return make_shared<VectorCT>(phi_2_);}
- shared_ptr<VectorCT> getCorr_phi3(){return make_shared<VectorCT>(phi_3_);}
+ shared_ptr<VectorCT> getCorr_phi1(){return make_shared<VectorCT>(phi_1_);}
+ shared_ptr<VectorCT> getCorr_phi2(){return make_shared<VectorCT>(phi_2_);}
+ shared_ptr<VectorCT> getCorr_phi3(){return make_shared<VectorCT>(phi_3_);}
@@ -241,7 +241,7 @@ public:
//////////////////////////////////////////////////////////////////
// setOneBaseFunctionToZero
//////////////////////////////////////////////////////////////////
- if(parameterSet_.get<bool>("set_oneBasisFunction_Zero ", true)){
+ if(parameterSet_.get<bool>("set_oneBasisFunction_Zero ", true)) {
Dune::FieldVector<int,3> row;
unsigned int arbitraryLeafIndex = parameterSet_.get<unsigned int>("arbitraryLeafIndex", 0);
unsigned int arbitraryElementNumber = parameterSet_.get<unsigned int>("arbitraryElementNumber", 0);
@@ -272,8 +272,8 @@ public:
void computeElementStiffnessMatrix(const typename Basis::LocalView& localView,
const Dune::QuadratureRule<double,dim>& quadRule,
const std::vector<int>& phaseAtQuadPoint,
- ElementMatrixCT& elementMatrix
- )
+ ElementMatrixCT& elementMatrix
+ )
{
auto element = localView.element();
@@ -285,7 +285,7 @@ public:
// LocalBasis-Offset
const int localPhiOffset = localView.size();
- const auto& localFiniteElement = localView.tree().child(0).finiteElement();
+ const auto& localFiniteElement = localView.tree().child(0).finiteElement();
const auto nSf = localFiniteElement.localBasis().size();
int QPcounter= 0;
@@ -320,31 +320,31 @@ public:
const auto phase = phaseAtQuadPoint[QPcounter-1];
for (size_t l=0; l< dimworld; l++)
- for (size_t j=0; j < nSf; j++ )
- {
+ for (size_t j=0; j < nSf; j++ )
+ {
size_t row = localView.tree().child(l).localIndex(j);
-
+
// "phi*phi"-part
for (size_t k=0; k < dimworld; k++)
- for (size_t i=0; i < nSf; i++)
- {
+ for (size_t i=0; i < nSf; i++)
+ {
double energyDensity= voigtScalarProduct(material_->applyElasticityTensor(deformationGradient[i][k],phase),deformationGradient[j][l]);
- size_t col = localView.tree().child(k).localIndex(i);
-
+ size_t col = localView.tree().child(k).localIndex(i);
+
elementMatrix[row][col] += energyDensity * quadPoint.weight() * integrationElement;
- }
-
+ }
+
// "m*phi" & "phi*m" - part
for( size_t m=0; m<3; m++)
{
- double energyDensityGphi = voigtScalarProduct(material_->applyElasticityTensor(matrixBasis_[m],phase),deformationGradient[j][l]);
+ double energyDensityGphi = voigtScalarProduct(material_->applyElasticityTensor(matrixBasis_[m],phase),deformationGradient[j][l]);
- auto value = energyDensityGphi * quadPoint.weight() * integrationElement;
- elementMatrix[row][localPhiOffset+m] += value;
- elementMatrix[localPhiOffset+m][row] += value;
+ auto value = energyDensityGphi * quadPoint.weight() * integrationElement;
+ elementMatrix[row][localPhiOffset+m] += value;
+ elementMatrix[localPhiOffset+m][row] += value;
}
- }
+ }
// "m*m"-part
for(size_t m=0; m<3; m++) //TODO ist symmetric.. reicht die hälfte zu berechnen!!!
for(size_t n=0; n<3; n++)
@@ -352,11 +352,11 @@ public:
double energyDensityGG = voigtScalarProduct(material_->applyElasticityTensor(matrixBasis_[m],phase),matrixBasis_[n]);
elementMatrix[localPhiOffset+m][localPhiOffset+n] += energyDensityGG * quadPoint.weight() * integrationElement; // += !!!!! (Fixed-Bug)
-
+
}
}
- // std::cout << "Number of QuadPoints:" << QPcounter << std::endl;
- // printmatrix(std::cout, elementMatrix, "elementMatrix", "--");
+ // std::cout << "Number of QuadPoints:" << QPcounter << std::endl;
+ // printmatrix(std::cout, elementMatrix, "elementMatrix", "--");
}
@@ -364,18 +364,18 @@ public:
* @brief Compute element load vector. Layout:
* | f*phi|
* | f*m |
- *
- * @tparam Vector
- * @tparam LocalForce
- * @param localView
- * @param elementRhs
- * @param forceTerm
+ *
+ * @tparam Vector
+ * @tparam LocalForce
+ * @param localView
+ * @param elementRhs
+ * @param forceTerm
*/
template<class Vector, class LocalForce>
void computeElementLoadVector( const typename Basis::LocalView& localView,
- Vector& elementRhs,
- const LocalForce& forceTerm
- )
+ Vector& elementRhs,
+ const LocalForce& forceTerm
+ )
{
const auto element = localView.element();
const auto geometry = element.geometry();
@@ -393,7 +393,7 @@ public:
// LocalBasis-Offset
const int localPhiOffset = localView.size();
- int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1);
+ int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1);
const auto& quad = Dune::QuadratureRules<double,dim>::rule(element.type(), orderQR);
for (const auto& quadPoint : quad)
@@ -407,7 +407,7 @@ public:
for (size_t i=0; i< jacobians.size(); i++)
jacobians[i] = jacobians[i] * geometryJacobianInverse;
-
+
// "f*phi"-part
for (size_t i=0; i < nSf; i++)
@@ -418,7 +418,7 @@ public:
tmpDefGradientV[k][0] = jacobians[i][0][0]; // Y
tmpDefGradientV[k][1] = jacobians[i][0][1]; // X2
tmpDefGradientV[k][2] = jacobians[i][0][2]; // X3
-
+
VoigtVector<double,3> defGradientV = symVoigt(crossSectionDirectionScaling((1.0/(material_->gamma_)),tmpDefGradientV));
double energyDensity= voigtScalarProduct(material_->applyElasticityTensor((-1.0)*matrixToVoigt(forceTerm(quadPos)),localIndicatorFunction(quadPos)),defGradientV);
@@ -454,7 +454,7 @@ public:
bool cacheElementMatrices = parameterSet_.get<bool>("cacheElementMatrices", true);
// bool cacheElementMatrices = false;
// if(parameterSet_.get<bool>("cacheElementMatrices", true))
- if (parameterSet_.get<bool>("printMicroOutput ", false))
+ if (parameterSet_.get<bool>("printMicroOutput", false))
{
if (cacheElementMatrices)
{
@@ -513,37 +513,37 @@ public:
{
computeElementStiffnessMatrix(localView, quadRule, phaseAtQuadPoint, elementMatrix);
}
-
-
+
+
// TEST: Check Element-Stiffness-Symmetry:
if(parameterSet_.get<bool>("print_debug", false))
{
- for (size_t i=0; i<localPhiOffset; i++)
+ for (size_t i=0; i<localPhiOffset; i++)
for (size_t j=0; j<localPhiOffset; j++ )
{
- if(abs(elementMatrix[i][j] - elementMatrix[j][i]) > 1e-12 )
- std::cout << "ELEMENT-STIFFNESS MATRIX NOT SYMMETRIC!!!" << std::endl;
+ if(abs(elementMatrix[i][j] - elementMatrix[j][i]) > 1e-12 )
+ std::cout << "ELEMENT-STIFFNESS MATRIX NOT SYMMETRIC!!!" << std::endl;
}
}
//////////////////////////////////////////////////////////////////////////////
// GLOBAL STIFFNES ASSEMBLY
//////////////////////////////////////////////////////////////////////////////
for (size_t i=0; i<localPhiOffset; i++)
- for (size_t j=0; j<localPhiOffset; j++ )
- {
+ for (size_t j=0; j<localPhiOffset; j++ )
+ {
auto row = localView.index(i);
auto col = localView.index(j);
matrix[row][col] += elementMatrix[i][j];
- }
+ }
for (size_t i=0; i<localPhiOffset; i++)
- for(size_t m=0; m<3; m++)
- {
+ for(size_t m=0; m<3; m++)
+ {
auto row = localView.index(i);
matrix[row][phiOffset+m] += elementMatrix[i][localPhiOffset+m];
matrix[phiOffset+m][row] += elementMatrix[localPhiOffset+m][i];
- }
+ }
for (size_t m=0; m<3; m++ )
- for (size_t n=0; n<3; n++ )
+ for (size_t n=0; n<3; n++ )
matrix[phiOffset+m][phiOffset+n] += elementMatrix[localPhiOffset+m][localPhiOffset+n];
// printmatrix(std::cout, matrix, "StiffnessMatrix", "--");
@@ -562,9 +562,9 @@ public:
auto localView = basis_.localView();
const int phiOffset = basis_.dimension();
- // Transform G_alpha's to GridViewFunctions/LocalFunctions
+ // Transform G_alpha's to GridViewFunctions/LocalFunctions
auto loadGVF = Dune::Functions::makeGridViewFunction(forceTerm, basis_.gridView());
- auto loadFunctional = localFunction(loadGVF);
+ auto loadFunctional = localFunction(loadGVF);
for (const auto& element : elements(basis_.gridView()))
{
@@ -591,11 +591,14 @@ public:
}
}
- // -----------------------------------------------------------------
- // --- Functions for global integral mean equals zero constraint
+
+ /**
+ @brief This method is used to select 3 global indices that correspond to the 3 components of a given (by leadIdx)
+ local basis function.
+ */
auto arbitraryComponentwiseIndices(const int elementNumber,
- const int leafIdx
- )
+ const int leafIdx
+ )
{
// (Local Approach -- works for non Lagrangian-Basis too)
// Input : elementNumber & localIdx
@@ -622,48 +625,85 @@ public:
return row;
}
+
+ /**
+ @brief Method that fixes 3 (one for each component of a basis function) degrees of freedom
+ to factor out the constant nullspace of the system.
+ */
void setOneBaseFunctionToZero()
{
- if (parameterSet_.get<bool>("printMicroOutput ", false))
+ if (parameterSet_.get<bool>("printMicroOutput", false))
std::cout << "Setting one Basis-function to zero" << std::endl;
- // constexpr int dim = Basis::LocalView::Element::dimension;
-
unsigned int arbitraryLeafIndex = parameterSet_.template get<unsigned int>("arbitraryLeafIndex", 0);
unsigned int arbitraryElementNumber = parameterSet_.template get<unsigned int>("arbitraryElementNumber", 0);
//Determine 3 global indices (one for each component of an arbitrary local FE-function)
- Dune::FieldVector<std::size_t,3> row = arbitraryComponentwiseIndices(arbitraryElementNumber,arbitraryLeafIndex);
+ Dune::FieldVector<int,3> selectedIndices = arbitraryComponentwiseIndices(arbitraryElementNumber,arbitraryLeafIndex);
+ // printvector(std::cout, selectedIndices, "selectedIndices:", "--");
+ // Replace the corresponding rows in the stiffness matrix with entries of the identity matrix.
+ // for (int k = 0; k<dim; k++)
+ // {
+ // load_alpha1_[selectedIndices[k]] = 0.0;
+ // load_alpha2_[selectedIndices[k]] = 0.0;
+ // load_alpha3_[selectedIndices[k]] = 0.0;
+ // auto cIt = stiffnessMatrix_[selectedIndices[k]].begin();
+ // auto cEndIt = stiffnessMatrix_[selectedIndices[k]].end();
+ // for (; cIt!=cEndIt; ++cIt) //iterate over row
+ // *cIt = (cIt.index()==selectedIndices[k]) ? 1.0 : 0.0;
+ // }
+
+ // Replace the corresponding rows and columns in the stiffness matrix with entries of the identity matrix.
for (int k = 0; k<dim; k++)
{
- load_alpha1_[row[k]] = 0.0;
- load_alpha2_[row[k]] = 0.0;
- load_alpha3_[row[k]] = 0.0;
- auto cIt = stiffnessMatrix_[row[k]].begin();
- auto cEndIt = stiffnessMatrix_[row[k]].end();
- for (; cIt!=cEndIt; ++cIt)
- *cIt = (cIt.index()==row[k]) ? 1.0 : 0.0;
+ load_alpha1_[selectedIndices[k]] = 0.0;
+ load_alpha2_[selectedIndices[k]] = 0.0;
+ load_alpha3_[selectedIndices[k]] = 0.0;
+
+ //loop over all nonempty rows
+ for (auto row = stiffnessMatrix_.begin(); row != stiffnessMatrix_.end(); ++row)
+ {
+ // adjust column with index selectedIndices[k]
+ if(stiffnessMatrix_.exists(row.index(),selectedIndices[k]))
+ {
+ stiffnessMatrix_[row.index()][selectedIndices[k]] = (row.index()==selectedIndices[k]) ? 1.0 : 0.0;
+ }
+ // iterate over whole row of the selectedIndices[k]:
+ if(row.index() == selectedIndices[k])
+ {
+ auto cIt = stiffnessMatrix_[selectedIndices[k]].begin();
+ auto cEndIt = stiffnessMatrix_[selectedIndices[k]].end();
+ for (; cIt!=cEndIt; ++cIt)
+ {
+ *cIt = (cIt.index()==selectedIndices[k]) ? 1.0 : 0.0;
+ }
+ }
+ }
}
+
}
+ /**
+ @brief Method that determines global indices corresponding to the components k = 1,2,3 of the global basis functions
+ in order to subtract correct (component of) integral mean
+
+ In : child/component integer
+ Out : all global basis indices that belong to that component
+ */
auto childToIndexMap(const int k)
{
- // Input : child/component
- // Output : determine all Indices that belong to that component
+
auto localView = basis_.localView();
std::vector<int> r = { };
- // for (int n: r)
- // std::cout << n << ","<< std::endl;
- // Determine global indizes for each component k = 1,2,3.. in order to subtract correct (component of) integral Mean
- // (global) Indices that correspond to component k = 1,2,3
+ // Determine
for(const auto& element : elements(basis_.gridView()))
{
localView.bind(element);
- const auto& localFiniteElement = localView.tree().child(k).finiteElement();
- const auto nSf = localFiniteElement.localBasis().size();
+ const auto& localFiniteElement = localView.tree().child(k).finiteElement();
+ const auto nSf = localFiniteElement.localBasis().size();
for(size_t j=0; j<nSf; j++)
{
@@ -671,7 +711,7 @@ public:
r.push_back(localView.index(Localidx)); // global indices
}
}
- // Delete duplicate elements
+ // Delete duplicate elements.
// first remove consecutive (adjacent) duplicates
auto last = std::unique(r.begin(), r.end());
r.erase(last, r.end());
@@ -683,9 +723,13 @@ public:
}
+ /**
+ @brief Method that computes the integral mean of a discrete function in the function space determined by the
+ coefficient vector of the basis representation.
+ */
auto integralMean(VectorCT& coeffVector)
{
- auto GVFunction = Dune::Functions::makeDiscreteGlobalBasisFunction<Dune::FieldVector<double,dim>>(basis_,coeffVector);
+ auto GVFunction = Dune::Functions::makeDiscreteGlobalBasisFunction<Dune::FieldVector<double,dim> >(basis_,coeffVector);
auto localfun = localFunction(GVFunction);
auto localView = basis_.localView();
@@ -699,8 +743,8 @@ public:
localView.bind(element);
localfun.bind(element);
const auto& localFiniteElement = localView.tree().child(0).finiteElement();
-
- // int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1)+5; //TEST
+
+ // int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1)+5; //TEST
int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1);
const auto& quad = Dune::QuadratureRules<double, dim>::rule(element.type(), orderQR);
@@ -709,7 +753,7 @@ public:
const auto& quadPos = quadPoint.position();
const double integrationElement = element.geometry().integrationElement(quadPos);
area += quadPoint.weight() * integrationElement;
-
+
r += localfun(quadPos) * quadPoint.weight() * integrationElement;
}
}
@@ -717,6 +761,9 @@ public:
}
+ /**
+ @brief Compute and substract the integral mean to a given basis coefficient vector.
+ */
auto subtractIntegralMean(VectorCT& coeffVector)
{
// Subtract correct integral mean from each associated component function
@@ -734,400 +781,385 @@ public:
/**
- * @brief Solve corrector problem for different right-hand sides.
- * Choose between solvers:
- * 1 : CG-Solver
- * 2 : GMRES
- * 3 : QR (default)
- * 4 : UMFPACK
- *
- * @return auto
+ * @brief Solve the corrector problem for different right-hand sides.
+ * Choose between solvers:
+ * 1 : CHOLMOD (default)
+ * 2 : UMFPACK
+ * 3 : GMRES
+ * 4 : CG
+ * 5 : QR
+ *
+ * @return auto
*/
auto solve()
{
-
- bool set_oneBasisFunction_Zero = parameterSet_.get<bool>("set_oneBasisFunction_Zero", false);
- bool substract_integralMean = false;
- if(parameterSet_.get<bool>("set_IntegralZero", false))
- {
- set_oneBasisFunction_Zero = true;
- substract_integralMean = true;
- }
- // set one basis-function to zero
- if(set_oneBasisFunction_Zero)
- setOneBaseFunctionToZero();
-
- //TEST: Compute Condition Number (Can be very expensive !)
- const bool verbose = true;
- const unsigned int arppp_a_verbosity_level = 2;
- const unsigned int pia_verbosity_level = 1;
- if(parameterSet_.get<bool>("print_conditionNumber", false))
- {
- MatrixInfo<MatrixCT> matrixInfo(stiffnessMatrix_,verbose,arppp_a_verbosity_level,pia_verbosity_level);
- std::cout << "Get condition number of Stiffness_CE: " << matrixInfo.getCond2(true) << std::endl;
- }
+ bool set_oneBasisFunction_Zero = parameterSet_.get<bool>("set_oneBasisFunction_Zero", false);
+ bool substract_integralMean = false;
+ if(parameterSet_.get<bool>("set_IntegralZero", false))
+ {
+ set_oneBasisFunction_Zero = true;
+ substract_integralMean = true;
+ }
+ // set one basis-function to zero
+ if(set_oneBasisFunction_Zero)
+ setOneBaseFunctionToZero();
+
+ // Option: compute the condition number (This can be very expensive and serves mainly for debugging purposes.)
+ const bool verbose = true;
+ const unsigned int arppp_a_verbosity_level = 2;
+ const unsigned int pia_verbosity_level = 1;
+ if(parameterSet_.get<bool>("print_conditionNumber", false))
+ {
+ MatrixInfo<MatrixCT> matrixInfo(stiffnessMatrix_,verbose,arppp_a_verbosity_level,pia_verbosity_level);
+ std::cout << "Get condition number of Stiffness_CE: " << matrixInfo.getCond2(true) << std::endl;
+ }
+
+ unsigned int Solvertype = parameterSet_.get<unsigned int>("Solvertype", 1);
+ unsigned int Solver_verbosity = parameterSet_.get<unsigned int>("Solver_verbosity", 2);
+
+ x_1_.resize(load_alpha1_.size());
+ x_2_.resize(load_alpha2_.size());
+ x_3_.resize(load_alpha3_.size());
- unsigned int Solvertype = parameterSet_.get<unsigned int>("Solvertype", 4);
- unsigned int Solver_verbosity = parameterSet_.get<unsigned int>("Solver_verbosity", 2);
+ // printmatrix(std::cout, stiffnessMatrix_, "StiffnessMatrix", "--");
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "start corrector solver..." << std::endl;
+ Dune::Timer SolverTimer;
+ ////////////////////////////////////////////////////////////////////////////////////
+ if (Solvertype==1) // CHOLMOD - SOLVER
+ {
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "------------ CHOLMOD - Solver ------------" << std::endl;
+ // log_ << "solveLinearSystems: We use CHOLMOD solver.\n";
+
+ if(basis_.dimension() > 1e6)
+ std::cout << "WARNING: Using a direct solver with " << basis_.dimension() << " degrees of freedom may be not feasible or slow." << std::endl;
+
+ Dune::Solvers::CholmodSolver<MatrixCT,VectorCT> solver;
+
+ // Since we have the same stiffness-matrix for three different right-hand sides,
+ // we first use the factorization of CHOLMOD once and use it to repeatedly solve for multiple right-hand sides.
+ // In my measurements this reduced the runtime to about ~30% compared to using 'setProblem' multiple times.
+
+ // set first solution vector
+ solver.setSolutionVector(x_1_);
+ // Factorize the matrix
+ solver.setMatrix(stiffnessMatrix_);
+ solver.factorize();
+ // set first right-hand side
+ solver.setRhs(load_alpha1_);
+ // solve for first vector
+ solver.solve();
+
+ // set second solution vector
+ solver.setSolutionVector(x_2_);
+ // set second right-hand side
+ solver.setRhs(load_alpha2_);
+ // solve for second vector
+ solver.solve();
+
+ // set third solution vector
+ solver.setSolutionVector(x_3_);
+ // set third right-hand side
+ solver.setRhs(load_alpha3_);
+ // solve for third vector
+ solver.solve();
+ // log_ << "Solver-type used: " <<" CHOLMOD-Solver" << std::endl;
+ }
+ ////////////////////////////////////////////////////////////////////////////////////
+ else if (Solvertype==2) // UMFPACK - SOLVER
+ {
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "------------ UMFPACK - Solver ------------" << std::endl;
+ // log_ << "solveLinearSystems: We use UMFPACK solver.\n";
+
+ if(basis_.dimension() > 1e5)
+ std::cout << "WARNING: Using a direct solver with " << basis_.dimension() << " degrees of freedom may be not feasible or slow." << std::endl;
+
+ Dune::Solvers::UMFPackSolver<MatrixCT,VectorCT> solver;
+ solver.setProblem(stiffnessMatrix_,x_1_,load_alpha1_);
+ // solver.preprocess();
+ solver.solve();
+ solver.setProblem(stiffnessMatrix_,x_2_,load_alpha2_);
+ // solver.preprocess();
+ solver.solve();
+ solver.setProblem(stiffnessMatrix_,x_3_,load_alpha3_);
+ // solver.preprocess();
+ solver.solve();
+ // log_ << "Solver-type used: " <<" UMFPACK-Solver" << std::endl;
+ }
+ ////////////////////////////////////////////////////////////////////////////////////
+ else if (Solvertype==3) // GMRES - SOLVER
+ {
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "------------ GMRES - Solver ------------" << std::endl;
- // --- set initial values for solver
+ // --- set initial values for solver (only for the iterativer solvers)
x_1_ = load_alpha1_;
x_2_ = load_alpha2_;
x_3_ = load_alpha3_;
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "start corrector solver..." << std::endl;
- Dune::Timer SolverTimer;
- if (Solvertype==1) // CG - SOLVER
- {
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "------------ CG - Solver ------------" << std::endl;
- Dune::MatrixAdapter<MatrixCT, VectorCT, VectorCT> op(stiffnessMatrix_);
-
- // Sequential incomplete LU decomposition as the preconditioner
- Dune::SeqILU<MatrixCT, VectorCT, VectorCT> ilu0(stiffnessMatrix_,1.0);
- int iter = parameterSet_.get<double>("iterations_CG", 999);
- // Preconditioned conjugate-gradient solver
- Dune::CGSolver<VectorCT> solver(op,
- ilu0, //NULL,
- 1e-8, // desired residual reduction factorlack
- iter, // maximum number of iterations
- Solver_verbosity,
- true // Try to estimate condition_number
- ); // verbosity of the solver
- Dune::InverseOperatorResult statistics;
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "solve linear system for x_1.\n";
- solver.apply(x_1_, load_alpha1_, statistics);
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "solve linear system for x_2.\n";
- solver.apply(x_2_, load_alpha2_, statistics);
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "solve linear system for x_3.\n";
- solver.apply(x_3_, load_alpha3_, statistics);
- // log_ << "Solver-type used: " <<" CG-Solver" << std::endl;
-
-
- if(parameterSet_.get<bool>("printMicroOutput ", false) && Solver_verbosity > 0)
- {
- std::cout << "statistics.converged " << statistics.converged << std::endl;
- std::cout << "statistics.condition_estimate: " << statistics.condition_estimate << std::endl;
- std::cout << "statistics.iterations: " << statistics.iterations << std::endl;
- }
- }
- ////////////////////////////////////////////////////////////////////////////////////
- else if (Solvertype==2) // GMRES - SOLVER
+ // Turn the matrix into a linear operator
+ Dune::MatrixAdapter<MatrixCT,VectorCT,VectorCT> stiffnessOperator(stiffnessMatrix_);
+
+ // Fancy (but only) way to not have a preconditioner at all
+ Dune::Richardson<VectorCT,VectorCT> preconditioner(1.0);
+
+ // Construct the iterative solver
+ Dune::RestartedGMResSolver<VectorCT> solver(
+ stiffnessOperator, // Operator to invert
+ preconditioner, // Preconditioner
+ 1e-10, // Desired residual reduction factor
+ 500, // Number of iterations between restarts,
+ // here: no restarting
+ 500, // Maximum number of iterations
+ Solver_verbosity); // Verbosity of the solver
+
+ // Object storing some statistics about the solving process
+ Dune::InverseOperatorResult statistics;
+
+ // solve for different Correctors (alpha = 1,2,3)
+ solver.apply(x_1_, load_alpha1_, statistics); //load_alpha1 now contains the corresponding residual!!
+ solver.apply(x_2_, load_alpha2_, statistics);
+ solver.apply(x_3_, load_alpha3_, statistics);
+ // log_ << "Solver-type used: " <<" GMRES-Solver" << std::endl;
+ if(parameterSet_.get<bool>("printMicroOutput", false) && Solver_verbosity > 0)
{
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "------------ GMRES - Solver ------------" << std::endl;
- // Turn the matrix into a linear operator
- Dune::MatrixAdapter<MatrixCT,VectorCT,VectorCT> stiffnessOperator(stiffnessMatrix_);
-
- // Fancy (but only) way to not have a preconditioner at all
- Dune::Richardson<VectorCT,VectorCT> preconditioner(1.0);
-
- // Construct the iterative solver
- Dune::RestartedGMResSolver<VectorCT> solver(
- stiffnessOperator, // Operator to invert
- preconditioner, // Preconditioner
- 1e-10, // Desired residual reduction factor
- 500, // Number of iterations between restarts,
- // here: no restarting
- 500, // Maximum number of iterations
- Solver_verbosity); // Verbosity of the solver
-
- // Object storing some statistics about the solving process
- Dune::InverseOperatorResult statistics;
-
- // solve for different Correctors (alpha = 1,2,3)
- solver.apply(x_1_, load_alpha1_, statistics); //load_alpha1 now contains the corresponding residual!!
- solver.apply(x_2_, load_alpha2_, statistics);
- solver.apply(x_3_, load_alpha3_, statistics);
- // log_ << "Solver-type used: " <<" GMRES-Solver" << std::endl;
- if(parameterSet_.get<bool>("printMicroOutput ", false) && Solver_verbosity > 0)
- {
- std::cout << "statistics.converged " << statistics.converged << std::endl;
- std::cout << "statistics.condition_estimate: " << statistics.condition_estimate << std::endl;
- std::cout << "statistics.iterations: " << statistics.iterations << std::endl;
- }
+ std::cout << "statistics.converged " << statistics.converged << std::endl;
+ std::cout << "statistics.condition_estimate: " << statistics.condition_estimate << std::endl;
+ std::cout << "statistics.iterations: " << statistics.iterations << std::endl;
}
- ////////////////////////////////////////////////////////////////////////////////////
- else if ( Solvertype==3)// QR - SOLVER
- {
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "------------ QR - Solver ------------" << std::endl;
- // log_ << "solveLinearSystems: We use QR solver.\n";
- //TODO install suitesparse
- Dune::SPQR<MatrixCT> sPQR(stiffnessMatrix_);
- // sPQR.setVerbosity(1);
- sPQR.setVerbosity(Solver_verbosity);
- Dune::InverseOperatorResult statisticsQR;
-
- if(basis_.dimension() > 1e5)
- std::cout << "WARNING: Using a direct solver with " << basis_.dimension() << " degrees of freedom may be not feasible or slow." << std::endl;
-
- sPQR.apply(x_1_, load_alpha1_, statisticsQR);
- // std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- // std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- // std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- sPQR.apply(x_2_, load_alpha2_, statisticsQR);
- // std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- // std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- // std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- sPQR.apply(x_3_, load_alpha3_, statisticsQR);
- // std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- // std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- // std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- // log_ << "Solver-type used: " <<" QR-Solver" << std::endl;
- if(parameterSet_.get<bool>("printMicroOutput ", false) && Solver_verbosity > 0)
- {
- std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- }
+ }
+ ////////////////////////////////////////////////////////////////////////////////////
+ else if (Solvertype==4) // CG - SOLVER
+ {
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "------------ CG - Solver ------------" << std::endl;
- }
- ////////////////////////////////////////////////////////////////////////////////////
- else if (Solvertype==4)// UMFPACK - SOLVER
- {
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "------------ UMFPACK - Solver ------------" << std::endl;
- // log_ << "solveLinearSystems: We use UMFPACK solver.\n";
-
-
- // #if HAVE_UMFPACK
- // std::cout << "HAVE_UMFPACK TRUE" << std::endl;
- // #else
- // std::cout << "HAVE_UMFPACK FALSE" << std::endl;
- // #endif
-
- // #if HAVE_SUITESPARSE_UMFPACK
- // std::cout << "HAVE_SUITESPARSE_UMFPACK TRUE" << std::endl;
- // #else
- // std::cout << "HAVE_SUITESPARSE_UMFPACK FALSE" << std::endl;
- // #endif
-
-
-
- if(basis_.dimension() > 1e5)
- std::cout << "WARNING: Using a direct solver with " << basis_.dimension() << " degrees of freedom may be not feasible or slow." << std::endl;
-
- Dune::Solvers::UMFPackSolver<MatrixCT,VectorCT> solver;
- solver.setProblem(stiffnessMatrix_,x_1_,load_alpha1_);
- // solver.preprocess();
- solver.solve();
- solver.setProblem(stiffnessMatrix_,x_2_,load_alpha2_);
- // solver.preprocess();
- solver.solve();
- solver.setProblem(stiffnessMatrix_,x_3_,load_alpha3_);
- // solver.preprocess();
- solver.solve();
- // sPQR.apply(x_1, load_alpha1, statisticsQR);
- // std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- // std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- // std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- // sPQR.apply(x_2, load_alpha2, statisticsQR);
- // std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- // std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- // std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- // sPQR.apply(x_3, load_alpha3, statisticsQR);
- // std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- // std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- // std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- // log_ << "Solver-type used: " <<" UMFPACK-Solver" << std::endl;
- }
- ////////////////////////////////////////////////////////////////////////////////////
- else if (Solvertype==5)// CHOLDMOD - SOLVER
- {
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "------------ CHOLMOD - Solver ------------" << std::endl;
- // log_ << "solveLinearSystems: We use CHOLMOD solver.\n";
-
- if(basis_.dimension() > 1e5)
- std::cout << "WARNING: Using a direct solver with " << basis_.dimension() << " degrees of freedom may be not feasible or slow." << std::endl;
-
- Dune::Solvers::CholmodSolver<MatrixCT,VectorCT> solver;
- solver.setProblem(stiffnessMatrix_,x_1_,load_alpha1_);
- // solver.preprocess();
- solver.solve();
- solver.setProblem(stiffnessMatrix_,x_2_,load_alpha2_);
- // solver.preprocess();
- solver.solve();
- solver.setProblem(stiffnessMatrix_,x_3_,load_alpha3_);
- // solver.preprocess();
- solver.solve();
- // sPQR.apply(x_1, load_alpha1, statisticsQR);
- // std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- // std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- // std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- // sPQR.apply(x_2, load_alpha2, statisticsQR);
- // std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- // std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- // std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- // sPQR.apply(x_3, load_alpha3, statisticsQR);
- // std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
- // std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
- // std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
- // log_ << "Solver-type used: " <<" CHOLMOD-Solver" << std::endl;
- }
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "Corrector computation finished. Time required:" << SolverTimer.elapsed() << std::endl;
-
- ////////////////////////////////////////////////////////////////////////////////////
- // Extract phi_alpha & M_alpha coefficients
- ////////////////////////////////////////////////////////////////////////////////////
- phi_1_.resize(basis_.size());
- phi_1_ = 0;
- phi_2_.resize(basis_.size());
- phi_2_ = 0;
- phi_3_.resize(basis_.size());
- phi_3_ = 0;
-
- for(size_t i=0; i<basis_.size(); i++)
+ // --- set initial values for solver (only for the iterativer solvers)
+ x_1_ = load_alpha1_;
+ x_2_ = load_alpha2_;
+ x_3_ = load_alpha3_;
+
+ Dune::MatrixAdapter<MatrixCT, VectorCT, VectorCT> op(stiffnessMatrix_);
+
+ // Sequential incomplete LU decomposition as the preconditioner
+ Dune::SeqILU<MatrixCT, VectorCT, VectorCT> ilu0(stiffnessMatrix_,1.0);
+ int iter = parameterSet_.get<double>("iterations_CG", 999);
+ // Preconditioned conjugate-gradient solver
+ Dune::CGSolver<VectorCT> solver(op,
+ ilu0, //NULL,
+ 1e-8, // desired residual reduction factorlack
+ iter, // maximum number of iterations
+ Solver_verbosity,
+ true // Try to estimate condition_number
+ ); // verbosity of the solver
+ Dune::InverseOperatorResult statistics;
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "solve linear system for x_1.\n";
+ solver.apply(x_1_, load_alpha1_, statistics);
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "solve linear system for x_2.\n";
+ solver.apply(x_2_, load_alpha2_, statistics);
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "solve linear system for x_3.\n";
+ solver.apply(x_3_, load_alpha3_, statistics);
+ // log_ << "Solver-type used: " <<" CG-Solver" << std::endl;
+
+
+ if(parameterSet_.get<bool>("printMicroOutput", false) && Solver_verbosity > 0)
{
- phi_1_[i] = x_1_[i];
- phi_2_[i] = x_2_[i];
- phi_3_[i] = x_3_[i];
+ std::cout << "statistics.converged " << statistics.converged << std::endl;
+ std::cout << "statistics.condition_estimate: " << statistics.condition_estimate << std::endl;
+ std::cout << "statistics.iterations: " << statistics.iterations << std::endl;
}
- for(size_t i=0; i<3; i++)
+ }
+ ////////////////////////////////////////////////////////////////////////////////////
+ else if ( Solvertype=5) // QR - SOLVER
+ {
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "------------ QR - Solver ------------" << std::endl;
+ // log_ << "solveLinearSystems: We use QR solver.\n";
+
+ //TODO install suitesparse
+ Dune::SPQR<MatrixCT> sPQR(stiffnessMatrix_);
+ // sPQR.setVerbosity(1);
+ sPQR.setVerbosity(Solver_verbosity);
+ Dune::InverseOperatorResult statisticsQR;
+
+ if(basis_.dimension() > 1e5)
+ std::cout << "WARNING: Using a direct solver with " << basis_.dimension() << " degrees of freedom may be not feasible or slow." << std::endl;
+
+ sPQR.apply(x_1_, load_alpha1_, statisticsQR);
+ sPQR.apply(x_2_, load_alpha2_, statisticsQR);
+ sPQR.apply(x_3_, load_alpha3_, statisticsQR);
+ // log_ << "Solver-type used: " <<" QR-Solver" << std::endl;
+ if(parameterSet_.get<bool>("printMicroOutput ", false) && Solver_verbosity > 0)
{
- m_1_[i] = x_1_[phiOffset_+i];
- m_2_[i] = x_2_[phiOffset_+i];
- m_3_[i] = x_3_[phiOffset_+i];
+ std::cout << "statistics.converged " << statisticsQR.converged << std::endl;
+ std::cout << "statistics.condition_estimate: " << statisticsQR.condition_estimate << std::endl;
+ std::cout << "statistics.iterations: " << statisticsQR.iterations << std::endl;
}
- // assemble M_alpha's (actually iota(M_alpha) )
+ }
+ ////////////////////////////////////////////////////////////////////////////////////
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "Corrector computation finished. Time required:" << SolverTimer.elapsed() << std::endl;
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ // Extract phi_alpha & M_alpha coefficients
+ ////////////////////////////////////////////////////////////////////////////////////
+ phi_1_.resize(basis_.size());
+ phi_1_ = 0;
+ phi_2_.resize(basis_.size());
+ phi_2_ = 0;
+ phi_3_.resize(basis_.size());
+ phi_3_ = 0;
+
+ for(size_t i=0; i<basis_.size(); i++)
+ {
+ phi_1_[i] = x_1_[i];
+ phi_2_[i] = x_2_[i];
+ phi_3_[i] = x_3_[i];
+ }
+ for(size_t i=0; i<3; i++)
+ {
+ m_1_[i] = x_1_[phiOffset_+i];
+ m_2_[i] = x_2_[phiOffset_+i];
+ m_3_[i] = x_3_[phiOffset_+i];
+ }
+ // assemble M_alpha's (actually iota(M_alpha) )
- for (auto& matrix : mContainer)
- matrix = 0;
+ for (auto& matrix : mContainer)
+ matrix = 0;
- for(size_t i=0; i<3; i++)
- {
- mContainer[0] += m_1_[i]*voigtToMatrix(matrixBasis_[i]);
- mContainer[1] += m_2_[i]*voigtToMatrix(matrixBasis_[i]);
- mContainer[2] += m_3_[i]*voigtToMatrix(matrixBasis_[i]);
- }
+ for(size_t i=0; i<3; i++)
+ {
+ mContainer[0] += m_1_[i]*voigtToMatrix(matrixBasis_[i]);
+ mContainer[1] += m_2_[i]*voigtToMatrix(matrixBasis_[i]);
+ mContainer[2] += m_3_[i]*voigtToMatrix(matrixBasis_[i]);
+ }
- if(parameterSet_.get<bool>("print_corrector_matrices", false))
- {
- std::cout << "--- plot corrector-Matrices M_alpha --- " << std::endl;
- printmatrix(std::cout, mContainer[0], "Corrector-Matrix M_1", "--");
- printmatrix(std::cout, mContainer[1], "Corrector-Matrix M_2", "--");
- printmatrix(std::cout, mContainer[2], "Corrector-Matrix M_3", "--");
- }
+ if(parameterSet_.get<bool>("print_corrector_matrices", false))
+ {
+ std::cout << "--- plot corrector-Matrices M_alpha --- " << std::endl;
+ printmatrix(std::cout, mContainer[0], "Corrector-Matrix M_1", "--");
+ printmatrix(std::cout, mContainer[1], "Corrector-Matrix M_2", "--");
+ printmatrix(std::cout, mContainer[2], "Corrector-Matrix M_3", "--");
+ }
- if(parameterSet_.get<bool>("writeCorrectorsVTK", false))
- this->writeCorrectorsVTK(parameterSet_.get<int>("gridLevel", 0));
+ if(parameterSet_.get<bool>("writeCorrectorsVTK", false))
+ this->writeCorrectorsVTK(parameterSet_.get<int>("gridLevel", 0));
- // log_ << "---------- OUTPUT ----------" << std::endl;
- // log_ << " --------------------" << std::endl;
- // log_ << "Corrector-Matrix M_1: \n" << mContainer[0] << std::endl;
- // log_ << " --------------------" << std::endl;
- // log_ << "Corrector-Matrix M_2: \n" << mContainer[1] << std::endl;
- // log_ << " --------------------" << std::endl;
- // log_ << "Corrector-Matrix M_3: \n" << mContainer[2] << std::endl;
- // log_ << " --------------------" << std::endl;
+ // log_ << "---------- OUTPUT ----------" << std::endl;
+ // log_ << " --------------------" << std::endl;
+ // log_ << "Corrector-Matrix M_1: \n" << mContainer[0] << std::endl;
+ // log_ << " --------------------" << std::endl;
+ // log_ << "Corrector-Matrix M_2: \n" << mContainer[1] << std::endl;
+ // log_ << " --------------------" << std::endl;
+ // log_ << "Corrector-Matrix M_3: \n" << mContainer[2] << std::endl;
+ // log_ << " --------------------" << std::endl;
- if(parameterSet_.get<bool>("write_IntegralMean", false))
+ if(parameterSet_.get<bool>("write_IntegralMean", false))
+ {
+ std::cout << "check integralMean phi_1: " << std::endl;
+ auto A = integralMean(phi_1_);
+ for(size_t i=0; i<3; i++)
{
- std::cout << "check integralMean phi_1: " << std::endl;
- auto A = integralMean(phi_1_);
- for(size_t i=0; i<3; i++)
- {
- std::cout << "Integral-Mean phi_1 : " << A[i] << std::endl;
- }
+ std::cout << "Integral-Mean phi_1 : " << A[i] << std::endl;
}
- if(substract_integralMean)
+ }
+ if(substract_integralMean)
+ {
+ Dune::Timer integralMeanTimer;
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << " --- subtracting integralMean --- " << std::endl;
+ subtractIntegralMean(phi_1_);
+ subtractIntegralMean(phi_2_);
+ subtractIntegralMean(phi_3_);
+ subtractIntegralMean(x_1_);
+ subtractIntegralMean(x_2_);
+ subtractIntegralMean(x_3_);
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "substract integral mean took " << integralMeanTimer.elapsed() << " seconds " << std::endl;
+ //////////////////////////////////////////
+ // Check Integral-mean again:
+ //////////////////////////////////////////
+ if(parameterSet_.get<bool>("write_IntegralMean", false))
{
- Dune::Timer integralMeanTimer;
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << " --- subtracting integralMean --- " << std::endl;
- subtractIntegralMean(phi_1_);
- subtractIntegralMean(phi_2_);
- subtractIntegralMean(phi_3_);
- subtractIntegralMean(x_1_);
- subtractIntegralMean(x_2_);
- subtractIntegralMean(x_3_);
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "substract integral mean took " << integralMeanTimer.elapsed() << " seconds " << std::endl;
- //////////////////////////////////////////
- // Check Integral-mean again:
- //////////////////////////////////////////
- if(parameterSet_.get<bool>("write_IntegralMean", false))
- {
- auto A = integralMean(phi_1_);
- for(size_t i=0; i<3; i++)
- {
- std::cout << "Integral-Mean phi_1 (Check again) : " << A[i] << std::endl;
- }
- }
+ auto A = integralMean(phi_1_);
+ for(size_t i=0; i<3; i++)
+ {
+ std::cout << "Integral-Mean phi_1 (Check again) : " << A[i] << std::endl;
+ }
}
- /////////////////////////////////////////////////////////
- // Write Solution (Corrector Coefficients) in Logs
- /////////////////////////////////////////////////////////
- // if(parameterSet_.get<bool>("write_corrector_phi1", false))
- // {
- // log_ << "\nSolution of Corrector problems:\n";
- // log_ << "\n Corrector_phi1:\n";
- // log_ << x_1_ << std::endl;
- // }
- // if(parameterSet_.get<bool>("write_corrector_phi2", false))
- // {
- // log_ << "-----------------------------------------------------";
- // log_ << "\n Corrector_phi2:\n";
- // log_ << x_2_ << std::endl;
- // }
- // if(parameterSet_.get<bool>("write_corrector_phi3", false))
- // {
- // log_ << "-----------------------------------------------------";
- // log_ << "\n Corrector_phi3:\n";
- // log_ << x_3_ << std::endl;
- // }
+ }
+ /////////////////////////////////////////////////////////
+ // Write Solution (Corrector Coefficients) in Logs
+ /////////////////////////////////////////////////////////
+ // if(parameterSet_.get<bool>("write_corrector_phi1", false))
+ // {
+ // log_ << "\nSolution of Corrector problems:\n";
+ // log_ << "\n Corrector_phi1:\n";
+ // log_ << x_1_ << std::endl;
+ // }
+ // if(parameterSet_.get<bool>("write_corrector_phi2", false))
+ // {
+ // log_ << "-----------------------------------------------------";
+ // log_ << "\n Corrector_phi2:\n";
+ // log_ << x_2_ << std::endl;
+ // }
+ // if(parameterSet_.get<bool>("write_corrector_phi3", false))
+ // {
+ // log_ << "-----------------------------------------------------";
+ // log_ << "\n Corrector_phi3:\n";
+ // log_ << x_3_ << std::endl;
+ // }
}
/**
* @brief Write correctors as grid functions to VTK.
- *
+ *
* @param level GridLevel
*/
void writeCorrectorsVTK(const int level)
{
- std::string baseName = parameterSet_.get("baseName", "CellProblem-result");
- std::string vtkOutputName = parameterSet_.get("resultPath", "../../outputs") + "/" + baseName;
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "Write Correctors to VTK with Filename:" << vtkOutputName << std::endl;
-
-
- int subsamplingRefinement = parameterSet_.get<int>("subsamplingRefinement", 2);
- Dune::SubsamplingVTKWriter<typename Basis::GridView> vtkWriter(basis_.gridView(), Dune::refinementLevels(subsamplingRefinement));
- // Dune::VTKWriter<typename Basis::GridView> vtkWriter(basis_.gridView());
-
- vtkWriter.addVertexData(
- Dune::Functions::makeDiscreteGlobalBasisFunction<VectorRT>(basis_, phi_1_),
- Dune::VTK::FieldInfo("Corrector phi_1 level"+ std::to_string(level) , Dune::VTK::FieldInfo::Type::vector, dim));
- vtkWriter.addVertexData(
- Dune::Functions::makeDiscreteGlobalBasisFunction<VectorRT>(basis_, phi_2_),
- Dune::VTK::FieldInfo("Corrector phi_2 level"+ std::to_string(level) , Dune::VTK::FieldInfo::Type::vector, dim));
- vtkWriter.addVertexData(
- Dune::Functions::makeDiscreteGlobalBasisFunction<VectorRT>(basis_, phi_3_),
- Dune::VTK::FieldInfo("Corrector phi_3 level"+ std::to_string(level) , Dune::VTK::FieldInfo::Type::vector, dim));
- vtkWriter.write(vtkOutputName + "Correctors-level"+ std::to_string(level));
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "wrote Corrector-VTK data to file: " + vtkOutputName + "-level" + std::to_string(level) << std::endl;
+ std::string baseName = parameterSet_.get("baseName", "CellProblem-result");
+ std::string vtkOutputName = parameterSet_.get("resultPath", "../../outputs") + "/" + baseName;
+ if (parameterSet_.get<bool>("printMicroOutput", false))
+ std::cout << "Write Correctors to VTK with Filename:" << vtkOutputName << std::endl;
+
+
+ int subsamplingRefinement = parameterSet_.get<int>("subsamplingRefinement", 2);
+ Dune::SubsamplingVTKWriter<typename Basis::GridView> vtkWriter(basis_.gridView(), Dune::refinementLevels(subsamplingRefinement));
+ // Dune::VTKWriter<typename Basis::GridView> vtkWriter(basis_.gridView());
+
+ vtkWriter.addVertexData(
+ Dune::Functions::makeDiscreteGlobalBasisFunction<VectorRT>(basis_, phi_1_),
+ Dune::VTK::FieldInfo("Corrector phi_1 level"+ std::to_string(level) , Dune::VTK::FieldInfo::Type::vector, dim));
+ vtkWriter.addVertexData(
+ Dune::Functions::makeDiscreteGlobalBasisFunction<VectorRT>(basis_, phi_2_),
+ Dune::VTK::FieldInfo("Corrector phi_2 level"+ std::to_string(level) , Dune::VTK::FieldInfo::Type::vector, dim));
+ vtkWriter.addVertexData(
+ Dune::Functions::makeDiscreteGlobalBasisFunction<VectorRT>(basis_, phi_3_),
+ Dune::VTK::FieldInfo("Corrector phi_3 level"+ std::to_string(level) , Dune::VTK::FieldInfo::Type::vector, dim));
+ vtkWriter.write(vtkOutputName + "Correctors-level"+ std::to_string(level));
+ if (parameterSet_.get<bool>("printMicroOutput ", false))
+ std::cout << "wrote Corrector-VTK data to file: " + vtkOutputName + "-level" + std::to_string(level) << std::endl;
}
// -----------------------------------------------------------------
// --- Compute norms of the corrector functions:
void computeNorms()
{
- computeL2Norm();
- computeL2SymGrad();
- std::cout<< "Frobenius-Norm of M1_: " << mContainer[0].frobenius_norm() << std::endl;
- std::cout<< "Frobenius-Norm of M2_: " << mContainer[1].frobenius_norm() << std::endl;
- std::cout<< "Frobenius-Norm of M3_: " << mContainer[2].frobenius_norm() << std::endl;
+ computeL2Norm();
+ computeL2SymGrad();
+ std::cout<< "Frobenius-Norm of M1_: " << mContainer[0].frobenius_norm() << std::endl;
+ std::cout<< "Frobenius-Norm of M2_: " << mContainer[1].frobenius_norm() << std::endl;
+ std::cout<< "Frobenius-Norm of M3_: " << mContainer[2].frobenius_norm() << std::endl;
}
void computeL2Norm()
@@ -1195,23 +1227,23 @@ public:
localfun_3.bind(element);
auto geometry = element.geometry();
- const auto& localFiniteElement = localView.tree().child(0).finiteElement();
+ const auto& localFiniteElement = localView.tree().child(0).finiteElement();
- int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1 );
+ int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1 );
const auto& quad = Dune::QuadratureRules<double,dim>::rule(element.type(), orderQR);
for (const auto& quadPoint : quad)
{
- const auto& quadPos = quadPoint.position();
- const auto integrationElement = geometry.integrationElement(quadPos);
+ const auto& quadPos = quadPoint.position();
+ const auto integrationElement = geometry.integrationElement(quadPos);
- auto scaledSymGrad1 = sym(crossSectionDirectionScaling(1.0/(material_->gamma_), localfun_1(quadPos)));
- auto scaledSymGrad2 = sym(crossSectionDirectionScaling(1.0/(material_->gamma_), localfun_2(quadPos)));
- auto scaledSymGrad3 = sym(crossSectionDirectionScaling(1.0/(material_->gamma_), localfun_3(quadPos)));
+ auto scaledSymGrad1 = sym(crossSectionDirectionScaling(1.0/(material_->gamma_), localfun_1(quadPos)));
+ auto scaledSymGrad2 = sym(crossSectionDirectionScaling(1.0/(material_->gamma_), localfun_2(quadPos)));
+ auto scaledSymGrad3 = sym(crossSectionDirectionScaling(1.0/(material_->gamma_), localfun_3(quadPos)));
- error_1 += scalarProduct(scaledSymGrad1,scaledSymGrad1) * quadPoint.weight() * integrationElement;
- error_2 += scalarProduct(scaledSymGrad2,scaledSymGrad2) * quadPoint.weight() * integrationElement;
- error_3 += scalarProduct(scaledSymGrad3,scaledSymGrad3) * quadPoint.weight() * integrationElement;
+ error_1 += scalarProduct(scaledSymGrad1,scaledSymGrad1) * quadPoint.weight() * integrationElement;
+ error_2 += scalarProduct(scaledSymGrad2,scaledSymGrad2) * quadPoint.weight() * integrationElement;
+ error_3 += scalarProduct(scaledSymGrad3,scaledSymGrad3) * quadPoint.weight() * integrationElement;
}
}
std::cout << "L2-Norm(Symmetric scaled gradient of Corrector phi_1): " << sqrt(error_1) << std::endl;
@@ -1221,10 +1253,10 @@ public:
}
/**
- * @brief Test: Check orthogonality relation (75) in
+ * @brief Test: Check orthogonality relation (75) in
* [Böhnlein,Neukamm,Padilla-Garza,Sander - A homogenized bending theory for prestrained plates].
- *
- * @return auto
+ *
+ * @return auto
*/
auto check_Orthogonality()
{
@@ -1242,20 +1274,20 @@ public:
const std::array<decltype(localfun_1)*,3> phiDerContainer = {&localfun_1 , &localfun_2 , &localfun_3 };
auto localIndicatorFunction = material_->getLocalIndicatorFunction();
-
+
for(int a=0; a<3; a++)
- for(int b=0; b<3; b++)
- {
- double energy = 0.0;
+ for(int b=0; b<3; b++)
+ {
+ double energy = 0.0;
- auto DerPhi1 = *phiDerContainer[a];
- auto DerPhi2 = *phiDerContainer[b];
-
- auto matrixFieldGGVF = Dune::Functions::makeGridViewFunction(x3MatrixBasisContainer_[a], basis_.gridView());
- auto matrixFieldG = localFunction(matrixFieldGGVF);
+ auto DerPhi1 = *phiDerContainer[a];
+ auto DerPhi2 = *phiDerContainer[b];
- for (const auto& e : elements(basis_.gridView()))
- {
+ auto matrixFieldGGVF = Dune::Functions::makeGridViewFunction(x3MatrixBasisContainer_[a], basis_.gridView());
+ auto matrixFieldG = localFunction(matrixFieldGGVF);
+
+ for (const auto& e : elements(basis_.gridView()))
+ {
localView.bind(e);
matrixFieldG.bind(e);
DerPhi1.bind(e);
@@ -1271,33 +1303,33 @@ public:
const auto& quad = Dune::QuadratureRules<double, dim>::rule(e.type(), orderQR);
- for (const auto& quadPoint : quad)
+ for (const auto& quadPoint : quad)
{
- const auto& quadPos = quadPoint.position();
- const double integrationElement = geometry.integrationElement(quadPos);
-
- auto Chi = sym(crossSectionDirectionScaling(1.0/(material_->gamma_), DerPhi2(quadPos))) + mContainer[b];
+ const auto& quadPos = quadPoint.position();
+ const double integrationElement = geometry.integrationElement(quadPos);
+
+ auto Chi = sym(crossSectionDirectionScaling(1.0/(material_->gamma_), DerPhi2(quadPos))) + mContainer[b];
- const auto strain1 = symVoigt(crossSectionDirectionScaling(1.0/(material_->gamma_), DerPhi1(quadPos)));
-
- auto G = matrixFieldG(quadPos);
+ const auto strain1 = symVoigt(crossSectionDirectionScaling(1.0/(material_->gamma_), DerPhi1(quadPos)));
- auto tmp = matrixToVoigt(G + mContainer[a]) + strain1;
+ auto G = matrixFieldG(quadPos);
- double energyDensity= voigtScalarProduct(material_->applyElasticityTensor(tmp,localIndicatorFunction(quadPos)),symVoigt(Chi));
+ auto tmp = matrixToVoigt(G + mContainer[a]) + strain1;
- elementEnergy += energyDensity * quadPoint.weight() * integrationElement;
+ double energyDensity= voigtScalarProduct(material_->applyElasticityTensor(tmp,localIndicatorFunction(quadPos)),symVoigt(Chi));
+
+ elementEnergy += energyDensity * quadPoint.weight() * integrationElement;
}
energy += elementEnergy;
- }
- if(parameterSet_.get<bool>("print_debug", false))
- std::cout << "check_Orthogonality:" << "("<< a <<"," << b << "): " << energy << std::endl;
+ }
+ if(parameterSet_.get<bool>("print_debug", false))
+ std::cout << "check_Orthogonality:" << "("<< a <<"," << b << "): " << energy << std::endl;
- if(energy > 1e-1)
- std::cout << "WARNING: check_Orthogonality failed! apparently orthogonality (75) not satisfied on discrete level" << std::endl;
+ if(energy > 1e-1)
+ std::cout << "WARNING: check_Orthogonality failed! apparently orthogonality (75) not satisfied on discrete level" << std::endl;
- }
+ }
std::cout << "Time required for orthogonality check: " << orthogonalityTimer.elapsed() << std::endl;
return 0;
}
@@ -1310,35 +1342,42 @@ public:
auto localView = basis_.localView();
+ bool symmetryFlag = false;
+
for (const auto& element : elements(basis_.gridView()))
{
localView.bind(element);
const auto localPhiOffset = localView.size();
for(size_t i=0; i<localPhiOffset; i++)
- for(size_t j=0; j<localPhiOffset; j++ )
- {
+ for(size_t j=0; j<localPhiOffset; j++ )
+ {
auto row = localView.index(i);
auto col = localView.index(j);
if(abs( stiffnessMatrix_[row][col] - stiffnessMatrix_[col][row]) > 1e-12 )
- std::cout << "STIFFNESS MATRIX NOT SYMMETRIC!!!" << std::endl;
- }
+ symmetryFlag = true;
+ // std::cout << "STIFFNESS MATRIX NOT SYMMETRIC!!!" << std::endl;
+ }
for(size_t i=0; i<localPhiOffset; i++)
- for(size_t m=0; m<3; m++)
- {
+ for(size_t m=0; m<3; m++)
+ {
auto row = localView.index(i);
if(abs( stiffnessMatrix_[row][phiOffset_+m] - stiffnessMatrix_[phiOffset_+m][row]) > 1e-12 )
- std::cout << "STIFFNESS MATRIX NOT SYMMETRIC!!!" << std::endl;
+ symmetryFlag = true;
+ // std::cout << "STIFFNESS MATRIX NOT SYMMETRIC!!!" << std::endl;
- }
+ }
for(size_t m=0; m<3; m++ )
- for(size_t n=0; n<3; n++ )
- {
+ for(size_t n=0; n<3; n++ )
+ {
if(abs(stiffnessMatrix_[phiOffset_+m][phiOffset_+n] - stiffnessMatrix_[phiOffset_+n][phiOffset_+m]) > 1e-12 )
- std::cout << "STIFFNESS MATRIX NOT SYMMETRIC!!!" << std::endl;
- }
+ symmetryFlag = true;
+ // std::cout << "STIFFNESS MATRIX NOT SYMMETRIC!!!" << std::endl;
+ }
}
- std::cout << "--- Symmetry test passed ---" << std::endl;
+
+ if(symmetryFlag)
+ std::cout << "STIFFNESS MATRIX NOT SYMMETRIC!!!" << std::endl;
}
diff --git a/dune/microstructure/EffectiveQuantitiesComputer.hh b/dune/microstructure/EffectiveQuantitiesComputer.hh
index d6476cceaa5b81290346addaa53e14b0f89f8d02..99b60e2e76c4e707f8c996663b9ed36c2742b910 100644
--- a/dune/microstructure/EffectiveQuantitiesComputer.hh
+++ b/dune/microstructure/EffectiveQuantitiesComputer.hh
@@ -2,7 +2,7 @@
#define DUNE_MICROSTRUCTURE_EFFECTIVEQUANTITIESCOMPUTER_HH
#include <dune/common/parametertree.hh>
-#include <dune/istl/eigenvalue/test/matrixinfo.hh> // TEST: compute condition Number
+#include <dune/istl/eigenvalue/test/matrixinfo.hh> // TEST: compute condition Number
#include <dune/istl/io.hh>
#include <dune/istl/matrix.hh>
#include <dune/microstructure/matrix_operations.hh>
@@ -20,248 +20,248 @@ template <class Basis, class Material>
class EffectiveQuantitiesComputer {
public:
- static const int dimworld = 3;
- static const int dim = Basis::GridView::dimension;
- using Domain = typename CorrectorComputer<Basis,Material>::Domain;
- using VectorRT = typename CorrectorComputer<Basis,Material>::VectorRT;
- using MatrixRT = typename CorrectorComputer<Basis,Material>::MatrixRT;
- using Func2Tensor = typename CorrectorComputer<Basis,Material>::Func2Tensor;
- using FuncVector = typename CorrectorComputer<Basis,Material>::FuncVector;
- using VectorCT = typename CorrectorComputer<Basis,Material>::VectorCT;
- using Func2int = std::function< int(const Domain&) >;
- using MatrixPhase = std::function< MatrixRT(const int&) >;
+ static const int dimworld = 3;
+ static const int dim = Basis::GridView::dimension;
+ using Domain = typename CorrectorComputer<Basis,Material>::Domain;
+ using VectorRT = typename CorrectorComputer<Basis,Material>::VectorRT;
+ using MatrixRT = typename CorrectorComputer<Basis,Material>::MatrixRT;
+ using Func2Tensor = typename CorrectorComputer<Basis,Material>::Func2Tensor;
+ using FuncVector = typename CorrectorComputer<Basis,Material>::FuncVector;
+ using VectorCT = typename CorrectorComputer<Basis,Material>::VectorCT;
+ using Func2int = std::function< int (const Domain&) >;
+ using MatrixPhase = std::function< MatrixRT(const int&) >;
protected:
- // CorrectorComputer<Basis,Material>& correctorComputer_;
- std::shared_ptr<CorrectorComputer<Basis,Material>> correctorComputer_;
- // const Material& material_; //Get this from correctorComputer_ this is now an std::shared_ptr.
+ // CorrectorComputer<Basis,Material>& correctorComputer_;
+ std::shared_ptr<CorrectorComputer<Basis,Material> > correctorComputer_;
+ // const Material& material_; //Get this from correctorComputer_ this is now an std::shared_ptr.
public:
- MatrixRT Qeff_; // Effective moduli COEFFICIENTS
- VectorRT Bhat_;
- VectorRT Beff_; // Effective prestrain COEFFICIENTS
-
-
- ///////////////////////////////
- // constructor
- ///////////////////////////////
- // EffectiveQuantitiesComputer(CorrectorComputer<Basis,Material>& correctorComputer,
- // const Material& material)
- // : correctorComputer_(correctorComputer),
- // material_(material)
- // {}
- // EffectiveQuantitiesComputer(CorrectorComputer<Basis,Material>& correctorComputer)
- // : correctorComputer_(correctorComputer)
- // {}
- EffectiveQuantitiesComputer(std::shared_ptr<CorrectorComputer<Basis,Material>> correctorComputer)
- : correctorComputer_(correctorComputer)
- {}
+ MatrixRT Qeff_; // Effective moduli COEFFICIENTS
+ VectorRT Bhat_;
+ VectorRT Beff_; // Effective prestrain COEFFICIENTS
- ///////////////////////////////
- // Getter
- ///////////////////////////////
- // CorrectorComputer<Basis,Material> getCorrectorComputer(){return correctorComputer_;}
- CorrectorComputer<Basis,Material> getCorrectorComputer(){return *correctorComputer_;}
+ ///////////////////////////////
+ // constructor
+ ///////////////////////////////
+ // EffectiveQuantitiesComputer(CorrectorComputer<Basis,Material>& correctorComputer,
+ // const Material& material)
+ // : correctorComputer_(correctorComputer),
+ // material_(material)
+ // {}
+ // EffectiveQuantitiesComputer(CorrectorComputer<Basis,Material>& correctorComputer)
+ // : correctorComputer_(correctorComputer)
+ // {}
+ EffectiveQuantitiesComputer(std::shared_ptr<CorrectorComputer<Basis,Material> > correctorComputer)
+ : correctorComputer_(correctorComputer)
+ {}
- const shared_ptr<Basis> getBasis() {return *correctorComputer_.getBasis();}
+ ///////////////////////////////
+ // Getter
+ ///////////////////////////////
+ // CorrectorComputer<Basis,Material> getCorrectorComputer(){return correctorComputer_;}
+ CorrectorComputer<Basis,Material> getCorrectorComputer(){return *correctorComputer_;}
- auto getQeff(){return Qeff_;}
- auto getBeff(){return Beff_;}
+ const shared_ptr<Basis> getBasis() {return *correctorComputer_.getBasis();}
- void updateCorrectorComputer(std::shared_ptr<CorrectorComputer<Basis,Material>> correctorComputer)
- {
- correctorComputer_ = correctorComputer;
- }
+ auto getQeff(){return Qeff_;}
+ auto getBeff(){return Beff_;}
+
+
+ void updateCorrectorComputer(std::shared_ptr<CorrectorComputer<Basis,Material> > correctorComputer)
+ {
+ correctorComputer_ = correctorComputer;
+ }
// -----------------------------------------------------------------
// --- Compute Effective Quantities
- void computeEffectiveQuantities()
- {
- Dune::Timer effectiveQuantitiesTimer;
- Dune::ParameterTree parameterSet = correctorComputer_->getParameterSet();
-
- if (parameterSet.get<bool>("printMicroOutput ", false))
- std::cout << "starting effective quantities computation..." << std::endl;
-
-
- auto MContainer = correctorComputer_->getMcontainer();
- auto MatrixBasisContainer = correctorComputer_->getMatrixBasiscontainer();
- auto x3MatrixBasisContainer = correctorComputer_->getx3MatrixBasiscontainer();
-
- auto gamma = correctorComputer_->getGamma();
- auto basis = *correctorComputer_->getBasis();
-
-
- shared_ptr<VectorCT> phiBasis[3] = {correctorComputer_->getCorr_phi1(),
- correctorComputer_->getCorr_phi2(),
- correctorComputer_->getCorr_phi3()
- };
-
- auto localIndicatorFunction = (correctorComputer_->material_)->getLocalIndicatorFunction();
-
- Qeff_ = 0 ;
- Bhat_ = 0;
-
- for(size_t a=0; a < 3; a++)
- for(size_t b=0; b < 3; b++)
- {
- double energy = 0.0;
- double prestrain = 0.0;
- auto localView = basis.localView();
+ void computeEffectiveQuantities()
+ {
+ Dune::Timer effectiveQuantitiesTimer;
+ Dune::ParameterTree parameterSet = correctorComputer_->getParameterSet();
- auto GVFunc_a = derivative(Dune::Functions::makeDiscreteGlobalBasisFunction<VectorRT>(basis,*phiBasis[a]));
- auto localfun_a = localFunction(GVFunc_a);
+ if (parameterSet.get<bool>("printMicroOutput ", false))
+ std::cout << "starting effective quantities computation..." << std::endl;
- auto matrixFieldG1GVF = Dune::Functions::makeGridViewFunction(x3MatrixBasisContainer[a], basis.gridView());
- auto matrixFieldG1 = localFunction(matrixFieldG1GVF);
- auto matrixFieldG2GVF = Dune::Functions::makeGridViewFunction(x3MatrixBasisContainer[b], basis.gridView());
- auto matrixFieldG2 = localFunction(matrixFieldG2GVF);
- for (const auto& element : elements(basis.gridView()))
- {
- localView.bind(element);
- matrixFieldG1.bind(element);
- matrixFieldG2.bind(element);
- localfun_a.bind(element);
-
- localIndicatorFunction.bind(element);
-
- double elementEnergy = 0.0;
- double elementPrestrain = 0.0;
-
- auto geometry = element.geometry();
- const auto& localFiniteElement = localView.tree().child(0).finiteElement();
-
- int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1);
-
- const auto& quad = Dune::QuadratureRules<double, dim>::rule(element.type(), orderQR);
-
- for (const auto& quadPoint : quad)
- {
- const auto& quadPos = quadPoint.position();
- const double integrationElement = geometry.integrationElement(quadPos);
-
- auto Chi1 = sym(crossSectionDirectionScaling(1.0/gamma, localfun_a(quadPos))) + MContainer[a];
-
- auto G1 = matrixFieldG1(quadPos);
- auto G2 = matrixFieldG2(quadPos);
-
- auto X1 = matrixToVoigt(G1 + Chi1);
-
- double energyDensity= voigtScalarProduct((correctorComputer_->material_)->applyElasticityTensor(X1,localIndicatorFunction(quadPos)), matrixToVoigt(sym(G2)));
-
- elementEnergy += energyDensity * quadPoint.weight() * integrationElement; // quad[quadPoint].weight() ???
- if (b==0)
- {
- auto prestrainPhaseValue = (correctorComputer_->material_)->prestrain(localIndicatorFunction(quadPos),element.geometry().global(quadPos));
- auto value = voigtScalarProduct((correctorComputer_->material_)->applyElasticityTensor(X1,localIndicatorFunction(quadPos)),matrixToVoigt(sym(prestrainPhaseValue)));
-
- elementPrestrain += value * quadPoint.weight() * integrationElement;
- }
- }
- energy += elementEnergy;
- prestrain += elementPrestrain;
-
- }
- Qeff_[a][b] = energy;
- if (b==0)
- Bhat_[a] = prestrain;
- }
- if(parameterSet.get<bool>("print_debug", false))
- {
- printmatrix(std::cout, Qeff_, "Qeff_", "--");
- printvector(std::cout, Bhat_, "Bhat_", "--");
- }
+ auto MContainer = correctorComputer_->getMcontainer();
+ auto MatrixBasisContainer = correctorComputer_->getMatrixBasiscontainer();
+ auto x3MatrixBasisContainer = correctorComputer_->getx3MatrixBasiscontainer();
- ///////////////////////////////
- // Compute effective Prestrain B_eff (by solving linear system)
- //////////////////////////////
-
- // std::cout << "------- Information about Q matrix -----" << std::endl; // TODO
- // MatrixInfo<MatrixRT> matrixInfo(Qeff_,true,2,1);
- // std::cout << "----------------------------------------" << std::endl;
- Qeff_.solve(Beff_,Bhat_);
- if(parameterSet.get<bool>("print_debug", false))
- printvector(std::cout, Beff_, "Beff_", "--");
-
- //LOG-Output
- // auto& log = *(correctorComputer_.getLog());
- // log << "--- Effective moduli --- " << std::endl;
- // log << "Qeff_: \n" << Qeff_ << std::endl;
- // log << "------------------------ " << std::endl;
- // log << "--- Prestrain Output --- " << std::endl;
- // log << "Bhat_: " << Bhat_ << std::endl;
- // log << "Beff_: " << Beff_ << " (Effective Prestrain)" << std::endl;
- // log << "------------------------ " << std::endl;
-
- // std::cout << std::setprecision(std::numeric_limits<float_50>::digits10) << higherPrecEnergy << std::endl;
- if (parameterSet.get<bool>("printMicroOutput ", false))
- std::cout << "Time required to solve for effective quantities: " << effectiveQuantitiesTimer.elapsed() << std::endl;
- return ;
- }
+ auto gamma = correctorComputer_->getGamma();
+ auto basis = *correctorComputer_->getBasis();
- // -----------------------------------------------------------------
- // --- write Data to .Txt-File for Matlab / Optimization-Code
- void writeEffectiveQuantitiesToTxt(std::string outputPath)
- {
- std::cout << "write effective quantities as .txt files to output folder..." << std::endl;
- writeMatrixToMatlab(Qeff_, outputPath + "/QMatrix.txt");
- // write effective Prestrain in Matrix for Output
- Dune::FieldMatrix<double,1,3> BeffMat;
- BeffMat[0] = Beff_;
- writeMatrixToMatlab(BeffMat, outputPath + "/BMatrix.txt");
- return;
- }
+ shared_ptr<VectorCT> phiBasis[3] = {correctorComputer_->getCorr_phi1(),
+ correctorComputer_->getCorr_phi2(),
+ correctorComputer_->getCorr_phi3()
+ };
- template<class MatrixFunction>
- double energySP(const MatrixFunction& matrixFieldFuncA,
- const MatrixFunction& matrixFieldFuncB)
- {
+ auto localIndicatorFunction = (correctorComputer_->material_)->getLocalIndicatorFunction();
+
+ Qeff_ = 0 ;
+ Bhat_ = 0;
+
+ for(size_t a=0; a < 3; a++)
+ for(size_t b=0; b < 3; b++)
+ {
double energy = 0.0;
- auto mu_ = *correctorComputer_->getMu();
- auto lambda_ = *correctorComputer_->getLambda();
- auto gamma = correctorComputer_->getGamma();
- auto basis = *correctorComputer_->getBasis();
+ double prestrain = 0.0;
auto localView = basis.localView();
- auto localIndicatorFunction = (correctorComputer_->material_)->getLocalIndicatorFunction();
+ auto GVFunc_a = derivative(Dune::Functions::makeDiscreteGlobalBasisFunction<VectorRT>(basis,*phiBasis[a]));
+ auto localfun_a = localFunction(GVFunc_a);
- auto matrixFieldAGVF = Dune::Functions::makeGridViewFunction(matrixFieldFuncA, basis.gridView());
- auto matrixFieldA = localFunction(matrixFieldAGVF);
- auto matrixFieldBGVF = Dune::Functions::makeGridViewFunction(matrixFieldFuncB, basis.gridView());
- auto matrixFieldB = localFunction(matrixFieldBGVF);
+ auto matrixFieldG1GVF = Dune::Functions::makeGridViewFunction(x3MatrixBasisContainer[a], basis.gridView());
+ auto matrixFieldG1 = localFunction(matrixFieldG1GVF);
+ auto matrixFieldG2GVF = Dune::Functions::makeGridViewFunction(x3MatrixBasisContainer[b], basis.gridView());
+ auto matrixFieldG2 = localFunction(matrixFieldG2GVF);
- for (const auto& e : elements(basis.gridView()))
+ for (const auto& element : elements(basis.gridView()))
{
- localView.bind(e);
- matrixFieldA.bind(e);
- matrixFieldB.bind(e);
- localIndicatorFunction.bind(e);
+ localView.bind(element);
+ matrixFieldG1.bind(element);
+ matrixFieldG2.bind(element);
+ localfun_a.bind(element);
- double elementEnergy = 0.0;
+ localIndicatorFunction.bind(element);
- auto geometry = e.geometry();
- const auto& localFiniteElement = localView.tree().child(0).finiteElement();
+ double elementEnergy = 0.0;
+ double elementPrestrain = 0.0;
- int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1);
- const auto& quad = Dune::QuadratureRules<double, dim>::rule(e.type(), orderQR);
- for (const auto& quadPoint : quad)
- {
- const auto& quadPos = quadPoint.position();
- const double integrationElement = geometry.integrationElement(quadPos);
+ auto geometry = element.geometry();
+ const auto& localFiniteElement = localView.tree().child(0).finiteElement();
+
+ int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1);
- double energyDensity= scalarProduct((correctorComputer_->material_)->applyElasticityTensor(matrixFieldA(quadPos),localIndicatorFunction(quadPos)),sym(matrixFieldB(quadPos)));
+ const auto& quad = Dune::QuadratureRules<double, dim>::rule(element.type(), orderQR);
- elementEnergy += energyDensity * quadPoint.weight() * integrationElement;
+ for (const auto& quadPoint : quad)
+ {
+ const auto& quadPos = quadPoint.position();
+ const double integrationElement = geometry.integrationElement(quadPos);
+
+ auto Chi1 = sym(crossSectionDirectionScaling(1.0/gamma, localfun_a(quadPos))) + MContainer[a];
+
+ auto G1 = matrixFieldG1(quadPos);
+ auto G2 = matrixFieldG2(quadPos);
+
+ auto X1 = matrixToVoigt(G1 + Chi1);
+
+ double energyDensity= voigtScalarProduct((correctorComputer_->material_)->applyElasticityTensor(X1,localIndicatorFunction(quadPos)), matrixToVoigt(sym(G2)));
+
+ elementEnergy += energyDensity * quadPoint.weight() * integrationElement; // quad[quadPoint].weight() ???
+ if (b==0)
+ {
+ auto prestrainPhaseValue = (correctorComputer_->material_)->prestrain(localIndicatorFunction(quadPos),element.geometry().global(quadPos));
+ auto value = voigtScalarProduct((correctorComputer_->material_)->applyElasticityTensor(X1,localIndicatorFunction(quadPos)),matrixToVoigt(sym(prestrainPhaseValue)));
+
+ elementPrestrain += value * quadPoint.weight() * integrationElement;
}
- energy += elementEnergy;
+ }
+ energy += elementEnergy;
+ prestrain += elementPrestrain;
+
}
- return energy;
+ Qeff_[a][b] = energy;
+ if (b==0)
+ Bhat_[a] = prestrain;
+ }
+ if(parameterSet.get<bool>("print_debug", false))
+ {
+ printmatrix(std::cout, Qeff_, "Qeff_", "--");
+ printvector(std::cout, Bhat_, "Bhat_", "--");
+ }
+
+ ///////////////////////////////
+ // Compute effective Prestrain B_eff (by solving linear system)
+ //////////////////////////////
+
+ // std::cout << "------- Information about Q matrix -----" << std::endl; // TODO
+ // MatrixInfo<MatrixRT> matrixInfo(Qeff_,true,2,1);
+ // std::cout << "----------------------------------------" << std::endl;
+ Qeff_.solve(Beff_,Bhat_);
+ if(parameterSet.get<bool>("print_debug", false))
+ printvector(std::cout, Beff_, "Beff_", "--");
+
+ //LOG-Output
+ // auto& log = *(correctorComputer_.getLog());
+ // log << "--- Effective moduli --- " << std::endl;
+ // log << "Qeff_: \n" << Qeff_ << std::endl;
+ // log << "------------------------ " << std::endl;
+ // log << "--- Prestrain Output --- " << std::endl;
+ // log << "Bhat_: " << Bhat_ << std::endl;
+ // log << "Beff_: " << Beff_ << " (Effective Prestrain)" << std::endl;
+ // log << "------------------------ " << std::endl;
+
+ // std::cout << std::setprecision(std::numeric_limits<float_50>::digits10) << higherPrecEnergy << std::endl;
+ if (parameterSet.get<bool>("printMicroOutput ", false))
+ std::cout << "Time required to solve for effective quantities: " << effectiveQuantitiesTimer.elapsed() << std::endl;
+ return ;
+ }
+
+
+ // -----------------------------------------------------------------
+ // --- write Data to .Txt-File for Matlab / Optimization-Code
+ void writeEffectiveQuantitiesToTxt(std::string outputPath)
+ {
+ std::cout << "write effective quantities as .txt files to output folder..." << std::endl;
+ writeMatrixToMatlab(Qeff_, outputPath + "/QMatrix.txt");
+ // write effective Prestrain in Matrix for Output
+ Dune::FieldMatrix<double,1,3> BeffMat;
+ BeffMat[0] = Beff_;
+ writeMatrixToMatlab(BeffMat, outputPath + "/BMatrix.txt");
+ return;
+ }
+
+ template<class MatrixFunction>
+ double energySP(const MatrixFunction& matrixFieldFuncA,
+ const MatrixFunction& matrixFieldFuncB)
+ {
+ double energy = 0.0;
+ auto mu_ = *correctorComputer_->getMu();
+ auto lambda_ = *correctorComputer_->getLambda();
+ auto gamma = correctorComputer_->getGamma();
+ auto basis = *correctorComputer_->getBasis();
+ auto localView = basis.localView();
+
+ auto localIndicatorFunction = (correctorComputer_->material_)->getLocalIndicatorFunction();
+
+ auto matrixFieldAGVF = Dune::Functions::makeGridViewFunction(matrixFieldFuncA, basis.gridView());
+ auto matrixFieldA = localFunction(matrixFieldAGVF);
+ auto matrixFieldBGVF = Dune::Functions::makeGridViewFunction(matrixFieldFuncB, basis.gridView());
+ auto matrixFieldB = localFunction(matrixFieldBGVF);
+
+ for (const auto& e : elements(basis.gridView()))
+ {
+ localView.bind(e);
+ matrixFieldA.bind(e);
+ matrixFieldB.bind(e);
+ localIndicatorFunction.bind(e);
+
+ double elementEnergy = 0.0;
+
+ auto geometry = e.geometry();
+ const auto& localFiniteElement = localView.tree().child(0).finiteElement();
+
+ int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1);
+ const auto& quad = Dune::QuadratureRules<double, dim>::rule(e.type(), orderQR);
+ for (const auto& quadPoint : quad)
+ {
+ const auto& quadPos = quadPoint.position();
+ const double integrationElement = geometry.integrationElement(quadPos);
+
+ double energyDensity= scalarProduct((correctorComputer_->material_)->applyElasticityTensor(matrixFieldA(quadPos),localIndicatorFunction(quadPos)),sym(matrixFieldB(quadPos)));
+
+ elementEnergy += energyDensity * quadPoint.weight() * integrationElement;
+ }
+ energy += elementEnergy;
}
+ return energy;
+ }
}; // end class
diff --git a/dune/microstructure/bendingisometryaddons.hh b/dune/microstructure/bendingisometryaddons.hh
new file mode 100644
index 0000000000000000000000000000000000000000..06a798ad4d031ecc203d331b485adef4e02e048c
--- /dev/null
+++ b/dune/microstructure/bendingisometryaddons.hh
@@ -0,0 +1,409 @@
+#ifndef DUNE_MICROSTRUCTURE_BENDINGISOMETRYADDONS_HH
+#define DUNE_MICROSTRUCTURE_BENDINGISOMETRYADDONS_HH
+
+/**
+ This serves as an interface for passing into an interpolation method
+ of a hermite basis.
+ */
+template<class K,class ValueGridViewFunction,class DerivativeGridViewFunction>
+class GlobalIsometryFunction
+{
+public:
+ GlobalIsometryFunction(ValueGridViewFunction& valueGVF,
+ DerivativeGridViewFunction& derGVF)
+ : valueGridViewFunction_(valueGVF),
+ derivativeGridViewFunction_(derGVF)
+ {}
+
+ Dune::FieldVector<K,3> operator() (const Dune::FieldVector<K,2>& x) const
+ {
+ return valueGridViewFunction_(x);
+ }
+
+ /**
+ * \brief Obtain derivative function
+ */
+ friend auto derivative(const GlobalIsometryFunction& p)
+ {
+ return p.derivativeGridViewFunction_;
+ }
+
+ ValueGridViewFunction& valueGridViewFunction_;
+ DerivativeGridViewFunction& derivativeGridViewFunction_;
+};
+
+/**
+ * @brief Test that checks the isometry constraint at the nodes of the Triangulation
+ */
+template<class LocalDiscreteKirchhoffFunction, class GridView>
+auto nodewiseIsometryTest(LocalDiscreteKirchhoffFunction& deformationFunction,
+ GridView& gridView)
+{
+ for (const auto &element : elements(gridView))
+ {
+ auto geometry = element.geometry();
+ deformationFunction.bind(element);
+ // evaluate at nodes:
+ for (int i=0; i<geometry.corners(); i++)
+ {
+ auto rot = deformationFunction.evaluateDerivative(geometry.local(geometry.corner(i)));
+ Dune::FieldMatrix<double,2,2> I = Dune::ScaledIdentityMatrix<double,2>(1);
+ auto diff = (rot.transposed()*rot) - I;
+ // std::cout << "diff.frobenius_norm():" << diff.frobenius_norm() << std::endl;
+ if(diff.frobenius_norm()>1e-8)
+ DUNE_THROW(Dune::Exception, "Nodewise Isometry Test failed! with error"<< diff.frobenius_norm());
+ }
+ }
+ std::cout << "nodewiseIsometryTest passed." << std::endl;
+}
+
+/**
+ * @brief Test that checks the isometry constraint at the nodes of the Triangulation
+ * - For a differentiable gridview function.
+ */
+template<class DeformationFunction>
+auto nodewiseIsometryTest(DeformationFunction& deformationGridViewFunction)
+{
+ auto localDeformation = localFunction(deformationGridViewFunction);
+ auto localRotation = derivative(localDeformation);
+ auto gridView = deformationGridViewFunction.basis().gridView();
+ for (const auto &element : elements(gridView))
+ {
+ auto geometry = element.geometry();
+ localDeformation.bind(element);
+ localRotation.bind(element);
+
+ // evaluate at nodes:
+ for (int i=0; i<geometry.corners(); i++)
+ {
+ auto rot = localRotation(geometry.local(geometry.corner(i)));
+ auto product = rot.transposed()*rot;
+
+ Dune::FieldMatrix<double,2,2> I = Dune::ScaledIdentityMatrix<double,2>(1);
+ auto diff = (rot.transposed()*rot) - I;
+
+ if(diff.frobenius_norm()>1e-8)
+ DUNE_THROW(Dune::Exception, "Nodewise Isometry Test failed! with error"<< diff.frobenius_norm());
+ }
+ }
+ std::cout << "Node-wise IsometryTest passed." << std::endl;
+}
+
+
+
+
+/**
+ * @brief Compute L2/L1-Isometry Error: | (\nabla u)^T (\nabla u) - I | over the grid.
+ */
+template<class LocalDiscreteKirchhoffFunction, class GridView>
+auto isometryError(LocalDiscreteKirchhoffFunction& deformationFunction,
+ GridView& gridView)
+{
+ std::cout << "measuring isometry error ... " << std::endl;
+
+ int quadOrder = 3;
+ constexpr static int gridDim = LocalDiscreteKirchhoffFunction::gridDim;
+
+ // The error to be compute
+ double isometryL2Error = 0;
+ double isometryL1Error = 0;
+
+ Dune::FieldMatrix<double,2,2> IdentityMatrix = Dune::ScaledIdentityMatrix<double,2>(1);
+ for (auto&& element : elements(gridView))
+ {
+ deformationFunction.bind(element);
+
+ const auto &quadRule = Dune::QuadratureRules<double, gridDim>::rule(element.type(), quadOrder);
+
+ for (auto quadPoint : quadRule)
+ {
+ auto quadPos = quadPoint.position();
+ const auto integrationElement = element.geometry().integrationElement(quadPos);
+ const auto weight = quadPoint.weight();
+
+ auto numDir = deformationFunction.evaluateDerivative(quadPos);
+ auto isoValue = numDir.transposed() * numDir;
+ // printmatrix(std::cout, isoValue , "isoValue: ", "--");
+
+ // integrate error
+ isometryL2Error += (isoValue - IdentityMatrix).frobenius_norm2() * weight * integrationElement;
+ isometryL1Error += (isoValue - IdentityMatrix).frobenius_norm() * weight * integrationElement;
+ }
+ }
+ std::cout << std::setprecision(6);
+ std::cout << "L2-Isometry-error: " << std::sqrt(isometryL2Error)
+ << " "
+ << "L1-Isometry-error: " << isometryL1Error << std::endl;
+
+ std::vector<double> errorVector = {isometryL1Error,isometryL2Error};
+
+ return errorVector;
+}
+
+
+
+
+/**
+ * @brief Measure L2/H1-Error
+ * between discrete deformation and analytical reference solution.
+ */
+template<class LocalDiscreteKirchhoffFunction, class GridView>
+auto measureAnalyticalError(LocalDiscreteKirchhoffFunction& deformationFunction,
+ GridView& gridView,
+ Python::Module pyModule)
+{
+ std::cout << "measuring analytical error ... " << std::endl;
+
+ // Get reference solution
+ // auto referenceSolution = Python::makeDifferentiableFunction<Dune::FieldVector<double,3>(Dune::FieldVector<double,2>)>(pyModule.get("displacement"), pyModule.get("displacementGradient"));
+ // auto referenceDerivative = derivative(referenceSolution);
+ auto referenceSolution = Python::makeDifferentiableFunction<Dune::FieldVector<double,3>(Dune::FieldVector<double,2>)>(pyModule.get("deformation"), pyModule.get("deformationGradient"));
+ auto referenceDerivative = derivative(referenceSolution);
+
+ // Trapezoidal-rule:
+ // std::vector<Dune::QuadraturePoint<double,2>> quadRule = { {{0.0,0.0}, 1.0/6.0}, {{1.0,0.0}, 1.0/6.0}, {{0.0,1.0}, 1.0/6.0} };
+ int quadOrder = 4;
+ constexpr static int gridDim = LocalDiscreteKirchhoffFunction::gridDim;
+
+ // The error to be computed
+ double l2ErrorSquared = 0;
+ double h1ErrorSquared = 0;
+
+
+ //TEST
+ // QuadratureRuleKey quadKey(2,6);
+
+ for (auto&& element : elements(gridView))
+ {
+ deformationFunction.bind(element);
+
+ const auto &quadRule = Dune::QuadratureRules<double, gridDim>::rule(element.type(), quadOrder);
+
+ for (auto quadPoint : quadRule)
+ {
+ auto quadPos = quadPoint.position();
+ const auto integrationElement = element.geometry().integrationElement(quadPos);
+ const auto weight = quadPoint.weight();
+
+ auto refValue = referenceSolution(element.geometry().global(quadPos));
+ auto numValue = deformationFunction.evaluate(quadPos).globalCoordinates();
+
+ auto numDir = deformationFunction.evaluateDerivative(quadPos);
+ auto refDir = referenceDerivative(element.geometry().global(quadPos));
+ auto diff = numDir - refDir;
+
+ // integrate error
+ l2ErrorSquared += (numValue - refValue)* (numValue - refValue) * weight * integrationElement;
+ h1ErrorSquared += diff.frobenius_norm2() * weight * integrationElement;
+ }
+ }
+ std::cout << "elements: " << gridView.size(0)
+ << " "
+ << "L2-error: " << std::sqrt(l2ErrorSquared)
+ << " ";
+ std::cout << "H1-error: " << std::sqrt(h1ErrorSquared) << std::endl;
+
+ std::vector<double> errorVector = {std::sqrt(l2ErrorSquared), std::sqrt(h1ErrorSquared)};
+
+ return errorVector;
+}
+
+// DEBUG: conversion of coefficient vectors (back & forth)
+template<class Coefficients, class DeformationBasis, class CoefficientBasis, class IsometryCoefficients>
+void coefficientConversionTest(const Coefficients& coefficients,
+ const DeformationBasis& deformationBasis,
+ const CoefficientBasis& coefficientBasis)
+{
+ Coefficients x_convert = coefficients;
+ IsometryCoefficients isometryCoefficientsTMP(coefficientBasis.size());
+ Dune::GFE::Impl::vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x_convert,isometryCoefficientsTMP);
+ Dune::GFE::Impl::isometryToVectorCoefficientMap(deformationBasis,coefficientBasis,x_convert,isometryCoefficientsTMP);
+ //Check difference
+ for(int i=0; i<coefficients.size(); i++)
+ {
+ if((coefficients[i]-x_convert[i]).two_norm() > 1e-4)
+ std::cout << "Coefficient conversion failed! with x[i]-x_convert[i]:" << coefficients[i]-x_convert[i] << std::endl;
+ }
+}
+
+
+
+
+// template<class LocalDiscreteKirchhoffFunction, class NormalBasis>
+// auto computeDiscreteSurfaceNormal(LocalDiscreteKirchhoffFunction& deformationFunction,
+// const NormalBasis& normalBasis)
+// {
+// std::vector<Dune::FieldVector<double,3> > discreteNormalVectorCoefficients(normalBasis.size());
+
+// auto localView = normalBasis.localView();
+// for (auto&& element : elements(normalBasis.gridView()))
+// {
+// auto geometry = element.geometry();
+
+// localView.bind(element);
+// const auto nSf = localView.tree().child(0).finiteElement().localBasis().size();
+
+// deformationFunction.bind(element);
+
+// for (int i=0; i<geometry.corners(); i++)
+// {
+// auto numDir = deformationFunction.evaluateDerivative(geometry.local(geometry.corner(i)));
+// // printmatrix(std::cout, numDir, "numDir: ", "--");
+
+// //cross product to get normal vector.
+// Dune::FieldVector<double,3> normal = {numDir[1][0]*numDir[2][1] - numDir[1][1]*numDir[2][0],
+// numDir[2][0]*numDir[0][1] - numDir[0][0]*numDir[2][1],
+// numDir[0][0]*numDir[1][1] - numDir[1][0]*numDir[0][1]};
+// // printvector(std::cout, normal, "discrete normal:" , "--");
+// for (size_t k=0; k < 3; k++)
+// for (size_t i=0; i < nSf; i++)
+// {
+// size_t localIdx = localView.tree().child(k).localIndex(i); // hier i:leafIdx
+// size_t globalIdx = localView.index(localIdx);
+// discreteNormalVectorCoefficients[globalIdx] = normal[k];
+// }
+// }
+// }
+
+// return discreteNormalVectorCoefficients;
+
+// // does not work:
+// // auto surfaceNormalDiscrete = Dune::Functions::makeDiscreteGlobalBasisFunction<Dune::FieldVector<double,3>>(normalBasis, discreteNormalVectorCoefficients);
+// // return surfaceNormalDiscrete;
+// }
+
+
+
+/**
+ * @brief Comparison of different function definitions for debugging purposes.
+ */
+template<class LocalDiscreteKirchhoffFunction,class DeformationFunction, class GridView>
+auto compare(LocalDiscreteKirchhoffFunction& kirchhoffFunction,
+ DeformationFunction& deformationFunction,
+ GridView& gridView)
+{
+ std::cout << "COMPARE:" << std::endl;
+ auto localDeformation = localFunction(deformationFunction);
+ auto rotation = derivative(deformationFunction);
+ auto localRotation = localFunction(rotation);
+ auto localRotation_2 = derivative(localDeformation);
+ for (const auto &element : elements(gridView))
+ {
+ auto geometry = element.geometry();
+
+ kirchhoffFunction.bind(element);
+ localDeformation.bind(element);
+ localRotation.bind(element);
+ localRotation_2.bind(element);
+
+ //evaluate at nodes:
+ for (int i=0; i<geometry.corners(); i++)
+ {
+ auto kirchhoffOut = kirchhoffFunction.evaluate(geometry.local(geometry.corner(i))).globalCoordinates();
+ auto KirchhoffRot = kirchhoffFunction.evaluateDerivative(geometry.local(geometry.corner(i)));
+ //Test
+ const auto& jacobian = geometry.jacobian(geometry.corner(i));
+ printmatrix(std::cout, jacobian, "jacobianInverse:", "--");
+
+ auto defOut = localDeformation(geometry.local(geometry.corner(i)));
+ auto defRot = localRotation(geometry.local(geometry.corner(i)));
+ auto defRot_2 = localRotation_2(geometry.local(geometry.corner(i)));
+
+ printvector(std::cout, kirchhoffOut, "kirchhoffOut:", "--");
+ printvector(std::cout, defOut, "defOut:", "--");
+ printmatrix(std::cout, KirchhoffRot, "KirchhoffRot:", "--");
+ printmatrix(std::cout, defRot, "defRot:", "--");
+ }
+ }
+}
+
+
+
+// /**
+// * @brief Symmetric part of a matrix.
+// *
+// * @param M
+// * @return FieldMatrix<RT,2,2>
+// */
+// template<class RT>
+// static Dune::FieldMatrix<RT,2,2> sym (Dune::FieldMatrix<RT,2,2> M) { // 1/2 (M^T + M)
+// Dune::FieldMatrix<RT,2,2> ret(0);
+// for (int i=0; i<2; i++)
+// {
+// ret[i][i] = M[i][i];
+// for (int j=i+1; j<2; j++)
+// {
+// ret[i][j] = 0.5*(M[i][j] + M[j][i]);
+// ret[j][i] = ret[i][j];
+// }
+// }
+// return ret;
+// }
+
+
+
+/**
+ * @brief Taking the symmetric part of a 2x2 matrix and represent it in
+ * (canonical) orthonormal basis of 2x2-symmetric matrices.
+ * Return the 3 coefficients as a vector
+ *
+ * Matrix A -> sym(A) -> coefficients in R_sym^(2x2)
+ *
+ * @param M
+ * @return Coefficient vector
+ */
+template<class RT>
+static Dune::FieldVector<RT,3> matrixToSymCoefficients(Dune::FieldMatrix<RT,2,2> M) {
+ Dune::FieldVector<RT,3> ret = {M[0][0], M[1][1], (1.0/sqrt(2.0))*(M[0][1]+M[1][0])};
+
+ return ret;
+}
+
+/**
+ * @brief same for each slice of a 3x2x2-Tensor.
+ */
+template<class RT, class OutputType>
+static auto tensorToSymCoefficients(Dune::GFE::Tensor3<RT,3,2,2> M, OutputType& ret) {
+ for(int k=0; k<3; k++)
+ {
+ ret[k][0] = M[k][0][0];
+ ret[k][1] = M[k][1][1];
+ ret[k][2] = (1.0/sqrt(2.0))*(M[k][0][1]+M[k][1][0]);
+ }
+ return ret;
+}
+
+
+template<class RT>
+static Dune::FieldMatrix<RT,2,2> CoefficientsToSymMatrix(Dune::FieldVector<RT,3> C)
+{
+ Dune::FieldMatrix<RT,2,2> ret = {{C[0] , C[2]*(1.0/sqrt(2.0))},
+ {C[2]*(1.0/sqrt(2.0)), C[1]}};
+
+ return ret;
+}
+
+/**
+ * @brief This is used to convert FieldMatrices to 'adouble'
+ * since adouble-type can not be read from ParSet.
+ * is there a better way?
+ *
+ * @tparam Rtype
+ * @tparam IMatrixType
+ * @param A
+ * @param B
+ */
+template<class Rtype>
+static void convertFieldMatrix(auto& A,
+ auto& B)
+{
+ for(size_t i=0; i<B.N(); i++)
+ for(size_t j=0; j<B.M(); j++)
+ B[i][j] = (Rtype)A[i][j];
+
+ return;
+}
+
+
+
+#endif
diff --git a/dune/microstructure/deprecated_headers/materialDefinitions.hh b/dune/microstructure/deprecated_headers/materialDefinitions.hh
index 1a03b8832c93a87d13a680217f7c482772f0ed6e..19468d4551cc67f519ecd111c69a20317a74a144 100644
--- a/dune/microstructure/deprecated_headers/materialDefinitions.hh
+++ b/dune/microstructure/deprecated_headers/materialDefinitions.hh
@@ -20,11 +20,11 @@ using VectorRT = FieldVector< double, 3>;
-// (30.8.22) DEPRECATED CLASS!
+// (30.8.22) DEPRECATED CLASS!
- ////----------------------------------------------------------------------------------
+////----------------------------------------------------------------------------------
// template<class Domain>
// int indicatorFunction_material_new(const Domain& x)
// {
@@ -33,7 +33,7 @@ using VectorRT = FieldVector< double, 3>;
// return 1; //#Phase1
// else if (x[1]<(-0.5+theta) and x[2]>(0.5-theta))
// return 2; //#Phase2
-// else
+// else
// return 3; //#Phase3
// }
// MatrixRT material_new(const MatrixRT& G, const int& phase)
@@ -45,7 +45,7 @@ using VectorRT = FieldVector< double, 3>;
// // return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id(); //#Phase1 //Isotrop(mu,lambda)
// else if (phase == 2)
// return 2.0 * mu[1] * sym(G) + lambda[1] * trace(sym(G)) * Id(); //#Phase2
-// else
+// else
// return 2.0 * mu[2] * sym(G) + lambda[2] * trace(sym(G)) * Id(); //#Phase3
// }
// MatrixRT prestrain_material_new(const int& phase)
@@ -60,208 +60,208 @@ using VectorRT = FieldVector< double, 3>;
// {0.0, 1.0, 0.0},
// {0.0, 0.0, 1.0}
// };
-// else
+// else
// return {{0.0, 0.0, 0.0}, //#Phase3
// {0.0, 0.0, 0.0},
// {0.0, 0.0, 0.0}
// };
// }
- ////----------------------------------------------------------------------------------
-
-
-
-
-
- // ----------------------------------------------------------------------------------
- template<class Domain>
- int indicatorFunction_material_neukamm(const Domain& x)
- {
- double theta=0.25;
- if (x[0] <(-0.5+theta) and x[2]<(-0.5+theta))
- return 1; //#Phase1
- else if (x[1]<(-0.5+theta) and x[2]>(0.5-theta))
- return 2; //#Phase2
- else
- return 3; //#Phase3
- }
- MatrixRT material_neukamm(const MatrixRT& G, const int& phase)
- {
- const FieldVector<double,3> mu = {80.0, 80.0, 60.0};
- const FieldVector<double,3> lambda = {80.0, 80.0, 25.0};
- if (phase == 1)
- return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id(); //#Phase1 //Isotrop(mu,lambda)
- else if (phase == 2)
- return 2.0 * mu[1] * sym(G) + lambda[1] * trace(sym(G)) * Id(); //#Phase2
- else
- return 2.0 * mu[2] * sym(G) + lambda[2] * trace(sym(G)) * Id(); //#Phase3
- }
- MatrixRT prestrain_material_neukamm(const int& phase)
- {
- if (phase == 1)
- return {{1.0, 0.0, 0.0}, //#Phase1
- {0.0, 1.0, 0.0},
- {0.0, 0.0, 1.0}
- };
- else if (phase == 2)
- return {{1.0, 0.0, 0.0}, //#Phase2
- {0.0, 1.0, 0.0},
- {0.0, 0.0, 1.0}
- };
- else
- return {{0.0, 0.0, 0.0}, //#Phase3
- {0.0, 0.0, 0.0},
- {0.0, 0.0, 0.0}
- };
- }
- // ----------------------------------------------------------------------------------
-
-
- // ----------------------------------------------------------------------------------
- template<class Domain>
- int indicatorFunction_two_phase_material_1(const Domain& x)
- {
- double theta=0.25;
- if(abs(x[0]) > (theta/2.0))
- return 1; //#Phase1
- else
- return 0; //#Phase2
- }
- MatrixRT two_phase_material_1(const MatrixRT& G, const int& phase)
- {
- const FieldVector<double,2> mu = {80.0, 160.0};
- const FieldVector<double,2> lambda = {80.0, 160.0};
- if (phase == 1)
- return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id();
- else
- return 2.0 * mu[1] * sym(G) + lambda[1] * trace(sym(G)) * Id();
- }
- MatrixRT prestrain_two_phase_material_1(const int& phase)
- {
- const FieldVector<double,2> rho = {3.0, 5.0};
- if (phase == 1)
- return {{rho[0], 0.0, 0.0}, //#Phase1
- {0.0, rho[0], 0.0},
- {0.0, 0.0, rho[0]}
- };
- else
- return {{rho[1], 0.0, 0.0}, //#Phase2
- {0.0, rho[1], 0.0},
- {0.0, 0.0, rho[1]}
- };
- }
- // ----------------------------------------------------------------------------------
-
-
- // ----------------------------------------------------------------------------------
- template<class Domain>
- int indicatorFunction_two_phase_material_2(const Domain& x)
- {
- double theta=0.25;
- if(abs(x[0]) > (theta/2.0))
- return 1; //#Phase1
- else
- return 0; //#Phase2
- }
- MatrixRT two_phase_material_2(const MatrixRT& G, const int& phase)
- {
- const FieldVector<double,2> mu = {5.0, 15.0};
- const FieldVector<double,2> lambda = {6.0, 8.0};
- if (phase == 1)
- return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id();
- else
- return 2.0 * mu[1] * sym(G) + lambda[1] * trace(sym(G)) * Id();
- }
- MatrixRT prestrain_two_phase_material_2(const int& phase)
- {
- const FieldVector<double,2> rho = {3.0, 5.0};
- if (phase == 1)
- return {{rho[0], 0.0, 0.0}, //#Phase1
- {0.0, rho[0], 0.0},
- {0.0, 0.0, rho[0]}
- };
- else
- return {{rho[1], 0.0, 0.0}, //#Phase2
- {0.0, rho[1], 0.0},
- {0.0, 0.0, rho[1]}
- };
- }
- // ----------------------------------------------------------------------------------
-
-
-
- // ----------------------------------------------------------------------------------
- template<class Domain>
- int indicatorFunction_material_2(const Domain& x)
- {
- double theta=0.25;
- if(abs(x[0]) > (theta/2.0))
- return 1; //#Phase1
- else
- return 0; //#Phase2
- }
- MatrixRT material_2(const MatrixRT& G, const int& phase)
- {
- const FieldVector<double,2> mu = {80.0, 160.0};
- const FieldVector<double,2> lambda = {80.0, 160.0};
- if (phase == 1)
- return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id(); //#Phase1
- else
- return 2.0 * mu[1] * sym(G) + lambda[1] * trace(sym(G)) * Id(); //#Phase2
- }
- MatrixRT prestrain_material_2(const int& phase)
- {
- const FieldVector<double,2> rho = {3.0, 5.0};
- if (phase == 1)
- return {{rho[0], 0.0, 0.0}, //#Phase1
- {0.0, rho[0], 0.0},
- {0.0, 0.0, rho[0]}
- };
- else
- return {{rho[1], 0.0, 0.0}, //#Phase2
- {0.0, rho[1], 0.0},
- {0.0, 0.0, rho[1]}
- };
- }
- // ----------------------------------------------------------------------------------
-
-
- // ----------------------------------------------------------------------------------
- template<class Domain>
- int indicatorFunction_material_homogeneous(const Domain& x)
- {
- return 0;
- }
- MatrixRT material_homogeneous(const MatrixRT& G, const int& phase)
- {
- const FieldVector<double,1> mu = {80.0};
- const FieldVector<double,1> lambda = {80.0};
- return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id();
- }
- MatrixRT prestrain_homogeneous(const int& phase)
- {
- if (phase == 1)
- return {{1.0, 0.0, 0.0}, //#Phase1
- {0.0, 1.0, 0.0},
- {0.0, 0.0, 1.0}
- };
- else if (phase == 2)
- return {{1.0, 0.0, 0.0}, //#Phase2
- {0.0, 1.0, 0.0},
- {0.0, 0.0, 1.0}
- };
- else
- return {{1.0, 0.0, 0.0}, //#Phase3
- {0.0, 1.0, 0.0},
- {0.0, 0.0, 1.0}
- };
- }
- // ----------------------------------------------------------------------------------
-
-
-
-
-
-
+////----------------------------------------------------------------------------------
+
+
+
+
+
+// ----------------------------------------------------------------------------------
+template<class Domain>
+int indicatorFunction_material_neukamm(const Domain& x)
+{
+ double theta=0.25;
+ if (x[0] <(-0.5+theta) and x[2]<(-0.5+theta))
+ return 1; //#Phase1
+ else if (x[1]<(-0.5+theta) and x[2]>(0.5-theta))
+ return 2; //#Phase2
+ else
+ return 3; //#Phase3
+}
+MatrixRT material_neukamm(const MatrixRT& G, const int& phase)
+{
+ const FieldVector<double,3> mu = {80.0, 80.0, 60.0};
+ const FieldVector<double,3> lambda = {80.0, 80.0, 25.0};
+ if (phase == 1)
+ return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id(); //#Phase1 //Isotrop(mu,lambda)
+ else if (phase == 2)
+ return 2.0 * mu[1] * sym(G) + lambda[1] * trace(sym(G)) * Id(); //#Phase2
+ else
+ return 2.0 * mu[2] * sym(G) + lambda[2] * trace(sym(G)) * Id(); //#Phase3
+}
+MatrixRT prestrain_material_neukamm(const int& phase)
+{
+ if (phase == 1)
+ return {{1.0, 0.0, 0.0}, //#Phase1
+ {0.0, 1.0, 0.0},
+ {0.0, 0.0, 1.0}
+ };
+ else if (phase == 2)
+ return {{1.0, 0.0, 0.0}, //#Phase2
+ {0.0, 1.0, 0.0},
+ {0.0, 0.0, 1.0}
+ };
+ else
+ return {{0.0, 0.0, 0.0}, //#Phase3
+ {0.0, 0.0, 0.0},
+ {0.0, 0.0, 0.0}
+ };
+}
+// ----------------------------------------------------------------------------------
+
+
+// ----------------------------------------------------------------------------------
+template<class Domain>
+int indicatorFunction_two_phase_material_1(const Domain& x)
+{
+ double theta=0.25;
+ if(abs(x[0]) > (theta/2.0))
+ return 1; //#Phase1
+ else
+ return 0; //#Phase2
+}
+MatrixRT two_phase_material_1(const MatrixRT& G, const int& phase)
+{
+ const FieldVector<double,2> mu = {80.0, 160.0};
+ const FieldVector<double,2> lambda = {80.0, 160.0};
+ if (phase == 1)
+ return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id();
+ else
+ return 2.0 * mu[1] * sym(G) + lambda[1] * trace(sym(G)) * Id();
+}
+MatrixRT prestrain_two_phase_material_1(const int& phase)
+{
+ const FieldVector<double,2> rho = {3.0, 5.0};
+ if (phase == 1)
+ return {{rho[0], 0.0, 0.0}, //#Phase1
+ {0.0, rho[0], 0.0},
+ {0.0, 0.0, rho[0]}
+ };
+ else
+ return {{rho[1], 0.0, 0.0}, //#Phase2
+ {0.0, rho[1], 0.0},
+ {0.0, 0.0, rho[1]}
+ };
+}
+// ----------------------------------------------------------------------------------
+
+
+// ----------------------------------------------------------------------------------
+template<class Domain>
+int indicatorFunction_two_phase_material_2(const Domain& x)
+{
+ double theta=0.25;
+ if(abs(x[0]) > (theta/2.0))
+ return 1; //#Phase1
+ else
+ return 0; //#Phase2
+}
+MatrixRT two_phase_material_2(const MatrixRT& G, const int& phase)
+{
+ const FieldVector<double,2> mu = {5.0, 15.0};
+ const FieldVector<double,2> lambda = {6.0, 8.0};
+ if (phase == 1)
+ return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id();
+ else
+ return 2.0 * mu[1] * sym(G) + lambda[1] * trace(sym(G)) * Id();
+}
+MatrixRT prestrain_two_phase_material_2(const int& phase)
+{
+ const FieldVector<double,2> rho = {3.0, 5.0};
+ if (phase == 1)
+ return {{rho[0], 0.0, 0.0}, //#Phase1
+ {0.0, rho[0], 0.0},
+ {0.0, 0.0, rho[0]}
+ };
+ else
+ return {{rho[1], 0.0, 0.0}, //#Phase2
+ {0.0, rho[1], 0.0},
+ {0.0, 0.0, rho[1]}
+ };
+}
+// ----------------------------------------------------------------------------------
+
+
+
+// ----------------------------------------------------------------------------------
+template<class Domain>
+int indicatorFunction_material_2(const Domain& x)
+{
+ double theta=0.25;
+ if(abs(x[0]) > (theta/2.0))
+ return 1; //#Phase1
+ else
+ return 0; //#Phase2
+}
+MatrixRT material_2(const MatrixRT& G, const int& phase)
+{
+ const FieldVector<double,2> mu = {80.0, 160.0};
+ const FieldVector<double,2> lambda = {80.0, 160.0};
+ if (phase == 1)
+ return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id(); //#Phase1
+ else
+ return 2.0 * mu[1] * sym(G) + lambda[1] * trace(sym(G)) * Id(); //#Phase2
+}
+MatrixRT prestrain_material_2(const int& phase)
+{
+ const FieldVector<double,2> rho = {3.0, 5.0};
+ if (phase == 1)
+ return {{rho[0], 0.0, 0.0}, //#Phase1
+ {0.0, rho[0], 0.0},
+ {0.0, 0.0, rho[0]}
+ };
+ else
+ return {{rho[1], 0.0, 0.0}, //#Phase2
+ {0.0, rho[1], 0.0},
+ {0.0, 0.0, rho[1]}
+ };
+}
+// ----------------------------------------------------------------------------------
+
+
+// ----------------------------------------------------------------------------------
+template<class Domain>
+int indicatorFunction_material_homogeneous(const Domain& x)
+{
+ return 0;
+}
+MatrixRT material_homogeneous(const MatrixRT& G, const int& phase)
+{
+ const FieldVector<double,1> mu = {80.0};
+ const FieldVector<double,1> lambda = {80.0};
+ return 2.0 * mu[0] * sym(G) + lambda[0] * trace(sym(G)) * Id();
+}
+MatrixRT prestrain_homogeneous(const int& phase)
+{
+ if (phase == 1)
+ return {{1.0, 0.0, 0.0}, //#Phase1
+ {0.0, 1.0, 0.0},
+ {0.0, 0.0, 1.0}
+ };
+ else if (phase == 2)
+ return {{1.0, 0.0, 0.0}, //#Phase2
+ {0.0, 1.0, 0.0},
+ {0.0, 0.0, 1.0}
+ };
+ else
+ return {{1.0, 0.0, 0.0}, //#Phase3
+ {0.0, 1.0, 0.0},
+ {0.0, 0.0, 1.0}
+ };
+}
+// ----------------------------------------------------------------------------------
+
+
+
+
+
+
@@ -280,4 +280,4 @@ using VectorRT = FieldVector< double, 3>;
-#endif
\ No newline at end of file
+#endif
diff --git a/dune/microstructure/deprecated_headers/prestrain_material_geometry.hh b/dune/microstructure/deprecated_headers/prestrain_material_geometry.hh
index 55def935a783ea2ae1fb3db94317ac503ae686b8..cae2f3651b3539c26b5c1088d28e6768b2aa88de 100644
--- a/dune/microstructure/deprecated_headers/prestrain_material_geometry.hh
+++ b/dune/microstructure/deprecated_headers/prestrain_material_geometry.hh
@@ -18,460 +18,460 @@ using std::cos;
-template <int dim>
-class IsotropicMaterialImp
+template <int dim>
+class IsotropicMaterialImp
{
public:
static const int dimWorld = dim;
- using CellGridType = YaspGrid< dim, EquidistantOffsetCoordinates< double, dim>>;
+ using CellGridType = YaspGrid< dim, EquidistantOffsetCoordinates< double, dim> >;
using Domain = typename CellGridType::LeafGridView::template Codim<0>::Geometry::GlobalCoordinate;
using MatrixRT = FieldMatrix< double, dimWorld, dimWorld>;
using Func2Tensor = std::function< MatrixRT(const Domain&) >;
- using FuncScalar = std::function< double(const Domain&) >;
+ using FuncScalar = std::function< double (const Domain&) >;
FuncScalar getMu(ParameterTree parameters){
std::string imp = parameters.get<std::string>("material_prestrain_imp", "analytical_Example");
//std::array<std::string,5> imps({"homogen_poisson" "bilayer_poisson" "chess_poisson" "3Dchess_poisson" "vertical_bilayer_poisson"});
-
- double phi = M_PI*parameters.get<double>("material_angle", 0.0)/180; //TODO
+
+ double phi = M_PI*parameters.get<double>("material_angle", 0.0)/180; //TODO
double theta = parameters.get<double>("theta",1.0/4.0); //TODO alle parameter hier laden?
-
+
double width = parameters.get<double>("width", 1.0);
double height = parameters.get<double>("height", 1.0);
- if (imp == "homogeneous"){
+ if (imp == "homogeneous") {
double mu1 = parameters.get<double>("mu1", 10);
auto muTerm = [mu1] (const Domain& z) {return mu1;};
-
+
return muTerm;
}
- else if (imp == "material_neukamm"){
-// std::array<double,2> mu = parameters.get<std::array<double,2>>("mu", {1.0,3.0});
- // std::array<double,3> mu = parameters.get<std::array<double,3>>("mu", {1.0,3.0,2.0});
- std::array<double,3> mu = parameters.get<std::array<double,3>>("mu", {80.0, 80.0, 60.0});
+ else if (imp == "material_neukamm") {
+ // std::array<double,2> mu = parameters.get<std::array<double,2>>("mu", {1.0,3.0});
+ // std::array<double,3> mu = parameters.get<std::array<double,3>>("mu", {1.0,3.0,2.0});
+ std::array<double,3> mu = parameters.get<std::array<double,3> >("mu", {80.0, 80.0, 60.0});
// Python::Module module = Python::import(parameters.get<std::string>("material_neukamm"));
Python::Module module = Python::import("material_neukamm");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
- auto muTerm = [mu,indicatorFunction] (const Domain& z)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(z) == 1)
- return mu[0];
- else if (indicatorFunction(z) == 2)
- return mu[1];
- else
- return mu[2];
- };
+ auto muTerm = [mu,indicatorFunction] (const Domain& z)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(z) == 1)
+ return mu[0];
+ else if (indicatorFunction(z) == 2)
+ return mu[1];
+ else
+ return mu[2];
+ };
return muTerm;
}
- else if (imp == "two_phase_material_1"){
- std::array<double,2> mu = parameters.get<std::array<double,2>>("mu", {1.0,3.0});
+ else if (imp == "two_phase_material_1") {
+ std::array<double,2> mu = parameters.get<std::array<double,2> >("mu", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("two_phase_material_1");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
- auto muTerm = [mu,indicatorFunction] (const Domain& z)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(z) == 1)
- return mu[0];
- else
- return mu[1];
- };
+ auto muTerm = [mu,indicatorFunction] (const Domain& z)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(z) == 1)
+ return mu[0];
+ else
+ return mu[1];
+ };
return muTerm;
}
- else if (imp == "two_phase_material_2"){
- std::array<double,2> mu = parameters.get<std::array<double,2>>("mu", {1.0,3.0});
+ else if (imp == "two_phase_material_2") {
+ std::array<double,2> mu = parameters.get<std::array<double,2> >("mu", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("two_phase_material_2");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
- auto muTerm = [mu,indicatorFunction] (const Domain& z)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(z) == 1)
- return mu[0];
- else
- return mu[1];
- };
+ auto muTerm = [mu,indicatorFunction] (const Domain& z)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(z) == 1)
+ return mu[0];
+ else
+ return mu[1];
+ };
return muTerm;
}
- else if (imp == "two_phase_material_3"){
- std::array<double,2> mu = parameters.get<std::array<double,2>>("mu", {1.0,3.0});
+ else if (imp == "two_phase_material_3") {
+ std::array<double,2> mu = parameters.get<std::array<double,2> >("mu", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("two_phase_material_3");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
- auto muTerm = [mu,indicatorFunction] (const Domain& z)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(z) == 1)
- return mu[0];
- else
- return mu[1];
- };
+ auto muTerm = [mu,indicatorFunction] (const Domain& z)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(z) == 1)
+ return mu[0];
+ else
+ return mu[1];
+ };
return muTerm;
}
else if (imp == "isotropic_bilayer")
- {
- double mu1 = parameters.get<double>("mu1",10.0);
- double beta = parameters.get<double>("beta",2.0);
- double mu2 = beta*mu1;
-
- auto muTerm = [mu1, mu2, theta] (const Domain& z) {
- if (z[2]>0)
- return mu1;
- else
- return mu2;
- };
-
- return muTerm;
- }
- else if (imp == "analytical_Example"){
+ {
+ double mu1 = parameters.get<double>("mu1",10.0);
+ double beta = parameters.get<double>("beta",2.0);
+ double mu2 = beta*mu1;
+
+ auto muTerm = [mu1, mu2, theta] (const Domain& z) {
+ if (z[2]>0)
+ return mu1;
+ else
+ return mu2;
+ };
+
+ return muTerm;
+ }
+ else if (imp == "analytical_Example") {
double mu1 = parameters.get<double>("mu1",10.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
double mu2 = beta*mu1;
-
+
auto muTerm = [mu1, mu2, theta] (const Domain& z) {
- // std::cout << "Analytical-MU is used" << std::endl;
- if (abs(z[0]) >= (theta/2.0))
+ // std::cout << "Analytical-MU is used" << std::endl;
+ if (abs(z[0]) >= (theta/2.0))
return mu1;
- else
+ else
return mu2;
};
-
+
return muTerm;
}
- else if (imp == "parametrized_Laminate"){
+ else if (imp == "parametrized_Laminate") {
double mu1 = parameters.get<double>("mu1",1.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
double mu2 = beta*mu1;
-
+
auto muTerm = [mu1, mu2, theta] (const Domain& z) {
- // std::cout << "Analytical-MU is used" << std::endl;
- // if (abs(z[0]) >= (theta/2.0))
- if (abs(z[0]) > (theta/2.0))
+ // std::cout << "Analytical-MU is used" << std::endl;
+ // if (abs(z[0]) >= (theta/2.0))
+ if (abs(z[0]) > (theta/2.0))
return mu1;
- else
+ else
return mu2;
};
-
+
return muTerm;
}
- else if (imp == "circle_fiber"){
+ else if (imp == "circle_fiber") {
double mu1 = parameters.get<double>("mu1",10.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
double mu2 = beta*mu1;
- auto muTerm = [mu1,mu2,width] (const Domain& z) {
- if (z[0] < 0 && sqrt(pow(z[1],2) + pow(z[2],2) ) < width/4.0 || 0 < z[0] && sqrt(pow(z[1],2) + pow(z[2],2) ) > width/4.0)
- return mu1;
- else
- return mu2;
- };
-
+ auto muTerm = [mu1,mu2,width] (const Domain& z) {
+ if (z[0] < 0 && sqrt(pow(z[1],2) + pow(z[2],2) ) < width/4.0 || 0 < z[0] && sqrt(pow(z[1],2) + pow(z[2],2) ) > width/4.0)
+ return mu1;
+ else
+ return mu2;
+ };
+
return muTerm;
}
- else if (imp == "square_fiber"){
+ else if (imp == "square_fiber") {
double mu1 = parameters.get<double>("mu1",10.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
double mu2 = beta*mu1;
- auto muTerm = [mu1,mu2,width] (const Domain& z) {
- if (z[0] < 0 && std::max(abs(z[1]), abs(z[2])) < width/4.0 || 0 < z[0] && std::max(abs(z[1]), abs(z[2])) > width/4.0)
- return mu1;
- else
- return mu2;
- };
-
+ auto muTerm = [mu1,mu2,width] (const Domain& z) {
+ if (z[0] < 0 && std::max(abs(z[1]), abs(z[2])) < width/4.0 || 0 < z[0] && std::max(abs(z[1]), abs(z[2])) > width/4.0)
+ return mu1;
+ else
+ return mu2;
+ };
+
return muTerm;
}
else if (imp == "matrix_material_circles") // Matrix material with prestrained Fiber inclusions (circular cross-section)
- {
- double mu1 = parameters.get<double>("mu1",10.0);
- double beta = parameters.get<double>("beta",2.0);
- double mu2 = beta*mu1;
-
- int nF = parameters.get<int>("nF", 2); //number of Fibers in each Layer
- double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
-
-
-
- assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
-
- auto muTerm = [mu1,mu2,theta,nF,rF,height,width] (const Domain& x)
- {
- //TODO if Domain == 1... if Domain == 2 ...
- // double domainShift = 1.0/2.0;
- // TEST
- double domainShift = 0.0;
- // shift x to domain [0,1]^3
- FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
- // std::cout << "matrixMaterial-MU is used" << std::endl;
-
- double output;
-
- // determine if point is in upper/lower Layer
- if ( 0 <= s[2] && s[2] <= 1.0/2.0) // upper Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1)) // have to evenly space fibers...
- {
- // std::cout << " i : " << i << std::endl;
- // printvector(std::cout, s, "s" , "--");
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
- // printvector(std::cout, Fcenter, "Fcenter" , "--");
- //
- if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
- output = mu2;
- // return mu2; //richtig so? Fiber hat tendenziell größeres mu?
- else
- output = mu1;
- // return mu1;
- }
- else {}
- }
- }
- else // lower Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/double(nF))*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1))
- {
- // std::cout << " i : " << i << std::endl;
- // printvector(std::cout, s, "s" , "--");
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0 };
- // printvector(std::cout, Fcenter, "Fcenter" , "--");
-
- if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
- output = mu2;
- // return mu2; //richtig so? Fiber hat tendenziell größeres mu?
- else
- output = mu1;
- // return mu1;
- }
- else{}
- }
-
- }
- return output;
- };
- return muTerm;
- }
+ {
+ double mu1 = parameters.get<double>("mu1",10.0);
+ double beta = parameters.get<double>("beta",2.0);
+ double mu2 = beta*mu1;
+
+ int nF = parameters.get<int>("nF", 2); //number of Fibers in each Layer
+ double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
+
+
+
+ assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
+
+ auto muTerm = [mu1,mu2,theta,nF,rF,height,width] (const Domain& x)
+ {
+ //TODO if Domain == 1... if Domain == 2 ...
+ // double domainShift = 1.0/2.0;
+ // TEST
+ double domainShift = 0.0;
+ // shift x to domain [0,1]^3
+ FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
+ // std::cout << "matrixMaterial-MU is used" << std::endl;
+
+ double output;
+
+ // determine if point is in upper/lower Layer
+ if ( 0 <= s[2] && s[2] <= 1.0/2.0) // upper Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1)) // have to evenly space fibers...
+ {
+ // std::cout << " i : " << i << std::endl;
+ // printvector(std::cout, s, "s" , "--");
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
+ // printvector(std::cout, Fcenter, "Fcenter" , "--");
+ //
+ if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
+ output = mu2;
+ // return mu2; //richtig so? Fiber hat tendenziell größeres mu?
+ else
+ output = mu1;
+ // return mu1;
+ }
+ else {}
+ }
+ }
+ else // lower Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/double(nF))*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1))
+ {
+ // std::cout << " i : " << i << std::endl;
+ // printvector(std::cout, s, "s" , "--");
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0 };
+ // printvector(std::cout, Fcenter, "Fcenter" , "--");
+
+ if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
+ output = mu2;
+ // return mu2; //richtig so? Fiber hat tendenziell größeres mu?
+ else
+ output = mu1;
+ // return mu1;
+ }
+ else{}
+ }
+
+ }
+ return output;
+ };
+ return muTerm;
+ }
else if (imp == "matrix_material_squares") // Matrix material with prestrained Fiber inclusions (square-shaped cross-section)
- {
- double mu1 = parameters.get<double>("mu1",10.0);
- double beta = parameters.get<double>("beta",2.0);
- double mu2 = beta*mu1;
-
- int nF = parameters.get<int>("nF", 2); //number of Fibers in each Layer
- double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
-
-
-
- assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
-
- auto muTerm = [mu1,mu2,theta,nF,rF,height,width] (const Domain& x)
- {
- //TODO if Domain == 1... if Domain == 2 ...
- // double domainShift = 1.0/2.0;
- // TEST
- double domainShift = 0.0;
- // shift x to domain [0,1]^3
- FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
- // std::cout << "matrixMaterial-MU is used" << std::endl;
- double output;
-
- // determine if point is in upper/lower Layer
- if ( 0 <= s[2] && s[2] <= 1.0/2.0) // upper Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1)) // have to evenly space fibers...
- {
- // std::cout << " i : " << i << std::endl;
- // printvector(std::cout, s, "s" , "--");
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
- // printvector(std::cout, Fcenter, "Fcenter" , "--");
- //
- if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
- output = mu2;
- // return mu2; //richtig so? Fiber hat tendenziell größeres mu?
- else
- output = mu1;
- // return mu1;
- }
- }
- }
- else // lower Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/double(nF))*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1))
- {
- // std::cout << " i : " << i << std::endl;
- // printvector(std::cout, s, "s" , "--");
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0 };
- // printvector(std::cout, Fcenter, "Fcenter" , "--");
-
- if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
- output = mu2;
- // return mu2; //richtig so? Fiber hat tendenziell größeres mu?
- else
- output = mu1;
- // return mu1;
- }
- }
- }
- return output;
- };
- return muTerm;
- }
- else if (imp == "bilayer"){
+ {
double mu1 = parameters.get<double>("mu1",10.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
+ double mu2 = beta*mu1;
+
+ int nF = parameters.get<int>("nF", 2); //number of Fibers in each Layer
+ double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
+
+
+
+ assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
+
+ auto muTerm = [mu1,mu2,theta,nF,rF,height,width] (const Domain& x)
+ {
+ //TODO if Domain == 1... if Domain == 2 ...
+ // double domainShift = 1.0/2.0;
+ // TEST
+ double domainShift = 0.0;
+ // shift x to domain [0,1]^3
+ FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
+ // std::cout << "matrixMaterial-MU is used" << std::endl;
+ double output;
+
+ // determine if point is in upper/lower Layer
+ if ( 0 <= s[2] && s[2] <= 1.0/2.0) // upper Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1)) // have to evenly space fibers...
+ {
+ // std::cout << " i : " << i << std::endl;
+ // printvector(std::cout, s, "s" , "--");
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
+ // printvector(std::cout, Fcenter, "Fcenter" , "--");
+ //
+ if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
+ output = mu2;
+ // return mu2; //richtig so? Fiber hat tendenziell größeres mu?
+ else
+ output = mu1;
+ // return mu1;
+ }
+ }
+ }
+ else // lower Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/double(nF))*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1))
+ {
+ // std::cout << " i : " << i << std::endl;
+ // printvector(std::cout, s, "s" , "--");
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0 };
+ // printvector(std::cout, Fcenter, "Fcenter" , "--");
+
+ if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
+ output = mu2;
+ // return mu2; //richtig so? Fiber hat tendenziell größeres mu?
+ else
+ output = mu1;
+ // return mu1;
+ }
+ }
+ }
+ return output;
+ };
+ return muTerm;
+ }
+ else if (imp == "bilayer") {
+ double mu1 = parameters.get<double>("mu1",10.0);
+ double beta = parameters.get<double>("beta",2.0);
double mu2 = beta*mu1;
-
+
auto muTerm = [mu1, mu2, phi] (const Domain& z) {
- if (isInRotatedPlane(phi, z[dim-2], z[dim-1]))
- return mu1;
- else
- return mu2;
- };
-
+ if (isInRotatedPlane(phi, z[dim-2], z[dim-1]))
+ return mu1;
+ else
+ return mu2;
+ };
+
return muTerm;
}
-
- else if (imp == "helix_poisson"){ // interessant!
+
+ else if (imp == "helix_poisson") { // interessant!
double mu1 = parameters.get<double>("mu1",10.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
double mu2 = beta*mu1;
double r = parameters.get<double>("radius");
double r2 = parameters.get<double>("radius_helix");
auto muTerm = [mu1, mu2, r, r2] (const Domain& z) {
- std::array<double,2> h = {r*cos(2*M_PI*z[0]), r*sin(2*M_PI*z[0])};
- if ( sqrt(pow(z[1]-h[0],2)+pow(z[2]-h[1],2)) < r2 ) // distance to the helix?
- return mu1;
- else
- return mu2;
- };
-
+ std::array<double,2> h = {r*cos(2*M_PI*z[0]), r*sin(2*M_PI*z[0])};
+ if ( sqrt(pow(z[1]-h[0],2)+pow(z[2]-h[1],2)) < r2 ) // distance to the helix?
+ return mu1;
+ else
+ return mu2;
+ };
+
return muTerm;
}
- else if (imp == "chess_poisson"){
+ else if (imp == "chess_poisson") {
double mu1 = parameters.get<double>("mu1",10.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
double mu2 = beta*mu1;
auto muTerm = [mu1, mu2, phi] (const Domain& z) {
- if ( (isInRotatedPlane(phi, z[dim-2], z[dim-1]) and isInRotatedPlane(phi + M_PI/2 , z[dim-2], z[dim-1])) or
- (isInRotatedPlane(phi + M_PI, z[dim-2], z[dim-1]) and isInRotatedPlane(phi + 3*M_PI/2, z[dim-2], z[dim-1])) )
- return mu1;
- else
- return mu2;
- };
-
+ if ( (isInRotatedPlane(phi, z[dim-2], z[dim-1]) and isInRotatedPlane(phi + M_PI/2 , z[dim-2], z[dim-1])) or
+ (isInRotatedPlane(phi + M_PI, z[dim-2], z[dim-1]) and isInRotatedPlane(phi + 3*M_PI/2, z[dim-2], z[dim-1])) )
+ return mu1;
+ else
+ return mu2;
+ };
+
return muTerm;
}
- // else if (imp == "3Dchess_poisson"){
- // double E1 = parameters.get<double>("E1", 17e6); //Faser
- // double nu1 = parameters.get<double>("nu1", 0.3);
- // double mu1 = lameMu(E1, nu1);
- //
- // double E2 = parameters.get<double>("E2", 17e6); //Polymer, weicher, Querkontraktion groß
- // double nu2 = parameters.get<double>("nu2", 0.5);
- // double mu2 = lameMu(E2, nu2);
- //
- // auto muTerm = [mu1, mu2, phi] (const Domain& z) {
- // if (z[0]<0.5)
- // if ( (isInRotatedPlane(phi, z[1], z[2]) and isInRotatedPlane(phi + M_PI/2 , z[1], z[2])) or
- // (isInRotatedPlane(phi + M_PI, z[1], z[2]) and isInRotatedPlane(phi + 3*M_PI/2, z[1], z[2])) )
- // return mu1;
- // else
- // return mu2;
- // else
- // if ( (isInRotatedPlane(phi, z[1], z[2]) and isInRotatedPlane(phi + M_PI/2 , z[1], z[2])) or
- // (isInRotatedPlane(phi + M_PI, z[1], z[2]) and isInRotatedPlane(phi + 3*M_PI/2, z[1], z[2])) )
- // return mu2;
- // else
- // return mu1;
- // };
- //
- // return muTerm;
- // }
- // else if (imp == "vertical_bilayer_poisson"){
- // double E1 = parameters.get<double>("E1", 17e6); //material1
- // double nu1 = parameters.get<double>("nu1", 0.3);
- // double mu1 = lameMu(E1, nu1);
- // double E2 = parameters.get<double>("E2", 17e6); //material2
- // double nu2 = parameters.get<double>("nu2", 0.5);
- // double mu2 = lameMu(E2, nu2);
- //
- // auto muTerm = [mu1, mu2, phi] (const Domain& z) {
- // if ( isInRotatedPlane(phi+M_PI/2.0, z[dim-2], z[dim-1]) )//x3
- // return mu1;
- // else
- // return mu2; };
- //
- // return muTerm;
- // }
- //
- // else if (imp == "microstructured_bilayer_poisson"){
- // double E1 = parameters.get<double>("E1", 17e6); //material1
- // double nu1 = parameters.get<double>("nu1", 0.3);
- // double mu1 = lameMu(E1, nu1);
- // double E2 = parameters.get<double>("E2", 17e6); //material2
- // double nu2 = parameters.get<double>("nu2", 0.5);
- // double mu2 = lameMu(E2, nu2);
- //
- // auto muTerm = [mu1, mu2, phi] (const Domain& z) {
- // if ( isInRotatedPlane(phi, z[0]-0.5, z[1]) ) //TODO understand this
- // return mu1;
- // else
- // return mu2; };
- //
- // return muTerm;
- // }
- //
- // else { //(imp == "bilayer_poisson")
- // double E1 = parameters.get<double>("E1", 17e6); //material1
- // double nu1 = parameters.get<double>("nu1", 0.3);
- // double mu1 = lameMu(E1, nu1);
- // double E2 = parameters.get<double>("E2", 17e6); //material2
- // double nu2 = parameters.get<double>("nu2", 0.5);
- // double mu2 = lameMu(E2, nu2);
- //
- // auto muTerm = [mu1, mu2, phi] (const Domain& z) {
- // if ( isInRotatedPlane(phi, z[dim-2], z[dim-1]) ) //x2
- // return mu1;
- // else
- // return mu2; };
- //
- // return muTerm;
- // }
+ // else if (imp == "3Dchess_poisson"){
+ // double E1 = parameters.get<double>("E1", 17e6); //Faser
+ // double nu1 = parameters.get<double>("nu1", 0.3);
+ // double mu1 = lameMu(E1, nu1);
+ //
+ // double E2 = parameters.get<double>("E2", 17e6); //Polymer, weicher, Querkontraktion groß
+ // double nu2 = parameters.get<double>("nu2", 0.5);
+ // double mu2 = lameMu(E2, nu2);
+ //
+ // auto muTerm = [mu1, mu2, phi] (const Domain& z) {
+ // if (z[0]<0.5)
+ // if ( (isInRotatedPlane(phi, z[1], z[2]) and isInRotatedPlane(phi + M_PI/2 , z[1], z[2])) or
+ // (isInRotatedPlane(phi + M_PI, z[1], z[2]) and isInRotatedPlane(phi + 3*M_PI/2, z[1], z[2])) )
+ // return mu1;
+ // else
+ // return mu2;
+ // else
+ // if ( (isInRotatedPlane(phi, z[1], z[2]) and isInRotatedPlane(phi + M_PI/2 , z[1], z[2])) or
+ // (isInRotatedPlane(phi + M_PI, z[1], z[2]) and isInRotatedPlane(phi + 3*M_PI/2, z[1], z[2])) )
+ // return mu2;
+ // else
+ // return mu1;
+ // };
+ //
+ // return muTerm;
+ // }
+ // else if (imp == "vertical_bilayer_poisson"){
+ // double E1 = parameters.get<double>("E1", 17e6); //material1
+ // double nu1 = parameters.get<double>("nu1", 0.3);
+ // double mu1 = lameMu(E1, nu1);
+ // double E2 = parameters.get<double>("E2", 17e6); //material2
+ // double nu2 = parameters.get<double>("nu2", 0.5);
+ // double mu2 = lameMu(E2, nu2);
+ //
+ // auto muTerm = [mu1, mu2, phi] (const Domain& z) {
+ // if ( isInRotatedPlane(phi+M_PI/2.0, z[dim-2], z[dim-1]) )//x3
+ // return mu1;
+ // else
+ // return mu2; };
+ //
+ // return muTerm;
+ // }
+ //
+ // else if (imp == "microstructured_bilayer_poisson"){
+ // double E1 = parameters.get<double>("E1", 17e6); //material1
+ // double nu1 = parameters.get<double>("nu1", 0.3);
+ // double mu1 = lameMu(E1, nu1);
+ // double E2 = parameters.get<double>("E2", 17e6); //material2
+ // double nu2 = parameters.get<double>("nu2", 0.5);
+ // double mu2 = lameMu(E2, nu2);
+ //
+ // auto muTerm = [mu1, mu2, phi] (const Domain& z) {
+ // if ( isInRotatedPlane(phi, z[0]-0.5, z[1]) ) //TODO understand this
+ // return mu1;
+ // else
+ // return mu2; };
+ //
+ // return muTerm;
+ // }
+ //
+ // else { //(imp == "bilayer_poisson")
+ // double E1 = parameters.get<double>("E1", 17e6); //material1
+ // double nu1 = parameters.get<double>("nu1", 0.3);
+ // double mu1 = lameMu(E1, nu1);
+ // double E2 = parameters.get<double>("E2", 17e6); //material2
+ // double nu2 = parameters.get<double>("nu2", 0.5);
+ // double mu2 = lameMu(E2, nu2);
+ //
+ // auto muTerm = [mu1, mu2, phi] (const Domain& z) {
+ // if ( isInRotatedPlane(phi, z[dim-2], z[dim-1]) ) //x2
+ // return mu1;
+ // else
+ // return mu2; };
+ //
+ // return muTerm;
+ // }
}
FuncScalar getLambda(ParameterTree parameters)
@@ -483,441 +483,442 @@ public:
//std::string imp = imps[i_imp];
double phi = M_PI*parameters.get<double>("material_angle", 0.0)/180;
double theta = parameters.get<double>("theta",1.0/4.0); //TODO alle parameter hier laden?
-
+
double width = parameters.get<double>("width", 1.0);
double height = parameters.get<double>("height", 1.0);
- if (imp == "homogeneous"){
+ if (imp == "homogeneous") {
double lambda1 = parameters.get<double>("lambda1",0.0);
auto lambdaTerm = [lambda1] (const Domain& z) {return lambda1;};
-
+
return lambdaTerm;
}
- if (imp == "material_neukamm"){
-// std::array<double,2> lambda = parameters.get<std::array<double,2>>("lambda", {1.0,3.0});
- // std::array<double,3> lambda = parameters.get<std::array<double,3>>("lambda", {1.0,3.0,2.0});
- std::array<double,3> lambda = parameters.get<std::array<double,3>>("lambda", {80.0, 80.0, 25.0});
-
+ if (imp == "material_neukamm") {
+ // std::array<double,2> lambda = parameters.get<std::array<double,2>>("lambda", {1.0,3.0});
+ // std::array<double,3> lambda = parameters.get<std::array<double,3>>("lambda", {1.0,3.0,2.0});
+ std::array<double,3> lambda = parameters.get<std::array<double,3> >("lambda", {80.0, 80.0, 25.0});
+
Python::Module module = Python::import("material_neukamm");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
- auto lambdaTerm = [lambda,indicatorFunction] (const Domain& z)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(z) == 1)
- return lambda[0];
- else if (indicatorFunction(z) == 2)
- return lambda[1];
- else
- return lambda[2];
- };
+ auto lambdaTerm = [lambda,indicatorFunction] (const Domain& z)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(z) == 1)
+ return lambda[0];
+ else if (indicatorFunction(z) == 2)
+ return lambda[1];
+ else
+ return lambda[2];
+ };
return lambdaTerm;
}
- if (imp == "two_phase_material_1"){
- std::array<double,2> lambda = parameters.get<std::array<double,2>>("lambda", {1.0,3.0});
+ if (imp == "two_phase_material_1") {
+ std::array<double,2> lambda = parameters.get<std::array<double,2> >("lambda", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("two_phase_material_1");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
- auto lambdaTerm = [lambda,indicatorFunction] (const Domain& z)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(z) == 1)
- return lambda[0];
- else
- return lambda[1];
- };
+ auto lambdaTerm = [lambda,indicatorFunction] (const Domain& z)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(z) == 1)
+ return lambda[0];
+ else
+ return lambda[1];
+ };
return lambdaTerm;
}
- if (imp == "two_phase_material_2"){
- std::array<double,2> lambda = parameters.get<std::array<double,2>>("lambda", {1.0,3.0});
+ if (imp == "two_phase_material_2") {
+ std::array<double,2> lambda = parameters.get<std::array<double,2> >("lambda", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("two_phase_material_2");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
- auto lambdaTerm = [lambda,indicatorFunction] (const Domain& z)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(z) == 1)
- return lambda[0];
- else
- return lambda[1];
- };
+ auto lambdaTerm = [lambda,indicatorFunction] (const Domain& z)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(z) == 1)
+ return lambda[0];
+ else
+ return lambda[1];
+ };
return lambdaTerm;
}
- if (imp == "two_phase_material_3"){
- std::array<double,2> lambda = parameters.get<std::array<double,2>>("lambda", {1.0,3.0});
+ if (imp == "two_phase_material_3") {
+ std::array<double,2> lambda = parameters.get<std::array<double,2> >("lambda", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("two_phase_material_3");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
- auto lambdaTerm = [lambda,indicatorFunction] (const Domain& z)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(z) == 1)
- return lambda[0];
- else
- return lambda[1];
- };
+ auto lambdaTerm = [lambda,indicatorFunction] (const Domain& z)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(z) == 1)
+ return lambda[0];
+ else
+ return lambda[1];
+ };
return lambdaTerm;
}
else if (imp == "isotropic_bilayer")
- {
- double lambda1 = parameters.get<double>("lambda1",0.0);
- double beta = parameters.get<double>("beta",2.0);
- double lambda2 = beta*lambda1;
-
- auto lambdaTerm = [lambda1,lambda2, theta] (const Domain& z) {
- if (z[2]>0)
- return lambda1;
- else
- return lambda2;
- };
- return lambdaTerm;
- }
-
- else if (imp == "analytical_Example"){
+ {
double lambda1 = parameters.get<double>("lambda1",0.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
double lambda2 = beta*lambda1;
-
+
auto lambdaTerm = [lambda1,lambda2, theta] (const Domain& z) {
-
- // std::cout << "Analytical-LAMBDA is used" << std::endl; //TEST
- if (abs(z[0]) >= (theta/2.0))
- return lambda1;
- else
- return lambda2;
- };
+ if (z[2]>0)
+ return lambda1;
+ else
+ return lambda2;
+ };
return lambdaTerm;
}
- else if (imp == "parametrized_Laminate"){
+
+ else if (imp == "analytical_Example") {
double lambda1 = parameters.get<double>("lambda1",0.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
double lambda2 = beta*lambda1;
-
+
auto lambdaTerm = [lambda1,lambda2, theta] (const Domain& z) {
-
- // std::cout << "Analytical-LAMBDA is used" << std::endl; //TEST
- // std::cout << "Lambda1:" << lambda1 << std::endl;
- // if (abs(z[0]) > (theta/2.0))
- if (abs(z[0]) > (theta/2.0))
- return lambda1;
- else
- return lambda2;
- };
+
+ // std::cout << "Analytical-LAMBDA is used" << std::endl; //TEST
+ if (abs(z[0]) >= (theta/2.0))
+ return lambda1;
+ else
+ return lambda2;
+ };
return lambdaTerm;
}
- else if (imp == "circle_fiber"){
+ else if (imp == "parametrized_Laminate") {
double lambda1 = parameters.get<double>("lambda1",0.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
+ double lambda2 = beta*lambda1;
+
+ auto lambdaTerm = [lambda1,lambda2, theta] (const Domain& z) {
+
+ // std::cout << "Analytical-LAMBDA is used" << std::endl; //TEST
+ // std::cout << "Lambda1:" << lambda1 << std::endl;
+ // if (abs(z[0]) > (theta/2.0))
+ if (abs(z[0]) > (theta/2.0))
+ return lambda1;
+ else
+ return lambda2;
+ };
+ return lambdaTerm;
+ }
+ else if (imp == "circle_fiber") {
+ double lambda1 = parameters.get<double>("lambda1",0.0);
+ double beta = parameters.get<double>("beta",2.0);
double lambda2 = beta*lambda1;
auto lambdaTerm = [lambda1,lambda2,width] (const Domain& z) // Prestrain inducing twist (bisher nur extension)
- {
- if (z[0] < 0 && sqrt(pow(z[1],2) + pow(z[2],2) ) < width/4.0 || 0 < z[0] && sqrt(pow(z[1],2) + pow(z[2],2) ) > width/4.0)
- return lambda1;
- else
- return lambda2;
- };
-
+ {
+ if (z[0] < 0 && sqrt(pow(z[1],2) + pow(z[2],2) ) < width/4.0 || 0 < z[0] && sqrt(pow(z[1],2) + pow(z[2],2) ) > width/4.0)
+ return lambda1;
+ else
+ return lambda2;
+ };
+
return lambdaTerm;
}
- else if (imp == "square_fiber"){
+ else if (imp == "square_fiber") {
double lambda1 = parameters.get<double>("lambda1",0.0);
- double beta = parameters.get<double>("beta",2.0);
+ double beta = parameters.get<double>("beta",2.0);
double lambda2 = beta*lambda1;
auto lambdaTerm = [lambda1,lambda2,width] (const Domain& z) // Prestrain inducing twist (bisher nur extension)
- {
- if (z[0] < 0 && std::max(abs(z[1]), abs(z[2])) < width/4.0 || 0 < z[0] && std::max(abs(z[1]), abs(z[2])) > width/4.0)
- return lambda1;
- else
- return lambda2;
- };
-
+ {
+ if (z[0] < 0 && std::max(abs(z[1]), abs(z[2])) < width/4.0 || 0 < z[0] && std::max(abs(z[1]), abs(z[2])) > width/4.0)
+ return lambda1;
+ else
+ return lambda2;
+ };
+
return lambdaTerm;
}
else if (imp == "matrix_material_circles") // Matrix material with prestrained Fiber inclusions (circular cross-section)
- {
- double lambda1 = parameters.get<double>("lambda1",0.0);
- double beta = parameters.get<double>("beta",2.0);
- double lambda2 = beta*lambda1;
-
- int nF = parameters.get<int>("nF", 2); //number of Fibers in each Layer
- double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
-
-
-
- assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
-
- auto lambdaTerm = [lambda1,lambda2, theta,nF,rF,height,width] (const Domain& x)
- {
- //TODO if Domain == 1... if Domain == 2 ...
- // double domainShift = 1.0/2.0;
- // TEST
- double domainShift = 0.0;
- // shift x to domain [0,1]^3
- FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
- // std::cout << "matrixMaterial-MU is used" << std::endl;
- double output;
-
- // determine if point is in upper/lower Layer
- if ( 0 <= s[2] && s[2] <= 1.0/2.0) // upper Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1)) // have to evenly space fibers...
- {
- // std::cout << " i : " << i << std::endl;
- // printvector(std::cout, s, "s" , "--");
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
- // printvector(std::cout, Fcenter, "Fcenter" , "--");
- //
- if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
- output = lambda2;
- // return lambda2; //richtig so? Fiber hat tendenziell größeres mu?
- else
- output = lambda1;
- // return lambda1;
- }
- }
- }
- else // lower Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/double(nF))*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1))
- {
- // std::cout << " i : " << i << std::endl;
- // printvector(std::cout, s, "s" , "--");
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0 };
- // printvector(std::cout, Fcenter, "Fcenter" , "--");
-
- if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
- output = lambda2;
- // return lambda2; //richtig so? Fiber hat tendenziell größeres mu?
- else
- output = lambda1;
- // return lambda1;
- }
- }
-
- }
- return output;
- };
- return lambdaTerm;
- }
+ {
+ double lambda1 = parameters.get<double>("lambda1",0.0);
+ double beta = parameters.get<double>("beta",2.0);
+ double lambda2 = beta*lambda1;
+
+ int nF = parameters.get<int>("nF", 2); //number of Fibers in each Layer
+ double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
+
+
+
+ assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
+
+ auto lambdaTerm = [lambda1,lambda2, theta,nF,rF,height,width] (const Domain& x)
+ {
+ //TODO if Domain == 1... if Domain == 2 ...
+ // double domainShift = 1.0/2.0;
+ // TEST
+ double domainShift = 0.0;
+ // shift x to domain [0,1]^3
+ FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
+ // std::cout << "matrixMaterial-MU is used" << std::endl;
+ double output;
+
+ // determine if point is in upper/lower Layer
+ if ( 0 <= s[2] && s[2] <= 1.0/2.0) // upper Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1)) // have to evenly space fibers...
+ {
+ // std::cout << " i : " << i << std::endl;
+ // printvector(std::cout, s, "s" , "--");
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
+ // printvector(std::cout, Fcenter, "Fcenter" , "--");
+ //
+ if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
+ output = lambda2;
+ // return lambda2; //richtig so? Fiber hat tendenziell größeres mu?
+ else
+ output = lambda1;
+ // return lambda1;
+ }
+ }
+ }
+ else // lower Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/double(nF))*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1))
+ {
+ // std::cout << " i : " << i << std::endl;
+ // printvector(std::cout, s, "s" , "--");
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0 };
+ // printvector(std::cout, Fcenter, "Fcenter" , "--");
+
+ if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
+ output = lambda2;
+ // return lambda2; //richtig so? Fiber hat tendenziell größeres mu?
+ else
+ output = lambda1;
+ // return lambda1;
+ }
+ }
+
+ }
+ return output;
+ };
+ return lambdaTerm;
+ }
else if (imp == "matrix_material_squares") // Matrix material with prestrained Fiber inclusions (square-shaped cross-section)
- {
- double lambda1 = parameters.get<double>("lambda1",0.0);
- double beta = parameters.get<double>("beta",2.0);
- double lambda2 = beta*lambda1;
-
- int nF = parameters.get<int>("nF", 2); //number of Fibers in each Layer
- double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
-
- assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
-
- auto lambdaTerm = [lambda1,lambda2, theta,nF,rF,height,width] (const Domain& x)
- {
- //TODO if Domain == 1... if Domain == 2 ...
- // double domainShift = 1.0/2.0;
- // TEST
- double domainShift = 0.0;
- // shift x to domain [0,1]^3
- FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
- // std::cout << "matrixMaterial-MU is used" << std::endl;
- double output;
-
- // determine if point is in upper/lower Layer
- if ( 0 <= s[2] && s[2] <= 1.0/2.0) // upper Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1)) // have to evenly space fibers...
- {
- // std::cout << " i : " << i << std::endl;
- // printvector(std::cout, s, "s" , "--");
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
- // printvector(std::cout, Fcenter, "Fcenter" , "--");
- //
- if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
- output = lambda2;
- // return lambda2; //richtig so? Fiber hat tendenziell größeres mu?
- else
- output = lambda1;
- // return lambda1;
- }
- }
- }
- else // lower Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/double(nF))*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1))
- {
- // std::cout << " i : " << i << std::endl;
- // printvector(std::cout, s, "s" , "--");
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0 };
- // printvector(std::cout, Fcenter, "Fcenter" , "--");
-
- if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
- output = lambda2;
- // return lambda2; //richtig so? Fiber hat tendenziell größeres mu?
- else
- output = lambda1;
- // return lambda1;
- }
- }
- }
- return output;
- };
- return lambdaTerm;
- }
- else if (imp == "bilayer_lame"){
+ {
+ double lambda1 = parameters.get<double>("lambda1",0.0);
+ double beta = parameters.get<double>("beta",2.0);
+ double lambda2 = beta*lambda1;
+
+ int nF = parameters.get<int>("nF", 2); //number of Fibers in each Layer
+ double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
+
+ assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
+
+ auto lambdaTerm = [lambda1,lambda2, theta,nF,rF,height,width] (const Domain& x)
+ {
+ //TODO if Domain == 1... if Domain == 2 ...
+ // double domainShift = 1.0/2.0;
+ // TEST
+ double domainShift = 0.0;
+ // shift x to domain [0,1]^3
+ FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
+ // std::cout << "matrixMaterial-MU is used" << std::endl;
+ double output;
+
+ // determine if point is in upper/lower Layer
+ if ( 0 <= s[2] && s[2] <= 1.0/2.0) // upper Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1)) // have to evenly space fibers...
+ {
+ // std::cout << " i : " << i << std::endl;
+ // printvector(std::cout, s, "s" , "--");
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
+ // printvector(std::cout, Fcenter, "Fcenter" , "--");
+ //
+ if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
+ output = lambda2;
+ // return lambda2; //richtig so? Fiber hat tendenziell größeres mu?
+ else
+ output = lambda1;
+ // return lambda1;
+ }
+ }
+ }
+ else // lower Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/double(nF))*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/double(nF))*(i+1))
+ {
+ // std::cout << " i : " << i << std::endl;
+ // printvector(std::cout, s, "s" , "--");
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0 };
+ // printvector(std::cout, Fcenter, "Fcenter" , "--");
+
+ if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
+ output = lambda2;
+ // return lambda2; //richtig so? Fiber hat tendenziell größeres mu?
+ else
+ output = lambda1;
+ // return lambda1;
+ }
+ }
+ }
+ return output;
+ };
+ return lambdaTerm;
+ }
+ else if (imp == "bilayer_lame") {
double lambda1 = parameters.get<double>("mu1",384.615);
- double lambda2 = parameters.get<double>("mu2",384.615);
-
+ double lambda2 = parameters.get<double>("mu2",384.615);
+
auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
- if ( isInRotatedPlane(phi, z[dim-2], z[dim-1]) )
- return lambda1;
- else
- return lambda2; };
-
+ if ( isInRotatedPlane(phi, z[dim-2], z[dim-1]) )
+ return lambda1;
+ else
+ return lambda2;
+ };
+
return lambdaTerm;
}
- else if (imp == "helix_poisson"){
+ else if (imp == "helix_poisson") {
double E1 = parameters.get<double>("E1", 17e6); //Faser
double nu1 = parameters.get<double>("nu1", 0.3);
double lambda1 = lameLambda(E1,nu1);
double E2 = parameters.get<double>("E2", 17e6); //Polymer, weicher, Querkontraktion groß
- double nu2 = parameters.get<double>("nu2", 0.5);
+ double nu2 = parameters.get<double>("nu2", 0.5);
double lambda2 = lameLambda(E2, nu2);
double r = parameters.get<double>("radius");
double r2 = parameters.get<double>("radius_helix");
auto lambdaTerm = [lambda1, lambda2, r, r2] (const Domain& z) {
- std::array<double,2> h = {r*cos(2*M_PI*z[0]), r*sin(2*M_PI*z[0])};
- MatrixRT ret(0.0);
- if ( sqrt(pow(z[1]-h[0],2)+pow(z[2]-h[1],2)) < r2 )
- return lambda1;
- else
- return lambda2;
- };
-
+ std::array<double,2> h = {r*cos(2*M_PI*z[0]), r*sin(2*M_PI*z[0])};
+ MatrixRT ret(0.0);
+ if ( sqrt(pow(z[1]-h[0],2)+pow(z[2]-h[1],2)) < r2 )
+ return lambda1;
+ else
+ return lambda2;
+ };
+
return lambdaTerm;
}
- else if (imp == "chess_poisson"){
+ else if (imp == "chess_poisson") {
double E1 = parameters.get<double>("E1", 17e6); //Faser
double nu1 = parameters.get<double>("nu1", 0.3);
double lambda1 = lameLambda(E1,nu1);
double E2 = parameters.get<double>("E2", 17e6); //Polymer, weicher, Querkontraktion groß
- double nu2 = parameters.get<double>("nu2", 0.5);
+ double nu2 = parameters.get<double>("nu2", 0.5);
double lambda2 = lameLambda(E2, nu2);
auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
- if ( (isInRotatedPlane(phi, z[dim-2], z[dim-1]) and isInRotatedPlane(phi + M_PI/2 , z[dim-2], z[dim-1])) or
- (isInRotatedPlane(phi + M_PI, z[dim-2], z[dim-1]) and isInRotatedPlane(phi + 3*M_PI/2, z[dim-2], z[dim-1])) )
- return lambda1;
- else
- return lambda2;
- };
-
+ if ( (isInRotatedPlane(phi, z[dim-2], z[dim-1]) and isInRotatedPlane(phi + M_PI/2 , z[dim-2], z[dim-1])) or
+ (isInRotatedPlane(phi + M_PI, z[dim-2], z[dim-1]) and isInRotatedPlane(phi + 3*M_PI/2, z[dim-2], z[dim-1])) )
+ return lambda1;
+ else
+ return lambda2;
+ };
+
return lambdaTerm;
}
- // else if (imp == "3Dchess_poisson"){
- // double E1 = parameters.get<double>("E1", 17e6); //Faser
- // double nu1 = parameters.get<double>("nu1", 0.3);
- // double lambda1 = lameLambda(E1,nu1);
- //
- // double E2 = parameters.get<double>("E2", 17e6); //Polymer, weicher, Querkontraktion groß
- // double nu2 = parameters.get<double>("nu2", 0.5);
- // double lambda2 = lameLambda(E2, nu2);
- //
- // auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
- // if (z[0]<0.5)
- // if ( (isInRotatedPlane(phi, z[1], z[2]) and isInRotatedPlane(phi + M_PI/2 , z[1], z[2])) or
- // (isInRotatedPlane(phi + M_PI, z[1], z[2]) and isInRotatedPlane(phi + 3*M_PI/2, z[1], z[2])) )
- // return lambda1;
- // else
- // return lambda2;
- // else
- // if ( (isInRotatedPlane(phi, z[1], z[2]) and isInRotatedPlane(phi + M_PI/2 , z[1], z[2])) or
- // (isInRotatedPlane(phi + M_PI, z[1], z[2]) and isInRotatedPlane(phi + 3*M_PI/2, z[1], z[2])) )
- // return lambda2;
- // else
- // return lambda1;
- // };
- //
- // return lambdaTerm;
- // }
- //
- // else if (imp == "vertical_bilayer_poisson"){
- // double E1 = parameters.get<double>("E1", 17e6); //material1
- // double nu1 = parameters.get<double>("nu1", 0.3);
- // double lambda1 = lameLambda(E1,nu1);
- // double E2 = parameters.get<double>("E2", 17e6); //material2
- // double nu2 = parameters.get<double>("nu2", 0.5);
- // double lambda2 = lameLambda(E2, nu2);
- //
- // auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
- // if ( isInRotatedPlane(phi+M_PI/2.0, z[dim-2], z[dim-1]) )
- // return lambda1;
- // else
- // return lambda2; };
- //
- // return lambdaTerm;
- // }
- //
- // else if (imp == "microstructured_bilayer_poisson"){
- // double E1 = parameters.get<double>("E1", 17e6); //material1
- // double nu1 = parameters.get<double>("nu1", 0.3);
- // double lambda1 = lameLambda(E1,nu1);
- // double E2 = parameters.get<double>("E2", 17e6); //material2
- // double nu2 = parameters.get<double>("nu2", 0.5);
- // double lambda2 = lameLambda(E2, nu2);
- //
- // auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
- // if ( isInRotatedPlane(phi, z[0]-0.5, z[1]) )
- // return lambda1;
- // else
- // return lambda2; };
- //
- // return lambdaTerm;
- // }
- //
- // else { //(imp == "bilayer_poisson")
- // double E1 = parameters.get<double>("E1", 17e6); //material1
- // double nu1 = parameters.get<double>("nu1", 0.3);
- // double lambda1 = lameLambda(E1, nu1);
- // double E2 = parameters.get<double>("E2", 17e6); //material2
- // double nu2 = parameters.get<double>("nu2", 0.5);
- // double lambda2 = lameLambda(E2, nu2);
- //
- // auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
- // if ( isInRotatedPlane(phi, z[dim-2], z[dim-1]) )
- // return lambda1;
- // else
- // return lambda2; };
- //
- // return lambdaTerm;
- // }
+ // else if (imp == "3Dchess_poisson"){
+ // double E1 = parameters.get<double>("E1", 17e6); //Faser
+ // double nu1 = parameters.get<double>("nu1", 0.3);
+ // double lambda1 = lameLambda(E1,nu1);
+ //
+ // double E2 = parameters.get<double>("E2", 17e6); //Polymer, weicher, Querkontraktion groß
+ // double nu2 = parameters.get<double>("nu2", 0.5);
+ // double lambda2 = lameLambda(E2, nu2);
+ //
+ // auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
+ // if (z[0]<0.5)
+ // if ( (isInRotatedPlane(phi, z[1], z[2]) and isInRotatedPlane(phi + M_PI/2 , z[1], z[2])) or
+ // (isInRotatedPlane(phi + M_PI, z[1], z[2]) and isInRotatedPlane(phi + 3*M_PI/2, z[1], z[2])) )
+ // return lambda1;
+ // else
+ // return lambda2;
+ // else
+ // if ( (isInRotatedPlane(phi, z[1], z[2]) and isInRotatedPlane(phi + M_PI/2 , z[1], z[2])) or
+ // (isInRotatedPlane(phi + M_PI, z[1], z[2]) and isInRotatedPlane(phi + 3*M_PI/2, z[1], z[2])) )
+ // return lambda2;
+ // else
+ // return lambda1;
+ // };
+ //
+ // return lambdaTerm;
+ // }
+ //
+ // else if (imp == "vertical_bilayer_poisson"){
+ // double E1 = parameters.get<double>("E1", 17e6); //material1
+ // double nu1 = parameters.get<double>("nu1", 0.3);
+ // double lambda1 = lameLambda(E1,nu1);
+ // double E2 = parameters.get<double>("E2", 17e6); //material2
+ // double nu2 = parameters.get<double>("nu2", 0.5);
+ // double lambda2 = lameLambda(E2, nu2);
+ //
+ // auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
+ // if ( isInRotatedPlane(phi+M_PI/2.0, z[dim-2], z[dim-1]) )
+ // return lambda1;
+ // else
+ // return lambda2; };
+ //
+ // return lambdaTerm;
+ // }
+ //
+ // else if (imp == "microstructured_bilayer_poisson"){
+ // double E1 = parameters.get<double>("E1", 17e6); //material1
+ // double nu1 = parameters.get<double>("nu1", 0.3);
+ // double lambda1 = lameLambda(E1,nu1);
+ // double E2 = parameters.get<double>("E2", 17e6); //material2
+ // double nu2 = parameters.get<double>("nu2", 0.5);
+ // double lambda2 = lameLambda(E2, nu2);
+ //
+ // auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
+ // if ( isInRotatedPlane(phi, z[0]-0.5, z[1]) )
+ // return lambda1;
+ // else
+ // return lambda2; };
+ //
+ // return lambdaTerm;
+ // }
+ //
+ // else { //(imp == "bilayer_poisson")
+ // double E1 = parameters.get<double>("E1", 17e6); //material1
+ // double nu1 = parameters.get<double>("nu1", 0.3);
+ // double lambda1 = lameLambda(E1, nu1);
+ // double E2 = parameters.get<double>("E2", 17e6); //material2
+ // double nu2 = parameters.get<double>("nu2", 0.5);
+ // double lambda2 = lameLambda(E2, nu2);
+ //
+ // auto lambdaTerm = [lambda1, lambda2, phi] (const Domain& z) {
+ // if ( isInRotatedPlane(phi, z[dim-2], z[dim-1]) )
+ // return lambda1;
+ // else
+ // return lambda2; };
+ //
+ // return lambdaTerm;
+ // }
}
@@ -931,17 +932,17 @@ public:
-// TODO add log here?
+// TODO add log here?
template <int dim>
-class PrestrainImp
+class PrestrainImp
{
public:
// static const int dim = 3;
static const int dimWorld = 3;
- using CellGridType = YaspGrid< dim, EquidistantOffsetCoordinates< double, dim>>;
+ using CellGridType = YaspGrid< dim, EquidistantOffsetCoordinates< double, dim> >;
// using GridView = CellGridType::LeafGridView;
using Domain = typename CellGridType::LeafGridView::template Codim<0>::Geometry::GlobalCoordinate;
// using Domain = GridView::Codim<0>::Geometry::GlobalCoordinate;
@@ -952,335 +953,335 @@ public:
using FuncMatrix = std::function< MatrixRT(const Domain&) >;
using FuncVector = std::function< VectorRT(const Domain&) >;
protected:
- // double p1, p2, theta;
- // double width; //Cell geometry
+ // double p1, p2, theta;
+ // double width; //Cell geometry
public:
-
+
// Func2Tensor getPrestrain(std::string imp)
Func2Tensor getPrestrain(ParameterTree parameters)
{
-
+
std::string imp = parameters.get<std::string>("material_prestrain_imp", "analytical_Example");
-
+
double width = parameters.get<double>("width", 1.0);
double height = parameters.get<double>("height", 1.0);
-
- double theta = parameters.get<double>("theta",1.0/4.0);
+
+ double theta = parameters.get<double>("theta",1.0/4.0);
double p1 = parameters.get<double>("rho1", 1.0);
double alpha = parameters.get<double>("alpha", 2.0);
double p2 = alpha*p1;
-
-
- if (imp == "homogeneous"){
+
+
+ if (imp == "homogeneous") {
Func2Tensor B = [p1] (const Domain& x) // ISOTROPIC PRESSURE
- {
- return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- };
+ {
+ return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ };
std::cout <<" Prestrain Type: homogeneous" << std::endl;
return B;
}
- else if (imp == "two_phase_material_1"){
- std::array<double,2> rho = parameters.get<std::array<double,2>>("rho", {1.0,3.0});
+ else if (imp == "two_phase_material_1") {
+ std::array<double,2> rho = parameters.get<std::array<double,2> >("rho", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("two_phase_material_1");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
-
- Func2Tensor B = [rho,indicatorFunction] (const Domain& x)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(x) == 1)
- return MatrixRT{{rho[0], 0.0 , 0.0}, {0.0, rho[0], 0.0}, {0.0, 0.0, rho[0]}};
- else
- return MatrixRT{{rho[1], 0.0 , 0.0}, {0.0, rho[1], 0.0}, {0.0, 0.0, rho[1]}};
- };
+
+ Func2Tensor B = [rho,indicatorFunction] (const Domain& x)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(x) == 1)
+ return MatrixRT{{rho[0], 0.0 , 0.0}, {0.0, rho[0], 0.0}, {0.0, 0.0, rho[0]}};
+ else
+ return MatrixRT{{rho[1], 0.0 , 0.0}, {0.0, rho[1], 0.0}, {0.0, 0.0, rho[1]}};
+ };
std::cout <<" Prestrain Type: two_phase_material_1" << std::endl;
return B;
}
- else if (imp == "material_neukamm"){
-// std::array<double,2> rho = parameters.get<std::array<double,2>>("rho", {1.0,3.0});
+ else if (imp == "material_neukamm") {
+ // std::array<double,2> rho = parameters.get<std::array<double,2>>("rho", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("material_neukamm");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
-
+
auto B1 = Python::make_function<MatrixRT>(module.get("b1"));
auto B2 = Python::make_function<MatrixRT>(module.get("b2"));
auto B3 = Python::make_function<MatrixRT>(module.get("b3"));
-
-// Func2Tensor B = [rho,indicatorFunction] (const Domain& x)
- Func2Tensor B = [indicatorFunction,B1,B2,B3] (const Domain& x)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(x) == 1)
- {
-// return MatrixRT{{rho[0], 0.0 , 0.0}, {0.0, rho[0], 0.0}, {0.0, 0.0, rho[0]}};
-// printmatrix(std::cout, B1(x), "Matrix B1(x)", "--");
- return B1(x);
- }
- else if (indicatorFunction(x) == 2)
-// return MatrixRT{{rho[1], 0.0 , 0.0}, {0.0, rho[1], 0.0}, {0.0, 0.0, rho[1]}};
- return B2(x);
- else
- return B3(x);
- };
+
+ // Func2Tensor B = [rho,indicatorFunction] (const Domain& x)
+ Func2Tensor B = [indicatorFunction,B1,B2,B3] (const Domain& x)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(x) == 1)
+ {
+ // return MatrixRT{{rho[0], 0.0 , 0.0}, {0.0, rho[0], 0.0}, {0.0, 0.0, rho[0]}};
+ // printmatrix(std::cout, B1(x), "Matrix B1(x)", "--");
+ return B1(x);
+ }
+ else if (indicatorFunction(x) == 2)
+ // return MatrixRT{{rho[1], 0.0 , 0.0}, {0.0, rho[1], 0.0}, {0.0, 0.0, rho[1]}};
+ return B2(x);
+ else
+ return B3(x);
+ };
std::cout <<" Prestrain Type: material_neukamm" << std::endl;
return B;
}
- else if (imp == "two_phase_material_2"){
- std::array<double,2> rho = parameters.get<std::array<double,2>>("rho", {1.0,3.0});
+ else if (imp == "two_phase_material_2") {
+ std::array<double,2> rho = parameters.get<std::array<double,2> >("rho", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("two_phase_material_2");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
-
- Func2Tensor B = [rho,indicatorFunction] (const Domain& x)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(x) == 1)
- return MatrixRT{{rho[0], 0.0 , 0.0}, {0.0, rho[0], 0.0}, {0.0, 0.0, rho[0]}};
- else
- return MatrixRT{{rho[1], 0.0 , 0.0}, {0.0, rho[1], 0.0}, {0.0, 0.0, rho[1]}};
- };
+
+ Func2Tensor B = [rho,indicatorFunction] (const Domain& x)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(x) == 1)
+ return MatrixRT{{rho[0], 0.0 , 0.0}, {0.0, rho[0], 0.0}, {0.0, 0.0, rho[0]}};
+ else
+ return MatrixRT{{rho[1], 0.0 , 0.0}, {0.0, rho[1], 0.0}, {0.0, 0.0, rho[1]}};
+ };
std::cout <<" Prestrain Type: two_phase_material_2" << std::endl;
return B;
}
- else if (imp == "two_phase_material_3"){
- std::array<double,2> rho = parameters.get<std::array<double,2>>("rho", {1.0,3.0});
+ else if (imp == "two_phase_material_3") {
+ std::array<double,2> rho = parameters.get<std::array<double,2> >("rho", {1.0,3.0});
// Python::Module module = Python::import(parameters.get<std::string>("two_phase_material_1"));
Python::Module module = Python::import("two_phase_material_3");
auto indicatorFunction = Python::make_function<double>(module.get("f"));
-
- Func2Tensor B = [rho,indicatorFunction] (const Domain& x)
- {
- // std::cout << "Test:" << indicatorFunction(z) << std::endl;
- if (indicatorFunction(x) == 1)
- return MatrixRT{{rho[0], 0.0 , 0.0}, {0.0, rho[0], 0.0}, {0.0, 0.0, rho[0]}};
- else
- return MatrixRT{{rho[1], 0.0 , 0.0}, {0.0, rho[1], 0.0}, {0.0, 0.0, rho[1]}};
- };
+
+ Func2Tensor B = [rho,indicatorFunction] (const Domain& x)
+ {
+ // std::cout << "Test:" << indicatorFunction(z) << std::endl;
+ if (indicatorFunction(x) == 1)
+ return MatrixRT{{rho[0], 0.0 , 0.0}, {0.0, rho[0], 0.0}, {0.0, 0.0, rho[0]}};
+ else
+ return MatrixRT{{rho[1], 0.0 , 0.0}, {0.0, rho[1], 0.0}, {0.0, 0.0, rho[1]}};
+ };
std::cout <<" Prestrain Type: two_phase_material_3" << std::endl;
return B;
}
else if (imp == "isotropic_bilayer")
- {
- Func2Tensor B = [p1,p2,theta] (const Domain& x) // ISOTROPIC PRESSURE
- {
- if (x[2] > 0)
- return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else if (x[2] < 0)
- return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
- else
- return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
-
- };
- std::cout <<" Prestrain Type: isotropic_bilayer " << std::endl;
- return B;
- }
-
+ {
+ Func2Tensor B = [p1,p2,theta] (const Domain& x) // ISOTROPIC PRESSURE
+ {
+ if (x[2] > 0)
+ return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else if (x[2] < 0)
+ return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
+ else
+ return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+
+ };
+ std::cout <<" Prestrain Type: isotropic_bilayer " << std::endl;
+ return B;
+ }
+
else if (imp == "analytical_Example")
- {
- Func2Tensor B = [p1,theta] (const Domain& x) // Bilayer with one rectangular Fiber & ISOTROPIC PRESSURE
- {
- // if (abs(x[0]) < (theta/2) && x[2] < 0 ) //does not make a difference
- if (abs(x[0]) < (theta/2) && x[2] < 0 && x[2] > -(1.0/2.0) )
- return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else
- return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- };
- std::cout <<" Prestrain Type: analytical_Example "<< std::endl;
- return B;
- }
+ {
+ Func2Tensor B = [p1,theta] (const Domain& x) // Bilayer with one rectangular Fiber & ISOTROPIC PRESSURE
+ {
+ // if (abs(x[0]) < (theta/2) && x[2] < 0 ) //does not make a difference
+ if (abs(x[0]) < (theta/2) && x[2] < 0 && x[2] > -(1.0/2.0) )
+ return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else
+ return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ };
+ std::cout <<" Prestrain Type: analytical_Example "<< std::endl;
+ return B;
+ }
else if (imp == "parametrized_Laminate")
- {
- Func2Tensor B = [p1,p2,theta] (const Domain& x)
- {
- if (abs(x[0]) < (theta/2) && x[2] < 0 )
- return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
- else if (abs(x[0]) > (theta/2) && x[2] > 0 )
- return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else
- return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- };
- std::cout <<"Prestrain Type: parametrized_Laminate"<< std::endl;
- return B;
- }
- else if (imp == "circle_fiber"){
-
- Func2Tensor B = [p1,theta,width] (const Domain& x) // Bilayer with one rectangular Fiber & ISOTROPIC PRESSURE
- {
- if (x[0] < 0 && sqrt(pow(x[1],2) + pow(x[2],2) ) < width/4.0 || 0 < x[0] && sqrt(pow(x[1],2) + pow(x[2],2) ) > width/4.0)
- return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else
- return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- };
+ {
+ Func2Tensor B = [p1,p2,theta] (const Domain& x)
+ {
+ if (abs(x[0]) < (theta/2) && x[2] < 0 )
+ return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
+ else if (abs(x[0]) > (theta/2) && x[2] > 0 )
+ return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else
+ return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ };
+ std::cout <<"Prestrain Type: parametrized_Laminate"<< std::endl;
+ return B;
+ }
+ else if (imp == "circle_fiber") {
+
+ Func2Tensor B = [p1,theta,width] (const Domain& x) // Bilayer with one rectangular Fiber & ISOTROPIC PRESSURE
+ {
+ if (x[0] < 0 && sqrt(pow(x[1],2) + pow(x[2],2) ) < width/4.0 || 0 < x[0] && sqrt(pow(x[1],2) + pow(x[2],2) ) > width/4.0)
+ return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else
+ return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ };
std::cout <<" Prestrain Type: circle_fiber"<< std::endl;
return B;
}
- else if (imp == "square_fiber"){
-
- Func2Tensor B = [p1,theta,width] (const Domain& x) // Bilayer with one rectangular Fiber & ISOTROPIC PRESSURE
- {
- if (x[0] < 0 && std::max(abs(x[1]), abs(x[2])) < width/4.0 || 0 < x[0] && std::max(abs(x[1]), abs(x[2])) > width/4.0)
- return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else
- return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- };
+ else if (imp == "square_fiber") {
+
+ Func2Tensor B = [p1,theta,width] (const Domain& x) // Bilayer with one rectangular Fiber & ISOTROPIC PRESSURE
+ {
+ if (x[0] < 0 && std::max(abs(x[1]), abs(x[2])) < width/4.0 || 0 < x[0] && std::max(abs(x[1]), abs(x[2])) > width/4.0)
+ return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else
+ return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ };
std::cout <<" Prestrain Type: square_fiber"<< std::endl;
return B;
}
else if (imp == "matrix_material_circles") // Matrix material with prestrained Fiber inclusions
- {
- int nF = parameters.get<int>("nF", 3); //number of Fibers in each Layer
- double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
-
- assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
-
- Func2Tensor B = [p1,p2,theta,nF,rF,height,width] (const Domain& x)
- {
- //TODO if Domain == 1... if Domain == 2 ...
- // double domainShift = 1.0/2.0;
- double domainShift = 0.0;
- // shift x to domain [0,1]^3
- FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
-
- MatrixRT output;
-
- // determine if point is in upper/lower Layer
- if ((0.0 <= s[2] && s[2] <= 1.0/2.0)) // upperLayer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/nF)*(i+1))
- {
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
- //
- if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
- output = MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- // return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else
- output = MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- // return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- // return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
- }
- }
- }
- else // lower Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/nF)*(i+1))
- {
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0};
-
- if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
- output = MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- // return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else
- output = MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- // return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- // return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
- }
- }
-
- }
- return output;
- };
- std::cout <<" Prestrain Type: matrix_material"<< std::endl;
- return B;
- }
-
+ {
+ int nF = parameters.get<int>("nF", 3); //number of Fibers in each Layer
+ double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
+
+ assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
+
+ Func2Tensor B = [p1,p2,theta,nF,rF,height,width] (const Domain& x)
+ {
+ //TODO if Domain == 1... if Domain == 2 ...
+ // double domainShift = 1.0/2.0;
+ double domainShift = 0.0;
+ // shift x to domain [0,1]^3
+ FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
+
+ MatrixRT output;
+
+ // determine if point is in upper/lower Layer
+ if ((0.0 <= s[2] && s[2] <= 1.0/2.0)) // upperLayer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/nF)*(i+1))
+ {
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
+ //
+ if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
+ output = MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ // return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else
+ output = MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ // return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ // return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
+ }
+ }
+ }
+ else // lower Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/nF)*(i+1))
+ {
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0};
+
+ if(sqrt(pow(s[0]-Fcenter[0],2)+pow(s[2]-Fcenter[1],2)) <= rF )
+ output = MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ // return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else
+ output = MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ // return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ // return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
+ }
+ }
+
+ }
+ return output;
+ };
+ std::cout <<" Prestrain Type: matrix_material"<< std::endl;
+ return B;
+ }
+
else if (imp == "matrix_material_squares") // Matrix material with prestrained Fiber inclusions
- {
- int nF = parameters.get<int>("nF", 3); //number of Fibers in each Layer
- double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
-
- assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
-
- Func2Tensor B = [p1,p2,theta,nF,rF,height,width] (const Domain& x)
- {
- //TODO if Domain == 1... if Domain == 2 ...
- // double domainShift = 1.0/2.0;
- double domainShift = 0.0;
- // shift x to domain [0,1]^3
- FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
-
- MatrixRT output;
-
- // determine if point is in upper/lower Layer
- if ((0.0 <= s[2] && s[2] <= 1.0/2.0)) // upperLayer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/nF)*(i+1))
- {
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
- //
- if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
- output = MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- // return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else
- output = MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- // return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- // return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
- }
- }
- }
- else // lower Layer
- {
- for(size_t i=0; i<nF ;i++) // running through all the Fibers..
- {
- if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/nF)*(i+1))
- {
- // compute Fiber center
- FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0};
-
- if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
- output = MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- // return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else
- output = MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- // return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
- // return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
- }
- }
-
- }
- return output;
- };
- std::cout <<" Prestrain Type: matrix_material"<< std::endl;
- return B;
- }
- else
- {
- // TODO other geometries etc...
-
- }
+ {
+ int nF = parameters.get<int>("nF", 3); //number of Fibers in each Layer
+ double rF = parameters.get<double>("rF", 0.5*(width/(2.0*nF)) ); //default: half of the max-fiber-radius mrF = (width/(2.0*nF))
+
+ assert( (2*rF)*nF <= width && (height/4)+rF <= height); //check that fibers are not bigger than Domain
+
+ Func2Tensor B = [p1,p2,theta,nF,rF,height,width] (const Domain& x)
+ {
+ //TODO if Domain == 1... if Domain == 2 ...
+ // double domainShift = 1.0/2.0;
+ double domainShift = 0.0;
+ // shift x to domain [0,1]^3
+ FieldVector<double,3> s = {x[0]+domainShift, x[1]+domainShift, x[2]+domainShift};
+
+ MatrixRT output;
+
+ // determine if point is in upper/lower Layer
+ if ((0.0 <= s[2] && s[2] <= 1.0/2.0)) // upperLayer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/nF)*(i+1))
+ {
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , 1.0/4.0};
+ //
+ if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
+ output = MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ // return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else
+ output = MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ // return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ // return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
+ }
+ }
+ }
+ else // lower Layer
+ {
+ for(size_t i=0; i<nF ; i++) // running through all the Fibers..
+ {
+ if(-1.0/2.0 + (1.0/nF)*i<= s[0] && s[0] <= -1.0/2.0 + (1.0/nF)*(i+1))
+ {
+ // compute Fiber center
+ FieldVector<double,2> Fcenter = { (1.0/(2.0*nF))+((1.0/double(nF))*i)-(1.0/2.0) , -1.0/4.0};
+
+ if(std::max( abs(s[0]-Fcenter[0]), abs(s[2]-Fcenter[1]) ) <= rF )
+ output = MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ // return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else
+ output = MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ // return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+ // return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
+ }
+ }
+
+ }
+ return output;
+ };
+ std::cout <<" Prestrain Type: matrix_material"<< std::endl;
+ return B;
+ }
+ else
+ {
+ // TODO other geometries etc...
+
+ }
// TODO ANISOTROPIC PRESSURE
-
+
}
-
-
-
+
+
+
FuncScalar getNormPrestrain(const FuncMatrix& B)
{
FuncScalar normB = [&](const Domain& z) {
- return norm(B(z));
- };
- return normB;
+ return norm(B(z));
+ };
+ return normB;
}
diff --git a/dune/microstructure/deprecated_headers/prestrainimp.hh b/dune/microstructure/deprecated_headers/prestrainimp.hh
index 443de31641e6406e5702a52621ab49606ddb0d07..adc6470d95639c9408e976328e93077534d64263 100644
--- a/dune/microstructure/deprecated_headers/prestrainimp.hh
+++ b/dune/microstructure/deprecated_headers/prestrainimp.hh
@@ -15,99 +15,99 @@ class PrestrainImp {
public:
- static const int dim = 3;
- static const int nCompo = 3;
+ static const int dim = 3;
+ static const int nCompo = 3;
-// using GridType_Ce = typename MicrostructuredRodGrid::CellGridType;
- using CellGridType = YaspGrid< dim, EquidistantOffsetCoordinates< double, dim>>;
- using GridView = CellGridType::LeafGridView;
- using Domain = GridView::Codim<0>::Geometry::GlobalCoordinate;
+ // using GridType_Ce = typename MicrostructuredRodGrid::CellGridType;
+ using CellGridType = YaspGrid< dim, EquidistantOffsetCoordinates< double, dim> >;
+ using GridView = CellGridType::LeafGridView;
+ using Domain = GridView::Codim<0>::Geometry::GlobalCoordinate;
- using MatrixRT = FieldMatrix< double, nCompo, nCompo>;
- using Func2Tensor = std::function< MatrixRT(const Domain&) >;
-// using Domain = typename GridType_Ce::LeafGridView::template Codim<0>::Geometry::GlobalCoordinate;
-// using MatrixRT = FieldMatrix< double, nCompo, nCompo>;
-// using Func2Tensor = std::function< MatrixRT(const Domain&) >;
+ using MatrixRT = FieldMatrix< double, nCompo, nCompo>;
+ using Func2Tensor = std::function< MatrixRT(const Domain&) >;
+ // using Domain = typename GridType_Ce::LeafGridView::template Codim<0>::Geometry::GlobalCoordinate;
+ // using MatrixRT = FieldMatrix< double, nCompo, nCompo>;
+ // using Func2Tensor = std::function< MatrixRT(const Domain&) >;
protected:
- double p1, p2, theta;
- double width; //cell geometry
+ double p1, p2, theta;
+ double width; //cell geometry
public:
- PrestrainImp(double p1, double p2, double theta, double width) : p1(p1), p2(p2), theta(theta), width(width){}
+ PrestrainImp(double p1, double p2, double theta, double width) : p1(p1), p2(p2), theta(theta), width(width){}
- Func2Tensor getPrestrain(unsigned int imp)
+ Func2Tensor getPrestrain(unsigned int imp)
+ {
+ using std::pow;
+ using std::abs;
+ using std::sqrt;
+ using std::sin;
+ using std::cos;
+
+ if (imp==1)
{
- using std::pow;
- using std::abs;
- using std::sqrt;
- using std::sin;
- using std::cos;
-
- if (imp==1)
- {
-
- Func2Tensor B1_ = [this] (const Domain& x) { // ISOTROPIC PRESSURE
- if (abs(x[0]) > (theta/2) && x[2] > 0)
- return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- if (abs(x[0]) < (theta/2) && x[2] < 0)
- return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
- else
- return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
-
- };
- std::cout <<" Prestrain Type: 1 "<< std::endl;
- return B1_;
- }
- else if (imp==2)
- {
- Func2Tensor B2_ = [this] (const Domain& x) { // Bilayer with one rectangular Fiber & ISOTROPIC PRESSURE
-
- if (abs(x[0]) < (theta/2) && x[2] < 0 && x[2] > -(1.0/2.0) )
- return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
- else
- return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
-
-
- };
- std::cout <<" Prestrain Type: 2 "<< std::endl;
- return B2_;
-
-
- }
-
-
-
-
- // TODO ANISOTROPIC PRESSURE
-
-// else if (imp==2)
-// {
-//
-// Func2Tensor B2_ = [this] (const Domain& z)
-// {
-// auto pi = std::acos(-1.0);
-// double beta = pi/4.0 + pi/4.0*z[1]; //z[1]=x3
-// MatrixRT Id(0);
-// for (int i=0;i<nCompo;i++)
-// Id[i][i]=1.0;
-// MatrixRT pressure = Id;
-// pressure *= 1.0/6.0;
-// MatrixRT n_ot_n = {
-// {cos(beta)*cos(beta), 0.0, cos(beta)*sin(beta)},
-// {0.0, 0.0, 0.0 },
-// {cos(beta)*sin(beta), 0.0, sin(beta)*sin(beta)}
-// };
-// n_ot_n*=0.5;
-// pressure += n_ot_n;
-// pressure *= this->a;
-// return pressure;
-// };
-// return B2_;
-// }
+
+ Func2Tensor B1_ = [this] (const Domain& x) { // ISOTROPIC PRESSURE
+ if (abs(x[0]) > (theta/2) && x[2] > 0)
+ return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ if (abs(x[0]) < (theta/2) && x[2] < 0)
+ return MatrixRT{{p2, 0.0 , 0.0}, {0.0, p2, 0.0}, {0.0, 0.0, p2}};
+ else
+ return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+
+ };
+ std::cout <<" Prestrain Type: 1 "<< std::endl;
+ return B1_;
}
+ else if (imp==2)
+ {
+ Func2Tensor B2_ = [this] (const Domain& x) { // Bilayer with one rectangular Fiber & ISOTROPIC PRESSURE
+
+ if (abs(x[0]) < (theta/2) && x[2] < 0 && x[2] > -(1.0/2.0) )
+ return MatrixRT{{p1, 0.0 , 0.0}, {0.0, p1, 0.0}, {0.0, 0.0, p1}};
+ else
+ return MatrixRT{{0.0, 0.0 , 0.0}, {0.0, 0.0, 0.0}, {0.0, 0.0, 0.0}};
+
+
+ };
+ std::cout <<" Prestrain Type: 2 "<< std::endl;
+ return B2_;
+
+
+ }
+
+
+
+
+ // TODO ANISOTROPIC PRESSURE
+
+ // else if (imp==2)
+ // {
+ //
+ // Func2Tensor B2_ = [this] (const Domain& z)
+ // {
+ // auto pi = std::acos(-1.0);
+ // double beta = pi/4.0 + pi/4.0*z[1]; //z[1]=x3
+ // MatrixRT Id(0);
+ // for (int i=0;i<nCompo;i++)
+ // Id[i][i]=1.0;
+ // MatrixRT pressure = Id;
+ // pressure *= 1.0/6.0;
+ // MatrixRT n_ot_n = {
+ // {cos(beta)*cos(beta), 0.0, cos(beta)*sin(beta)},
+ // {0.0, 0.0, 0.0 },
+ // {cos(beta)*sin(beta), 0.0, sin(beta)*sin(beta)}
+ // };
+ // n_ot_n*=0.5;
+ // pressure += n_ot_n;
+ // pressure *= this->a;
+ // return pressure;
+ // };
+ // return B2_;
+ // }
+ }
};
diff --git a/dune/microstructure/deprecated_headers/vtk_filler.hh b/dune/microstructure/deprecated_headers/vtk_filler.hh
index aa61fb2c1c8b475338d0d9def75e57c8709180ca..191272d3a09614ec3c7dfdc56f6eef1a5feafc0a 100644
--- a/dune/microstructure/deprecated_headers/vtk_filler.hh
+++ b/dune/microstructure/deprecated_headers/vtk_filler.hh
@@ -8,819 +8,819 @@
#include <dune/microstructure/prestrain_material_geometry.hh>
- using std::string;
- using namespace Dune;
- using namespace Functions;
- using namespace Functions::BasisFactory;
-
- //static const int dimworld = 3;
-
- //using GT = UGGrid<dim>; //typename MicrostructuredRodGrid::GT<dim>;
- //using GV = typename GT::LeafGridView;
- /*
- using MatrixRT = FieldMatrix< double, dimworld, dimworld>;
- using VectorRT = FieldVector< double, dimworld>;
- using ScalarRT = double;
-
-
- using ScalarCT = std::vector<double>;
- using VectorCT = BlockVector<FieldVector<double,1> >;
-
- using HierarchicVectorView = Dune::Functions::HierarchicVectorWrapper< VectorCT, double>;
-*/
- /*
- template<class Basis>
- static auto scalarDiscGlobalBasisFunc(
- const Basis& feBasis,
- std::function< double(const typename Basis::GridView::template Codim<0>::Geometry::GlobalCoordinate&) >& scalarFunc)
- {
- ScalarCT values;
- Functions::interpolate(feBasis, values, scalarFunc);
- auto discGlobalBasisFunc = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (feBasis, values);
- return discGlobalBasisFunc;
- }
-
- template<class Basis>
- static auto vectorDiscGlobalBasisFunc(
- const Basis& feBasis,
- std::function< FieldVector< double, dimworld>(const typename Basis::GridView::template Codim<0>::Geometry::GlobalCoordinate&) >& vectorFunc)
- {
- VectorCT values;
- Functions::interpolate(feBasis, values, vectorFunc);
- auto discGlobalBasisFunc = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(feBasis), HierarchicVectorView(values));
- return discGlobalBasisFunc;
- }
-*/
-
-template <int dim>
-class FTKfillerContainer {
-
-public:
-
- static const int dimworld = 3;
-
-// using GT = UGGrid<dim>; //typename MicrostructuredRodGrid::GT<dim>;
- using GT =YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
- using GV = typename GT::LeafGridView;
- using Domain = typename GV::template Codim<0>::Geometry::GlobalCoordinate;
- using MatrixRT = FieldMatrix< double, dimworld, dimworld>;
- using VectorRT = FieldVector< double, dimworld>;
- using ScalarRT = double;
- using FuncMatrix = std::function< MatrixRT(const Domain&) >;
- using FuncVector = std::function< VectorRT(const Domain&) >;
- using FuncScalar = std::function< ScalarRT(const Domain&) >;
+using std::string;
+using namespace Dune;
+using namespace Functions;
+using namespace Functions::BasisFactory;
- using ScalarCT = std::vector<double>;
- using VectorCT = BlockVector<FieldVector<double,1> >;
- using HierarchicVectorView = Dune::Functions::HierarchicVectorWrapper< VectorCT, double>;
+//static const int dimworld = 3;
+//using GT = UGGrid<dim>; //typename MicrostructuredRodGrid::GT<dim>;
+//using GV = typename GT::LeafGridView;
+/*
+ using MatrixRT = FieldMatrix< double, dimworld, dimworld>;
+ using VectorRT = FieldVector< double, dimworld>;
+ using ScalarRT = double;
- void vtkPrestrainNorm(const GV& gridView, const FuncMatrix& B, string filename) // Updated
- {
- VTKWriter<typename GT::LeafGridView> vtkWriter(gridView);
- Functions::LagrangeBasis<typename GT::LeafGridView, 1> feBasis(gridView);
- FuncScalar normB = PrestrainImp<dim>().getNormPrestrain(B);
-// auto discGlobalBasisFunc = scalarDiscGlobalBasisFunc(feBasis, normB);
- auto discGlobalBasisFunc = Dune::Functions::makeGridViewFunction(normB, gridView);
-// auto muLocal = localFunction(muGridF);
+ using ScalarCT = std::vector<double>;
+ using VectorCT = BlockVector<FieldVector<double,1> >;
+ using HierarchicVectorView = Dune::Functions::HierarchicVectorWrapper< VectorCT, double>;
+ */
+/*
+ template<class Basis>
+ static auto scalarDiscGlobalBasisFunc(
+ const Basis& feBasis,
+ std::function< double(const typename Basis::GridView::template Codim<0>::Geometry::GlobalCoordinate&) >& scalarFunc)
+ {
+ ScalarCT values;
+ Functions::interpolate(feBasis, values, scalarFunc);
+ auto discGlobalBasisFunc = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (feBasis, values);
+ return discGlobalBasisFunc;
+ }
+
+ template<class Basis>
+ static auto vectorDiscGlobalBasisFunc(
+ const Basis& feBasis,
+ std::function< FieldVector< double, dimworld>(const typename Basis::GridView::template Codim<0>::Geometry::GlobalCoordinate&) >& vectorFunc)
+ {
+ VectorCT values;
+ Functions::interpolate(feBasis, values, vectorFunc);
+ auto discGlobalBasisFunc = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(feBasis), HierarchicVectorView(values));
+ return discGlobalBasisFunc;
+ }
+ */
- ScalarCT values;
- Functions::interpolate(feBasis, values, normB);
- auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (feBasis, values);
- vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
- vtkWriter.write(filename);
+template <int dim>
+class FTKfillerContainer {
- }
+public:
- void vtkPrestrainDirector(const typename GT::LeafGridView& gridView, const FuncVector& b, string filename)
- {
- VTKWriter<typename GT::LeafGridView> vtkWriter(gridView);
+ static const int dimworld = 3;
- using namespace Functions::BasisFactory;
+ // using GT = UGGrid<dim>; //typename MicrostructuredRodGrid::GT<dim>;
+ using GT =YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
+ using GV = typename GT::LeafGridView;
+ using Domain = typename GV::template Codim<0>::Geometry::GlobalCoordinate;
+ using MatrixRT = FieldMatrix< double, dimworld, dimworld>;
+ using VectorRT = FieldVector< double, dimworld>;
+ using ScalarRT = double;
+ using FuncMatrix = std::function< MatrixRT(const Domain&) >;
+ using FuncVector = std::function< VectorRT(const Domain&) >;
+ using FuncScalar = std::function< ScalarRT(const Domain&) >;
- auto basis_CE = makeBasis(
- gridView,
- power<dimworld>(
- lagrange<1>(),
- flatLexicographic()));//flatInterleaved()
+ using ScalarCT = std::vector<double>;
+ using VectorCT = BlockVector<FieldVector<double,1> >;
+ using HierarchicVectorView = Dune::Functions::HierarchicVectorWrapper< VectorCT, double>;
- VectorCT values;
- Functions::interpolate(basis_CE, values, b);
- auto b_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_CE, values);
- vtkWriter.addVertexData(b_DGBF, VTK::FieldInfo("prestrain_director", VTK::FieldInfo::Type::vector, dimworld));
- vtkWriter.write(filename);
- }
+ void vtkPrestrainNorm(const GV& gridView, const FuncMatrix& B, string filename) // Updated
+ {
+ VTKWriter<typename GT::LeafGridView> vtkWriter(gridView);
+ Functions::LagrangeBasis<typename GT::LeafGridView, 1> feBasis(gridView);
+ FuncScalar normB = PrestrainImp<dim>().getNormPrestrain(B);
+ // auto discGlobalBasisFunc = scalarDiscGlobalBasisFunc(feBasis, normB);
+ auto discGlobalBasisFunc = Dune::Functions::makeGridViewFunction(normB, gridView);
+ // auto muLocal = localFunction(muGridF);
- void vtkMaterialCell(const GV& gridView_CE,
- const FuncScalar& mu_Func,
- std::string filename)
- {
- std::cout << "vtkMaterialCell ...\n";
+ ScalarCT values;
+ Functions::interpolate(feBasis, values, normB);
+ auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (feBasis, values);
+ vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
+ vtkWriter.write(filename);
- VTKWriter<GV> vtkWriter(gridView_CE);
+ }
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
+ void vtkPrestrainDirector(const typename GT::LeafGridView& gridView, const FuncVector& b, string filename)
+ {
+ VTKWriter<typename GT::LeafGridView> vtkWriter(gridView);
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addCellData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+ using namespace Functions::BasisFactory;
- vtkWriter.write(filename);
+ auto basis_CE = makeBasis(
+ gridView,
+ power<dimworld>(
+ lagrange<1>(),
+ flatLexicographic()));//flatInterleaved()
- std::cout << "vtkMaterialCell done.\n";
- }
+ VectorCT values;
+ Functions::interpolate(basis_CE, values, b);
+ auto b_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_CE, values);
+ vtkWriter.addVertexData(b_DGBF, VTK::FieldInfo("prestrain_director", VTK::FieldInfo::Type::vector, dimworld));
+ vtkWriter.write(filename);
+ }
- void vtkMaterial3DRod(const GV& gridView_R3D, double eps,
- const FuncVector& domain_Func, const FuncScalar& mu_Func,
- std::string filename)
- {
- std::cout << "vtkProblem ...\n";
+ void vtkMaterialCell(const GV& gridView_CE,
+ const FuncScalar& mu_Func,
+ std::string filename)
+ {
- VTKWriter<GV> vtkWriter(gridView_R3D);
+ std::cout << "vtkMaterialCell ...\n";
- // Vector data
- const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
+ VTKWriter<GV> vtkWriter(gridView_CE);
- VectorCT domain_Coeff;
- Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
- auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
- vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addCellData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+ vtkWriter.write(filename);
- vtkWriter.write(filename);
+ std::cout << "vtkMaterialCell done.\n";
+ }
- std::cout << "vtkProblem done.\n";
- }
+ void vtkMaterial3DRod(const GV& gridView_R3D, double eps,
+ const FuncVector& domain_Func, const FuncScalar& mu_Func,
+ std::string filename)
+ {
- void vtkProblemCell(const GV& gridView_CE,
- const FuncMatrix& B_Func, const FuncScalar& mu_Func,
- std::string filename)
- {
+ std::cout << "vtkProblem ...\n";
- std::cout << "vtkProblemCell ...\n";
-
- VTKWriter<GV> vtkWriter(gridView_CE);
-
- // Vector data
- const auto basis_CE = makeBasis(gridView_CE, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
-
-
- FuncVector Be1_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[0];
- };
- VectorCT Be1_Coeff;
- Functions::interpolate(basis_CE, Be1_Coeff, Be1_Func);
- auto Be1_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be1_Coeff));
- vtkWriter.addVertexData(Be1_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
-
- FuncVector Be2_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[1];
- };
- VectorCT Be2_Coeff;
- Functions::interpolate(basis_CE, Be2_Coeff, Be2_Func);
- auto Be2_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be2_Coeff));
- vtkWriter.addVertexData(Be2_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be3_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[2];
- };
- VectorCT Be3_Coeff;
- Functions::interpolate(basis_CE, Be3_Coeff, Be3_Func);
- auto Be3_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be3_Coeff));
- vtkWriter.addVertexData(Be3_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
-
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
- FuncScalar normB_Func = PrestrainImp<dim>().getNormPrestrain(B_Func);
- ScalarCT prestrain_Coeff;
- Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_Func);
- auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, prestrain_Coeff);
- vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
-
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
-
- vtkWriter.write(filename);
-
- std::cout << "vtkProblem done.\n";
- }
+ VTKWriter<GV> vtkWriter(gridView_R3D);
- void vtkProblemCellBVec(const GV& gridView_CE,
- const FuncMatrix& B_Func, const FuncVector& B_vec_Func, const FuncScalar& mu_Func,
- std::string filename)
- {
+ // Vector data
+ const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
- std::cout << "vtkProblemCellBVec ...\n";
+ VectorCT domain_Coeff;
+ Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
+ auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
+ vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
- VTKWriter<GV> vtkWriter(gridView_CE);
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
- // Vector data
- const auto basis_CE = makeBasis(gridView_CE, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+ vtkWriter.write(filename);
- FuncVector Be1_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[0];
- };
- VectorCT Be1_Coeff;
- Functions::interpolate(basis_CE, Be1_Coeff, Be1_Func);
- auto Be1_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be1_Coeff));
- vtkWriter.addVertexData(Be1_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
+ std::cout << "vtkProblem done.\n";
+ }
- FuncVector Be2_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[1];
- };
- VectorCT Be2_Coeff;
- Functions::interpolate(basis_CE, Be2_Coeff, Be2_Func);
- auto Be2_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be2_Coeff));
- vtkWriter.addVertexData(Be2_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
+ void vtkProblemCell(const GV& gridView_CE,
+ const FuncMatrix& B_Func, const FuncScalar& mu_Func,
+ std::string filename)
+ {
+ std::cout << "vtkProblemCell ...\n";
- FuncVector Be3_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[2];
- };
- VectorCT Be3_Coeff;
- Functions::interpolate(basis_CE, Be3_Coeff, Be3_Func);
- auto Be3_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be3_Coeff));
- vtkWriter.addVertexData(Be3_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
+ VTKWriter<GV> vtkWriter(gridView_CE);
+ // Vector data
+ const auto basis_CE = makeBasis(gridView_CE, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
- VectorCT B_vec_Coeff;
- Functions::interpolate(basis_CE, B_vec_Coeff, B_vec_Func);
- auto B_vec_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_CE, B_vec_Coeff);
- vtkWriter.addVertexData(B_vec_DGBF, VTK::FieldInfo("B_vec", VTK::FieldInfo::Type::vector, dimworld));
+ FuncVector Be1_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[0];
+ };
+ VectorCT Be1_Coeff;
+ Functions::interpolate(basis_CE, Be1_Coeff, Be1_Func);
+ auto Be1_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be1_Coeff));
+ vtkWriter.addVertexData(Be1_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
+ FuncVector Be2_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[1];
+ };
+ VectorCT Be2_Coeff;
+ Functions::interpolate(basis_CE, Be2_Coeff, Be2_Func);
+ auto Be2_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be2_Coeff));
+ vtkWriter.addVertexData(Be2_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
- FuncScalar normB_Func = PrestrainImp<dim>().getNormPrestrain(B_Func);
- ScalarCT prestrain_Coeff;
- Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_Func);
- auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, prestrain_Coeff);
- vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+ FuncVector Be3_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[2];
+ };
+ VectorCT Be3_Coeff;
+ Functions::interpolate(basis_CE, Be3_Coeff, Be3_Func);
+ auto Be3_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be3_Coeff));
+ vtkWriter.addVertexData(Be3_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
- vtkWriter.write(filename);
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
+ FuncScalar normB_Func = PrestrainImp<dim>().getNormPrestrain(B_Func);
+ ScalarCT prestrain_Coeff;
+ Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_Func);
+ auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, prestrain_Coeff);
+ vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
- std::cout << "vtkProblem done.\n";
- }
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+ vtkWriter.write(filename);
- void vtkProblem3DRod(const GV& gridView_R3D, double eps,
- const FuncVector& domain_Func, const FuncMatrix& B_Func, const FuncScalar& mu_Func,
- std::string filename)
- {
+ std::cout << "vtkProblem done.\n";
+ }
- std::cout << "vtkProblem ...\n";
-
- VTKWriter<GV> vtkWriter(gridView_R3D);
-
- // Vector data
- const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
-
- VectorCT domain_Coeff;
- Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
- auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
- vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be1_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[0];
- };
- VectorCT Be1_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be1_R3D_Coeff, Be1_R3D_Func);
- auto Be1_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be1_R3D_Coeff));
- vtkWriter.addVertexData(Be1_R3D_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be2_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[1];
- };
- VectorCT Be2_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be2_R3D_Coeff, Be2_R3D_Func);
- auto Be2_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be2_R3D_Coeff));
- vtkWriter.addVertexData(Be2_R3D_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be3_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[2];
- };
- VectorCT Be3_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be3_R3D_Coeff, Be3_R3D_Func);
- auto Be3_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be3_R3D_Coeff));
- vtkWriter.addVertexData(Be3_R3D_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
-
-
-
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
-
- FuncScalar normB_Func = PrestrainImp<dim>().getNormPrestrain(B_Func);
- FuncScalar normB_R3D_Func = [normB_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return normB_Func(x_Ce);
- };
- ScalarCT prestrain_Coeff;
- Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_R3D_Func);
- auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, prestrain_Coeff);
- vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
-
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
-
- vtkWriter.write(filename);
-
- std::cout << "vtkProblem done.\n";
- }
+ void vtkProblemCellBVec(const GV& gridView_CE,
+ const FuncMatrix& B_Func, const FuncVector& B_vec_Func, const FuncScalar& mu_Func,
+ std::string filename)
+ {
- void vtkProblem3DRodBVec(const GV& gridView_R3D, double eps,
- const FuncVector& domain_Func, const FuncMatrix& B_Func, const FuncVector& B_vec_Func, const FuncScalar& mu_Func,
- std::string filename)
- {
+ std::cout << "vtkProblemCellBVec ...\n";
- std::cout << "vtkProblem ...\n";
-
- VTKWriter<GV> vtkWriter(gridView_R3D);
-
- // Vector data
- const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
-
- VectorCT domain_Coeff;
- Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
- auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
- vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be1_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[0];
- };
- VectorCT Be1_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be1_R3D_Coeff, Be1_R3D_Func);
- auto Be1_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be1_R3D_Coeff));
- vtkWriter.addVertexData(Be1_R3D_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be2_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[1];
- };
- VectorCT Be2_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be2_R3D_Coeff, Be2_R3D_Func);
- auto Be2_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be2_R3D_Coeff));
- vtkWriter.addVertexData(Be2_R3D_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be3_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[2];
- };
- VectorCT Be3_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be3_R3D_Coeff, Be3_R3D_Func);
- auto Be3_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be3_R3D_Coeff));
- vtkWriter.addVertexData(Be3_R3D_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
-
- FuncVector B_vec_R3D_Func = [B_vec_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_vec_Func(x_Ce);
- };
- VectorCT B_vec_Coeff;
- Functions::interpolate(basis_R3D, B_vec_Coeff, B_vec_R3D_Func);
- auto B_vec_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_R3D, B_vec_Coeff);
- vtkWriter.addVertexData(B_vec_DGBF, VTK::FieldInfo("B_vec", VTK::FieldInfo::Type::vector, dimworld));
-
-
-
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
-
- FuncScalar normB_Func = PrestrainImp<dim>().getNormPrestrain(B_Func);
- FuncScalar normB_R3D_Func = [normB_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return normB_Func(x_Ce);
- };
- ScalarCT prestrain_Coeff;
- Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_R3D_Func);
- auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, prestrain_Coeff);
- vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
-
- FuncScalar mu_R3D_Func = [mu_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return mu_Func(x_Ce);
- };
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_R3D_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
-
- vtkWriter.write(filename);
-
- std::cout << "vtkProblem done.\n";
- }
+ VTKWriter<GV> vtkWriter(gridView_CE);
+
+ // Vector data
+ const auto basis_CE = makeBasis(gridView_CE, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
+
+
+ FuncVector Be1_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[0];
+ };
+ VectorCT Be1_Coeff;
+ Functions::interpolate(basis_CE, Be1_Coeff, Be1_Func);
+ auto Be1_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be1_Coeff));
+ vtkWriter.addVertexData(Be1_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be2_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[1];
+ };
+ VectorCT Be2_Coeff;
+ Functions::interpolate(basis_CE, Be2_Coeff, Be2_Func);
+ auto Be2_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be2_Coeff));
+ vtkWriter.addVertexData(Be2_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be3_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[2];
+ };
+ VectorCT Be3_Coeff;
+ Functions::interpolate(basis_CE, Be3_Coeff, Be3_Func);
+ auto Be3_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be3_Coeff));
+ vtkWriter.addVertexData(Be3_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
+
+
+ VectorCT B_vec_Coeff;
+ Functions::interpolate(basis_CE, B_vec_Coeff, B_vec_Func);
+ auto B_vec_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_CE, B_vec_Coeff);
+ vtkWriter.addVertexData(B_vec_DGBF, VTK::FieldInfo("B_vec", VTK::FieldInfo::Type::vector, dimworld));
+
+
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
+
+ FuncScalar normB_Func = PrestrainImp<dim>().getNormPrestrain(B_Func);
+ ScalarCT prestrain_Coeff;
+ Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_Func);
+ auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, prestrain_Coeff);
+ vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
+
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+
+ vtkWriter.write(filename);
+
+ std::cout << "vtkProblem done.\n";
+ }
+
+
+ void vtkProblem3DRod(const GV& gridView_R3D, double eps,
+ const FuncVector& domain_Func, const FuncMatrix& B_Func, const FuncScalar& mu_Func,
+ std::string filename)
+ {
+
+ std::cout << "vtkProblem ...\n";
+
+ VTKWriter<GV> vtkWriter(gridView_R3D);
+
+ // Vector data
+ const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
+
+ VectorCT domain_Coeff;
+ Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
+ auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
+ vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be1_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[0];
+ };
+ VectorCT Be1_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be1_R3D_Coeff, Be1_R3D_Func);
+ auto Be1_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be1_R3D_Coeff));
+ vtkWriter.addVertexData(Be1_R3D_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be2_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[1];
+ };
+ VectorCT Be2_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be2_R3D_Coeff, Be2_R3D_Func);
+ auto Be2_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be2_R3D_Coeff));
+ vtkWriter.addVertexData(Be2_R3D_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be3_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[2];
+ };
+ VectorCT Be3_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be3_R3D_Coeff, Be3_R3D_Func);
+ auto Be3_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be3_R3D_Coeff));
+ vtkWriter.addVertexData(Be3_R3D_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
+
+
+
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
+
+ FuncScalar normB_Func = PrestrainImp<dim>().getNormPrestrain(B_Func);
+ FuncScalar normB_R3D_Func = [normB_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return normB_Func(x_Ce);
+ };
+ ScalarCT prestrain_Coeff;
+ Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_R3D_Func);
+ auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, prestrain_Coeff);
+ vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
+
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+
+ vtkWriter.write(filename);
+
+ std::cout << "vtkProblem done.\n";
+ }
+
+ void vtkProblem3DRodBVec(const GV& gridView_R3D, double eps,
+ const FuncVector& domain_Func, const FuncMatrix& B_Func, const FuncVector& B_vec_Func, const FuncScalar& mu_Func,
+ std::string filename)
+ {
+
+ std::cout << "vtkProblem ...\n";
+
+ VTKWriter<GV> vtkWriter(gridView_R3D);
+
+ // Vector data
+ const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
+
+ VectorCT domain_Coeff;
+ Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
+ auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
+ vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be1_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[0];
+ };
+ VectorCT Be1_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be1_R3D_Coeff, Be1_R3D_Func);
+ auto Be1_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be1_R3D_Coeff));
+ vtkWriter.addVertexData(Be1_R3D_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be2_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[1];
+ };
+ VectorCT Be2_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be2_R3D_Coeff, Be2_R3D_Func);
+ auto Be2_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be2_R3D_Coeff));
+ vtkWriter.addVertexData(Be2_R3D_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be3_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[2];
+ };
+ VectorCT Be3_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be3_R3D_Coeff, Be3_R3D_Func);
+ auto Be3_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be3_R3D_Coeff));
+ vtkWriter.addVertexData(Be3_R3D_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
+
+ FuncVector B_vec_R3D_Func = [B_vec_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_vec_Func(x_Ce);
+ };
+ VectorCT B_vec_Coeff;
+ Functions::interpolate(basis_R3D, B_vec_Coeff, B_vec_R3D_Func);
+ auto B_vec_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_R3D, B_vec_Coeff);
+ vtkWriter.addVertexData(B_vec_DGBF, VTK::FieldInfo("B_vec", VTK::FieldInfo::Type::vector, dimworld));
+
+
+
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
+
+ FuncScalar normB_Func = PrestrainImp<dim>().getNormPrestrain(B_Func);
+ FuncScalar normB_R3D_Func = [normB_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return normB_Func(x_Ce);
+ };
+ ScalarCT prestrain_Coeff;
+ Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_R3D_Func);
+ auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, prestrain_Coeff);
+ vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
+
+ FuncScalar mu_R3D_Func = [mu_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return mu_Func(x_Ce);
+ };
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_R3D_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+
+ vtkWriter.write(filename);
+
+ std::cout << "vtkProblem done.\n";
+ }
};
/*
- template<int dim>
- void vtkProblemCell(const typename UGGrid<dim>::LeafGridView& gridView_CE,
- const std::function< MatrixRT(const typename UGGrid<dim>::LeafGridView::template Codim<0>::Geometry::GlobalCoordinate&)& B_Func,
- const std::function< ScalarRT(const typename UGGrid<dim>::LeafGridView::template Codim<0>::Geometry::GlobalCoordinate&)& mu_Func,
- std::string filename)
+ template<int dim>
+ void vtkProblemCell(const typename UGGrid<dim>::LeafGridView& gridView_CE,
+ const std::function< MatrixRT(const typename UGGrid<dim>::LeafGridView::template Codim<0>::Geometry::GlobalCoordinate&)& B_Func,
+ const std::function< ScalarRT(const typename UGGrid<dim>::LeafGridView::template Codim<0>::Geometry::GlobalCoordinate&)& mu_Func,
+ std::string filename)
{
- using GT = UGGrid<dim>;
- using GV = typename GT::LeafGridView;
- using Domain = typename GV::template Codim<0>::Geometry::GlobalCoordinate;
- using FuncMatrix = std::function< MatrixRT(const Domain&) >;
- using FuncVector = std::function< VectorRT(const Domain&) >;
- using FuncScalar = std::function< ScalarRT(const Domain&) >;
- std::cout << "vtkProblemCell ...\n";
-
- VTKWriter<GV> vtkWriter(gridView_CE);
-
- // Vector data
- const auto basis_CE = makeBasis(gridView_CE, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
-
-
- FuncVector Be1_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[0];
- };
- VectorCT Be1_Coeff;
- Functions::interpolate(basis_CE, Be1_Coeff, Be1_Func);
- auto Be1_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be1_Coeff));
- vtkWriter.addVertexData(Be1_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be2_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[1];
- };
- VectorCT Be2_Coeff;
- Functions::interpolate(basis_CE, Be2_Coeff, Be2_Func);
- auto Be2_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be2_Coeff));
- vtkWriter.addVertexData(Be2_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be3_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[2];
- };
- VectorCT Be3_Coeff;
- Functions::interpolate(basis_CE, Be3_Coeff, Be3_Func);
- auto Be3_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be3_Coeff));
- vtkWriter.addVertexData(Be3_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
-
-
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
-
- FuncScalar normB_Func = getNormPrestrain(B_Func);
- ScalarCT prestrain_Coeff;
- Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_Func);
- auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, prestrain_Coeff);
- vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
-
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
-
- vtkWriter.write(filename);
-
- std::cout << "vtkProblem done.\n";
+ using GT = UGGrid<dim>;
+ using GV = typename GT::LeafGridView;
+ using Domain = typename GV::template Codim<0>::Geometry::GlobalCoordinate;
+ using FuncMatrix = std::function< MatrixRT(const Domain&) >;
+ using FuncVector = std::function< VectorRT(const Domain&) >;
+ using FuncScalar = std::function< ScalarRT(const Domain&) >;
+ std::cout << "vtkProblemCell ...\n";
+
+ VTKWriter<GV> vtkWriter(gridView_CE);
+
+ // Vector data
+ const auto basis_CE = makeBasis(gridView_CE, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
+
+
+ FuncVector Be1_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[0];
+ };
+ VectorCT Be1_Coeff;
+ Functions::interpolate(basis_CE, Be1_Coeff, Be1_Func);
+ auto Be1_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be1_Coeff));
+ vtkWriter.addVertexData(Be1_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be2_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[1];
+ };
+ VectorCT Be2_Coeff;
+ Functions::interpolate(basis_CE, Be2_Coeff, Be2_Func);
+ auto Be2_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be2_Coeff));
+ vtkWriter.addVertexData(Be2_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be3_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[2];
+ };
+ VectorCT Be3_Coeff;
+ Functions::interpolate(basis_CE, Be3_Coeff, Be3_Func);
+ auto Be3_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be3_Coeff));
+ vtkWriter.addVertexData(Be3_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
+
+
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
+
+ FuncScalar normB_Func = getNormPrestrain(B_Func);
+ ScalarCT prestrain_Coeff;
+ Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_Func);
+ auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, prestrain_Coeff);
+ vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
+
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+
+ vtkWriter.write(filename);
+
+ std::cout << "vtkProblem done.\n";
}
void vtkProblemCellBVec(const GV& gridView_CE,
- const FuncMatrix& B_Func, const FuncVector& B_vec_Func, const FuncScalar& mu_Func,
- std::string filename)
+ const FuncMatrix& B_Func, const FuncVector& B_vec_Func, const FuncScalar& mu_Func,
+ std::string filename)
{
- std::cout << "vtkProblemCell ...\n";
+ std::cout << "vtkProblemCell ...\n";
- VTKWriter<GV> vtkWriter(gridView_CE);
+ VTKWriter<GV> vtkWriter(gridView_CE);
- // Vector data
- const auto basis_CE = makeBasis(gridView_CE, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
+ // Vector data
+ const auto basis_CE = makeBasis(gridView_CE, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
- FuncVector Be1_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[0];
- };
- VectorCT Be1_Coeff;
- Functions::interpolate(basis_CE, Be1_Coeff, Be1_Func);
- auto Be1_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be1_Coeff));
- vtkWriter.addVertexData(Be1_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
+ FuncVector Be1_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[0];
+ };
+ VectorCT Be1_Coeff;
+ Functions::interpolate(basis_CE, Be1_Coeff, Be1_Func);
+ auto Be1_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be1_Coeff));
+ vtkWriter.addVertexData(Be1_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
- FuncVector Be2_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[1];
- };
- VectorCT Be2_Coeff;
- Functions::interpolate(basis_CE, Be2_Coeff, Be2_Func);
- auto Be2_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be2_Coeff));
- vtkWriter.addVertexData(Be2_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
+ FuncVector Be2_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[1];
+ };
+ VectorCT Be2_Coeff;
+ Functions::interpolate(basis_CE, Be2_Coeff, Be2_Func);
+ auto Be2_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be2_Coeff));
+ vtkWriter.addVertexData(Be2_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
- FuncVector Be3_Func = [B_Func](const auto& x)
- {
- return B_Func(x)[2];
- };
- VectorCT Be3_Coeff;
- Functions::interpolate(basis_CE, Be3_Coeff, Be3_Func);
- auto Be3_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be3_Coeff));
- vtkWriter.addVertexData(Be3_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
+ FuncVector Be3_Func = [B_Func](const auto& x)
+ {
+ return B_Func(x)[2];
+ };
+ VectorCT Be3_Coeff;
+ Functions::interpolate(basis_CE, Be3_Coeff, Be3_Func);
+ auto Be3_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_CE), HierarchicVectorView(Be3_Coeff));
+ vtkWriter.addVertexData(Be3_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
- VectorCT B_vec_Coeff;
- Functions::interpolate(basis_CE, B_vec_Coeff, B_vec_Func);
- auto B_vec_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_CE, B_vec_Coeff);
- vtkWriter.addVertexData(B_vec_DGBF, VTK::FieldInfo("B_vec", VTK::FieldInfo::Type::vector, dimworld));
+ VectorCT B_vec_Coeff;
+ Functions::interpolate(basis_CE, B_vec_Coeff, B_vec_Func);
+ auto B_vec_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_CE, B_vec_Coeff);
+ vtkWriter.addVertexData(B_vec_DGBF, VTK::FieldInfo("B_vec", VTK::FieldInfo::Type::vector, dimworld));
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_CE);
- FuncScalar normB_Func = getNormPrestrain(B_Func);
- ScalarCT prestrain_Coeff;
- Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_Func);
- auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, prestrain_Coeff);
- vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
+ FuncScalar normB_Func = getNormPrestrain(B_Func);
+ ScalarCT prestrain_Coeff;
+ Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_Func);
+ auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, prestrain_Coeff);
+ vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
- vtkWriter.write(filename);
+ vtkWriter.write(filename);
- std::cout << "vtkProblem done.\n";
+ std::cout << "vtkProblem done.\n";
}
void vtkProblem3DRod(const GV& gridView_R3D, double eps,
- const FuncVector& domain_Func, const FuncMatrix& B_Func, const FuncScalar& mu_Func,
- std::string filename)
+ const FuncVector& domain_Func, const FuncMatrix& B_Func, const FuncScalar& mu_Func,
+ std::string filename)
{
- std::cout << "vtkProblem ...\n";
-
- VTKWriter<GV> vtkWriter(gridView_R3D);
-
- // Vector data
- const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
-
- VectorCT domain_Coeff;
- Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
- auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
- vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be1_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[0];
- };
- VectorCT Be1_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be1_R3D_Coeff, Be1_R3D_Func);
- auto Be1_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be1_R3D_Coeff));
- vtkWriter.addVertexData(Be1_R3D_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be2_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[1];
- };
- VectorCT Be2_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be2_R3D_Coeff, Be2_R3D_Func);
- auto Be2_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be2_R3D_Coeff));
- vtkWriter.addVertexData(Be2_R3D_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be3_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[2];
- };
- VectorCT Be3_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be3_R3D_Coeff, Be3_R3D_Func);
- auto Be3_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be3_R3D_Coeff));
- vtkWriter.addVertexData(Be3_R3D_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
-
-
-
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
-
- FuncScalar normB_Func = getNormPrestrain(B_Func);
- FuncScalar normB_R3D_Func = [normB_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return normB_Func(x_Ce);
- };
- ScalarCT prestrain_Coeff;
- Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_R3D_Func);
- auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, prestrain_Coeff);
- vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
-
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
-
- vtkWriter.write(filename);
-
- std::cout << "vtkProblem done.\n";
+ std::cout << "vtkProblem ...\n";
+
+ VTKWriter<GV> vtkWriter(gridView_R3D);
+
+ // Vector data
+ const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
+
+ VectorCT domain_Coeff;
+ Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
+ auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
+ vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be1_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[0];
+ };
+ VectorCT Be1_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be1_R3D_Coeff, Be1_R3D_Func);
+ auto Be1_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be1_R3D_Coeff));
+ vtkWriter.addVertexData(Be1_R3D_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be2_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[1];
+ };
+ VectorCT Be2_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be2_R3D_Coeff, Be2_R3D_Func);
+ auto Be2_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be2_R3D_Coeff));
+ vtkWriter.addVertexData(Be2_R3D_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be3_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[2];
+ };
+ VectorCT Be3_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be3_R3D_Coeff, Be3_R3D_Func);
+ auto Be3_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be3_R3D_Coeff));
+ vtkWriter.addVertexData(Be3_R3D_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
+
+
+
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
+
+ FuncScalar normB_Func = getNormPrestrain(B_Func);
+ FuncScalar normB_R3D_Func = [normB_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return normB_Func(x_Ce);
+ };
+ ScalarCT prestrain_Coeff;
+ Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_R3D_Func);
+ auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, prestrain_Coeff);
+ vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
+
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+
+ vtkWriter.write(filename);
+
+ std::cout << "vtkProblem done.\n";
}
void vtkProblem3DRodBVec(const GV& gridView_R3D, double eps,
- const FuncVector& domain_Func, const FuncMatrix& B_Func, const FuncVector& B_vec_Func, const FuncScalar& mu_Func,
- std::string filename)
+ const FuncVector& domain_Func, const FuncMatrix& B_Func, const FuncVector& B_vec_Func, const FuncScalar& mu_Func,
+ std::string filename)
{
- std::cout << "vtkProblem ...\n";
-
- VTKWriter<GV> vtkWriter(gridView_R3D);
-
- // Vector data
- const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
-
- VectorCT domain_Coeff;
- Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
- auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
- vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be1_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[0];
- };
- VectorCT Be1_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be1_R3D_Coeff, Be1_R3D_Func);
- auto Be1_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be1_R3D_Coeff));
- vtkWriter.addVertexData(Be1_R3D_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be2_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[1];
- };
- VectorCT Be2_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be2_R3D_Coeff, Be2_R3D_Func);
- auto Be2_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be2_R3D_Coeff));
- vtkWriter.addVertexData(Be2_R3D_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
-
-
- FuncVector Be3_R3D_Func = [B_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_Func(x_Ce)[2];
- };
- VectorCT Be3_R3D_Coeff;
- Functions::interpolate(basis_R3D, Be3_R3D_Coeff, Be3_R3D_Func);
- auto Be3_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
- (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be3_R3D_Coeff));
- vtkWriter.addVertexData(Be3_R3D_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
-
- FuncVector B_vec_R3D_Func = [B_vec_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return B_vec_Func(x_Ce);
- };
- VectorCT B_vec_Coeff;
- Functions::interpolate(basis_R3D, B_vec_Coeff, B_vec_R3D_Func);
- auto B_vec_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_R3D, B_vec_Coeff);
- vtkWriter.addVertexData(B_vec_DGBF, VTK::FieldInfo("B_vec", VTK::FieldInfo::Type::vector, dimworld));
-
-
-
- // Scalar data
- Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
-
- FuncScalar normB_Func = getNormPrestrain(B_Func);
- FuncScalar normB_R3D_Func = [normB_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return normB_Func(x_Ce);
- };
- ScalarCT prestrain_Coeff;
- Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_R3D_Func);
- auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, prestrain_Coeff);
- vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
-
- FuncScalar mu_R3D_Func = [mu_Func, eps](const auto& x)
- {
- auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
- return mu_Func(x_Ce);
- };
- ScalarCT material_Coeff;
- Functions::interpolate(scalarFeBasis, material_Coeff, mu_R3D_Func);
- auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
- (scalarFeBasis, material_Coeff);
- vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
-
- vtkWriter.write(filename);
-
- std::cout << "vtkProblem done.\n";
+ std::cout << "vtkProblem ...\n";
+
+ VTKWriter<GV> vtkWriter(gridView_R3D);
+
+ // Vector data
+ const auto basis_R3D = makeBasis(gridView_R3D, power<dimworld>(lagrange<1>(), flatLexicographic())); //flatInterleaved()
+
+ VectorCT domain_Coeff;
+ Functions::interpolate(basis_R3D, domain_Coeff, domain_Func);
+ auto domain_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(domain_Coeff));
+ vtkWriter.addVertexData(domain_DGBF, VTK::FieldInfo("Domain", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be1_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[0];
+ };
+ VectorCT Be1_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be1_R3D_Coeff, Be1_R3D_Func);
+ auto Be1_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be1_R3D_Coeff));
+ vtkWriter.addVertexData(Be1_R3D_DGBF, VTK::FieldInfo("B_e1", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be2_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[1];
+ };
+ VectorCT Be2_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be2_R3D_Coeff, Be2_R3D_Func);
+ auto Be2_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be2_R3D_Coeff));
+ vtkWriter.addVertexData(Be2_R3D_DGBF, VTK::FieldInfo("B_e2", VTK::FieldInfo::Type::vector, 3));
+
+
+ FuncVector Be3_R3D_Func = [B_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_Func(x_Ce)[2];
+ };
+ VectorCT Be3_R3D_Coeff;
+ Functions::interpolate(basis_R3D, Be3_R3D_Coeff, Be3_R3D_Func);
+ auto Be3_R3D_DGBF = Functions::makeDiscreteGlobalBasisFunction<VectorRT>
+ (Functions::subspaceBasis(basis_R3D), HierarchicVectorView(Be3_R3D_Coeff));
+ vtkWriter.addVertexData(Be3_R3D_DGBF, VTK::FieldInfo("B_e3", VTK::FieldInfo::Type::vector, 3));
+
+ FuncVector B_vec_R3D_Func = [B_vec_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return B_vec_Func(x_Ce);
+ };
+ VectorCT B_vec_Coeff;
+ Functions::interpolate(basis_R3D, B_vec_Coeff, B_vec_R3D_Func);
+ auto B_vec_DGBF = Functions::makeDiscreteGlobalBasisFunction< VectorRT > (basis_R3D, B_vec_Coeff);
+ vtkWriter.addVertexData(B_vec_DGBF, VTK::FieldInfo("B_vec", VTK::FieldInfo::Type::vector, dimworld));
+
+
+
+ // Scalar data
+ Functions::LagrangeBasis<GV, 1> scalarFeBasis(gridView_R3D);
+
+ FuncScalar normB_Func = getNormPrestrain(B_Func);
+ FuncScalar normB_R3D_Func = [normB_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return normB_Func(x_Ce);
+ };
+ ScalarCT prestrain_Coeff;
+ Functions::interpolate(scalarFeBasis, prestrain_Coeff, normB_R3D_Func);
+ auto normB_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, prestrain_Coeff);
+ vtkWriter.addVertexData(normB_DGBF, VTK::FieldInfo("normB", VTK::FieldInfo::Type::scalar, 1));
+
+ FuncScalar mu_R3D_Func = [mu_Func, eps](const auto& x)
+ {
+ auto x_Ce = {x[0]/eps - int(x[0]/eps),x[1],x[2]};
+ return mu_Func(x_Ce);
+ };
+ ScalarCT material_Coeff;
+ Functions::interpolate(scalarFeBasis, material_Coeff, mu_R3D_Func);
+ auto material_DGBF = Functions::makeDiscreteGlobalBasisFunction< ScalarRT >
+ (scalarFeBasis, material_Coeff);
+ vtkWriter.addVertexData(material_DGBF, VTK::FieldInfo("mu", VTK::FieldInfo::Type::scalar, 1));
+
+ vtkWriter.write(filename);
+
+ std::cout << "vtkProblem done.\n";
}
-*/
+ */
#endif
diff --git a/dune/microstructure/energies/discretekirchhoffbendingenergyprestrained.hh b/dune/microstructure/energies/discretekirchhoffbendingenergyprestrained.hh
index c86a1e7e5378d57083285cd91db5d453b0f64284..757e4d60131d85b1ff2e151c2c48922e7394ccff 100644
--- a/dune/microstructure/energies/discretekirchhoffbendingenergyprestrained.hh
+++ b/dune/microstructure/energies/discretekirchhoffbendingenergyprestrained.hh
@@ -9,57 +9,28 @@
#include <dune/gfe/assemblers/localenergy.hh>
#include <dune/gfe/bendingisometryhelper.hh>
#include <dune/gfe/tensor3.hh>
+#include <dune/gfe/linearalgebra.hh>
#include <dune/localfunctions/lagrange/lagrangesimplex.hh>
-
+#include <dune/microstructure/bendingisometryaddons.hh>
#include <dune/microstructure/microproblem.hh>
#include <cmath>
-#include <string>
+#include <string>
#include <map>
- // template <class T>
- // constexpr std::string_view type_name()
- // {
- // using namespace std;
- // #ifdef __clang__
- // string_view p = __PRETTY_FUNCTION__;
- // return string_view(p.data() + 34, p.size() - 34 - 1);
- // #elif defined(__GNUC__)
- // string_view p = __PRETTY_FUNCTION__;
- // # if __cplusplus < 201402
- // return string_view(p.data() + 36, p.size() - 36 - 1);
- // # else
- // return string_view(p.data() + 49, p.find(';', 49) - 49);
- // # endif
- // #elif defined(_MSC_VER)
- // string_view p = __FUNCSIG__;
- // return string_view(p.data() + 84, p.size() - 84 - 7);
- // #endif
- // }
-
-
-
-
-/**
- * \brief Assemble the discrete Kirchhoff bending energy for a single element.
- *
- * The Kirchhoff bending energy consists of two parts:
- *
- * 1. The energy of Qhom(II - Beff) where II is the second fundamental form of the surface parametrized by the deformation function
- * and Beff is a (given) effective prestrain tensor.
- *
- * This contribution is split intro three parts which corresponds to the binomial formula (a+b)^2 = a^2 + 2ab + b^2
- * each term is discretized separately.
- *
- * 2. An integral over the scalar product of a forcing term and the discrete deformation
- * (i.e. the evaluation of localFunction_ ).
+/**
+ * \brief Assemble the discrete Kirchhoff bending energy for a single element.
+ *
+ * The Kirchhoff bending energy consists of: Qhom(II - Beff) where II is the second fundamental form of the surface parametrized by the deformation function
+ * and Beff is a (given) effective prestrain tensor. This contribution is split intro three parts which corresponds to the binomial formula (a+b)^2 = a^2 + 2ab + b^2
+ * each term is discretized separately.
*/
namespace Dune::GFE
{
- template<class Basis, class LocalDiscreteKirchhoffFunction, class LocalForce, class TargetSpace>
+ template<class Basis, class DiscreteKirchhoffFunction, class TargetSpace>
class DiscreteKirchhoffBendingEnergyPrestrained
: public Dune::GFE::LocalEnergy<Basis,TargetSpace>
{
@@ -67,7 +38,7 @@ namespace Dune::GFE
typedef typename Basis::GridView GridView;
typedef typename GridView::ctype DT;
typedef typename TargetSpace::ctype RT;
- typedef typename LocalDiscreteKirchhoffFunction::DerivativeType DerivativeType;
+ typedef typename DiscreteKirchhoffFunction::DerivativeType DerivativeType;
typedef typename Dune::FieldMatrix<double,2,2> PrestrainType;
typedef typename Dune::FieldMatrix<double,3,3> MatrixType;
// Grid dimension
@@ -77,13 +48,13 @@ namespace Dune::GFE
using Domain = typename Basis::GridView ::template Codim<0>::Geometry::GlobalCoordinate;
- using IndicatorType = std::function<int(const Domain&)>;
- using IndicatorGridViewFunctionType = GridViewFunction<int(const Domain&), GridView>;
- using LocalIndicatorFunctionType = LocalFunction<int(const Domain&), typename GridViewEntitySet<GridView, 0>::Element >;
+ using IndicatorType = std::function<int (const Domain&)>;
+ using IndicatorGridViewFunctionType = GridViewFunction<int (const Domain&), GridView>;
+ using LocalIndicatorFunctionType = LocalFunction<int (const Domain&), typename GridViewEntitySet<GridView, 0>::Element >;
- LocalDiscreteKirchhoffFunction& localFunction_;
+ DiscreteKirchhoffFunction& localFunction_;
- LocalForce& localForce_;
+ // LocalForce& localForce_;
P2LocalFiniteElement lagrangeLFE_;
@@ -106,26 +77,26 @@ namespace Dune::GFE
// Python::Module module_;
// Python::Callable microstructureClass_; //we use this class to create microstructure objects passed to microproblem.
- // MicroProblem microProblem_;
+ // MicroProblem microProblem_;
- // std::shared_ptr<Python::Callable> anotherMicroProblem_;
- // std::shared_ptr<MicroProblem> microProblem_;
+ // std::shared_ptr<Python::Callable> anotherMicroProblem_;
+ // std::shared_ptr<MicroProblem> microProblem_;
- // std::vector<std::shared_ptr<MicroProblem>> microProblem_;
- std::map<int,std::shared_ptr<MicroProblem> > microProblem_;
+ // std::vector<std::shared_ptr<MicroProblem>> microProblem_;
+ std::map<int,std::shared_ptr<MicroProblem> > microProblem_;
IndicatorType macroPhaseIndicator_;
mutable LocalIndicatorFunctionType macroPhaseIndicatorLocalFunction_;
- int numberOfMacroPhases_;
+ int numberOfMacroPhases_;
std::vector<bool> constantMicrostructureVector_;
/**
- * @brief This is just used to initialize the MicrostructureClass with some macroscopic point
+ * @brief This is just used to initialize the MicrostructureClass with some macroscopic point
* in the case of a macroscopically varying microstructure.
*/
// static constexpr Domain initialMacroPoint{0.0};
@@ -137,18 +108,16 @@ namespace Dune::GFE
public:
- DiscreteKirchhoffBendingEnergyPrestrained(LocalDiscreteKirchhoffFunction &localFunction,
- LocalForce &localForce,
- const Dune::ParameterTree& parameterSet,
- const Python::Module pyModule)
- : localFunction_(localFunction),
- localForce_(localForce),
- parameterSet_(parameterSet),
- module_(pyModule),
- globalMicrostructureClass_(setupGlobalMicrostructureClass())
- // microstructureClass_(setupMicrostructureClass())
- //
- // microProblem_(setupMicroProblem()) // This is necessary since there is no default.constructor in for MicroProblem class.
+ DiscreteKirchhoffBendingEnergyPrestrained(DiscreteKirchhoffFunction &localFunction,
+ const Dune::ParameterTree& parameterSet,
+ const Python::Module pyModule)
+ : localFunction_(localFunction),
+ parameterSet_(parameterSet),
+ module_(pyModule),
+ globalMicrostructureClass_(setupGlobalMicrostructureClass())
+ // microstructureClass_(setupMicrostructureClass())
+ //
+ // microProblem_(setupMicroProblem()) // This is necessary since there is no default.constructor in for MicroProblem class.
{
// setupGlobalMicrostructureClass();
setupEffectiveQuantities();
@@ -156,7 +125,7 @@ namespace Dune::GFE
// const Python::Callable setupMicrostructureClass() const
- // {
+ // {
// std::cout << "Enter setupMicroStructureClass" << std::endl;
// Python::Callable microstructureClass;
@@ -174,24 +143,24 @@ namespace Dune::GFE
// std::cerr << "Error during DiscreteKirchhoffBendingEnergyPrestrained setup" << e << std::endl;
// }
// }
-
+
// return microstructureClass;
// }
-
-
+
+
const Python::Callable setupGlobalMicrostructureClass() const
- {
+ {
Python::Callable globalMicrostructureClass;
- try {
- globalMicrostructureClass = module_.get("GlobalMicrostructure");
- } catch (Dune::Exception &e) {
- std::cout << "There is no class 'GlobalMicrostructure' in the Python module!" << std::endl;
- std::cerr << "Error during DiscreteKirchhoffBendingEnergyPrestrained setup" << e << std::endl;
- }
+ try {
+ globalMicrostructureClass = module_.get("GlobalMicrostructure");
+ } catch (Dune::Exception &e) {
+ std::cout << "There is no class 'GlobalMicrostructure' in the Python module!" << std::endl;
+ std::cerr << "Error during DiscreteKirchhoffBendingEnergyPrestrained setup" << e << std::endl;
+ }
// TEST
// std::cout << "Trying to access inner class directly without creating an instance:" << std::endl;
@@ -202,7 +171,7 @@ namespace Dune::GFE
// const Python::Callable setupMicrostructureClass() const
- // {
+ // {
// // std::cout << "Enter setupMicroStructureClass" << std::endl;
// Python::Callable microstructureClass;
@@ -230,233 +199,233 @@ namespace Dune::GFE
// // return MicroProblem();
// if(parameterSet_.get<bool>("macroscopically_varying_microstructure", 0))
// return MicroProblem(microstructureClass_(0),parameterSet_, module_); //TODO Replace 0 with Domain input type. using Domain = typename GridView::template Codim<0>::Geometry::GlobalCoordinate;
- // else
+ // else
// return MicroProblem(microstructureClass_(),parameterSet_, module_); //pass a constant microstructure object
// }
void setupEffectiveQuantities()
{
- /**
- * @brief If the microstructure is constant on a macroscopic level,
- * we read the effective quantitites from the ParameterTree
- * and set them up once here.
- *
- * If no effective quanitities are provided, we solve the
- * micro problem once to obtain them.
- *
- *
- * If the microscture is varying on a macroscopic scale,
- * the microProblem is initialized with a default value
- * and gets updated for each each macro point later on
- * in the quadrature loop.
- */
+ /**
+ * @brief If the microstructure is constant on a macroscopic level,
+ * we read the effective quantitites from the ParameterTree
+ * and set them up once here.
+ *
+ * If no effective quanitities are provided, we solve the
+ * micro problem once to obtain them.
+ *
+ *
+ * If the microscture is varying on a macroscopic scale,
+ * the microProblem is initialized with a default value
+ * and gets updated for each each macro point later on
+ * in the quadrature loop.
+ */
- //create instance of globalMicrostructureClass_
- // Python::Reference globalMicrostructure = globalMicrostructureClass_();
- globalMicrostructure_ = globalMicrostructureClass_();
+ //create instance of globalMicrostructureClass_
+ // Python::Reference globalMicrostructure = globalMicrostructureClass_();
+ globalMicrostructure_ = globalMicrostructureClass_();
- // = globalMicrostructure.get("macroPhases", 1)
- globalMicrostructure_.get("macroPhases").toC<int>(numberOfMacroPhases_);
- std::cout << "numberOfMacroPhases: " << numberOfMacroPhases_ << std::endl;
+ // = globalMicrostructure.get("macroPhases", 1)
+ globalMicrostructure_.get("macroPhases").toC<int>(numberOfMacroPhases_);
+ std::cout << "numberOfMacroPhases: " << numberOfMacroPhases_ << std::endl;
- // Get the macroPhaseIndicator function
- try {
- macroPhaseIndicator_ = Python::make_function<int>(Python::Callable(globalMicrostructure_.get("macroPhaseIndicator")));
- // auto macroPhaseIndicatorGVF = Dune::Functions::makeGridViewFunction(macroPhaseIndicator_, localFunction_.gridView());
- macroPhaseIndicatorLocalFunction_ = localFunction(Dune::Functions::makeGridViewFunction(macroPhaseIndicator_, localFunction_.gridView()));
- } catch (Dune::Exception &e) {
- std::cout << "Piecewise constant microstructure but no macroPhaseIndicator was provided. Assuming macroscopically constant microstructure" << std::endl;
- // Using constant True function
- macroPhaseIndicator_ = Python::make_function<int>(Python::Callable(Python::evaluate("lambda x: 1")));
- }
- //VTK-Write macroPhaseIndicator:
- if(parameterSet_.get<bool>("VTKwriteMacroPhaseIndicator", 0))
- VTKwriteMacroPhaseIndicator();
-
+ // Get the macroPhaseIndicator function
+ try {
+ macroPhaseIndicator_ = Python::make_function<int>(Python::Callable(globalMicrostructure_.get("macroPhaseIndicator")));
+ // auto macroPhaseIndicatorGVF = Dune::Functions::makeGridViewFunction(macroPhaseIndicator_, localFunction_.gridView());
+ macroPhaseIndicatorLocalFunction_ = localFunction(Dune::Functions::makeGridViewFunction(macroPhaseIndicator_, localFunction_.gridView()));
+ } catch (Dune::Exception &e) {
+ std::cout << "Piecewise constant microstructure but no macroPhaseIndicator was provided. Assuming macroscopically constant microstructure" << std::endl;
+ // Using constant True function
+ macroPhaseIndicator_ = Python::make_function<int>(Python::Callable(Python::evaluate("lambda x: 1")));
+ }
+ //VTK-Write macroPhaseIndicator:
+ if(parameterSet_.get<bool>("VTKwriteMacroPhaseIndicator", 0))
+ VTKwriteMacroPhaseIndicator();
- Qhom_.resize(numberOfMacroPhases_);
- Beff_.resize(numberOfMacroPhases_);
- constantMicrostructureVector_.resize(numberOfMacroPhases_);
-
+ Qhom_.resize(numberOfMacroPhases_);
+ Beff_.resize(numberOfMacroPhases_);
- for(size_t i=0; i<numberOfMacroPhases_; i++)
- {
- std::cout << "------------------- " + std::to_string(i+1) + "-th macro phase setup " + "------------------- " << std::endl;
- LocalMicrostructureClass_.push_back(globalMicrostructure_.get("LocalMicrostructure_"+std::to_string(i+1)));
+ constantMicrostructureVector_.resize(numberOfMacroPhases_);
- // microProblem_.push_back(std::make_shared<MicroProblem>(LocalMicrostructureClass_[i](),parameterSet_, module_));
- // also store these quantities in a vector instead?
- //---Create localMicrostructure object
- // auto LocalMicrostructure = microProblem_[i]->getMicrostructure();
- auto LocalMicrostructure = LocalMicrostructureClass_[i]();
+ for(size_t i=0; i<numberOfMacroPhases_; i++)
+ {
+ std::cout << "------------------- " + std::to_string(i+1) + "-th macro phase setup " + "------------------- " << std::endl;
+ LocalMicrostructureClass_.push_back(globalMicrostructure_.get("LocalMicrostructure_"+std::to_string(i+1)));
- // std::string testString;
- // LocalMicrostructure.get("phase" + std::to_string(1) + "_type").toC<std::string>(testString);
- // std::cout << "Teststring:" << testString << std::endl;
+ // microProblem_.push_back(std::make_shared<MicroProblem>(LocalMicrostructureClass_[i](),parameterSet_, module_));
+ // also store these quantities in a vector instead?
+ //---Create localMicrostructure object
+ // auto LocalMicrostructure = microProblem_[i]->getMicrostructure();
+ auto LocalMicrostructure = LocalMicrostructureClass_[i]();
- // bool .macroPhase2_readEffectiveQuantities
- bool constantMicrostructure = true;
- globalMicrostructure_.get("macroPhase" + std::to_string(i+1) + "_constantMicrostructure").toC<bool>(constantMicrostructure);
+ // std::string testString;
+ // LocalMicrostructure.get("phase" + std::to_string(1) + "_type").toC<std::string>(testString);
+ // std::cout << "Teststring:" << testString << std::endl;
- constantMicrostructureVector_[i] = constantMicrostructure;
- if (constantMicrostructure)
- {
- std::cout << "[Constant Microstructure]" << std::endl;
- // Check whether to read effective quantities for current phase or to compute them.
- bool readEffectiveQuantities = false; //default
- globalMicrostructure_.get("macroPhase" + std::to_string(i+1) + "_readEffectiveQuantities").toC<bool>(readEffectiveQuantities);
-
- std::cout << "readEffectiveQuantities:" << readEffectiveQuantities << std::endl;
-
- if(readEffectiveQuantities)
- {
- std::cout << "(Read effective quantities for phase " + std::to_string(i+1) + ")" << std::endl;
- LocalMicrostructure.get("effectiveQuadraticForm").toC<Dune::FieldMatrix<double,3,3>>(Qhom_[i]);
- LocalMicrostructure.get("effectivePrestrain").toC<Dune::FieldMatrix<double,2,2>>(Beff_[i]);
- } else {
- std::cout << "(Solving the Micro-Problem once to obtain effective quantities ...)" << std::endl;
-
- microProblem_.insert({i,std::make_shared<MicroProblem>(LocalMicrostructureClass_[i](),parameterSet_, module_)});
- (microProblem_[i])->getEffectiveQuantities(Beff_[i],Qhom_[i]);
- }
-
- printmatrix(std::cout, Qhom_[i], "Setup effective Quadratic form (Qhom) for Phase " +std::to_string(i+1) + " as ", "--");
- printmatrix(std::cout, Beff_[i], "Setup effective prestrain (Beff) for Phase " +std::to_string(i+1) + " as ", "--");
- }
- else
- std::cout << "[Macroscopically varying Microstructure]" << std::endl;
+ // bool .macroPhase2_readEffectiveQuantities
+ bool constantMicrostructure = true;
+ globalMicrostructure_.get("macroPhase" + std::to_string(i+1) + "_constantMicrostructure").toC<bool>(constantMicrostructure);
- } //end-macroPhaseLoop
+ constantMicrostructureVector_[i] = constantMicrostructure;
- // TEST Call python inner-class
- // std::cout << "Try to access inner python-class: " << std::endl;
- // Python::Reference innerClass;
- // globalMicrostructure_.get("lg").toC<Python::Reference>(innerClass); //conversion to C of Python::Reference not implemented!
+ if (constantMicrostructure)
+ {
+ std::cout << "[Constant Microstructure]" << std::endl;
+ // Check whether to read effective quantities for current phase or to compute them.
+ bool readEffectiveQuantities = false; //default
+ globalMicrostructure_.get("macroPhase" + std::to_string(i+1) + "_readEffectiveQuantities").toC<bool>(readEffectiveQuantities);
- // Python::Callable LocalMicrostructureClass = globalMicrostructure_.get(Python::Callable("LocalMicrostructure"));
- // Python::Callable LocalMicrostructureClass = globalMicrostructure_.get("LocalMicrostructure_1");
- // LocalMicrostructureClass_[0] = globalMicrostructure_.get("LocalMicrostructure_1");
+ std::cout << "readEffectiveQuantities:" << readEffectiveQuantities << std::endl;
- // create instance of inner class:
- // auto LocalMicrostructure = LocalMicrostructureClass();
+ if(readEffectiveQuantities)
+ {
+ std::cout << "(Read effective quantities for phase " + std::to_string(i+1) + ")" << std::endl;
+ LocalMicrostructure.get("effectiveQuadraticForm").toC<Dune::FieldMatrix<double,3,3> >(Qhom_[i]);
+ LocalMicrostructure.get("effectivePrestrain").toC<Dune::FieldMatrix<double,2,2> >(Beff_[i]);
+ } else {
+ std::cout << "(Solving the Micro-Problem once to obtain effective quantities ...)" << std::endl;
+
+ microProblem_.insert({i,std::make_shared<MicroProblem>(LocalMicrostructureClass_[i](),parameterSet_, module_)});
+ (microProblem_[i])->getEffectiveQuantities(Beff_[i],Qhom_[i]);
+ }
+ printmatrix(std::cout, Qhom_[i], "Setup effective Quadratic form (Qhom) for Phase " +std::to_string(i+1) + " as ", "--");
+ printmatrix(std::cout, Beff_[i], "Setup effective prestrain (Beff) for Phase " +std::to_string(i+1) + " as ", "--");
+ }
+ else
+ std::cout << "[Macroscopically varying Microstructure]" << std::endl;
+ } //end-macroPhaseLoop
+ // TEST Call python inner-class
+ // std::cout << "Try to access inner python-class: " << std::endl;
+ // Python::Reference innerClass;
+ // globalMicrostructure_.get("lg").toC<Python::Reference>(innerClass); //conversion to C of Python::Reference not implemented!
- // int numberOfMacroPhases_ = parameterSet_.get<int>("numberOfMacroPhases_", 1);
+ // Python::Callable LocalMicrostructureClass = globalMicrostructure_.get(Python::Callable("LocalMicrostructure"));
+ // Python::Callable LocalMicrostructureClass = globalMicrostructure_.get("LocalMicrostructure_1");
+ // LocalMicrostructureClass_[0] = globalMicrostructure_.get("LocalMicrostructure_1");
+ // create instance of inner class:
+ // auto LocalMicrostructure = LocalMicrostructureClass();
- // microProblem_ = std::make_shared<MicroProblem>(microstructureClass_(),parameterSet_, module_);
- // microProblem_ = std::make_shared<MicroProblem>(LocalMicrostructureClass_[0](),parameterSet_, module_);
- // auto LocalMicrostructure = microProblem_->getMicrostructure();
+ // int numberOfMacroPhases_ = parameterSet_.get<int>("numberOfMacroPhases_", 1);
- // access members of inner class:
- // auto test = LocalMicrostructure.get("name");
+ // microProblem_ = std::make_shared<MicroProblem>(microstructureClass_(),parameterSet_, module_);
+ // microProblem_ = std::make_shared<MicroProblem>(LocalMicrostructureClass_[0](),parameterSet_, module_);
- // std::string test;
- // LocalMicrostructure.get("name").toC<std::string>(test);
- // std::cout << "access member of inner class: " << test << std::endl;
+ // auto LocalMicrostructure = microProblem_->getMicrostructure();
-
+ // access members of inner class:
+ // auto test = LocalMicrostructure.get("name");
+ // std::string test;
+ // LocalMicrostructure.get("name").toC<std::string>(test);
+ // std::cout << "access member of inner class: " << test << std::endl;
- // if(parameterSet_.get<bool>("macroscopically_varying_microstructure", 0))
- // {
- // std::cout << "MACROSCOPICALLY VARYING MICROSTRUCTURE is used! " << std::endl;
- // /*
- // * This 'default' microstructureClass_() is just used for an initial setup.
- // */
- // // microProblem_ = std::make_shared<MicroProblem>(microstructureClass_(initialMacroPoint),parameterSet_, module_);
- // // microProblem_ = std::make_shared<MicroProblem>(microstructureClass_(),parameterSet_, module_);
- // }
- // else{
- // std::cout << "CONSTANT MICROSTRUCTURE is used with effective quantities..." << std::endl;
- // // Get Number of MacroPhases
- // // If possible read the effective quantities from ParameterTree
- // if(parameterSet_.get<bool>("read_effectiveQuantities_from_Parset", 1))
- // {
- // std::cout << "READ EFFECTIVE QUANTITIES FROM PARSET..." << std::endl;
- // // module_.get("effectiveQuadraticForm").toC<Dune::FieldMatrix<double,3,3>>(Qhom_[0]);
- // // module_.get("effectivePrestrain").toC<Dune::FieldMatrix<double,2,2>>(Beff_[0]);
+ // if(parameterSet_.get<bool>("macroscopically_varying_microstructure", 0))
+ // {
+ // std::cout << "MACROSCOPICALLY VARYING MICROSTRUCTURE is used! " << std::endl;
+ // /*
+ // * This 'default' microstructureClass_() is just used for an initial setup.
+ // */
+ // // microProblem_ = std::make_shared<MicroProblem>(microstructureClass_(initialMacroPoint),parameterSet_, module_);
+ // // microProblem_ = std::make_shared<MicroProblem>(microstructureClass_(),parameterSet_, module_);
+ // }
+ // else{
+ // std::cout << "CONSTANT MICROSTRUCTURE is used with effective quantities..." << std::endl;
- // std::cout << "Obtain effective quantitites from Microstructure-Class:" << std::endl;
+ // // Get Number of MacroPhases
-
- // // (microProblem_->microstructure_).get("phase" + std::to_string(1) + "_type").toC<std::string>(testString);
+ // // If possible read the effective quantities from ParameterTree
+ // if(parameterSet_.get<bool>("read_effectiveQuantities_from_Parset", 1))
+ // {
- // std::string testString;
- // LocalMicrostructure.get("phase" + std::to_string(1) + "_type").toC<std::string>(testString);
- // std::cout << "Teststring:" << testString << std::endl;
+ // std::cout << "READ EFFECTIVE QUANTITIES FROM PARSET..." << std::endl;
+ // // module_.get("effectiveQuadraticForm").toC<Dune::FieldMatrix<double,3,3>>(Qhom_[0]);
+ // // module_.get("effectivePrestrain").toC<Dune::FieldMatrix<double,2,2>>(Beff_[0]);
- // LocalMicrostructure.get("effectiveQuadraticForm").toC<Dune::FieldMatrix<double,3,3>>(Qhom_[0]);
- // LocalMicrostructure.get("effectivePrestrain").toC<Dune::FieldMatrix<double,2,2>>(Beff_[0]);
+ // std::cout << "Obtain effective quantitites from Microstructure-Class:" << std::endl;
- // }
- // else{
- // std::cout << "Solving the Micro/Cell-Problem (once) to obtain effective quantities ..." << std::endl;
- // // microProblem_ = std::make_shared<MicroProblem>(microstructureClass_(),parameterSet_, module_);
- // // microProblem_.updateMicrostructure(microstructureClass_()); // pass a constant microstructure object.
- // microProblem_->getEffectiveQuantities(Beff_[0],Qhom_[0]);
- // }
+ // // (microProblem_->microstructure_).get("phase" + std::to_string(1) + "_type").toC<std::string>(testString);
+
+
+
+ // std::string testString;
+ // LocalMicrostructure.get("phase" + std::to_string(1) + "_type").toC<std::string>(testString);
+ // std::cout << "Teststring:" << testString << std::endl;
+
+
+ // LocalMicrostructure.get("effectiveQuadraticForm").toC<Dune::FieldMatrix<double,3,3>>(Qhom_[0]);
+ // LocalMicrostructure.get("effectivePrestrain").toC<Dune::FieldMatrix<double,2,2>>(Beff_[0]);
+
+ // }
+ // else{
+ // std::cout << "Solving the Micro/Cell-Problem (once) to obtain effective quantities ..." << std::endl;
+
+ // // microProblem_ = std::make_shared<MicroProblem>(microstructureClass_(),parameterSet_, module_);
+ // // microProblem_.updateMicrostructure(microstructureClass_()); // pass a constant microstructure object.
+ // microProblem_->getEffectiveQuantities(Beff_[0],Qhom_[0]);
+ // }
+
+ // printmatrix(std::cout, Qhom_[0], "Setup effective Quadratic form (Qhom) as ", "--");
+ // printmatrix(std::cout, Beff_[0], "Setup effective prestrain (Beff) as ", "--");
+ // }
- // printmatrix(std::cout, Qhom_[0], "Setup effective Quadratic form (Qhom) as ", "--");
- // printmatrix(std::cout, Beff_[0], "Setup effective prestrain (Beff) as ", "--");
- // }
-
}
void VTKwriteMacroPhaseIndicator() const
{
- std::cout << "VTK write macroPhaseIndicator" << std::endl;
- std::string resultPath = parameterSet_.get("resultPath", "../../outputs");
- // std::string baseName = parameterSet_.get("baseName", "CellProblem-result");
- std::string baseName = "MacroPhaseIndicator";
- int subsamplingRefinement = parameterSet_.get<int>("MacroPhaseSubsamplingRefinement", 0);
-
- Dune::SubsamplingVTKWriter<GridView> MacroPhaseVtkWriter(localFunction_.gridView(), Dune::refinementLevels(subsamplingRefinement));
-
- MacroPhaseVtkWriter.addCellData(
- macroPhaseIndicator_,
- Dune::VTK::FieldInfo("macroPhaseIndicator_", Dune::VTK::FieldInfo::Type::scalar, 1));
-
- MacroPhaseVtkWriter.write(resultPath + "/" + baseName );
- std::cout << "wrote data to file:" + resultPath + "/" + baseName << std::endl;
-
- return;
+ std::cout << "VTK write macroPhaseIndicator" << std::endl;
+ std::string resultPath = parameterSet_.get("resultPath", "../../outputs");
+ // std::string baseName = parameterSet_.get("baseName", "CellProblem-result");
+ std::string baseName = "MacroPhaseIndicator";
+ int subsamplingRefinement = parameterSet_.get<int>("MacroPhaseSubsamplingRefinement", 0);
+
+ Dune::SubsamplingVTKWriter<GridView> MacroPhaseVtkWriter(localFunction_.gridView(), Dune::refinementLevels(subsamplingRefinement));
+
+ MacroPhaseVtkWriter.addCellData(
+ macroPhaseIndicator_,
+ Dune::VTK::FieldInfo("macroPhaseIndicator_", Dune::VTK::FieldInfo::Type::scalar, 1));
+
+ MacroPhaseVtkWriter.write(resultPath + "/" + baseName );
+ std::cout << "wrote data to file:" + resultPath + "/" + baseName << std::endl;
+
+ return;
};
@@ -465,21 +434,21 @@ namespace Dune::GFE
template<class Itype>
void resetEffectiveQuadraticForm(const Dune::FieldMatrix<Itype,3,3>& A, const int macroPhase) const
{
- std::cout << "reset quadratic form ..." << std::endl;
- convertFieldMatrix<RT>(A,Qhom_[macroPhase]);
+ std::cout << "reset quadratic form ..." << std::endl;
+ convertFieldMatrix<RT>(A,Qhom_[macroPhase]);
}
template<class Itype>
void resetEffectivePrestrain(const Dune::FieldMatrix<Itype,2,2>& B, const int macroPhase) const
{
- std::cout << "reset effective prestrain ..." << std::endl;
- convertFieldMatrix<RT>(B,Beff_[macroPhase]);
+ std::cout << "reset effective prestrain ..." << std::endl;
+ convertFieldMatrix<RT>(B,Beff_[macroPhase]);
}
/**
* @brief Apply to effective quadratic form (Qhom).
- *
+ *
* @param Qhom effective elastic moduli
* @param A coefficient vector of first input (coefficient vectors of R_sym^{2x2} matrix in orthonormal basis)
* @param B coefficient vector of second input (coefficient vectors of R_sym^{2x2} matrix in orthonormal basis)
@@ -487,23 +456,29 @@ namespace Dune::GFE
*/
auto applyQhom(const MatrixType& Qhom,const Dune::FieldVector<RT,3>& A, const Dune::FieldVector<RT,3>& B) const
{
- return Qhom[0][0]*A[0]*B[0] + Qhom[0][1]*A[1]*B[0] + Qhom[0][2]*A[2]*B[0]
- + Qhom[1][0]*A[0]*B[1] + Qhom[1][1]*A[1]*B[1] + Qhom[1][2]*A[2]*B[1]
- + Qhom[2][0]*A[0]*B[2] + Qhom[2][1]*A[1]*B[2] + Qhom[2][2]*A[2]*B[2];
+ return Qhom[0][0]*A[0]*B[0] + Qhom[0][1]*A[1]*B[0] + Qhom[0][2]*A[2]*B[0]
+ + Qhom[1][0]*A[0]*B[1] + Qhom[1][1]*A[1]*B[1] + Qhom[1][2]*A[2]*B[1]
+ + Qhom[2][0]*A[0]*B[2] + Qhom[2][1]*A[1]*B[2] + Qhom[2][2]*A[2]*B[2];
+ }
+
+
+
+ /** \brief Assemble the energy for a single element */
+ virtual RT energy (const typename Basis::LocalView& localView,
+ const typename Impl::LocalEnergyTypes<TargetSpace>::CompositeCoefficients& coefficients) const override
+ {
+ DUNE_THROW(NotImplemented, "!");
}
-
/** \brief Assemble the energy for a single element */
- virtual RT energy (const typename Basis::LocalView& localView,
- const std::vector<TargetSpace>& localSolution) const
+ virtual RT energy (const typename Basis::LocalView& localView,
+ const std::vector<TargetSpace>& localConfiguration) const override
{
- RT energy = 0;
-
/**
* @brief TEST reset effective quantities.
- *
+ *
*/
// Dune::FieldMatrix<double,2,2> A = {{2.0, 0.0}, {0.0, 2.0}};
// Dune::FieldMatrix<double,3,3> Q = {{1.0, 2.0, 3.0}, {4.0,5.0,6.0}, {1.0,2.0,3.0}};
@@ -527,7 +502,6 @@ namespace Dune::GFE
// int quadOrder = 1; //too low. bad results.
// int quadOrder = 6; // Same as used/explained by [Rumpf et al. - Two-scale Finite elements approximation of a homogenized model]
-
int quadOrder = parameterSet_.get<int>("macroQuadOrder", 6);
#else
if (localFiniteElement.localBasis().order()==1)
@@ -536,68 +510,79 @@ namespace Dune::GFE
quadOrder = (localFiniteElement.type().isSimplex()) ? (localFiniteElement.localBasis().order() - 1) * 2
: (localFiniteElement.localBasis().order() * gridDim - 1) * 2;
#endif
-
+
const auto element = localView.element();
auto geometry = element.geometry();
auto gridView = localFunction_.gridView();
const auto &indexSet = gridView.indexSet();
- // bind to current element.
- localFunction_.bind(element);
- localForce_.bind(element);
+
+
+ /**
+ bind the underlying Hermite basis to the current element.
+ Note: The DiscreteKirchhoffFunction object stores a vector of global
+ and local basis coefficients that are accessed for evaluation
+ methods (linear combinations of hermite basis function and local coefficients).
+ Therefore the local configuration is passed to the bind method as well since
+ these coefficient vectors need to be updated with the new local configuration
+ previous to evaluation.
+ */
+ localFunction_.bind(element,localConfiguration);
+ // // bind to current element.
+ // localFunction_.bind(element);
+ // localForce_.bind(element);
macroPhaseIndicatorLocalFunction_.bind(element);
- /**
- * @brief We need to update the Coefficients of localFunction_
- * on the current element.
- */
- localFunction_.updateLocalCoefficients(localSolution,element);
+ // /**
+ // * @brief We need to update the Coefficients of localFunction_
+ // * on the current element.
+ // */
+ // localFunction_.updateLocalCoefficients(localConfiguration,element);
if(PRINT_DEBUG)
{
- std::cout << " -------------------------------------------- " << std::endl;
- std::cout << "ELEMENT NUMBER( indexSet.index(element)) ):" << indexSet.index(element) << std::endl;
- std::cout << "geometry.corner(0): " << geometry.corner(0) << std::endl;
- std::cout << "geometry.corner(1)): " << geometry.corner(1) << std::endl;
- std::cout << "geometry.corner(2): " << geometry.corner(2) << std::endl;
+ std::cout << " -------------------------------------------- " << std::endl;
+ std::cout << "ELEMENT NUMBER( indexSet.index(element)) ):" << indexSet.index(element) << std::endl;
+ std::cout << "geometry.corner(0): " << geometry.corner(0) << std::endl;
+ std::cout << "geometry.corner(1)): " << geometry.corner(1) << std::endl;
+ std::cout << "geometry.corner(2): " << geometry.corner(2) << std::endl;
}
/**
- * @brief Get Coefficients of the discrete Gradient
- *
+ * @brief Get Coefficients of the discrete Gradient
+ *
* The discrete Gradient is a special linear combination represented in a [P2]^2 - (Lagrange) space
* The coefficients of this linear combination correspond to certain linear combinations of the Gradients of localfunction_ .
* The coefficients are stored in the form [Basisfunctions x components x gridDim]
* in a BlockVector<FieldMatrix<RT, 3, gridDim>> .
*/
- BlockVector<FieldMatrix<RT, 3, gridDim>> discreteJacobianCoefficients;
- discreteGradientCoefficients(discreteJacobianCoefficients,lagrangeLFE_,localFunction_,element);
-
-
-
-
+ // BlockVector<FieldMatrix<RT, 3, gridDim> > discreteJacobianCoefficients;
+ // discreteGradientCoefficients(discreteJacobianCoefficients,lagrangeLFE_,localFunction_,element);
+
+
+
+
/**
* @brief Compute The energy contribution of Qhom(II - Beff).
- * This is called 'harmonicEnergy' for historical reasons:
* without prestrain and if Qhom=|.|^2 (squared Frobenius-Norm),
* This is just the harmonic energy of the deformation Gradient.
- *
- *
- * Mixed version using the binomal formula (a-b)^2 = a^2 - 2ab + b^2
- * for | II - Beff |^2 and discretize every term individually.
+ *
+ *
+ * Mixed version using the binomal formula (a-b)^2 = a^2 - 2ab + b^2
+ * for | II - Beff |^2 and discretize every term individually.
*/
- RT harmonicEnergy = 0;
+ RT bendingEnergy = 0;
// Gauss-Legendre-Quadrature (default):
const auto &quadRule = QuadratureRules<double, gridDim>::rule(lagrangeLFE_.type(), quadOrder);
- //TEST Gauß-Jacobi-Quadrature formula:
+ //TEST Gauß-Jacobi-Quadrature formula:
// const auto &quadRule = QuadratureRules<double, gridDim>::rule(lagrangeLFE_.type(), quadOrder, QuadratureType::GaussJacobi_1_0);
@@ -620,7 +605,7 @@ namespace Dune::GFE
// exit(0);
- // Determine macro phase and type
+ // Determine macro phase and type
int currentPhase = macroPhaseIndicatorLocalFunction_(quadPos);
// bool constantMicrostructure = true;
@@ -630,18 +615,18 @@ namespace Dune::GFE
if(!constantMicrostructure)
{
- std::cout << "Compute effective quantities at current quadrature point: " << element.geometry().global(quadPos) << std::endl;
+ std::cout << "Compute effective quantities at current quadrature point: " << element.geometry().global(quadPos) << std::endl;
+
-
// microProblem_.insert({(currentPhase-1),std::make_shared<MicroProblem>(LocalMicrostructureClass_[(currentPhase-1)](),parameterSet_, module_)});
// (microProblem_[(currentPhase-1)])->getEffectiveQuantities(Beff_[(currentPhase-1)],Qhom_[(currentPhase-1)]); //this doesnt work in const-method?!
- auto currentMicroProblem = std::make_shared<MicroProblem>(LocalMicrostructureClass_[(currentPhase-1)](),parameterSet_, module_);
+ auto currentMicroProblem = std::make_shared<MicroProblem>(LocalMicrostructureClass_[(currentPhase-1)](element.geometry().global(quadPos)),parameterSet_, module_);
currentMicroProblem->getEffectiveQuantities(Beff_[(currentPhase-1)],Qhom_[(currentPhase-1)]);
// auto microProblem = microProblem_.find(currentPhase);
- // ((*microProblem).second)->updateMicrostructure(LocalMicrostructureClass_[(currentPhase-1)](element.geometry().global(quadPos)));
+ // ((*microProblem).second)->updateMicrostructure(LocalMicrostructureClass_[(currentPhase-1)](element.geometry().global(quadPos)));
// ((*microProblem).second)->getEffectiveQuantities(Beff_[(currentPhase-1)],Qhom_[(currentPhase-1)]);
}
@@ -658,41 +643,41 @@ namespace Dune::GFE
// //USAGE:
- // //TODO
+ // //TODO
// //create instance of globalMicrostructure_Class_
// // Python::Reference globalMicrostructure_ = globalMicrostructure_Class_();
// // //get LocalMicrostructureClass
// // Python::Callable LocalMicrostructureClass = globalMicrostructure_.get("LocalMicrostructure_1");
-
+
// auto microProblem = microProblem_.find(0);
- // ((*microProblem).second)->updateMicrostructure(LocalMicrostructureClass_[0](element.geometry().global(quadPos)));
+ // ((*microProblem).second)->updateMicrostructure(LocalMicrostructureClass_[0](element.geometry().global(quadPos)));
// ((*microProblem).second)->getEffectiveQuantities(Beff_[0],Qhom_[0]);
- // // (*microProblem_[0])->updateMicrostructure(LocalMicrostructureClass_[0](element.geometry().global(quadPos)));
+ // // (*microProblem_[0])->updateMicrostructure(LocalMicrostructureClass_[0](element.geometry().global(quadPos)));
// // (*microProblem_[0])->getEffectiveQuantities(Beff_[0],Qhom_[0]);
-
+
// //easier to simply create new microProblem object ...
- // // microProblem_->updateMicrostructure(LocalMicrostructureClass_[0](element.geometry().global(quadPos)));
+ // // microProblem_->updateMicrostructure(LocalMicrostructureClass_[0](element.geometry().global(quadPos)));
// // microProblem_->getEffectiveQuantities(Beff_[0],Qhom_[0]);
- // // microProblem_->updateMicrostructure(microstructureClass_(element.geometry().global(quadPos)));
+ // // microProblem_->updateMicrostructure(microstructureClass_(element.geometry().global(quadPos)));
// // microProblem_->getEffectiveQuantities(Beff_,Qhom_,count);
// // count++;
-
+
// /**
- // * @brief TODO ..
- // *
+ // * @brief TODO ..
+ // *
// * 1.information from each quadrature point has to enter.
// * 2. Caching of Effective Quantities
- // *
+ // *
// */
// // exit(0);
@@ -705,30 +690,35 @@ namespace Dune::GFE
- //Get values of the P2-Basis functions on current quadrature point
- std::vector<FieldVector<double,1>> basisValues;
- lagrangeLFE_.localBasis().evaluateFunction(quadPos, basisValues);
+ // //Get values of the P2-Basis functions on current quadrature point
+ // std::vector<FieldVector<double,1> > basisValues;
+ // lagrangeLFE_.localBasis().evaluateFunction(quadPos, basisValues);
- const auto geometryJacobianInverse = geometry.jacobianInverse(quadPos);
- std::vector<FieldMatrix<double,1,gridDim> > gradients;
- lagrangeLFE_.localBasis().evaluateJacobian(quadPos, gradients);
+ // const auto geometryJacobianInverse = geometry.jacobianInverse(quadPos);
+ // std::vector<FieldMatrix<double,1,gridDim> > gradients;
+ // lagrangeLFE_.localBasis().evaluateJacobian(quadPos, gradients);
- for (size_t i=0; i< gradients.size(); i++)
- gradients[i] = gradients[i] * geometryJacobianInverse;
+ // for (size_t i=0; i< gradients.size(); i++)
+ // gradients[i] = gradients[i] * geometryJacobianInverse;
- Tensor3<RT,3,gridDim,gridDim> discreteHessian(0);
- FieldMatrix<RT, 3, gridDim> discreteGradient(0);
+ // Tensor3<RT,3,gridDim,gridDim> discreteHessian(0);
+ // FieldMatrix<RT, 3, gridDim> discreteGradient(0);
+
+ // for (int k=0; k<3; k++)
+ // for (int l=0; l<gridDim; l++)
+ // for (std::size_t i=0; i<lagrangeLFE_.size(); i++)
+ // {
+ // discreteGradient[k][l] += discreteJacobianCoefficients[i][k][l]*basisValues[i];
+ // discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0][0];
+ // discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][0][1];
+ // }
+
+ // Evaluate discrete Gradient and Hessian.
+ auto discreteGradient= localFunction_.evaluateDiscreteGradient(quadPoint.position());
+ auto discreteHessian= localFunction_.evaluateDiscreteHessian(quadPoint.position());
+
- for (int k=0; k<3; k++)
- for (int l=0; l<gridDim; l++)
- for (std::size_t i=0; i<lagrangeLFE_.size(); i++)
- {
- discreteGradient[k][l] += discreteJacobianCoefficients[i][k][l]*basisValues[i];
- discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0][0];
- discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][0][1];
- }
-
if(PRINT_DEBUG)
{
/**
@@ -739,27 +729,27 @@ namespace Dune::GFE
FieldMatrix<RT, gridDim, gridDim> discreteHessian_slice3(0);
for (int i=0; i<gridDim; i++)
- for (int l=0; l<gridDim; l++)
- {
+ for (int l=0; l<gridDim; l++)
+ {
discreteHessian_slice1[i][l] = discreteHessian[0][i][l];
discreteHessian_slice2[i][l] = discreteHessian[1][i][l];
discreteHessian_slice3[i][l] = discreteHessian[2][i][l];
- }
- printmatrix(std::cout, discreteHessian_slice1, "discreteHessian_slice1: ", "--");
- printmatrix(std::cout, discreteHessian_slice2, "discreteHessian_slice2: ", "--");
- printmatrix(std::cout, discreteHessian_slice3, "discreteHessian_slice3: ", "--");
- printmatrix(std::cout, sym(discreteHessian_slice1), "SYM discreteHessian_slice1: ", "--");
- printmatrix(std::cout, sym(discreteHessian_slice2), "SYM discreteHessian_slice2: ", "--");
- printmatrix(std::cout, sym(discreteHessian_slice3), "SYM discreteHessian_slice3: ", "--");
+ }
+ // printmatrix(std::cout, discreteHessian_slice1, "discreteHessian_slice1: ", "--");
+ // printmatrix(std::cout, discreteHessian_slice2, "discreteHessian_slice2: ", "--");
+ // printmatrix(std::cout, discreteHessian_slice3, "discreteHessian_slice3: ", "--");
+ // printmatrix(std::cout, sym(discreteHessian_slice1), "SYM discreteHessian_slice1: ", "--");
+ // printmatrix(std::cout, sym(discreteHessian_slice2), "SYM discreteHessian_slice2: ", "--");
+ // printmatrix(std::cout, sym(discreteHessian_slice3), "SYM discreteHessian_slice3: ", "--");
}
/**
- * @brief Compute the normal vector of the surface parametrized by the
- * discrete deformation. This is given by the
+ * @brief Compute the normal vector of the surface parametrized by the
+ * discrete deformation. This is given by the
* cross product of partial derivatives
- */
+ */
FieldVector<RT,3> partialX = {discreteGradient[0][0], discreteGradient[1][0], discreteGradient[2][0]};
FieldVector<RT,3> partialY = {discreteGradient[0][1], discreteGradient[1][1], discreteGradient[2][1]};
// Normalize if requested
@@ -780,16 +770,26 @@ namespace Dune::GFE
* @brief Compute the second fundamental form of the surface parametrized by the
* discrete deformation.
* We have to multiply by (-1.0) to get the right sign/normal/orientation.
- */
+ */
FieldMatrix<RT,gridDim,gridDim> secondFF(0);
for(size_t m=0; m<2; m++)
- for(size_t n=0; n<2; n++)
- for(size_t k=0; k<3; k++)
- secondFF[m][n] += surfaceNormal[k]*discreteHessian[k][n][m];
+ for(size_t n=0; n<2; n++)
+ for(size_t k=0; k<3; k++)
+ secondFF[m][n] += surfaceNormal[k]*discreteHessian[k][n][m];
// To get the right sign:
secondFF *= -1.0;
+ if(PRINT_DEBUG)
+ {
+ // Check Symmetry of discrete second fundamental form
+ if((secondFF - sym(secondFF)).frobenius_norm() > 1e-8)
+ {
+ std::cout << "frobenius-norm of skew-symmetric part of discrete second fundamental form :" << (secondFF - sym(secondFF)).frobenius_norm() << std::endl;
+ printmatrix(std::cout, secondFF, "secondFF: ", "--");
+ }
+
+ }
/**
* @brief Compute the first term: Qhom(II)
@@ -799,17 +799,15 @@ namespace Dune::GFE
RT term1 = 0.0;
- std::vector<FieldVector<RT,3>> X(3);
+ std::vector<FieldVector<RT,3> > X(3);
tensorToSymCoefficients(discreteHessian, X);
- // apply Qhom to each slice of the Hessian...
+ // apply Qhom to each slice of the Hessian...
for(int k=0; k<3; k++)
- term1 += applyQhom(Qhom_[currentPhase-1],X[k], X[k]);
-
-
- term1 *= weight;
+ term1 += applyQhom(Qhom_[currentPhase-1],X[k], X[k]);
+ term1 *= weight;
/**
@@ -826,50 +824,25 @@ namespace Dune::GFE
RT term3 = weight * applyQhom(Qhom_[currentPhase-1],BeffCoefficients,BeffCoefficients);
- harmonicEnergy += term1 - term2 + term3;
- // std::cout << "harmonicEnergy: " << harmonicEnergy << std::endl;
-
+ bendingEnergy += term1 - term2 + term3;
+ // std::cout << "bendingEnergy: " << bendingEnergy << std::endl;
+
/**
* @brief Test: Discretize II-Beff directly.
* This time with higher quad orders.
* * Does not seem to produce good results..
- *
+ *
*/
// RT newTerm = weight* applyQhom(Qhom_[currentPhase-1],(secondFFCoefficients - BeffCoefficients),(secondFFCoefficients - BeffCoefficients));
- // harmonicEnergy += newTerm;
+ // bendingEnergy += newTerm;
}
-
-
- /**
- * @brief Compute contribution of the force Term
- *
- * Integrate the scalar product of the force 'f'
- * with the local deformation function 'localFunction_'
- * over the current element.
- */
- RT forceTermEnergy = 0;
-
- if (parameterSet_.get<bool>("assemble_force_term", 1))
- {
- for (auto&& quadPoint : quadRule)
- {
- auto deformationValue = localFunction_.evaluate(quadPoint.position());
- auto forceValue = localForce_(quadPoint.position());
- auto weight = quadPoint.weight() * element.geometry().integrationElement(quadPoint.position());
- forceTermEnergy += deformationValue.globalCoordinates() * forceValue * weight;
- }
- }
-
- /**
- * @brief Return total energy.
- */
- return harmonicEnergy - forceTermEnergy;
+ return bendingEnergy;
}
};
} // namespace Dune::GFE
-#endif
\ No newline at end of file
+#endif
diff --git a/dune/microstructure/energies/discretekirchhoffbendingenergyprestrained_debug.hh b/dune/microstructure/energies/discretekirchhoffbendingenergyprestrained_debug.hh
index c6c5091307d64b0c7902b242a0732bdae9dfd733..2d2994da6edfa804596e579972e7294c53fd9d42 100644
--- a/dune/microstructure/energies/discretekirchhoffbendingenergyprestrained_debug.hh
+++ b/dune/microstructure/energies/discretekirchhoffbendingenergyprestrained_debug.hh
@@ -11,18 +11,18 @@
#include <dune/localfunctions/lagrange/lagrangesimplex.hh>
#include <cmath>
-/**
- * \brief Assemble the discrete Kirchhoff bending energy for a single element.
- *
- * The Kirchhoff bending energy consists of two parts:
- *
- * 1. The energy of Qhom(II - Beff) where II is the second fundamental form of the surface parametrized by the deformation function
- * and Beff is a (given) effective prestrain tensor.
- *
+/**
+ * \brief Assemble the discrete Kirchhoff bending energy for a single element.
+ *
+ * The Kirchhoff bending energy consists of two parts:
+ *
+ * 1. The energy of Qhom(II - Beff) where II is the second fundamental form of the surface parametrized by the deformation function
+ * and Beff is a (given) effective prestrain tensor.
+ *
* This contribution is split intro three parts which corresponds to the binomial formula (a+b)^2 = a^2 + 2ab + b^2
* each term is discretized separately.
- *
- * 2. An integral over the scalar product of a forcing term and the discrete deformation
+ *
+ * 2. An integral over the scalar product of a forcing term and the discrete deformation
* (i.e. the evaluation of localFunction_ ).
*/
namespace Dune::GFE
@@ -45,17 +45,17 @@ namespace Dune::GFE
public:
DiscreteKirchhoffBendingEnergyPrestrained(LocalDiscreteKirchhoffFunction &localFunction,
- LocalForce &localForce,
- const Dune::ParameterTree& parameterSet)
- : localFunction_(localFunction),
- localForce_(localForce),
- parameterSet_(parameterSet)
+ LocalForce &localForce,
+ const Dune::ParameterTree& parameterSet)
+ : localFunction_(localFunction),
+ localForce_(localForce),
+ parameterSet_(parameterSet)
{}
/** \brief Assemble the energy for a single element */
- virtual RT energy (const typename Basis::LocalView& localView,
- const std::vector<TargetSpace>& localSolution) const
+ virtual RT energy (const typename Basis::LocalView& localView,
+ const std::vector<TargetSpace>& localSolution) const
{
RT energy = 0;
@@ -70,27 +70,27 @@ namespace Dune::GFE
// MatrixType Qhom = quadraticForm_;
- /**
+ /**
* @brief Get effective prestrain Tensor
*/
- Dune::FieldVector<RT,3> Beffvec = parameterSet_.get<Dune::FieldVector<RT,3>>("effectivePrestrain", {0.0, 0.0, 0.0});
+ Dune::FieldVector<RT,3> Beffvec = parameterSet_.get<Dune::FieldVector<RT,3> >("effectivePrestrain", {0.0, 0.0, 0.0});
Dune::FieldMatrix<RT,2,2> Beff = {{Beffvec[0], Beffvec[2]}, {Beffvec[2], Beffvec[1]} };
// printmatrix(std::cout, Beff, "effective prestrain (Beff): ", "--");
/**
* @brief Get effective quadratic form Qhom
- *
+ *
* input-vector: [q_1,q_2,q_3,q_12,q_13,q_23]
* is assembled into a matrix where the off-diagonal entries are divided by 2 (compare with definition in the paper)
* ( q_1 , 0.5*q_12 , 0.5*q_13 )
* Q = ( 0.5*q_12 , q_2 , 0.5*q_23 )
* ( 0.5*q_13 , 0.5*q_23 , q_3 )
*/
- Dune::FieldVector<RT,6> Qhomvec = parameterSet_.get<Dune::FieldVector<RT,6>>("effectiveQuadraticForm", {1.0, 1.0, 1.0, 0.0, 0.0, 0.0});
- MatrixType Qhom = {{Qhomvec[0] , 0.5*Qhomvec[3], 0.5*Qhomvec[4]},
- {0.5*Qhomvec[3], Qhomvec[1], 0.5*Qhomvec[5]},
- {0.5*Qhomvec[4], 0.5*Qhomvec[5], Qhomvec[2]}};
+ Dune::FieldVector<RT,6> Qhomvec = parameterSet_.get<Dune::FieldVector<RT,6> >("effectiveQuadraticForm", {1.0, 1.0, 1.0, 0.0, 0.0, 0.0});
+ MatrixType Qhom = {{Qhomvec[0] , 0.5*Qhomvec[3], 0.5*Qhomvec[4]},
+ {0.5*Qhomvec[3], Qhomvec[1], 0.5*Qhomvec[5]},
+ {0.5*Qhomvec[4], 0.5*Qhomvec[5], Qhomvec[2]}};
// printmatrix(std::cout, Qhom, "effective quadratic form (Qhom): ", "--");
@@ -110,7 +110,7 @@ namespace Dune::GFE
quadOrder = (localFiniteElement.type().isSimplex()) ? (localFiniteElement.localBasis().order() - 1) * 2
: (localFiniteElement.localBasis().order() * gridDim - 1) * 2;
#endif
-
+
const auto element = localView.element();
auto geometry = element.geometry();
auto gridView = localFunction_.gridView();
@@ -131,40 +131,40 @@ namespace Dune::GFE
// std::cout <<"ELEMENT NUMBER( indexSet.index(element)) ):" << indexSet.index(element) << std::endl;
if(PRINT_DEBUG)
{
- std::cout << "geometry.corner(0): " << geometry.corner(0) << std::endl;
- std::cout << "geometry.corner(1)): " << geometry.corner(1) << std::endl;
- std::cout << "geometry.corner(2): " << geometry.corner(2) << std::endl;
+ std::cout << "geometry.corner(0): " << geometry.corner(0) << std::endl;
+ std::cout << "geometry.corner(1)): " << geometry.corner(1) << std::endl;
+ std::cout << "geometry.corner(2): " << geometry.corner(2) << std::endl;
}
/**
- * @brief Get Coefficients of the discrete Jacobian
- *
+ * @brief Get Coefficients of the discrete Jacobian
+ *
* The discrete Jacobian is a special linear combination represented in a [P2]^2 - (Lagrange) space
* The coefficients of this linear combination correspond to certain linear combinations of the Jacobians of localfunction_ .
* The coefficients are stored in the form [Basisfunctions x components x gridDim]
* in a BlockVector<FieldMatrix<RT, 3, gridDim>> .
*/
- BlockVector<FieldMatrix<RT, 3, gridDim>> discreteJacobianCoefficients;
+ BlockVector<FieldMatrix<RT, 3, gridDim> > discreteJacobianCoefficients;
discreteGradientCoefficients(discreteJacobianCoefficients,lagrangeLFE_,localFunction_,element);
-
-
-
-
+
+
+
+
/**
* @brief Compute harmonic energy contribution:
*/
RT harmonicEnergy = 0;
-
+
//VERSION - 1
#if 0
/**
- * @brief Setup Quadrature rule.
- *
+ * @brief Setup Quadrature rule.
+ *
*/
// Gauss-Quadrature:
const auto &quadRule = QuadratureRules<double, gridDim>::rule(lagrangeLFE_.type(), quadOrder);
@@ -175,7 +175,7 @@ namespace Dune::GFE
for (auto&& quadPoint : quadRule)
{
//Get values of the P2-Basis functions on current quadrature point
- std::vector<FieldVector<double,1>> basisValues;
+ std::vector<FieldVector<double,1> > basisValues;
lagrangeLFE_.localBasis().evaluateFunction(quadPoint.position(), basisValues);
// if(PRINT_DEBUG)
@@ -186,14 +186,14 @@ namespace Dune::GFE
// }
// Get Jacobians of the P2-Basis functions on current quadrature point
- std::vector<FieldMatrix<double, 1, gridDim>> referenceGradients;
+ std::vector<FieldMatrix<double, 1, gridDim> > referenceGradients;
lagrangeLFE_.localBasis().evaluateJacobian(quadPoint.position(), referenceGradients);
const auto jacobian = geometry.jacobianInverseTransposed(quadPoint.position());
const auto integrationElement = geometry.integrationElement(quadPoint.position());
// printmatrix(std::cout, jacobian , "jacobian : ", "--");
- std::vector<FieldVector<RT, gridDim>> gradients(referenceGradients.size());
+ std::vector<FieldVector<RT, gridDim> > gradients(referenceGradients.size());
for (size_t i = 0; i<gradients.size(); i++)
jacobian.mv(referenceGradients[i][0], gradients[i]);
@@ -203,30 +203,30 @@ namespace Dune::GFE
// lagrangeLFE_.localBasis().evaluateJacobian(quadPoint.position(), gradients);
- Tensor3<RT,3,2,2> discreteHessian(0);
+ Tensor3<RT,3,2,2> discreteHessian(0);
FieldMatrix<RT, 3, gridDim> discreteGradient(0);
- /**
- * @brief Compute the discrete Hessian and discrete Gradient as a linear combination of
- * function and gradient evaluations of the P2-basis functions with the coefficients given
- * by 'discreteJacobianCoefficients'.
- * Since the deformation function has k=3 components we get
- * - discreteGradient : 3x2 matrix
- * - discreteHessian: 3x2x2 tensor
- */
+ /**
+ * @brief Compute the discrete Hessian and discrete Gradient as a linear combination of
+ * function and gradient evaluations of the P2-basis functions with the coefficients given
+ * by 'discreteJacobianCoefficients'.
+ * Since the deformation function has k=3 components we get
+ * - discreteGradient : 3x2 matrix
+ * - discreteHessian: 3x2x2 tensor
+ */
for (int k=0; k<3; k++)
- for (int l=0; l<gridDim; l++)
- for(std::size_t i=0; i<lagrangeLFE_.size(); i++)
- {
- // Compute discrete gradient
- discreteGradient[k][l] += discreteJacobianCoefficients[i][k][l]*basisValues[i];
- // Compute discrete Hessian
- discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0];
- discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][1];
- // discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0][0];
- // discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][0][1];
- }
+ for (int l=0; l<gridDim; l++)
+ for(std::size_t i=0; i<lagrangeLFE_.size(); i++)
+ {
+ // Compute discrete gradient
+ discreteGradient[k][l] += discreteJacobianCoefficients[i][k][l]*basisValues[i];
+ // Compute discrete Hessian
+ discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0];
+ discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][1];
+ // discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0][0];
+ // discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][0][1];
+ }
// DerivativeType whJacobianValue = localFunction_.evaluateDerivative(quadPoint.position());
@@ -239,7 +239,7 @@ namespace Dune::GFE
//
-
+
@@ -262,17 +262,17 @@ namespace Dune::GFE
// if(PRINT_DEBUG)
// {
- /**
- * @brief print the (two) different 3x2 slices of the discrete Hessian
- */
+ /**
+ * @brief print the (two) different 3x2 slices of the discrete Hessian
+ */
FieldMatrix<RT, 3, 2> discreteHessian_slice1(0);
FieldMatrix<RT, 3, 2> discreteHessian_slice2(0);
for (int k=0; k<3; k++)
- for (int l=0; l<gridDim; l++)
- {
+ for (int l=0; l<gridDim; l++)
+ {
discreteHessian_slice1[k][l] = discreteHessian[k][l][0];
discreteHessian_slice2[k][l] = discreteHessian[k][l][1];
- }
+ }
// printmatrix(std::cout, discreteHessian_slice1, "discreteHessian_slice1: ", "--");
// printmatrix(std::cout, discreteHessian_slice2, "discreteHessian_slice2: ", "--");
// }
@@ -287,7 +287,7 @@ namespace Dune::GFE
/**
- * @brief Compute the surface normal given by the cross-product of the two different partial derivatives
+ * @brief Compute the surface normal given by the cross-product of the two different partial derivatives
* of the discrete gradient.
* This is needed to compute the second fundamental form.
*/
@@ -299,7 +299,7 @@ namespace Dune::GFE
auto normY = partialY.two_norm();
/**
- * @brief Test: normalize
+ * @brief Test: normalize
*/
// partialX /= normX;
// partialY /= normY;
@@ -311,9 +311,9 @@ namespace Dune::GFE
// std::cout << "surfaceNormal.two_norm() : " << surfaceNormal.two_norm() << std::endl;
// surfaceNormal *= -1.0;
-
+
/**
- * @brief Test: normalize
+ * @brief Test: normalize
*/
// auto norm = surfaceNormal.two_norm();
// surfaceNormal /= norm;
@@ -326,24 +326,24 @@ namespace Dune::GFE
FieldMatrix<RT,2,2> secondFF(0);
for(size_t m=0; m<2; m++)
- for(size_t n=0; n<2; n++)
- for(size_t k=0; k<3; k++)
- {
- secondFF[m][n] += surfaceNormal[k]*discreteHessian[k][n][m];
-
-
- //Test: transposed version
- // secondFF[m][n] += discreteHessian[k][m][n]*surfaceNormal[k];
- // secondFF[0][0] += surfaceNormal[k]*discreteHessian[k][0][0];
- // secondFF[0][1] += surfaceNormal[k]*discreteHessian[k][1][0];
- // secondFF[1][0] += surfaceNormal[k]*discreteHessian[k][0][1];
- // secondFF[1][1] += surfaceNormal[k]*discreteHessian[k][1][1];
- }
+ for(size_t n=0; n<2; n++)
+ for(size_t k=0; k<3; k++)
+ {
+ secondFF[m][n] += surfaceNormal[k]*discreteHessian[k][n][m];
+
+
+ //Test: transposed version
+ // secondFF[m][n] += discreteHessian[k][m][n]*surfaceNormal[k];
+ // secondFF[0][0] += surfaceNormal[k]*discreteHessian[k][0][0];
+ // secondFF[0][1] += surfaceNormal[k]*discreteHessian[k][1][0];
+ // secondFF[1][0] += surfaceNormal[k]*discreteHessian[k][0][1];
+ // secondFF[1][1] += surfaceNormal[k]*discreteHessian[k][1][1];
+ }
// printmatrix(std::cout, secondFF , "secondFF: ", "--");
/**
- * @brief Check orthogonality between discrete Hessian and discrete gradient
+ * @brief Check orthogonality between discrete Hessian and discrete gradient
* at nodes.
*/
// std::cout << "---- ORTHOGONALITY CHECK 1: ----" << std::endl;
@@ -402,7 +402,7 @@ namespace Dune::GFE
/**
* @brief Subtract the effective prestrain
*/
- auto G = secondFF - Beff;
+ auto G = secondFF - Beff;
// auto symG = 0.5*(G.transposed() + G);
@@ -415,7 +415,7 @@ namespace Dune::GFE
auto weight = quadPoint.weight() * element.geometry().integrationElement(quadPoint.position());
/**
- * @brief TEST: Check the difference between the squared Frobenius norm of the
+ * @brief TEST: Check the difference between the squared Frobenius norm of the
* second fundamental form and discrete Hessian.
* (Note that for isometries, these should be equal.)
*/
@@ -441,7 +441,7 @@ namespace Dune::GFE
// {
// term2 += weight * secondFF[i][j] * Beff[i][j];
// }
- // auto term3 = 0.5 * weight * Beff.frobenius_norm2();
+ // auto term3 = 0.5 * weight * Beff.frobenius_norm2();
// std::cout << "term1-term2+term3 :" << term1-term2+term3 << std::endl;
// }
@@ -496,17 +496,17 @@ namespace Dune::GFE
// std::cout << "------ print P2-Basis evaluation -----" << std::endl;
// for(std::size_t i=0; i<lagrangeLFE_.size(); i++)
// {
- // std::cout << i << "-th P2-basis function: " << std::endl;
+ // std::cout << i << "-th P2-basis function: " << std::endl;
// printvector(std::cout, basisValues_edge1[i] , "basisValues_edge1[i] ", "--");
// }
// for(std::size_t i=0; i<lagrangeLFE_.size(); i++)
// {
- // std::cout << i << "-th P2-basis function: " << std::endl;
+ // std::cout << i << "-th P2-basis function: " << std::endl;
// printvector(std::cout, basisValues_edge2[i] , "basisValues_edge2[i] ", "--");
// }
// for(std::size_t i=0; i<lagrangeLFE_.size(); i++)
// {
- // std::cout << i << "-th P2-basis function: " << std::endl;
+ // std::cout << i << "-th P2-basis function: " << std::endl;
// printvector(std::cout, basisValues_edge3[i] , "basisValues_edge3[i] ", "--");
// }
@@ -538,7 +538,7 @@ namespace Dune::GFE
// // std::cout << "cos(geometry.global({0.5,0.5})[0]): " << cos(geometry.global({0.5,0.5})[0]) << std::endl;
// // std::cout << "sin(geometry.global({0.0,0.5})[0]): " << sin(geometry.global({0.0,0.5})[0]) << std::endl;
// // std::cout << "cos(geometry.global({0.0,0.5})[0]): " << cos(geometry.global({0.0,0.5})[0]) << std::endl;
- // // TEST VERTICES
+ // // TEST VERTICES
// // std::cout << "sin(geometry.global({0.0,0.0})[0]): " << sin(geometry.global({0.0,0.0})[0]) << std::endl;
// // std::cout << "cos(geometry.global({0.0,0.0})[0]): " << cos(geometry.global({0.0,0.0})[0]) << std::endl;
// // std::cout << "sin(geometry.global({1.0,0.0})[0]): " << sin(geometry.global({1.0,0.0})[0]) << std::endl;
@@ -550,10 +550,10 @@ namespace Dune::GFE
// exit(0);
- // #if 0
+ // #if 0
/**
- * @brief VERSION - 2 : Mixed version using the binomal formula (a-b)^2 = a^2 - 2ab + b^2
- * for | II - Beff |^2 and discretize every term individually.
+ * @brief VERSION - 2 : Mixed version using the binomal formula (a-b)^2 = a^2 - 2ab + b^2
+ * for | II - Beff |^2 and discretize every term individually.
*/
// Gauss-Quadrature:
const auto &quadRule = QuadratureRules<double, gridDim>::rule(lagrangeLFE_.type(), quadOrder);
@@ -565,49 +565,49 @@ namespace Dune::GFE
{
//Get values of the P2-Basis functions on current quadrature point
- std::vector<FieldVector<double,1>> basisValues;
+ std::vector<FieldVector<double,1> > basisValues;
lagrangeLFE_.localBasis().evaluateFunction(quadPoint.position(), basisValues);
// Get Jacobians of the P2-Basis functions on current quadrature point
- std::vector<FieldMatrix<double, 1, gridDim>> referenceGradients;
+ std::vector<FieldMatrix<double, 1, gridDim> > referenceGradients;
lagrangeLFE_.localBasis().evaluateJacobian(quadPoint.position(), referenceGradients);
const auto jacobian = geometry.jacobianInverseTransposed(quadPoint.position());
const auto integrationElement = geometry.integrationElement(quadPoint.position());
- std::vector<FieldVector<RT, gridDim>> gradients(referenceGradients.size());
+ std::vector<FieldVector<RT, gridDim> > gradients(referenceGradients.size());
for (size_t i = 0; i<gradients.size(); i++)
jacobian.mv(referenceGradients[i][0], gradients[i]);
- Tensor3<RT,3,2,2> discreteHessian(0);
+ Tensor3<RT,3,2,2> discreteHessian(0);
FieldMatrix<RT, 3, gridDim> discreteGradient(0);
for (int k=0; k<3; k++)
- for (int l=0; l<gridDim; l++)
- for(std::size_t i=0; i<lagrangeLFE_.size(); i++)
- {
- discreteGradient[k][l] += discreteJacobianCoefficients[i][k][l]*basisValues[i];
- discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0];
- discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][1];
-
- }
-
+ for (int l=0; l<gridDim; l++)
+ for(std::size_t i=0; i<lagrangeLFE_.size(); i++)
+ {
+ discreteGradient[k][l] += discreteJacobianCoefficients[i][k][l]*basisValues[i];
+ discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0];
+ discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][1];
+
+ }
+
/**
- * @brief print the (three) 2x2 slices of the discrete Hessian (check for symmetry)
- */
+ * @brief print the (three) 2x2 slices of the discrete Hessian (check for symmetry)
+ */
FieldMatrix<RT, 2, 2> discreteHessian_slice1(0);
FieldMatrix<RT, 2, 2> discreteHessian_slice2(0);
FieldMatrix<RT, 2, 2> discreteHessian_slice3(0);
for (int i=0; i<2; i++)
- for (int l=0; l<gridDim; l++)
- {
+ for (int l=0; l<gridDim; l++)
+ {
discreteHessian_slice1[i][l] = discreteHessian[0][i][l];
discreteHessian_slice2[i][l] = discreteHessian[1][i][l];
discreteHessian_slice3[i][l] = discreteHessian[2][i][l];
- }
+ }
// printmatrix(std::cout, discreteHessian_slice1, "discreteHessian_slice1: ", "--");
// printmatrix(std::cout, discreteHessian_slice2, "discreteHessian_slice2: ", "--");
@@ -644,20 +644,20 @@ namespace Dune::GFE
FieldMatrix<RT,2,2> secondFF(0);
for(size_t m=0; m<2; m++)
- for(size_t n=0; n<2; n++)
- for(size_t k=0; k<3; k++)
- {
- secondFF[m][n] += surfaceNormal[k]*discreteHessian[k][n][m];
- }
+ for(size_t n=0; n<2; n++)
+ for(size_t k=0; k<3; k++)
+ {
+ secondFF[m][n] += surfaceNormal[k]*discreteHessian[k][n][m];
+ }
// To get the right sign:
secondFF = -1.0*secondFF;
- // substract effective prestrain
- // G = G + Beff;
+ // substract effective prestrain
+ // G = G + Beff;
- //Take symmetric part?
+ //Take symmetric part?
// auto symG = 0.5*(G.transposed() + G);
@@ -698,9 +698,9 @@ namespace Dune::GFE
for(int k=0; k<3; k++)
{
// term1 += Qhom[0][0]*pow((2.0*discreteHessian[k][0][0]),2)+ Qhom[0][1]* ... more efficient (TODO) Qhom is symmetric
- term1 += Qhom[0][0]*pow(X[k][0],2) + Qhom[0][1]*X[k][1]*X[k][0] + Qhom[0][2]*X[k][2]*X[k][0]
- + Qhom[1][0]*X[k][0]*X[k][1] + Qhom[1][1]*pow(X[k][1],2) + Qhom[1][2]*X[k][2]*X[k][1]
- + Qhom[2][0]*X[k][0]*X[k][2] + Qhom[2][1]*X[k][1]*X[k][2] + Qhom[2][2]*pow(X[k][2],2);
+ term1 += Qhom[0][0]*pow(X[k][0],2) + Qhom[0][1]*X[k][1]*X[k][0] + Qhom[0][2]*X[k][2]*X[k][0]
+ + Qhom[1][0]*X[k][0]*X[k][1] + Qhom[1][1]*pow(X[k][1],2) + Qhom[1][2]*X[k][2]*X[k][1]
+ + Qhom[2][0]*X[k][0]*X[k][2] + Qhom[2][1]*X[k][1]*X[k][2] + Qhom[2][2]*pow(X[k][2],2);
}
// term1 = term1 * 0.5 * weight;
term1 = term1 * weight;
@@ -719,29 +719,29 @@ namespace Dune::GFE
// {
// term2 += weight * secondFF[i][j] * Beff[i][j];
// }
-
+
FieldVector<RT,3> secondFFCoefficients = matrixToSymCoefficients(secondFF);
FieldVector<RT,3> BeffCoefficients = matrixToSymCoefficients(Beff);
RT term2 = 0.0;
- term2 += Qhom[0][0]*BeffCoefficients[0]*secondFFCoefficients[0] + Qhom[0][1]*BeffCoefficients[1]*secondFFCoefficients[0] + Qhom[0][2]*BeffCoefficients[2]*secondFFCoefficients[0]
- + Qhom[1][0]*BeffCoefficients[0]*secondFFCoefficients[1] + Qhom[1][1]*BeffCoefficients[1]*secondFFCoefficients[1] + Qhom[1][2]*BeffCoefficients[2]*secondFFCoefficients[1]
- + Qhom[2][0]*BeffCoefficients[0]*secondFFCoefficients[2] + Qhom[2][1]*BeffCoefficients[1]*secondFFCoefficients[2] + Qhom[2][2]*BeffCoefficients[2]*secondFFCoefficients[2];
+ term2 += Qhom[0][0]*BeffCoefficients[0]*secondFFCoefficients[0] + Qhom[0][1]*BeffCoefficients[1]*secondFFCoefficients[0] + Qhom[0][2]*BeffCoefficients[2]*secondFFCoefficients[0]
+ + Qhom[1][0]*BeffCoefficients[0]*secondFFCoefficients[1] + Qhom[1][1]*BeffCoefficients[1]*secondFFCoefficients[1] + Qhom[1][2]*BeffCoefficients[2]*secondFFCoefficients[1]
+ + Qhom[2][0]*BeffCoefficients[0]*secondFFCoefficients[2] + Qhom[2][1]*BeffCoefficients[1]*secondFFCoefficients[2] + Qhom[2][2]*BeffCoefficients[2]*secondFFCoefficients[2];
term2 = 2.0 * term2 * weight;
- // auto term3 = 0.5 * weight* Beff.frobenius_norm2();
+ // auto term3 = 0.5 * weight* Beff.frobenius_norm2();
+
+ RT term3 = 0.0;
- RT term3 = 0.0;
+ term3 += Qhom[0][0]*BeffCoefficients[0]*BeffCoefficients[0] + Qhom[0][1]*BeffCoefficients[1]*BeffCoefficients[0] + Qhom[0][2]*BeffCoefficients[2]*BeffCoefficients[0]
+ + Qhom[1][0]*BeffCoefficients[0]*BeffCoefficients[1] + Qhom[1][1]*BeffCoefficients[1]*BeffCoefficients[1] + Qhom[1][2]*BeffCoefficients[2]*BeffCoefficients[1]
+ + Qhom[2][0]*BeffCoefficients[0]*BeffCoefficients[2] + Qhom[2][1]*BeffCoefficients[1]*BeffCoefficients[2] + Qhom[2][2]*BeffCoefficients[2]*BeffCoefficients[2];
- term3 += Qhom[0][0]*BeffCoefficients[0]*BeffCoefficients[0] + Qhom[0][1]*BeffCoefficients[1]*BeffCoefficients[0] + Qhom[0][2]*BeffCoefficients[2]*BeffCoefficients[0]
- + Qhom[1][0]*BeffCoefficients[0]*BeffCoefficients[1] + Qhom[1][1]*BeffCoefficients[1]*BeffCoefficients[1] + Qhom[1][2]*BeffCoefficients[2]*BeffCoefficients[1]
- + Qhom[2][0]*BeffCoefficients[0]*BeffCoefficients[2] + Qhom[2][1]*BeffCoefficients[1]*BeffCoefficients[2] + Qhom[2][2]*BeffCoefficients[2]*BeffCoefficients[2];
-
// term3 = term3 * 0.5 * weight ;
term3 = term3 * weight ;
@@ -751,7 +751,7 @@ namespace Dune::GFE
// std::cout << "term1 - term2 + term3: " << term1 - term2 + term3 << std::endl;
// harmonicEnergy += weight * G.frobenius_norm2();
- harmonicEnergy += term1 - term2 + term3; //eigentlich muss man term2 abziehen bei | II - Z |
+ harmonicEnergy += term1 - term2 + term3; //eigentlich muss man term2 abziehen bei | II - Z |
// std::cout << "harmonicEnergy: " << harmonicEnergy << std::endl;
}
@@ -760,8 +760,8 @@ namespace Dune::GFE
#if 0
/**
- * @brief VERSION - 3 : Mixed version using the binomal formula (a-b)^2 = a^2 - 2ab + b^2
- * for | II - Beff |^2 and discretize every term individually.
+ * @brief VERSION - 3 : Mixed version using the binomal formula (a-b)^2 = a^2 - 2ab + b^2
+ * for | II - Beff |^2 and discretize every term individually.
* *But with |II|^2 instead of |D^2y|^2
*/
// Gauss-Quadrature:
@@ -774,34 +774,34 @@ namespace Dune::GFE
{
//Get values of the P2-Basis functions on current quadrature point
- std::vector<FieldVector<double,1>> basisValues;
+ std::vector<FieldVector<double,1> > basisValues;
lagrangeLFE_.localBasis().evaluateFunction(quadPoint.position(), basisValues);
// Get Jacobians of the P2-Basis functions on current quadrature point
- std::vector<FieldMatrix<double, 1, gridDim>> referenceGradients;
+ std::vector<FieldMatrix<double, 1, gridDim> > referenceGradients;
lagrangeLFE_.localBasis().evaluateJacobian(quadPoint.position(), referenceGradients);
const auto jacobian = geometry.jacobianInverseTransposed(quadPoint.position());
const auto integrationElement = geometry.integrationElement(quadPoint.position());
- std::vector<FieldVector<RT, gridDim>> gradients(referenceGradients.size());
+ std::vector<FieldVector<RT, gridDim> > gradients(referenceGradients.size());
for (size_t i = 0; i<gradients.size(); i++)
jacobian.mv(referenceGradients[i][0], gradients[i]);
- Tensor3<RT,3,2,2> discreteHessian(0);
+ Tensor3<RT,3,2,2> discreteHessian(0);
FieldMatrix<RT, 3, gridDim> discreteGradient(0);
for (int k=0; k<3; k++)
- for (int l=0; l<gridDim; l++)
- for(std::size_t i=0; i<lagrangeLFE_.size(); i++)
- {
- discreteGradient[k][l] += discreteJacobianCoefficients[i][k][l]*basisValues[i];
- discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0];
- discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][1];
-
- }
+ for (int l=0; l<gridDim; l++)
+ for(std::size_t i=0; i<lagrangeLFE_.size(); i++)
+ {
+ discreteGradient[k][l] += discreteJacobianCoefficients[i][k][l]*basisValues[i];
+ discreteHessian[k][l][0] += discreteJacobianCoefficients[i][k][l]*gradients[i][0];
+ discreteHessian[k][l][1] += discreteJacobianCoefficients[i][k][l]*gradients[i][1];
+
+ }
//compute normal vector (cross product of partial derivatives)
@@ -831,22 +831,22 @@ namespace Dune::GFE
FieldMatrix<RT,2,2> secondFF(0);
for(size_t m=0; m<2; m++)
- for(size_t n=0; n<2; n++)
- for(size_t k=0; k<3; k++)
- {
- secondFF[m][n] += surfaceNormal[k]*discreteHessian[k][n][m];
- //Test: transposed version
- // secondFF[m][n] += discreteHessian[k][m][n]*surfaceNormal[k];
- // secondFF[0][0] += surfaceNormal[k]*discreteHessian[k][0][0];
- // secondFF[0][1] += surfaceNormal[k]*discreteHessian[k][1][0];
- // secondFF[1][0] += surfaceNormal[k]*discreteHessian[k][0][1];
- // secondFF[1][1] += surfaceNormal[k]*discreteHessian[k][1][1];
- }
-
- // substract effective prestrain
- // G = G + Beff;
-
- //Take symmetric part?
+ for(size_t n=0; n<2; n++)
+ for(size_t k=0; k<3; k++)
+ {
+ secondFF[m][n] += surfaceNormal[k]*discreteHessian[k][n][m];
+ //Test: transposed version
+ // secondFF[m][n] += discreteHessian[k][m][n]*surfaceNormal[k];
+ // secondFF[0][0] += surfaceNormal[k]*discreteHessian[k][0][0];
+ // secondFF[0][1] += surfaceNormal[k]*discreteHessian[k][1][0];
+ // secondFF[1][0] += surfaceNormal[k]*discreteHessian[k][0][1];
+ // secondFF[1][1] += surfaceNormal[k]*discreteHessian[k][1][1];
+ }
+
+ // substract effective prestrain
+ // G = G + Beff;
+
+ //Take symmetric part?
// auto symG = 0.5*(G.transposed() + G);
@@ -885,12 +885,12 @@ namespace Dune::GFE
RT term2 = 0.0;
for(size_t i=0; i<2; i++)
- for(size_t j=0; j<2; j++)
- {
- term2 += weight * secondFF[i][j] * Beff[i][j];
- }
+ for(size_t j=0; j<2; j++)
+ {
+ term2 += weight * secondFF[i][j] * Beff[i][j];
+ }
- auto term3 = 0.5 * weight* Beff.frobenius_norm2();
+ auto term3 = 0.5 * weight* Beff.frobenius_norm2();
// std::cout << "term1: " << term1 << std::endl;
// std::cout << "term2: " << term2 << std::endl;
@@ -898,7 +898,7 @@ namespace Dune::GFE
// std::cout << "term1 - term2 + term3: " << term1 - term2 + term3 << std::endl;
// harmonicEnergy += weight * G.frobenius_norm2();
- harmonicEnergy += term1 - term2 + term3; //eigentlich muss man term2 abziehen bei | II - Z |
+ harmonicEnergy += term1 - term2 + term3; //eigentlich muss man term2 abziehen bei | II - Z |
// std::cout << "harmonicEnergy: " << harmonicEnergy << std::endl;
}
@@ -907,8 +907,8 @@ namespace Dune::GFE
/**
* @brief Compute contribution of the force Term
- *
- * Integrate the scalar product of the force 'f'
+ *
+ * Integrate the scalar product of the force 'f'
* with the local deformation function 'localFunction_'
* over the current element.
*/
@@ -918,17 +918,17 @@ namespace Dune::GFE
{
for (auto&& quadPoint : quadRule)
{
- auto deformationValue = localFunction_.evaluate(quadPoint.position());
- auto forceValue = localForce_(quadPoint.position());
- // printvector(std::cout, deformationValue.globalCoordinates(), "deformationValue", "--");
- // printvector(std::cout, forceValue, "forceValue", "--");
- // const auto jacobian = geometry.jacobianInverseTransposed(quadPoint.position());
- auto weight = quadPoint.weight() * element.geometry().integrationElement(quadPoint.position());
- forceTermEnergy += deformationValue.globalCoordinates() * forceValue * weight;
- // std::cout << "forceTermEnergy:" << forceTermEnergy << std::endl;
+ auto deformationValue = localFunction_.evaluate(quadPoint.position());
+ auto forceValue = localForce_(quadPoint.position());
+ // printvector(std::cout, deformationValue.globalCoordinates(), "deformationValue", "--");
+ // printvector(std::cout, forceValue, "forceValue", "--");
+ // const auto jacobian = geometry.jacobianInverseTransposed(quadPoint.position());
+ auto weight = quadPoint.weight() * element.geometry().integrationElement(quadPoint.position());
+ forceTermEnergy += deformationValue.globalCoordinates() * forceValue * weight;
+ // std::cout << "forceTermEnergy:" << forceTermEnergy << std::endl;
}
}
-
+
return harmonicEnergy - forceTermEnergy;
}
@@ -947,4 +947,4 @@ namespace Dune::GFE
};
} // namespace Dune::GFE
-#endif
\ No newline at end of file
+#endif
diff --git a/dune/microstructure/localdiscretekirchhoffbendingisometry.hh b/dune/microstructure/localdiscretekirchhoffbendingisometry.hh
new file mode 100644
index 0000000000000000000000000000000000000000..6ebf07fe88a13d9f1e19ff29652644cf431ccfd5
--- /dev/null
+++ b/dune/microstructure/localdiscretekirchhoffbendingisometry.hh
@@ -0,0 +1,388 @@
+#ifndef DUNE_MICROSTRUCTURE_LOCALDISCRETEKIRCHHOFFBENDINGISOMETRY_HH
+#define DUNE_MICROSTRUCTURE_LOCALDISCRETEKIRCHHOFFBENDINGISOMETRY_HH
+
+#include <vector>
+
+#include <dune/common/fvector.hh>
+
+#include <dune/geometry/type.hh>
+#include <dune/geometry/quadraturerules.hh>
+
+#include <dune/gfe/spaces/productmanifold.hh>
+#include <dune/gfe/spaces/realtuple.hh>
+#include <dune/gfe/spaces/rotation.hh>
+#include <dune/gfe/functions/localisometrycomponentfunction.hh>
+#include <dune/gfe/localprojectedfefunction.hh>
+#include <dune/gfe/bendingisometryhelper.hh>
+
+#include <dune/functions/functionspacebases/cubichermitebasis.hh>
+
+namespace Dune::GFE
+{
+ /** \brief Interpolate a Discrete Kirchhoff finite element function from a set of RealTuple x Rotation coefficients
+ *
+ * The Discrete Kirchhoff finite element is a Hermite-type element.
+ * The Rotation component of the coefficient set represents the deformation gradient.
+ *
+ * The class stores both a global coefficient vector 'coefficients_'
+ * as well as a local coefficient vector 'localHermiteCoefficients_'
+ * that is used for local evaluation after binding to an element.
+ *
+ *
+ * \tparam DiscreteKirchhoffBasis The basis used to compute function values
+ * \tparam CoefficientBasis The basis used to index the coefficient vector.
+ * \tparam Coefficients The container of global coefficients
+ */
+ template <int dim, class ctype, class LocalHermiteFiniteElement>
+ class LocalDiscreteKirchhoffBendingIsometry
+ {
+
+ public:
+ using TargetSpace = GFE::ProductManifold<RealTuple<double,3>, Rotation<double,3> >;
+ using ATargetSpace = typename TargetSpace::template rebind<adouble>::other;
+
+ using IsometryCoefficients = std::vector<TargetSpace>;
+
+ constexpr static int gridDim = dim;
+ using RT = ctype;
+ // using Coefficient = typename Coefficients::value_type;
+ // using RT = typename Coefficient::ctype;
+
+ static constexpr int components_ = 3;
+
+
+ // typedef typename GFE::RealTuple<RT, components_ > ValueType;
+ using ValueType = RealTuple<double,components_>;
+
+ typedef typename Dune::LagrangeSimplexLocalFiniteElement<ctype, double, gridDim, 1> P1LagrangeLFE;
+
+ typedef Dune::GFE::LocalProjectedFEFunction<gridDim, ctype, P1LagrangeLFE, Dune::GFE::ProductManifold<RealTuple<RT,components_>, Rotation<RT,components_> > > LocalPBInterpolationRule;
+
+ /** \brief The type used for derivatives */
+ typedef Dune::FieldMatrix<RT, components_, gridDim> DerivativeType;
+
+
+ // /** \brief Constructor
+ // * \param basis An object of Hermite basis type
+ // * \param coefficientBasis An object of type LagrangeBasis<GridView,1>
+ // * \param globalIsometryCoefficients Values and derivatives of the function at the Lagrange points
+ // */
+ // LocalDiscreteKirchhoffBendingIsometry(const DiscreteKirchhoffBasis& discreteKirchhoffBasis,
+ // const CoefficientBasis& coefficientBasis,
+ // Coefficients& globalIsometryCoefficients)
+ // : basis_(discreteKirchhoffBasis),
+ // coefficientBasis_(coefficientBasis),
+ // localView_(basis_),
+ // localViewCoefficient_(coefficientBasis_),
+ // globalIsometryCoefficients_(globalIsometryCoefficients)
+ // {}
+ /** \brief Constructor
+ * \param localHermiteFiniteElement A Hermite finite element
+ * \param coefficients Values of the function at the Lagrange points
+ */
+ LocalDiscreteKirchhoffBendingIsometry(const LocalHermiteFiniteElement& localHermiteFiniteElement,
+ const IsometryCoefficients& isometryCoefficients)
+ : localHermiteFiniteElement_(localHermiteFiniteElement),
+ isometryCoefficients_(isometryCoefficients)
+ {
+ convertIsometryToHermiteCoefficients(isometryCoefficients);
+ }
+
+ // /** \brief The number of Local degrees of freedom */
+ // unsigned int size() const
+ // {
+ // return LocalHermiteFiniteElement_.localBasis().size();
+ // }
+
+ /** \brief The type of the reference element */
+ Dune::GeometryType type() const
+ {
+ return localHermiteFiniteElement_.type();
+ }
+
+ const LocalHermiteFiniteElement& localFiniteElement() const
+ {
+ return localHermiteFiniteElement_;
+ }
+
+
+ // /** \brief Evaluate the function */
+ // auto evaluate(const Dune::FieldVector<ctype, dim>& local) const;
+
+ // /** \brief Evaluate the derivative of the function */
+ // DerivativeType evaluateDerivative(const Dune::FieldVector<ctype, dim>& local) const;
+
+ // // /** \brief Evaluate the derivative of the function, if you happen to know the function value (much faster!)
+ // // * \param local Local coordinates in the reference element where to evaluate the derivative
+ // // * \param q Value of the local gfe function at 'local'. If you provide something wrong here the result will be wrong, too!
+ // // *
+ // // * \note This method is only usable in the conforming setting, because it requires the caller
+ // // * to hand over the interpolation value as a TargetSpace object.
+ // // */
+ // // DerivativeType evaluateDerivative(const Dune::FieldVector<ctype, dim>& local,
+ // // const TargetSpace& q) const;
+
+ // /** \brief Evaluate the value and the derivative of the interpolation function
+ // *
+ // * \return A std::pair containing the value and the first derivative of the interpolation function.
+ // * If the interpolation is conforming then the first member of the pair will be a TargetSpace.
+ // * Otherwise it will be a RealTuple.
+ // */
+ // auto evaluateValueAndDerivative(const Dune::FieldVector<ctype, dim>& local) const;
+
+
+
+ /** \brief Get the i'th base coefficient. */
+ const TargetSpace& coefficient(int i) const
+ {
+ return isometryCoefficients_[i];
+ }
+
+
+
+
+ /**
+ The coefficients are of "manifold"-type. In order to construct a linear combination of these values
+ with the values of the Hermite-basis evaluations we need to first interpolate them into the hermite basis
+ to get the scaling right.
+ */
+ void convertIsometryToHermiteCoefficients(const IsometryCoefficients& localIsometryCoefficients)
+ {
+ // localViewCoefficient_.bind(element);
+
+ //Create a LocalProjected-Finite element from the local coefficients used for interpolation.
+ // auto P1LagrangeLFE = localViewCoefficient_.tree().finiteElement();
+ Dune::LagrangeSimplexLocalFiniteElement<ctype, double, gridDim, 2> P1LagrangeLFE ;
+ LocalPBInterpolationRule localPBfunction(P1LagrangeLFE,localIsometryCoefficients);
+
+ /**
+ Interpolate into the local hermite space for each component.
+ */
+ // const auto &localHermiteFiniteElement = localView_.tree().child(0).finiteElement();
+ for(size_t k=0; k<components_; k++)
+ {
+ std::vector<RT> hermiteComponentCoefficients;
+ Dune::GFE::Impl::LocalIsometryComponentFunction<double,LocalPBInterpolationRule> localIsometryComponentFunction(localPBfunction,k);
+
+ localHermiteFiniteElement_.localInterpolation().interpolate(localIsometryComponentFunction,hermiteComponentCoefficients);
+
+ for(size_t i=0; i<localHermiteFiniteElement_.size(); i++)
+ localHermiteCoefficients_[i][k] = hermiteComponentCoefficients[i];
+ }
+ }
+
+
+
+ // -------------------------------------------------
+
+ // void bind(const typename GridView::template Codim<0>::Entity& element)
+ // {
+ // localView_.bind(element);
+
+ // /** extract the local coefficients from the global coefficient vector */
+ // std::vector<Coefficient> localIsometryCoefficients;
+ // getLocalIsometryCoefficients(localIsometryCoefficients,element);
+ // updateLocalHermiteCoefficients(localIsometryCoefficients,element);
+ // }
+
+ // /** bind to an element and update the coefficient member variables for a set of new local coefficients */
+ // void bind(const typename GridView::template Codim<0>::Entity& element,const Coefficients& newLocalCoefficients)
+ // {
+ // this->bind(element);
+
+ // // Update the global isometry coefficients.
+ // for (unsigned int vertex=0; vertex<3; ++vertex)
+ // {
+ // size_t localIdx = localViewCoefficient_.tree().localIndex(vertex);
+ // size_t globalIdx = localViewCoefficient_.index(localIdx);
+ // globalIsometryCoefficients_[globalIdx] = newLocalCoefficients[vertex];
+ // }
+
+ // // Update the local hermite coefficients.
+ // updateLocalHermiteCoefficients(newLocalCoefficients,element);
+ // }
+
+
+ /** \brief Evaluate the function */
+ auto evaluate(const Dune::FieldVector<ctype, gridDim>& local) const
+ {
+ // const auto &localFiniteElement = localView_.tree().child(0).finiteElement();
+
+ // Evaluate the shape functions
+ std::vector<FieldVector<double, 1> > values;
+ localHermiteFiniteElement_.localBasis().evaluateFunction(local, values);
+
+ FieldVector<RT,components_> result(0);
+
+ for(size_t i=0; i<localHermiteFiniteElement_.size(); i++)
+ result.axpy(values[i][0], localHermiteCoefficients_[i]);
+
+ return (RealTuple<RT, components_>)result;
+ }
+
+ /** \brief Evaluate the derivative of the function */
+ DerivativeType evaluateDerivative(const Dune::FieldVector<ctype, gridDim>& local) const
+ {
+ // const auto &LocalHermiteFiniteElement = localView_.tree().child(0).finiteElement();
+ // const auto jacobianInverse = localView_.element().geometry().jacobianInverse(local);
+
+ std::vector<FieldMatrix<double,1,gridDim> > jacobianValues;
+ localHermiteFiniteElement_.localBasis().evaluateJacobian(local, jacobianValues);
+ // for (size_t i = 0; i<jacobianValues.size(); i++)
+ // jacobianValues[i] = jacobianValues[i] * jacobianInverse;
+
+ DerivativeType result(0);
+
+ for(size_t i=0; i<localHermiteFiniteElement_.size(); i++)
+ for (unsigned int k = 0; k<components_; k++)
+ for (unsigned int j = 0; j<gridDim; ++j)
+ result[k][j] += (jacobianValues[i][0][j] * localHermiteCoefficients_[i][k]);
+
+ return result;
+ }
+
+
+ auto evaluateValueAndDerivative(const Dune::FieldVector<ctype, dim>& local) const
+ {
+ // Construct the type of the result -- it depends on whether the interpolation
+ // is conforming or not.
+ // using Value = std::conditional_t<conforming,TargetSpace,RealTuple<RT,embeddedDim> >;
+
+
+ std::pair<ValueType,DerivativeType> result;
+
+ ///////////////////////////////////////////////////////////
+ // Compute the value of the interpolation function
+ ///////////////////////////////////////////////////////////
+
+ // Evaluate the shape functions
+ std::vector<FieldVector<double, 1> > values;
+ localHermiteFiniteElement_.localBasis().evaluateFunction(local, values);
+
+ FieldVector<RT,components_> value_result(0);
+
+ for(size_t i=0; i<localHermiteFiniteElement_.size(); i++)
+ value_result.axpy(values[i][0], localHermiteCoefficients_[i]);
+
+ result.first = (RealTuple<RT, components_>)value_result;
+
+
+ ///////////////////////////////////////////////////////////
+ // Compute the derivative of the interpolation function
+ ///////////////////////////////////////////////////////////
+
+ std::vector<FieldMatrix<double,1,gridDim> > jacobianValues;
+ localHermiteFiniteElement_.localBasis().evaluateJacobian(local, jacobianValues);
+
+ DerivativeType der_result(0);
+
+ for(size_t i=0; i<localHermiteFiniteElement_.size(); i++)
+ for (unsigned int k = 0; k<components_; k++)
+ for (unsigned int j = 0; j<gridDim; ++j)
+ der_result[k][j] += (jacobianValues[i][0][j] * localHermiteCoefficients_[i][k]);
+
+ result.second = der_result;
+
+ return result;
+ }
+
+ /** \brief Evaluate the derivative of the function, if you happen to know the function value (much faster!)
+ * \param local Local coordinates in the reference element where to evaluate the derivative
+ * \param q Value of the local gfe function at 'local'. If you provide something wrong here the result will be wrong, too!
+ */
+ DerivativeType evaluateDerivative(const Dune::FieldVector<ctype, gridDim>& local,
+ const ValueType& q) const
+ {
+ return evaluateDerivative(local);
+ }
+
+ // //! Obtain the grid view that the basis is defined on
+ // const GridView &gridView() const
+ // {
+ // return basis_.gridView();
+ // }
+
+ // void updateglobalIsometryCoefficients(const Coefficients& newCoefficients)
+ // {
+ // globalIsometryCoefficients_ = newCoefficients;
+// }
+
+// /**
+// Update the local hermite basis coefficient vector
+// */
+// void updateLocalHermiteCoefficients(const Coefficients& localIsometryCoefficients,const typename GridView::template Codim<0>::Entity& element)
+// {
+// localViewCoefficient_.bind(element);
+
+// //Create a LocalProjected-Finite element from the local coefficients used for interpolation.
+// auto P1LagrangeLFE = localViewCoefficient_.tree().finiteElement();
+// LocalInterpolationRule localPBfunction(P1LagrangeLFE,localIsometryCoefficients);
+
+// /**
+// Interpolate into the local hermite space for each component.
+// */
+// const auto &localHermiteFiniteElement = localView_.tree().child(0).finiteElement();
+
+// for(size_t k=0; k<components_; k++)
+// {
+// std::vector<RT> hermiteComponentCoefficients;
+// Dune::GFE::Impl::LocalIsometryComponentFunction<double,LocalInterpolationRule> localIsometryComponentFunction(localPBfunction,k);
+
+// localHermiteFiniteElement.localInterpolation().interpolate(localIsometryComponentFunction,hermiteComponentCoefficients);
+
+// for(size_t i=0; i<localHermiteFiniteElement.size(); i++)
+// localHermiteCoefficients_[i][k] = hermiteComponentCoefficients[i];
+// }
+// }
+
+// /** Extract the local isometry coefficients. */
+// void getLocalIsometryCoefficients(std::vector<Coefficient>& in,const typename GridView::template Codim<0>::Entity& element)
+// {
+// localViewCoefficient_.bind(element);
+
+// in.resize(3);
+// for (unsigned int vertex = 0; vertex<3; ++vertex)
+// {
+// size_t localIdx = localViewCoefficient_.tree().localIndex(vertex);
+// size_t globalIdx = localViewCoefficient_.index(localIdx);
+// in[vertex] = globalIsometryCoefficients_[globalIdx];
+// }
+// }
+
+
+// #if 0
+// /** \brief Get the i'th base coefficient. */
+// TargetSpace coefficient(int i) const
+// {
+// return globalIsometryCoefficients_[i];
+// }
+// #endif
+ private:
+
+ /** \brief Hermite Finite element */
+ const LocalHermiteFiniteElement& localHermiteFiniteElement_;
+
+ // /** \brief The Lagrange basis used to assign manifold-valued degrees of freedom */
+ // const CoefficientBasis& coefficientBasis_;
+
+ // /** \brief The hermite basis used to represent deformations */
+ // const DiscreteKirchhoffBasis& basis_;
+
+ // mutable typename DiscreteKirchhoffBasis::LocalView localView_;
+ // mutable typename CoefficientBasis::LocalView localViewCoefficient_;
+
+ // /** \brief The global coefficient vector */
+ // Coefficients& globalIsometryCoefficients_;
+
+ // The coefficients of this interpolation rule
+ IsometryCoefficients isometryCoefficients_;
+
+ static constexpr int localHermiteBasisSize_ = Dune::Functions::Impl::CubicHermiteLocalCoefficients<gridDim,true>::size();
+
+ /** \brief The local coefficient vector of the hermite basis. */
+ std::array<Dune::FieldVector<RT,components_>,localHermiteBasisSize_> localHermiteCoefficients_;
+
+ };
+
+} // end namespace Dune::GFE
+#endif // DUNE_MICROSTRUCTURE_LOCALDISCRETEKIRCHHOFFBENDINGISOMETRY_HH
diff --git a/dune/microstructure/matrix_operations.hh b/dune/microstructure/matrix_operations.hh
index e99a6112b9dc22746703dbf6a3aae01e7ccc3fb5..868e254dcfcc2a59d2f36aa9665a602da468dfb2 100644
--- a/dune/microstructure/matrix_operations.hh
+++ b/dune/microstructure/matrix_operations.hh
@@ -3,230 +3,180 @@
namespace MatrixOperations {
- using MatrixRT = Dune::FieldMatrix< double, 3, 3>;
- using VectorRT = Dune::FieldVector< double, 3>;
-
- using std::sin;
- using std::cos;
-
-
-
- static MatrixRT sym (MatrixRT M) { // 1/2 (M^T + M)
- MatrixRT ret(0);
- for (int i=0; i<3; i++)
- {
- ret[i][i] = M[i][i];
- for (int j=i+1; j<3; j++)
- {
- ret[i][j] = 0.5*(M[i][j] + M[j][i]);
- ret[j][i] = ret[i][j];
- }
- }
- return ret;
- }
-
-
- static VectorRT crossProduct (VectorRT v, VectorRT w) { // v otimes w
- return {v[1]*w[2] - v[2]*w[1], -1*(v[0]*w[2] - v[2]*w[0]), v[0]*w[1] - v[1]*w[0]};
- }
-
- static MatrixRT rankoneTensorproduct (VectorRT v, VectorRT w) { // v otimes w
- return
- {{v[0]*w[0], v[1]*w[0], v[2]*w[0]},
- {v[0]*w[1], v[1]*w[1], v[2]*w[1]},
- {v[0]*w[2], v[1]*w[2], v[2]*w[2]}};
- }
-
- static MatrixRT nematicLiquidCrystal (double p, VectorRT n){ //B = 1/6*p*Id + 1/2*p*(n otimes n)
- MatrixRT B(0);
- for (int i=0;i<3;i++)
- B[i][i]=p/6.0;
- MatrixRT n_ot_n = rankoneTensorproduct(n,n);
- n_ot_n*=p/2.0;
- B += n_ot_n;
- return B;
- }
-
- static MatrixRT biotStrainApprox (VectorRT U, VectorRT k, VectorRT e_cs){ //E_h = (U + k x e_cs, 0, 0)
- VectorRT k_x_ecs = crossProduct(k, e_cs);
- VectorRT U_plus_k_x_ecs = U + k_x_ecs;
- VectorRT e_1 = {1, 0, 0};
- return rankoneTensorproduct(U_plus_k_x_ecs, e_1);
- }
-
-
- static MatrixRT crossSectionDirectionScaling(double w, MatrixRT M){
- return {{M[0][0], M[0][1], w*M[0][2]},
- {M[1][0], M[1][1], w*M[1][2]},
- {M[2][0], M[2][1], w*M[2][2]}
- };
- }
-
- static double trace (MatrixRT M){
- return M[0][0]+ M[1][1] + M[2][2];
- }
-
- static double scalarProduct (MatrixRT M1, MatrixRT M2){
- double sum = 0.0;
- for (int i=0; i<3; i++)
- for (int j=0; j<3; j++)
- sum += M1[i][j] * M2[i][j];
- return sum;
- }
-
-
- /**
- * @brief Determines rotation matrix based on an axis and an angle
- *
- * @param axis
- * @param angle
- * @return MatrixRT
- */
- static MatrixRT rotationMatrix(int axis, double angle){
-
- switch (axis)
- {
- case 0:
- {
- return {{1.0, 0, 0 },
- { 0, cos(angle), -1.0*sin(angle)},
- { 0, sin(angle), cos(angle)}};
- }
- case 1:
- {
- return {{ cos(angle), 0, sin(angle)},
- { 0, 1.0, 0 },
- {-1.0*sin(angle), 0, cos(angle)}};
- }
- case 2:
- {
- return {{cos(angle), -1.0*sin(angle), 0},
- {sin(angle), cos(angle), 0},
- { 0, 0, 1.0}};
- }
- default:
- DUNE_THROW(Dune::Exception, " axis not feasible. rotationMatrix is only implemented for 3x3-matrices. Choose between 0: x-axis, 1: y-axis, 2: z-axis");
- }
- }
-
- /**
- * @brief 6x6 matrix that transforms the strain tensor. This matrix is used to
- * transform the compliance matrix (given in Voigt notation) into another frame.
- * see 'https://en.wikipedia.org/wiki/Orthotropic_material#Condition_for_material_symmetry_2'
- * for details.
- *
- * @param axis
- * @param angle
- * @return MatrixRT
- */
- static Dune::FieldMatrix<double,6,6> rotationMatrixCompliance(int axis, double angle){
-
- MatrixRT R = rotationMatrix(axis,angle);
-
- return {{ R[0][0]*R[0][0], R[0][1]*R[0][1], R[0][2]*R[0][2], R[0][1]*R[0][2], R[0][0]*R[0][2], R[0][0]*R[0][1]},
- { R[1][0]*R[1][0], R[1][1]*R[1][1], R[1][2]*R[1][2], R[1][1]*R[1][2], R[1][0]*R[1][2], R[1][0]*R[1][1]},
- { R[2][0]*R[2][0], R[2][1]*R[2][1], R[2][2]*R[2][2], R[2][1]*R[2][2], R[2][0]*R[2][2], R[2][0]*R[2][1]},
- {2.0*R[1][0]*R[2][0], 2.0*R[1][1]*R[2][1], 2.0*R[1][2]*R[2][2], R[1][1]*R[2][2]+R[1][2]*R[2][1], R[1][0]*R[2][2]+R[1][2]*R[2][0], R[1][0]*R[2][1]+R[1][1]*R[2][0]},
- {2.0*R[0][0]*R[2][0], 2.0*R[0][1]*R[2][1], 2.0*R[0][2]*R[2][2], R[0][1]*R[2][2]+R[0][2]*R[2][1], R[0][0]*R[2][2]+R[0][2]*R[2][0], R[0][0]*R[2][1]+R[0][1]*R[2][0]},
- {2.0*R[0][0]*R[1][0], 2.0*R[0][1]*R[1][1], 2.0*R[0][2]*R[1][2], R[0][1]*R[1][2]+R[0][2]*R[1][1], R[0][0]*R[1][2]+R[0][2]*R[1][0], R[0][0]*R[1][1]+R[0][1]*R[1][0]}
- };
- }
-
-
- /**
- * @brief Scale last three columns of stiffness matrix by a factor of 2.
- * Inserting this facotr in the stiffness matrix allows to use the
- * same Matrix-to-Vector mapping for both the stress and the strain.
- *
- * @param S Stiffness matrix
- */
- static void scaleStiffnessMatrix(Dune::FieldMatrix<double,6,6>& S){
- for(size_t i = 0; i<6; i++)
+ using MatrixRT = Dune::FieldMatrix< double, 3, 3>;
+ using VectorRT = Dune::FieldVector< double, 3>;
+
+ using std::sin;
+ using std::cos;
+
+
+
+ static MatrixRT sym (MatrixRT M) { // 1/2 (M^T + M)
+ MatrixRT ret(0);
+ for (int i=0; i<3; i++)
+ {
+ ret[i][i] = M[i][i];
+ for (int j=i+1; j<3; j++)
+ {
+ ret[i][j] = 0.5*(M[i][j] + M[j][i]);
+ ret[j][i] = ret[i][j];
+ }
+ }
+ return ret;
+ }
+
+
+ static MatrixRT rankoneTensorproduct (VectorRT v, VectorRT w) { // v otimes w
+ return
+ {{v[0]*w[0], v[1]*w[0], v[2]*w[0]},
+ {v[0]*w[1], v[1]*w[1], v[2]*w[1]},
+ {v[0]*w[2], v[1]*w[2], v[2]*w[2]}};
+ }
+
+ static MatrixRT crossSectionDirectionScaling(double w, MatrixRT M){
+ return {{M[0][0], M[0][1], w*M[0][2]},
+ {M[1][0], M[1][1], w*M[1][2]},
+ {M[2][0], M[2][1], w*M[2][2]}
+ };
+ }
+
+ static double trace (MatrixRT M){
+ return M[0][0]+ M[1][1] + M[2][2];
+ }
+
+ static double scalarProduct (MatrixRT M1, MatrixRT M2){
+ double sum = 0.0;
+ for (int i=0; i<3; i++)
+ for (int j=0; j<3; j++)
+ sum += M1[i][j] * M2[i][j];
+ return sum;
+ }
+
+
+ /**
+ * @brief Determines rotation matrix based on an axis and an angle
+ *
+ * @param axis
+ * @param angle
+ * @return MatrixRT
+ */
+ static MatrixRT rotationMatrix(int axis, double angle){
+
+ switch (axis)
+ {
+ case 0 :
+ {
+ return {{1.0, 0, 0 },
+ { 0, cos(angle), -1.0*sin(angle)},
+ { 0, sin(angle), cos(angle)}};
+ }
+ case 1 :
+ {
+ return {{ cos(angle), 0, sin(angle)},
+ { 0, 1.0, 0 },
+ {-1.0*sin(angle), 0, cos(angle)}};
+ }
+ case 2 :
+ {
+ return {{cos(angle), -1.0*sin(angle), 0},
+ {sin(angle), cos(angle), 0},
+ { 0, 0, 1.0}};
+ }
+ default :
+ DUNE_THROW(Dune::Exception, " axis not feasible. rotationMatrix is only implemented for 3x3-matrices. Choose between 0: x-axis, 1: y-axis, 2: z-axis");
+ }
+ }
+
+ /**
+ * @brief 6x6 matrix that transforms the strain tensor. This matrix is used to
+ * transform the compliance matrix (given in Voigt notation) into another frame.
+ * see 'https://en.wikipedia.org/wiki/Orthotropic_material#Condition_for_material_symmetry_2'
+ * for details.
+ *
+ * @param axis
+ * @param angle
+ * @return MatrixRT
+ */
+ static Dune::FieldMatrix<double,6,6> rotationMatrixCompliance(int axis, double angle){
+
+ MatrixRT R = rotationMatrix(axis,angle);
+
+ return {{ R[0][0]*R[0][0], R[0][1]*R[0][1], R[0][2]*R[0][2], R[0][1]*R[0][2], R[0][0]*R[0][2], R[0][0]*R[0][1]},
+ { R[1][0]*R[1][0], R[1][1]*R[1][1], R[1][2]*R[1][2], R[1][1]*R[1][2], R[1][0]*R[1][2], R[1][0]*R[1][1]},
+ { R[2][0]*R[2][0], R[2][1]*R[2][1], R[2][2]*R[2][2], R[2][1]*R[2][2], R[2][0]*R[2][2], R[2][0]*R[2][1]},
+ {2.0*R[1][0]*R[2][0], 2.0*R[1][1]*R[2][1], 2.0*R[1][2]*R[2][2], R[1][1]*R[2][2]+R[1][2]*R[2][1], R[1][0]*R[2][2]+R[1][2]*R[2][0], R[1][0]*R[2][1]+R[1][1]*R[2][0]},
+ {2.0*R[0][0]*R[2][0], 2.0*R[0][1]*R[2][1], 2.0*R[0][2]*R[2][2], R[0][1]*R[2][2]+R[0][2]*R[2][1], R[0][0]*R[2][2]+R[0][2]*R[2][0], R[0][0]*R[2][1]+R[0][1]*R[2][0]},
+ {2.0*R[0][0]*R[1][0], 2.0*R[0][1]*R[1][1], 2.0*R[0][2]*R[1][2], R[0][1]*R[1][2]+R[0][2]*R[1][1], R[0][0]*R[1][2]+R[0][2]*R[1][0], R[0][0]*R[1][1]+R[0][1]*R[1][0]}
+ };
+ }
+
+
+ /**
+ * @brief Scale last three columns of stiffness matrix by a factor of 2.
+ * Inserting this facotr in the stiffness matrix allows to use the
+ * same Matrix-to-Vector mapping for both the stress and the strain.
+ *
+ * @param S Stiffness matrix
+ */
+ static void scaleStiffnessMatrix(Dune::FieldMatrix<double,6,6>& S){
+ for(size_t i = 0; i<6; i++)
for(size_t j = 3; j<6; j++)
{
S[i][j] = 2.0*S[i][j];
}
- }
-
- static double linearizedStVenantKirchhoffDensity(double mu, double lambda, MatrixRT E1, MatrixRT E2) // CHANGED
- {
- auto t1 = 2.0 * mu * sym(E1) + MatrixRT(Dune::ScaledIdentityMatrix<double,3>(lambda * trace(sym(E1))));
- auto tmp1 = scalarProduct(t1,sym(E2));
- return tmp1;
-
- }
-
-
-
- // --- Generalization: Define Quadratic QuadraticForm
- static double QuadraticForm(const double mu, const double lambda, const MatrixRT M){
-
- auto tmp1 = sym(M);
- double tmp2 = tmp1.frobenius_norm();
-// double tmp2 = norm(M); //TEST
- return lambda*std::pow(trace(M),2) + 2.0*mu*pow( tmp2 ,2);
-// return lambda*std::pow(trace(M),2) + 2*mu*pow( norm( sym(M) ),2);
- }
+ }
-
+ static double linearizedStVenantKirchhoffDensity(double mu, double lambda, MatrixRT E1, MatrixRT E2) // CHANGED
+ {
+ auto t1 = 2.0 * mu * sym(E1) + MatrixRT(Dune::ScaledIdentityMatrix<double,3>(lambda * trace(sym(E1))));
+ auto tmp1 = scalarProduct(t1,sym(E2));
+ return tmp1;
- static double generalizedDensity(const double mu, const double lambda, MatrixRT F, MatrixRT G){
- /// Write this whole File as a Class that uses lambda,mu as members ?
-
- // Define L via Polarization-Identity from QuadratifForm
- // <LF,G> := (1/2)*(Q(F+G) - Q(F) - Q(G) )
- return (1.0/2.0)*(QuadraticForm(mu,lambda,F+G) - QuadraticForm(mu,lambda,F) - QuadraticForm(mu,lambda,G) );
- }
+ }
+
+
+
+ // --- Generalization: Define Quadratic QuadraticForm
+ static double QuadraticForm(const double mu, const double lambda, const MatrixRT M){
+
+ auto tmp1 = sym(M);
+ double tmp2 = tmp1.frobenius_norm();
+ // double tmp2 = norm(M); //TEST
+ return lambda*std::pow(trace(M),2) + 2.0*mu*pow( tmp2 ,2);
+ // return lambda*std::pow(trace(M),2) + 2*mu*pow( norm( sym(M) ),2);
+ }
+
+
+
+ static double generalizedDensity(const double mu, const double lambda, MatrixRT F, MatrixRT G){
+ /// Write this whole File as a Class that uses lambda,mu as members ?
+
+ // Define L via Polarization-Identity from QuadratifForm
+ // <LF,G> := (1/2)*(Q(F+G) - Q(F) - Q(G) )
+ return (1.0/2.0)*(QuadraticForm(mu,lambda,F+G) - QuadraticForm(mu,lambda,F) - QuadraticForm(mu,lambda,G) );
+ }
+
+
+ /**
+ * @brief This is used to convert FieldMatrices to 'adouble'
+ * since adouble-type can not be read from ParSet.
+ * is there a better way?
+ *
+ * @tparam Rtype
+ * @tparam IMatrixType
+ * @param A
+ * @param B
+ */
+ template<class Rtype>
+ static void convertFieldMatrix(auto& A,
+ auto& B)
+ {
+ for(size_t i=0; i<B.N(); i++)
+ for(size_t j=0; j<B.M(); j++)
+ B[i][j] = (Rtype)A[i][j];
- static MatrixRT matrixSqrt(MatrixRT M){
- std::cout << "matrixSqrt not implemented!!!" << std::endl;//implement this
- return M;
- }
-
- static double lameMu(double E, double nu){
- return 0.5 * 1.0/(1.0 + nu) * E;
- }
-
- static double lameLambda(double E, double nu){
- return nu/(1.0-2.0*nu) * 1.0/(1.0+nu) * E;
- }
-
- static bool isInRotatedPlane(double phi, double x1, double x2){
- return cos(phi)*x1 + sin(phi)*x2 > 0;
- }
-
-
- extern "C"
- {
-
- MatrixRT new_sym(MatrixRT M)
- {
- return sym(M);
- }
-
- }
-
-
- /**
- * @brief This is used to convert FieldMatrices to 'adouble'
- * since adouble-type can not be read from ParSet.
- * is there a better way?
- *
- * @tparam Rtype
- * @tparam IMatrixType
- * @param A
- * @param B
- */
- template<class Rtype>
- static void convertFieldMatrix(auto& A,
- auto& B)
- {
- for(size_t i=0; i<B.N(); i++)
- for(size_t j=0; j<B.M(); j++)
- B[i][j] = (Rtype)A[i][j];
-
- return;
- }
+ return;
+ }
diff --git a/dune/microstructure/microproblem.hh b/dune/microstructure/microproblem.hh
index 3a4bbfdbc73ba88e85614fc92a650f2e01f0f9db..621f0ea8b29f282f7d68f88c8a1215c425f407ec 100644
--- a/dune/microstructure/microproblem.hh
+++ b/dune/microstructure/microproblem.hh
@@ -26,12 +26,13 @@
#include <dune/istl/spqr.hh>
#include <dune/istl/preconditioners.hh>
#include <dune/istl/io.hh>
-#include <dune/istl/eigenvalue/test/matrixinfo.hh> // TEST: compute condition Number
+#include <dune/istl/eigenvalue/test/matrixinfo.hh> // TEST: compute condition Number
#include <dune/functions/functionspacebases/interpolate.hh>
#include <dune/functions/backends/istlvectorbackend.hh>
#include <dune/functions/functionspacebases/powerbasis.hh>
#include <dune/functions/functionspacebases/compositebasis.hh>
+#include <dune/functions/functionspacebases/cubichermitebasis.hh>
#include <dune/functions/functionspacebases/lagrangebasis.hh>
#include <dune/functions/functionspacebases/periodicbasis.hh>
#include <dune/functions/functionspacebases/subspacebasis.hh>
@@ -40,11 +41,11 @@
#include <dune/functions/gridfunctions/gridviewfunction.hh>
#include <dune/microstructure/matrix_operations.hh>
-#include <dune/microstructure/CorrectorComputer.hh>
-#include <dune/microstructure/EffectiveQuantitiesComputer.hh>
-#include <dune/microstructure/prestrainedMaterial.hh>
+#include <dune/microstructure/CorrectorComputer.hh>
+#include <dune/microstructure/EffectiveQuantitiesComputer.hh>
+#include <dune/microstructure/prestrainedMaterial.hh>
-#include <dune/solvers/solvers/umfpacksolver.hh>
+#include <dune/solvers/solvers/umfpacksolver.hh>
// #include <iomanip> // needed when working with relative paths e.g. from python-scripts
@@ -52,7 +53,7 @@
// using namespace MatrixOperations;
- // method to print types of objects:
+// method to print types of objects:
// template <class T>
// constexpr std::string_view type_name()
// {
@@ -77,254 +78,254 @@
//--------------------------------------------------------
class MicroProblem
{
- private:
- static const int dim = 3;
- using CellGridType = Dune::YaspGrid<dim, Dune::EquidistantOffsetCoordinates<double, dim> >;
- using GridView = typename CellGridType::LeafGridView;
- // typedef typename Dune::Functions::DefaultGlobalBasis<Dune::Functions::PowerPreBasis<Dune::Functions::BasisFactory::FlatLexicographic, \
- // Dune::Functions::Experimental::TransformedIndexPreBasis<Dune::Functions::LagrangePreBasis<Dune::GridView< \
- // Dune::DefaultLeafGridViewTraits<const Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, dim> > > >, 1, double>, \
- // Dune::Functions::BasisFactory::Experimental::Impl::PeriodicIndexingTransformation>, dim> > BasisType;
-
-
- using BasisType = typename Dune::Functions::DefaultGlobalBasis<Dune::Functions::PowerPreBasis<Dune::Functions::BasisFactory::FlatLexicographic, \
- Dune::Functions::Experimental::TransformedIndexPreBasis<Dune::Functions::LagrangePreBasis<Dune::GridView< \
- Dune::DefaultLeafGridViewTraits<const Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, dim> > > >, 1, double>, \
- Dune::Functions::BasisFactory::Experimental::Impl::PeriodicIndexingTransformation>, dim> >;
-
- using MaterialType = prestrainedMaterial<GridView>;
-
-
- Python::Reference microstructure_;
- const Dune::ParameterTree parameterSet_;
- const Python::Module module_;
- const CellGridType grid_;
- const GridView gridView_;
- const BasisType basis_;
- // Dune::ParameterTree parameterSet_;
- // Python::Module module_;
- // CellGridType grid_;
- // GridView gridView_;
- // BasisType basis_;
-
-
- // std::fstream log_; // deprecated: only used to define CorrectorComputer object.
-
-
- // MaterialType material_;
- std::shared_ptr<MaterialType> material_;
-
- // CorrectorComputer<BasisType, MaterialType> correctorComputer_;
- std::shared_ptr<CorrectorComputer<BasisType, MaterialType> > correctorComputer_;
- EffectiveQuantitiesComputer<BasisType,MaterialType> effectiveQuantitiesComputer_;
-
-
-
- public:
-
-
- //Constructor
- MicroProblem(const Python::Reference microstructure,
- const Dune::ParameterTree& parameterSet,
- const Python::Module pyModule)
- : microstructure_(microstructure),
- parameterSet_(parameterSet),
- module_(pyModule),
- grid_(createGrid()),
- gridView_(grid_.leafGridView()),
- basis_(createPeriodicBasis()),
- // material_(setupMaterial(gridView_))
- // material_(gridView_,microstructure_,parameterSet_,module_),
- material_(std::make_shared<MaterialType>(gridView_,microstructure_,parameterSet_,module_)),
- correctorComputer_(std::make_shared<CorrectorComputer<BasisType, MaterialType>>(basis_, material_, parameterSet_)),
- // correctorComputer_(basis_, material_, parameterSet_),
- effectiveQuantitiesComputer_(correctorComputer_)
- // effectiveQuantitiesComputer_(correctorComputer_,material_) // Remove material dependency
- {};
- // //Constructor
- // MicroProblem(const Dune::ParameterTree& parameterSet,
- // Python::Module pyModule)
- // : parameterSet_(parameterSet),
- // module_(pyModule),
- // grid_(createGrid()),
- // gridView_(grid_.leafGridView()),
- // basis_(createPeriodicBasis())
- // {
- // initialSetup();
- // };
-
-
- // Create a default constructor like this?
- // MicroProblem() = default;
-
-
- // MaterialType setupMaterial(const GridView& gridView) const
- // {
- // return MaterialType(gridView,microstructure_,parameterSet_,module_);
- // }
-
-
-
- /**
- * @brief Infrastructure for handling periodicity.
- * Check whether two points are equal on R/Z x R/Z x R
- */
- static constexpr auto equivalent = [](const Dune::FieldVector<double,3>& x, const Dune::FieldVector<double,3>& y)
+private:
+ static const int dim = 3;
+ using CellGridType = Dune::YaspGrid<dim, Dune::EquidistantOffsetCoordinates<double, dim> >;
+ using GridView = typename CellGridType::LeafGridView;
+ // typedef typename Dune::Functions::DefaultGlobalBasis<Dune::Functions::PowerPreBasis<Dune::Functions::BasisFactory::FlatLexicographic, \
+ // Dune::Functions::Experimental::TransformedIndexPreBasis<Dune::Functions::LagrangePreBasis<Dune::GridView< \
+ // Dune::DefaultLeafGridViewTraits<const Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, dim> > > >, 1, double>, \
+ // Dune::Functions::BasisFactory::Experimental::Impl::PeriodicIndexingTransformation>, dim> > BasisType;
+
+
+ using BasisType = typename Dune::Functions::DefaultGlobalBasis<Dune::Functions::PowerPreBasis<Dune::Functions::BasisFactory::FlatLexicographic, \
+ Dune::Functions::Experimental::TransformedIndexPreBasis<Dune::Functions::LagrangePreBasis<Dune::GridView< \
+ Dune::DefaultLeafGridViewTraits<const Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, dim> > > >, 1, double>, \
+ Dune::Functions::BasisFactory::Experimental::Impl::PeriodicIndexingTransformation>, dim> >;
+
+ using MaterialType = prestrainedMaterial<GridView>;
+
+
+ Python::Reference microstructure_;
+ const Dune::ParameterTree parameterSet_;
+ const Python::Module module_;
+ const CellGridType grid_;
+ const GridView gridView_;
+ const BasisType basis_;
+ // Dune::ParameterTree parameterSet_;
+ // Python::Module module_;
+ // CellGridType grid_;
+ // GridView gridView_;
+ // BasisType basis_;
+
+
+ // std::fstream log_; // deprecated: only used to define CorrectorComputer object.
+
+
+ // MaterialType material_;
+ std::shared_ptr<MaterialType> material_;
+
+ // CorrectorComputer<BasisType, MaterialType> correctorComputer_;
+ std::shared_ptr<CorrectorComputer<BasisType, MaterialType> > correctorComputer_;
+ EffectiveQuantitiesComputer<BasisType,MaterialType> effectiveQuantitiesComputer_;
+
+
+
+public:
+
+
+ //Constructor
+ MicroProblem(const Python::Reference microstructure,
+ const Dune::ParameterTree& parameterSet,
+ const Python::Module pyModule)
+ : microstructure_(microstructure),
+ parameterSet_(parameterSet),
+ module_(pyModule),
+ grid_(createGrid()),
+ gridView_(grid_.leafGridView()),
+ basis_(createPeriodicBasis()),
+ // material_(setupMaterial(gridView_))
+ // material_(gridView_,microstructure_,parameterSet_,module_),
+ material_(std::make_shared<MaterialType>(gridView_,microstructure_,parameterSet_,module_)),
+ correctorComputer_(std::make_shared<CorrectorComputer<BasisType, MaterialType> >(basis_, material_, parameterSet_)),
+ // correctorComputer_(basis_, material_, parameterSet_),
+ effectiveQuantitiesComputer_(correctorComputer_)
+ // effectiveQuantitiesComputer_(correctorComputer_,material_) // Remove material dependency
+ {};
+ // //Constructor
+ // MicroProblem(const Dune::ParameterTree& parameterSet,
+ // Python::Module pyModule)
+ // : parameterSet_(parameterSet),
+ // module_(pyModule),
+ // grid_(createGrid()),
+ // gridView_(grid_.leafGridView()),
+ // basis_(createPeriodicBasis())
+ // {
+ // initialSetup();
+ // };
+
+
+ // Create a default constructor like this?
+ // MicroProblem() = default;
+
+
+ // MaterialType setupMaterial(const GridView& gridView) const
+ // {
+ // return MaterialType(gridView,microstructure_,parameterSet_,module_);
+ // }
+
+
+
+ /**
+ * @brief Infrastructure for handling periodicity.
+ * Check whether two points are equal on R/Z x R/Z x R
+ */
+ static constexpr auto equivalent = [](const Dune::FieldVector<double,3>& x, const Dune::FieldVector<double,3>& y)
+ {
+ return ( (Dune::FloatCmp::eq(x[0],y[0]) or Dune::FloatCmp::eq(x[0]+1,y[0]) or Dune::FloatCmp::eq(x[0]-1,y[0]))
+ and (Dune::FloatCmp::eq(x[1],y[1]) or Dune::FloatCmp::eq(x[1]+1,y[1]) or Dune::FloatCmp::eq(x[1]-1,y[1]))
+ and (Dune::FloatCmp::eq(x[2],y[2]))
+ );
+ };
+
+
+ /**
+ * @brief Generate the grid.
+ * Corrector Problem Domain (-1/2,1/2)^3.
+ */
+ const CellGridType createGrid() const
+ {
+ Dune::FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
+ Dune::FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
+ int microGridLevel = parameterSet_.get<int>("microGridLevel", 0);
+ std::array<int, dim> nElements = {(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel)};
+ // std::cout << "Number of Grid-Elements in each direction: " << nElements << std::endl;
+ std::cout << "Number of Micro Grid-Elements in each direction: " << (int)std::pow(2,microGridLevel) << std::endl;
+
+ return CellGridType(lower,upper,nElements);
+ }
+
+ const BasisType createPeriodicBasis() const
+ {
+ // using namespace Functions::BasisFactory;
+ Dune::Functions::BasisFactory::Experimental::PeriodicIndexSet periodicIndices;
+
+ //--- Get PeriodicIndices for periodicBasis (Don't do the following in real life: It has quadratic run-time in the number of vertices.)
+ for (const auto& v1 : vertices(gridView_))
+ for (const auto& v2 : vertices(gridView_))
+ if (equivalent(v1.geometry().corner(0), v2.geometry().corner(0)))
{
- return ( (Dune::FloatCmp::eq(x[0],y[0]) or Dune::FloatCmp::eq(x[0]+1,y[0]) or Dune::FloatCmp::eq(x[0]-1,y[0]))
- and (Dune::FloatCmp::eq(x[1],y[1]) or Dune::FloatCmp::eq(x[1]+1,y[1]) or Dune::FloatCmp::eq(x[1]-1,y[1]))
- and (Dune::FloatCmp::eq(x[2],y[2]))
- );
- };
-
-
- /**
- * @brief Generate the grid.
- * Corrector Problem Domain (-1/2,1/2)^3.
- */
- const CellGridType createGrid() const
- {
- Dune::FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
- Dune::FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
- int microGridLevel = parameterSet_.get<int>("microGridLevel", 0);
- std::array<int, dim> nElements = {(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel)};
- // std::cout << "Number of Grid-Elements in each direction: " << nElements << std::endl;
- std::cout << "Number of Micro Grid-Elements in each direction: " << (int)std::pow(2,microGridLevel) << std::endl;
-
- return CellGridType(lower,upper,nElements);
+ periodicIndices.unifyIndexPair({gridView_.indexSet().index(v1)}, {gridView_.indexSet().index(v2)});
}
- const BasisType createPeriodicBasis() const
- {
- // using namespace Functions::BasisFactory;
- Dune::Functions::BasisFactory::Experimental::PeriodicIndexSet periodicIndices;
-
- //--- Get PeriodicIndices for periodicBasis (Don't do the following in real life: It has quadratic run-time in the number of vertices.)
- for (const auto& v1 : vertices(gridView_))
- for (const auto& v2 : vertices(gridView_))
- if (equivalent(v1.geometry().corner(0), v2.geometry().corner(0)))
- {
- periodicIndices.unifyIndexPair({gridView_.indexSet().index(v1)}, {gridView_.indexSet().index(v2)});
- }
-
- return makeBasis(gridView_,
- power<dim>(
- Dune::Functions::BasisFactory::Experimental::periodic(lagrange<1>(), periodicIndices),
- flatLexicographic()
- ));
- }
+ return makeBasis(gridView_,
+ power<dim>(
+ Dune::Functions::BasisFactory::Experimental::periodic(lagrange<1>(), periodicIndices),
+ flatLexicographic()
+ ));
+ }
- void updateMicrostructure(Python::Reference microstructure)
- {
- microstructure_ = microstructure;
+ void updateMicrostructure(Python::Reference microstructure)
+ {
+ microstructure_ = microstructure;
- // material_.updateMicrostructure(microstructure_);
- material_->updateMicrostructure(microstructure_);
- correctorComputer_->updateMaterial(material_);
- effectiveQuantitiesComputer_.updateCorrectorComputer(correctorComputer_);
- }
+ // material_.updateMicrostructure(microstructure_);
+ material_->updateMicrostructure(microstructure_);
+ correctorComputer_->updateMaterial(material_);
+ effectiveQuantitiesComputer_.updateCorrectorComputer(correctorComputer_);
+ }
- Python::Reference getMicrostructure()
- {
- return microstructure_;
- }
+ Python::Reference getMicrostructure()
+ {
+ return microstructure_;
+ }
- // template<class Btype,class Qtype>
- // void getEffectiveQuantities(Btype& B, Qtype& Q, int count = 0)
- template<class Btype,class Qtype>
- void getEffectiveQuantities(Btype& B, Qtype& Q)
- {
- Dune::Timer microProblemTimer;
- // std::cout << "getting effective quantities.. " << std::endl;
+ // template<class Btype,class Qtype>
+ // void getEffectiveQuantities(Btype& B, Qtype& Q, int count = 0)
+ template<class Btype,class Qtype>
+ void getEffectiveQuantities(Btype& B, Qtype& Q)
+ {
+ Dune::Timer microProblemTimer;
+ // std::cout << "getting effective quantities.. " << std::endl;
- // --- Get scale ratio
- // double gamma = parameterSet_.get<double>("gamma",1.0);
- double gamma;
- microstructure_.get("gamma").toC<double>(gamma);
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- std::cout << "Microstructure scale ratio (gamma) set to : " << gamma << std::endl;
+ // --- Get scale ratio
+ // double gamma = parameterSet_.get<double>("gamma",1.0);
+ double gamma;
+ microstructure_.get("gamma").toC<double>(gamma);
+ if (parameterSet_.get<bool>("printMicroOutput ", false))
+ std::cout << "Microstructure scale ratio (gamma) set to : " << gamma << std::endl;
- // /**
- // * @brief Create Log (Remove later)
- // *
- // */
- // std::string baseName = parameterSet_.get("baseName", "CellProblem-result");
- // std::string outputPath = parameterSet_.get("resultPath", "../../outputs") ;
- // //--- setup Log-File
- // std::fstream log;
- // log.open(outputPath + "/" + baseName + "_log.txt" ,std::ios::out);
+ // /**
+ // * @brief Create Log (Remove later)
+ // *
+ // */
+ // std::string baseName = parameterSet_.get("baseName", "CellProblem-result");
+ // std::string outputPath = parameterSet_.get("resultPath", "../../outputs") ;
+ // //--- setup Log-File
+ // std::fstream log;
+ // log.open(outputPath + "/" + baseName + "_log.txt" ,std::ios::out);
- // std::cout << "log done" << std::endl;
-
- // // Create prestrained material object
- // auto material = prestrainedMaterial(basis_.gridView(),microstructure_,parameterSet_,module_);
+ // std::cout << "log done" << std::endl;
+ // // Create prestrained material object
+ // auto material = prestrainedMaterial(basis_.gridView(),microstructure_,parameterSet_,module_);
- // std::cout << "type_name<decltype(material_)>():" << type_name<decltype(material_)>() << std::endl;
- // std::cout << "type_name<decltype(material)>():" << type_name<decltype(material)>() << std::endl;
+ // std::cout << "type_name<decltype(material_)>():" << type_name<decltype(material_)>() << std::endl;
+ // std::cout << "type_name<decltype(material)>():" << type_name<decltype(material)>() << std::endl;
- // // std::cout << "TEST-VTK write.." << std::endl;
- // material.writeVTKMaterialFunctions(parameterSet_.get<int>("microGridLevel", 0));
- // std::cout << "Part1 works." << std::endl;
+ // // std::cout << "TEST-VTK write.." << std::endl;
+ // material.writeVTKMaterialFunctions(parameterSet_.get<int>("microGridLevel", 0));
+ // std::cout << "Part1 works." << std::endl;
- if (parameterSet_.get<bool>("write_materialFunctions", false))
- material_->writeVTKMaterialFunctions(parameterSet_.get<int>("microGridLevel", 0));
- // exit(0);
+ if (parameterSet_.get<bool>("write_materialFunctions", false))
+ material_->writeVTKMaterialFunctions(parameterSet_.get<int>("microGridLevel", 0));
- // std::cout << "Material setup done" << std::endl;
+ // exit(0);
- // // Compute Correctors
- // auto correctorComputer = CorrectorComputer(basis_, material, log, parameterSet_);
- // #if 0
+ // std::cout << "Material setup done" << std::endl;
- // std::cout << "Starting Corrector assembly" << std::endl;
- correctorComputer_->assemble();
- // std::cout << "Starting Corrector solve..." << std::endl;
- correctorComputer_->solve();
+ // // Compute Correctors
+ // auto correctorComputer = CorrectorComputer(basis_, material, log, parameterSet_);
+ // #if 0
+ // std::cout << "Starting Corrector assembly" << std::endl;
+ correctorComputer_->assemble();
+ // std::cout << "Starting Corrector solve..." << std::endl;
+ correctorComputer_->solve();
- // std::cout << "Corrector done" << std::endl;
- // //--- Compute effective quantities
- // auto effectiveQuantitiesComputer = EffectiveQuantitiesComputer(correctorComputer,material);
- effectiveQuantitiesComputer_.computeEffectiveQuantities();
+ // std::cout << "Corrector done" << std::endl;
+ // //--- Compute effective quantities
+ // auto effectiveQuantitiesComputer = EffectiveQuantitiesComputer(correctorComputer,material);
+ effectiveQuantitiesComputer_.computeEffectiveQuantities();
- // std::cout << "effective Quantities done" << std::endl;
- // //--- Get effective quantities
- auto Beffvec = effectiveQuantitiesComputer_.getBeff();
- // // convert CoefficientVector to matrix
- auto Beff = CoefficientsToSymMatrix(Beffvec);
- Q = effectiveQuantitiesComputer_.getQeff();
- B = CoefficientsToSymMatrix(Beffvec);
+ // std::cout << "effective Quantities done" << std::endl;
+ // //--- Get effective quantities
+ auto Beffvec = effectiveQuantitiesComputer_.getBeff();
+ // // convert CoefficientVector to matrix
+ auto Beff = CoefficientsToSymMatrix(Beffvec);
+ Q = effectiveQuantitiesComputer_.getQeff();
+ B = CoefficientsToSymMatrix(Beffvec);
- if (parameterSet_.get<bool>("printMicroOutput ", false))
- {
- printmatrix(std::cout, Q, "Matrix Qeff", "--");
- printmatrix(std::cout, B, "Beff", "--");
- }
- std::cout << "Micro-Problem took " << microProblemTimer.elapsed() << " seconds." << std::endl;
+ if (parameterSet_.get<bool>("printMicroOutput ", false))
+ {
+ printmatrix(std::cout, Q, "Matrix Qeff", "--");
+ printmatrix(std::cout, B, "Beff", "--");
+ }
- // #endif
+ std::cout << "Micro-Problem took " << microProblemTimer.elapsed() << " seconds." << std::endl;
- // exit(0);
- }
+ // #endif
+
+ // exit(0);
+ }
};
-#endif
\ No newline at end of file
+#endif
diff --git a/dune/microstructure/prestrainedMaterial.hh b/dune/microstructure/prestrainedMaterial.hh
index 008952bde46cf19fef09e092a8f29c8e60d01ab4..2e2f5460ff3883d5ca7048c1880b1f6c181fc2fb 100644
--- a/dune/microstructure/prestrainedMaterial.hh
+++ b/dune/microstructure/prestrainedMaterial.hh
@@ -37,13 +37,13 @@ using std::make_shared;
* @brief The 'prestrainedMaterial' class descripes the LOCAL microstructure.
* It stores all the necessary information to define the local Cell-problem.
* This includes:
- *
+ *
* Indicatorfunction, #Phases, Prestrain, elasticity/compliance tensors ,scale-ratio 'gamma'
- *
+ *
*/
-//--------------------------------------------------------
-template <class GridView>
+//--------------------------------------------------------
+template <class GridView>
class prestrainedMaterial
{
@@ -56,16 +56,16 @@ public:
using ScalarRT = Dune::FieldVector< double, 1>;
using VectorRT = Dune::FieldVector< double, dimworld>;
using MatrixRT = Dune::FieldMatrix< double, dimworld, dimworld>;
- using FuncScalar = std::function< double(const Domain&) >;
- using Func2int = std::function< int(const Domain&) >;
+ using FuncScalar = std::function< double (const Domain&) >;
+ using Func2int = std::function< int (const Domain&) >;
using Func2Tensor = std::function< MatrixRT(const Domain&) >;
using Func2TensorParam = std::function< MatrixRT(const MatrixRT& ,const Domain&) >;
using Func2TensorPhase = std::function< MatrixRT(const MatrixRT& ,const int&) >;
using MatrixFunc = std::function< MatrixRT(const MatrixRT&) >;
using MatrixPhase = std::function< MatrixRT(const int&) >;
- using IndicatorGridViewFunctionType = GridViewFunction<int(const Domain&), GridView>;
- using LocalIndicatorFunctionType = LocalFunction<int(const Domain&), typename GridViewEntitySet<GridView, 0>::Element >;
+ using IndicatorGridViewFunctionType = GridViewFunction<int (const Domain&), GridView>;
+ using LocalIndicatorFunctionType = LocalFunction<int (const Domain&), typename GridViewEntitySet<GridView, 0>::Element >;
// const GridView& gridView_;
@@ -91,169 +91,169 @@ public:
IndicatorGridViewFunctionType indicatorFunctionGVF_;
LocalIndicatorFunctionType localIndicatorFunction_;
- double gamma_;
+ double gamma_;
-public:
- prestrainedMaterial(const GridView& gridView,
- Python::Reference microstructure,
- const Dune::ParameterTree& parameterSet,
- const Python::Module pyModule)
- : gridView_(gridView),
- microstructure_(microstructure),
- parameterSet_(parameterSet),
- module_(pyModule)
- {
- setup();
- }
- ~prestrainedMaterial(){std::cout << "prestrainedMaterial object destroyed!" << std::endl;};
-
- // prestrainedMaterial() = default;
-
- //copy constructor
- prestrainedMaterial(const prestrainedMaterial& that) = default;
-
- // Copy assignment operator
- // prestrainedMaterial& operator=(prestrainedMaterial const& that)
- // {
- // gridView_ = that.gridView_;
- // parameterSet_ = that.parameterSet_;
- // L_ = that.L_;
- // prestrain_ = that.prestrain_;
- // module_ = that.module_;
- // microstructure_ = that.microstructure_;
-
- // return *this;
- // }
-
-
- void updateMicrostructure(const Python::Reference microstructure)
+public:
+ prestrainedMaterial(const GridView& gridView,
+ Python::Reference microstructure,
+ const Dune::ParameterTree& parameterSet,
+ const Python::Module pyModule)
+ : gridView_(gridView),
+ microstructure_(microstructure),
+ parameterSet_(parameterSet),
+ module_(pyModule)
{
- // std::cout << "updateMicrostrucrue of prestrainedMaterial" << std::endl;
- microstructure_ = microstructure;
+ setup();
}
+ ~prestrainedMaterial(){std::cout << "prestrainedMaterial object destroyed!" << std::endl;};
+ // prestrainedMaterial() = default;
- void updateGamma(const double gamma)
- {
- gamma_ = gamma;
- }
+ //copy constructor
+ prestrainedMaterial(const prestrainedMaterial& that) = default;
+ // Copy assignment operator
+ // prestrainedMaterial& operator=(prestrainedMaterial const& that)
+ // {
+ // gridView_ = that.gridView_;
+ // parameterSet_ = that.parameterSet_;
+ // L_ = that.L_;
+ // prestrain_ = that.prestrain_;
+ // module_ = that.module_;
+ // microstructure_ = that.microstructure_;
-/**
- * @brief TODO: Code allows a spatially varying prestrain. However most of the time we only
- * use a constant prestrain.
- * - Add switch (constant/non-constant) prestrain?
- *
- * @param phase material phase
- * @return Func2Tensor
- */
-Func2Tensor setupPrestrainPhase(const int phase){
-
- // auto prestrain = Python::make_function<MatrixRT>(module_.get("prestrain_phase" + std::to_string(phase)));
- auto prestrain = Python::make_function<MatrixRT>(Python::Callable(microstructure_.get("prestrain_phase" + std::to_string(phase))));
+ // return *this;
+ // }
- //TODO...
- int axis = 0;
- double angle = 0;
- try
+ void updateMicrostructure(const Python::Reference microstructure)
{
- // module_.get("phase" + std::to_string(phase) + "_axis").toC<int>(axis);
- // module_.get("phase" + std::to_string(phase) + "_angle").toC<double>(angle);
- axis = parameterSet_.get<int>("phase" + std::to_string(phase) + "_axis", 0);
- angle = parameterSet_.get<double>("phase" + std::to_string(phase) + "_angle", 0);
+ // std::cout << "updateMicrostrucrue of prestrainedMaterial" << std::endl;
+ microstructure_ = microstructure;
}
- catch(Dune::Exception&)
+
+
+ void updateGamma(const double gamma)
{
- //default frame is used.
+ gamma_ = gamma;
}
+
+
/**
- * @brief (optional) Tramsform prestrain to the correct frame.
+ * @brief TODO: Code allows a spatially varying prestrain. However most of the time we only
+ * use a constant prestrain.
+ * - Add switch (constant/non-constant) prestrain?
+ *
+ * @param phase material phase
+ * @return Func2Tensor
*/
- if(abs(angle) > 1e-12){
- auto R = rotationMatrix(axis,angle);
- Func2Tensor f = [prestrain,R] (const Domain& x) { return (prestrain(x).leftmultiply(R)).rightmultiply(R.transposed()); };
+ Func2Tensor setupPrestrainPhase(const int phase){
+
+ // auto prestrain = Python::make_function<MatrixRT>(module_.get("prestrain_phase" + std::to_string(phase)));
+ auto prestrain = Python::make_function<MatrixRT>(Python::Callable(microstructure_.get("prestrain_phase" + std::to_string(phase))));
- return f;
+ //TODO...
+
+ int axis = 0;
+ double angle = 0;
+ try
+ {
+ // module_.get("phase" + std::to_string(phase) + "_axis").toC<int>(axis);
+ // module_.get("phase" + std::to_string(phase) + "_angle").toC<double>(angle);
+ axis = parameterSet_.get<int>("phase" + std::to_string(phase) + "_axis", 0);
+ angle = parameterSet_.get<double>("phase" + std::to_string(phase) + "_angle", 0);
+ }
+ catch(Dune::Exception&)
+ {
+ //default frame is used.
+ }
+ /**
+ * @brief (optional) Tramsform prestrain to the correct frame.
+ */
+ if(abs(angle) > 1e-12) {
+ auto R = rotationMatrix(axis,angle);
+ Func2Tensor f = [prestrain,R] (const Domain& x) { return (prestrain(x).leftmultiply(R)).rightmultiply(R.transposed()); };
+
+ return f;
+ }
+ else
+ return prestrain;
}
- else
- return prestrain;
-}
-// Dune::FieldMatrix<double,6,6> setupPhase(const std::string phaseType, Python::Module module, int phase)
-Dune::FieldMatrix<double,6,6> setupPhase(const int phase)
-{
- std::string phaseType;
+ // Dune::FieldMatrix<double,6,6> setupPhase(const std::string phaseType, Python::Module module, int phase)
+ Dune::FieldMatrix<double,6,6> setupPhase(const int phase)
+ {
+ std::string phaseType;
- // phaseType = parameterSet_.get<std::string>("phase" + std::to_string(phase) + "_type");
- microstructure_.get("phase" + std::to_string(phase) + "_type").toC<std::string>(phaseType);
+ // phaseType = parameterSet_.get<std::string>("phase" + std::to_string(phase) + "_type");
+ microstructure_.get("phase" + std::to_string(phase) + "_type").toC<std::string>(phaseType);
- std::cout << "Setup phase "<< phase << " as " << phaseType << " material." << std::endl;
+ std::cout << "Setup phase "<< phase << " as " << phaseType << " material." << std::endl;
- if(phaseType == "isotropic")
- {
+ if(phaseType == "isotropic")
+ {
Dune::FieldVector<double,2> materialParameters(0);
// module_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,2>>(materialParameters);
- microstructure_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,2>>(materialParameters);
+ microstructure_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,2> >(materialParameters);
std::cout << "Lame-Parameters (mu,lambda): (" << materialParameters[0] << "," << materialParameters[1] << ") " << std::endl;
return isotropic(materialParameters[0],materialParameters[1]);
- }
+ }
- /**
- * @brief For other material classes. The stiffness-/compliance matrix depends on the
- * coordinate frame.
- *
- * (optional) rotate material coordinate frame by an 'angle' around 'axis'
- */
- int axis = 0;
- double angle = 0;
+ /**
+ * @brief For other material classes. The stiffness-/compliance matrix depends on the
+ * coordinate frame.
+ *
+ * (optional) rotate material coordinate frame by an 'angle' around 'axis'
+ */
+ int axis = 0;
+ double angle = 0;
- try
- {
- // axis = parameterSet_.get<int>("phase" + std::to_string(phase) + "_axis", 0);
- // angle = parameterSet_.get<double>("phase" + std::to_string(phase) + "_angle", 0);
- microstructure_.get("phase" + std::to_string(phase) + "_axis").toC<int>(axis);
- microstructure_.get("phase" + std::to_string(phase) + "_angle").toC<double>(angle);
- }
- catch(Dune::Exception& e)
- {
- std::cout << "(Could not read rotation axis & angle for material phase) " << phase << ": - Canonical Frame (default) is used." << std::endl;
- }
+ try
+ {
+ // axis = parameterSet_.get<int>("phase" + std::to_string(phase) + "_axis", 0);
+ // angle = parameterSet_.get<double>("phase" + std::to_string(phase) + "_angle", 0);
+ microstructure_.get("phase" + std::to_string(phase) + "_axis").toC<int>(axis);
+ microstructure_.get("phase" + std::to_string(phase) + "_angle").toC<double>(angle);
+ }
+ catch(Dune::Exception& e)
+ {
+ std::cout << "(Could not read rotation axis & angle for material phase) " << phase << ": - Canonical Frame (default) is used." << std::endl;
+ }
- if(phaseType == "orthotropic")
- {
+ if(phaseType == "orthotropic")
+ {
Dune::FieldVector<double,9> materialParameters(0);
// module_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,9>>(materialParameters);
- microstructure_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,9>>(materialParameters);
+ microstructure_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,9> >(materialParameters);
return orthotropic(axis,angle,materialParameters);
- }
- if(phaseType == "transversely_isotropic")
- {
+ }
+ if(phaseType == "transversely_isotropic")
+ {
Dune::FieldVector<double,5> materialParameters(0);
// module_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,5>>(materialParameters);
- microstructure_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,5>>(materialParameters);
+ microstructure_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,5> >(materialParameters);
return transversely_isotropic(axis,angle,materialParameters);
- }
- if(phaseType == "general_anisotropic")
- {
+ }
+ if(phaseType == "general_anisotropic")
+ {
Dune::FieldMatrix<double,6,6> materialParameters(0); //compliance matric
// module_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldMatrix<double,6,6>>(materialParameters);
- microstructure_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldMatrix<double,6,6>>(materialParameters);
+ microstructure_.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldMatrix<double,6,6> >(materialParameters);
return general_anisotropic(axis,angle,materialParameters);
+ }
+ else
+ DUNE_THROW(Dune::Exception, " Unknown material class for phase " + std::to_string(phase));
}
- else
- DUNE_THROW(Dune::Exception, " Unknown material class for phase " + std::to_string(phase));
-}
/**
* @brief Setup method that determines the correct stiffness-matrix (constitutive law)
- * for each material phase separately.
- *
+ * for each material phase separately.
+ *
*/
void setup()
{
@@ -269,7 +269,7 @@ Dune::FieldMatrix<double,6,6> setupPhase(const int phase)
localIndicatorFunction_ = localFunction(indicatorFunctionGVF_);
int phases;
- // phases = parameterSet_.get<int>("Phases");
+ // phases = parameterSet_.get<int>("Phases");
microstructure_.get("phases").toC<int>(phases);
std::cout << "---- Starting material setup... (Number of Phases: "<< phases << ") " << std::endl;
@@ -292,13 +292,13 @@ Dune::FieldMatrix<double,6,6> setupPhase(const int phase)
/** \brief Isotropic stiffness matrix in Voigt notation but scaled by a factor of 2 in the last three columns. */
Dune::FieldMatrix<double,6,6> isotropic(const double& mu, const double& lambda)
{
- return {{lambda+2.0*mu, lambda , lambda , 0.0 , 0.0 , 0.0 },
- {lambda , lambda+2.0*mu, lambda , 0.0 , 0.0 , 0.0 },
- {lambda , lambda , lambda+2.0*mu, 0.0 , 0.0 , 0.0 },
- { 0.0 , 0.0 , 0.0 , 2.0*mu, 0.0 , 0.0 },
- { 0.0 , 0.0 , 0.0 , 0.0 , 2.0*mu, 0.0 },
- { 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 2.0*mu }
- };
+ return {{lambda+2.0*mu, lambda , lambda , 0.0 , 0.0 , 0.0 },
+ {lambda , lambda+2.0*mu, lambda , 0.0 , 0.0 , 0.0 },
+ {lambda , lambda , lambda+2.0*mu, 0.0 , 0.0 , 0.0 },
+ { 0.0 , 0.0 , 0.0 , 2.0*mu, 0.0 , 0.0 },
+ { 0.0 , 0.0 , 0.0 , 0.0 , 2.0*mu, 0.0 },
+ { 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 2.0*mu }
+ };
}
//-------------------------------------------------------------------------------
@@ -308,74 +308,74 @@ Dune::FieldMatrix<double,6,6> setupPhase(const int phase)
* The convention in literature is to provide the elastic constants in form of the 'compliance matrix'
* In order to compute stresses from strain, we have to invert the 'compliance matrix' to obtain the 'stiffness matrix'
* (see https://en.wikipedia.org/wiki/Orthotropic_material for more details)
- *
+ *
* @param axis rotate material frame around axis
- * @param angle rotation angle
+ * @param angle rotation angle
* @param p elastic constants: (E1,E2,E3,G12,G23,G31,nu12,nu13,nu23)
* @return Stiffness matrix
*/
Dune::FieldMatrix<double,6,6> orthotropic(const int& axis,
const double& angle,
const Dune::FieldVector<double,9>& p
- )
+ )
{
- auto E_1 = p[0];
- auto E_2 = p[1];
- auto E_3 = p[2];
- auto G_12 = p[3];
- auto G_23 = p[4];
- auto G_31 = p[5];
- auto nu_12 = p[6];
- auto nu_13 = p[7];
- auto nu_23 = p[8];
- //other three poisson ratios are not independent
- auto nu_21 = (p[6]/p[0])*p[1];
- auto nu_31 = (p[7]/p[0])*p[2];
- auto nu_32 = (p[8]/p[1])*p[2];
-
- std::string axis_string;
- switch (axis)
- {
- case 0:
- axis_string = "x - axis";
- break;
- case 1:
- axis_string = "y - axis";
- break;
- case 2:
- axis_string = "z - axis";
- break;
- default: break;
- }
-
- // Compliance matrix
- Dune::FieldMatrix<double,6,6> Compliance = {{1.0/E_1 , -nu_21/E_2 , -nu_31/E_3 , 0.0 , 0.0 , 0.0 },
- {-nu_12/E_1 , 1.0/E_2 , -nu_32/E_3 , 0.0 , 0.0 , 0.0 },
- {-nu_13/E_1 , -nu_23/E_2 , 1.0/E_3 , 0.0 , 0.0 , 0.0 },
- { 0.0 , 0.0 , 0.0 , 1.0/G_23, 0.0 , 0.0 },
- { 0.0 , 0.0 , 0.0 , 0.0 , 1.0/G_31, 0.0 },
- { 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 1.0/G_12}
- };
-
-
- /**
- * @brief (optional) Tramsform compliance matrix to the correct frame.
- */
- if(abs(angle) > 1e-12){
- std::cout << "material frame rotated around axis: " << axis_string << " by an angle of: " << angle << std::endl;
- Dune::FieldMatrix<double,6,6> C_rot = rotationMatrixCompliance(axis,angle);
- (Compliance.leftmultiply(C_rot)).rightmultiply(C_rot.transposed());
- }
-
- printmatrix(std::cout, Compliance, "Compliance matrix used:", "--");
-
- // invert Compliance matrix to obtain elasticity/stiffness matrix
- Compliance.invert();
- // printmatrix(std::cout, Compliance, "Stiffness Tensor", "--");
- scaleStiffnessMatrix(Compliance);
- // printmatrix(std::cout, Compliance, "Stiffness Tensor scaled", "--");
- // printmatrix(std::cout, Compliance, "Stiffness Tensor", "--");
- return Compliance;
+ auto E_1 = p[0];
+ auto E_2 = p[1];
+ auto E_3 = p[2];
+ auto G_12 = p[3];
+ auto G_23 = p[4];
+ auto G_31 = p[5];
+ auto nu_12 = p[6];
+ auto nu_13 = p[7];
+ auto nu_23 = p[8];
+ //other three poisson ratios are not independent
+ auto nu_21 = (p[6]/p[0])*p[1];
+ auto nu_31 = (p[7]/p[0])*p[2];
+ auto nu_32 = (p[8]/p[1])*p[2];
+
+ std::string axis_string;
+ switch (axis)
+ {
+ case 0 :
+ axis_string = "x - axis";
+ break;
+ case 1 :
+ axis_string = "y - axis";
+ break;
+ case 2 :
+ axis_string = "z - axis";
+ break;
+ default : break;
+ }
+
+ // Compliance matrix
+ Dune::FieldMatrix<double,6,6> Compliance = {{1.0/E_1 , -nu_21/E_2 , -nu_31/E_3 , 0.0 , 0.0 , 0.0 },
+ {-nu_12/E_1 , 1.0/E_2 , -nu_32/E_3 , 0.0 , 0.0 , 0.0 },
+ {-nu_13/E_1 , -nu_23/E_2 , 1.0/E_3 , 0.0 , 0.0 , 0.0 },
+ { 0.0 , 0.0 , 0.0 , 1.0/G_23, 0.0 , 0.0 },
+ { 0.0 , 0.0 , 0.0 , 0.0 , 1.0/G_31, 0.0 },
+ { 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 1.0/G_12}
+ };
+
+
+ /**
+ * @brief (optional) Tramsform compliance matrix to the correct frame.
+ */
+ if(abs(angle) > 1e-12) {
+ std::cout << "material frame rotated around axis: " << axis_string << " by an angle of: " << angle << std::endl;
+ Dune::FieldMatrix<double,6,6> C_rot = rotationMatrixCompliance(axis,angle);
+ (Compliance.leftmultiply(C_rot)).rightmultiply(C_rot.transposed());
+ }
+
+ printmatrix(std::cout, Compliance, "Compliance matrix used:", "--");
+
+ // invert Compliance matrix to obtain elasticity/stiffness matrix
+ Compliance.invert();
+ // printmatrix(std::cout, Compliance, "Stiffness Tensor", "--");
+ scaleStiffnessMatrix(Compliance);
+ // printmatrix(std::cout, Compliance, "Stiffness Tensor scaled", "--");
+ // printmatrix(std::cout, Compliance, "Stiffness Tensor", "--");
+ return Compliance;
}
//-------------------------------------------------------------------------------
@@ -383,124 +383,124 @@ Dune::FieldMatrix<double,6,6> setupPhase(const int phase)
* @brief Definition of transversely isotropic elasticity tensor (in Voigt notation)
* (see https://en.wikipedia.org/wiki/Poisson%27s_ratio)
* @param axis rotate material frame around axis
- * @param angle rotation angle
+ * @param angle rotation angle
* @param p elastic constants: {E1,E2,G12,nu12,nu23}
* @return Stiffness matrix
*/
Dune::FieldMatrix<double,6,6> transversely_isotropic(const int& axis,
- const double& angle,
- const Dune::FieldVector<double,5>& p
- )
+ const double& angle,
+ const Dune::FieldVector<double,5>& p
+ )
{
// (see https://en.wikipedia.org/wiki/Poisson%27s_ratio)
- auto E_1 = p[0];
- auto E_2 = p[1];
- auto E_3 = E_2;
- auto nu_12 = p[3];
- auto nu_13 = nu_12;
- auto nu_21 = (nu_12/E_1)*E_2;
- auto nu_31 = nu_21;
- auto nu_23 = p[4];
- auto nu_32 = nu_23;
- auto G_12 = p[2];
- auto G_23 = E_2/(2.0*(1+nu_23));
- auto G_31 = G_23;
- //other three poisson ratios are not independent
-
- std::string axis_string;
- switch (axis)
- {
- case 0:
- axis_string = "x - axis";
- break;
- case 1:
- axis_string = "y - axis";
- break;
- case 2:
- axis_string = "z - axis";
- break;
- default: break;
- }
-
- //---compliance matrix
- Dune::FieldMatrix<double,6,6> Compliance = {{1.0/E_1 , -nu_21/E_2 , -nu_31/E_3 , 0.0 , 0.0 , 0.0 },
- {-nu_12/E_1 , 1.0/E_2 , -nu_32/E_3 , 0.0 , 0.0 , 0.0 },
- {-nu_13/E_1 , -nu_23/E_2 , 1.0/E_3 , 0.0 , 0.0 , 0.0 },
- { 0.0 , 0.0 , 0.0 , 1.0/G_23, 0.0 , 0.0 },
- { 0.0 , 0.0 , 0.0 , 0.0 , 1.0/G_31, 0.0 },
- { 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 1.0/G_12}
- };
-
- /**
- * @brief (optional) Tramsform compliance matrix to the correct frame.
- */
- if(abs(angle) > 1e-12){
- // std::cout << "material frame rotated around axis: " << axis << " by an angle of: " << angle << std::endl;
- std::cout << "material frame rotated around axis: " << axis_string << " by an angle of: " << angle << std::endl;
- Dune::FieldMatrix<double,6,6> C_rot = rotationMatrixCompliance(axis,angle);
- (Compliance.leftmultiply(C_rot)).rightmultiply(C_rot.transposed());
- }
-
- printmatrix(std::cout, Compliance, "Compliance matrix used:", "--");
-
- // invert Compliance matrix to obtain elasticity/stiffness matrix
- Compliance.invert();
- // printmatrix(std::cout, Compliance, "Stiffness Tensor", "--");
-
- scaleStiffnessMatrix(Compliance);
-
- return Compliance;
+ auto E_1 = p[0];
+ auto E_2 = p[1];
+ auto E_3 = E_2;
+ auto nu_12 = p[3];
+ auto nu_13 = nu_12;
+ auto nu_21 = (nu_12/E_1)*E_2;
+ auto nu_31 = nu_21;
+ auto nu_23 = p[4];
+ auto nu_32 = nu_23;
+ auto G_12 = p[2];
+ auto G_23 = E_2/(2.0*(1+nu_23));
+ auto G_31 = G_23;
+ //other three poisson ratios are not independent
+
+ std::string axis_string;
+ switch (axis)
+ {
+ case 0 :
+ axis_string = "x - axis";
+ break;
+ case 1 :
+ axis_string = "y - axis";
+ break;
+ case 2 :
+ axis_string = "z - axis";
+ break;
+ default : break;
+ }
+
+ //---compliance matrix
+ Dune::FieldMatrix<double,6,6> Compliance = {{1.0/E_1 , -nu_21/E_2 , -nu_31/E_3 , 0.0 , 0.0 , 0.0 },
+ {-nu_12/E_1 , 1.0/E_2 , -nu_32/E_3 , 0.0 , 0.0 , 0.0 },
+ {-nu_13/E_1 , -nu_23/E_2 , 1.0/E_3 , 0.0 , 0.0 , 0.0 },
+ { 0.0 , 0.0 , 0.0 , 1.0/G_23, 0.0 , 0.0 },
+ { 0.0 , 0.0 , 0.0 , 0.0 , 1.0/G_31, 0.0 },
+ { 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 1.0/G_12}
+ };
+
+ /**
+ * @brief (optional) Tramsform compliance matrix to the correct frame.
+ */
+ if(abs(angle) > 1e-12) {
+ // std::cout << "material frame rotated around axis: " << axis << " by an angle of: " << angle << std::endl;
+ std::cout << "material frame rotated around axis: " << axis_string << " by an angle of: " << angle << std::endl;
+ Dune::FieldMatrix<double,6,6> C_rot = rotationMatrixCompliance(axis,angle);
+ (Compliance.leftmultiply(C_rot)).rightmultiply(C_rot.transposed());
+ }
+
+ printmatrix(std::cout, Compliance, "Compliance matrix used:", "--");
+
+ // invert Compliance matrix to obtain elasticity/stiffness matrix
+ Compliance.invert();
+ // printmatrix(std::cout, Compliance, "Stiffness Tensor", "--");
+
+ scaleStiffnessMatrix(Compliance);
+
+ return Compliance;
}
//-------------------------------------------------------------------------------
/**
* @brief Definition of general anisotropic elasticity tensor (in Voigt notation)
- *
+ *
* @param axis rotate material frame around axis
- * @param angle rotation angle
+ * @param angle rotation angle
* @param Compliance Compliance matrix
* @return Stiffness matrix
- */
+ */
Dune::FieldMatrix<double,6,6> general_anisotropic(const int& axis,
const double& angle,
Dune::FieldMatrix<double,6,6>& Compliance
- )
+ )
{
- std::string axis_string;
- switch (axis)
- {
- case 0:
- axis_string = "x - axis";
- break;
- case 1:
- axis_string = "y - axis";
- break;
- case 2:
- axis_string = "z - axis";
- break;
- default: break;
- }
-
- /**
- * @brief (optional) Tramsform compliance matrix to the correct frame.
- */
- if(abs(angle) > 1e-12){
- // std::cout << "material frame rotated around axis: " << axis << " by an angle of: " << angle << std::endl;
- std::cout << "material frame rotated around axis: " << axis_string << " by an angle of: " << angle << std::endl;
- Dune::FieldMatrix<double,6,6> C_rot = rotationMatrixCompliance(axis,angle);
- (Compliance.leftmultiply(C_rot)).rightmultiply(C_rot.transposed());
- }
- printmatrix(std::cout, Compliance, "Compliance matrix used:", "--");
-
-
- // invert Compliance matrix to obtain elasticity/stiffness matrix
- Compliance.invert();
- // printmatrix(std::cout, Compliance, "Stiffness Tensor", "--");
-
- scaleStiffnessMatrix(Compliance);
-
- return Compliance;
+ std::string axis_string;
+ switch (axis)
+ {
+ case 0 :
+ axis_string = "x - axis";
+ break;
+ case 1 :
+ axis_string = "y - axis";
+ break;
+ case 2 :
+ axis_string = "z - axis";
+ break;
+ default : break;
+ }
+
+ /**
+ * @brief (optional) Tramsform compliance matrix to the correct frame.
+ */
+ if(abs(angle) > 1e-12) {
+ // std::cout << "material frame rotated around axis: " << axis << " by an angle of: " << angle << std::endl;
+ std::cout << "material frame rotated around axis: " << axis_string << " by an angle of: " << angle << std::endl;
+ Dune::FieldMatrix<double,6,6> C_rot = rotationMatrixCompliance(axis,angle);
+ (Compliance.leftmultiply(C_rot)).rightmultiply(C_rot.transposed());
+ }
+ printmatrix(std::cout, Compliance, "Compliance matrix used:", "--");
+
+
+ // invert Compliance matrix to obtain elasticity/stiffness matrix
+ Compliance.invert();
+ // printmatrix(std::cout, Compliance, "Stiffness Tensor", "--");
+
+ scaleStiffnessMatrix(Compliance);
+
+ return Compliance;
}
//-------------------------------------------------------------------------------
@@ -515,7 +515,7 @@ Dune::FieldMatrix<double,6,6> setupPhase(const int phase)
}
- MatrixRT prestrain(const int& phase,const Domain& x) const
+ MatrixRT prestrain(const int& phase,const Domain& x) const
{
return prestrain_[phase-1](x);
}
@@ -527,21 +527,21 @@ Dune::FieldMatrix<double,6,6> setupPhase(const int phase)
}
- ///////////////////////////////
- // Getter
- ///////////////////////////////
- Dune::ParameterTree getParameterSet() const {return parameterSet_;}
- std::vector<VoigtMatrix<double,3>> getElasticityTensor() const {return L_;}
+ ///////////////////////////////
+ // Getter
+ ///////////////////////////////
+ Dune::ParameterTree getParameterSet() const {return parameterSet_;}
+ std::vector<VoigtMatrix<double,3> > getElasticityTensor() const {return L_;}
- MatrixPhase getPrestrainFunction() const {return prestrain_;}
+ MatrixPhase getPrestrainFunction() const {return prestrain_;}
- auto getLocalIndicatorFunction() const {return localIndicatorFunction_;} //get as localFunction
- auto getIndicatorFunctionGVF() const {return indicatorFunctionGVF_;} //get as GridViewFunction
- auto getIndicatorFunction() const {return indicatorFunction_;}
+ auto getLocalIndicatorFunction() const {return localIndicatorFunction_;} //get as localFunction
+ auto getIndicatorFunctionGVF() const {return indicatorFunctionGVF_;} //get as GridViewFunction
+ auto getIndicatorFunction() const {return indicatorFunction_;}
- auto getGamma() const {return gamma_;}
+ auto getGamma() const {return gamma_;}
///////////////////////////////
@@ -551,53 +551,53 @@ Dune::FieldMatrix<double,6,6> setupPhase(const int phase)
/**
* @brief Write material indicator function as a grid function to VTK.
* The Writer uses piecewise constant (P0) interpolation
- *
+ *
* @param level GridLevel
*/
// void writeVTKMaterialFunctions(const int level, double vtkIndex = 1) const
void writeVTKMaterialFunctions(const int level) const
{
- // std::string outputPath = parameterSet_.get("outputPath", "../../outputs");
- std::string resultPath = parameterSet_.get("resultPath", "../../outputs");
- std::string baseName = parameterSet_.get("baseName", "CellProblem-result");
+ // std::string outputPath = parameterSet_.get("outputPath", "../../outputs");
+ std::string resultPath = parameterSet_.get("resultPath", "../../outputs");
+ std::string baseName = parameterSet_.get("baseName", "CellProblem-result");
+
+ int subsamplingRefinement = parameterSet_.get<int>("MaterialSubsamplingRefinement", 2);
+
+ Dune::SubsamplingVTKWriter<GridView> MaterialVtkWriter(gridView_, Dune::refinementLevels(subsamplingRefinement));
- int subsamplingRefinement = parameterSet_.get<int>("MaterialSubsamplingRefinement", 2);
+ MaterialVtkWriter.addCellData(
+ indicatorFunction_,
+ Dune::VTK::FieldInfo("materialIndicatorFunction_", Dune::VTK::FieldInfo::Type::scalar, 1));
- Dune::SubsamplingVTKWriter<GridView> MaterialVtkWriter(gridView_, Dune::refinementLevels(subsamplingRefinement));
-
- MaterialVtkWriter.addCellData(
- indicatorFunction_,
- Dune::VTK::FieldInfo("materialIndicatorFunction_", Dune::VTK::FieldInfo::Type::scalar, 1));
+ MaterialVtkWriter.write(resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level) );
+ std::cout << "wrote data to file:" + resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level) << std::endl;
- MaterialVtkWriter.write(resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level) );
- std::cout << "wrote data to file:" + resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level) << std::endl;
-
- //-- Version using the Dune::VTKSequenceWriter
- // std::shared_ptr<Dune::SubsamplingVTKWriter<GridView> > MaterialVtkWriter = std::make_shared<Dune::SubsamplingVTKWriter<GridView>>(gridView_, Dune::refinementLevels(subsamplingRefinement));
+ //-- Version using the Dune::VTKSequenceWriter
+ // std::shared_ptr<Dune::SubsamplingVTKWriter<GridView> > MaterialVtkWriter = std::make_shared<Dune::SubsamplingVTKWriter<GridView>>(gridView_, Dune::refinementLevels(subsamplingRefinement));
- // MaterialVtkWriter->addCellData(indicatorFunction_,
- // Dune::VTK::FieldInfo("materialIndicatorFunction_", Dune::VTK::FieldInfo::Type::scalar, 1));
+ // MaterialVtkWriter->addCellData(indicatorFunction_,
+ // Dune::VTK::FieldInfo("materialIndicatorFunction_", Dune::VTK::FieldInfo::Type::scalar, 1));
- // Dune::VTKSequenceWriter<GridView> SequenceMaterialVTK(MaterialVtkWriter, resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level));
- // SequenceMaterialVTK.write(vtkIndex);
- // std::cout << "wrote data to file:" + resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level) + "-" + std::to_string(vtkIndex) << std::endl;
+ // Dune::VTKSequenceWriter<GridView> SequenceMaterialVTK(MaterialVtkWriter, resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level));
+ // SequenceMaterialVTK.write(vtkIndex);
+ // std::cout << "wrote data to file:" + resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level) + "-" + std::to_string(vtkIndex) << std::endl;
- //--Version using dune-vtk
- // Dune::Vtk::DiscontinuousDataCollector<GridView> discontinuousDataCollector(gridView_);
- // Dune::Vtk::YaspDataCollector<GridView, 4> yaspDataCollector(gridView_);
- // Dune::Vtk::LagrangeDataCollector<GridView, 4> lagrangeDataCollector(gridView_);
- // Dune::Vtk::UnstructuredGridWriter writer(lagrangeDataCollector, Dune::Vtk::FormatTypes::ASCII, Dune::Vtk::DataTypes::FLOAT32);
- // // Dune::Vtk::UnstructuredGridWriter writer(discontinuousDataCollector, Dune::Vtk::FormatTypes::ASCII, Dune::Vtk::DataTypes::FLOAT32);
+ //--Version using dune-vtk
+ // Dune::Vtk::DiscontinuousDataCollector<GridView> discontinuousDataCollector(gridView_);
+ // Dune::Vtk::YaspDataCollector<GridView, 4> yaspDataCollector(gridView_);
+ // Dune::Vtk::LagrangeDataCollector<GridView, 4> lagrangeDataCollector(gridView_);
+ // Dune::Vtk::UnstructuredGridWriter writer(lagrangeDataCollector, Dune::Vtk::FormatTypes::ASCII, Dune::Vtk::DataTypes::FLOAT32);
+ // // Dune::Vtk::UnstructuredGridWriter writer(discontinuousDataCollector, Dune::Vtk::FormatTypes::ASCII, Dune::Vtk::DataTypes::FLOAT32);
- // auto f2 = Dune::Functions::makeAnalyticGridViewFunction(indicatorFunction_ ,gridView_);
- // // writer.addPointData(f2 , "IndicatorFunction");
- // writer.addCellData(f2 , "IndicatorFunction");
- // writer.write(resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level) + "_DuneVTK");
- return;
+ // auto f2 = Dune::Functions::makeAnalyticGridViewFunction(indicatorFunction_ ,gridView_);
+ // // writer.addPointData(f2 , "IndicatorFunction");
+ // writer.addCellData(f2 , "IndicatorFunction");
+ // writer.write(resultPath + "/" + baseName + "_MaterialFunction-level"+ std::to_string(level) + "_DuneVTK");
+ return;
};
};
-#endif
\ No newline at end of file
+#endif
diff --git a/dune/microstructure/voigthelper.hh b/dune/microstructure/voigthelper.hh
index 5058f710ec2b21a535b8da7f51aec7082d498646..a3ed64d17e4f1478c57b0eca7539c18a20223c56 100644
--- a/dune/microstructure/voigthelper.hh
+++ b/dune/microstructure/voigthelper.hh
@@ -17,12 +17,12 @@ using VoigtMatrix = Dune::FieldMatrix<T,dim*(dim+1)/2,dim*(dim+1)/2>;
/**
- * @brief Voigt-notation(https://de.wikipedia.org/wiki/Voigtsche_Notation) distinguishes
+ * @brief Voigt-notation(https://de.wikipedia.org/wiki/Voigtsche_Notation) distinguishes
* in the transformation from Matrix to Vector between stresses and strains. The transformation
- * for strains features an additional factor 2 for the non-diagonal entries. In order to avoid
+ * for strains features an additional factor 2 for the non-diagonal entries. In order to avoid
* the use of different data structures for both stresses & strains we use the same Matrix-to-Vector
- * mapping ('matrixToVoigt') and incorporate the factors in suitable places. namely:
- * - The Stiffness matrix of the constitutive relation get scaled by a factor of 2 in the last three columns
+ * mapping ('matrixToVoigt') and incorporate the factors in suitable places. namely:
+ * - The Stiffness matrix of the constitutive relation get scaled by a factor of 2 in the last three columns
* - The 'voigtScalarProduct' scales the lase three products by a factor of 2
*/
diff --git a/experiment/macro-problem/L-clamped-Plate.py b/experiment/macro-problem/L-clamped-Plate.py
index c48aa2dc9ab9f2710a2d786bbd01496ef86289f3..44bffbef77a9f4227cbe98a93ad863fa58b067ba 100644
--- a/experiment/macro-problem/L-clamped-Plate.py
+++ b/experiment/macro-problem/L-clamped-Plate.py
@@ -25,15 +25,15 @@ parameterSet.baseName= 'L-clamped-Plate'
#############################################
# Grid parameters
#############################################
-nX=8
-nY=8
+nX=1
+nY=1
parameterSet.structuredGrid = 'simplex'
parameterSet.lower = '0 0'
parameterSet.upper = '4 4'
parameterSet.elements = str(nX)+' '+ str(nY)
-parameterSet.macroGridLevel = 1
+parameterSet.macroGridLevel = 3
#############################################
# Options
#############################################
@@ -47,6 +47,8 @@ parameterSet.conforming_DiscreteJacobian = 0
#############################################
# Solver parameters
#############################################
+# Choose solver: "RNHM" (Default:Riemannian Newton with Hessian modification), "RiemannianTR" (Riemannain Trust-region method)
+parameterSet.Solver = "RNHM"
# Tolerance of the multigrid solver
parameterSet.tolerance = 1e-12
# Maximum number of multigrid iterations
@@ -99,8 +101,8 @@ def dirichlet_indicator(x) :
#boundary-values/derivative function
-def boundaryValues(x):
- return [x[0], x[1], 0]
+# def boundaryValues(x):
+# return [x[0], x[1], 0]
# def boundaryValuesDerivative(x):
diff --git a/experiment/macro-problem/MVM_infinitynorm.py b/experiment/macro-problem/MVM_infinitynorm.py
new file mode 100644
index 0000000000000000000000000000000000000000..c76b48a7cec2ef8f951462a383f0ecd28d410009
--- /dev/null
+++ b/experiment/macro-problem/MVM_infinitynorm.py
@@ -0,0 +1,333 @@
+import math
+import numpy as np
+
+class ParameterSet(dict):
+ def __init__(self, *args, **kwargs):
+ super(ParameterSet, self).__init__(*args, **kwargs)
+ self.__dict__ = self
+
+parameterSet = ParameterSet()
+
+
+""""
+ Experiment: (0,2) x (0,1) domain
+ with Microstructure with infinity distances (squares) from vertices
+ and RVE center but constant in one space direction.
+
+"""
+
+#############################################
+# Paths
+#############################################
+parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_MVM_infinitynorm'
+parameterSet.baseName= 'MVM_infinitynorm'
+
+#############################################
+# Grid parameters
+#############################################
+nX=8
+nY=4
+
+parameterSet.structuredGrid = 'simplex'
+parameterSet.lower = '0 0'
+parameterSet.upper = '2 1'
+parameterSet.elements = str(nX)+' '+ str(nY)
+
+parameterSet.macroGridLevel = 2
+#############################################
+# Options
+#############################################
+parameterSet.measure_analyticalError = False
+parameterSet.measure_isometryError = False
+parameterSet.vtkWrite_analyticalSurfaceNormal = False
+parameterSet.vtkwrite_analyticalSolution = False
+
+
+parameterSet.conforming_DiscreteJacobian = 0
+#############################################
+# Solver parameters
+#############################################
+# Tolerance of the multigrid solver
+parameterSet.tolerance = 1e-12
+# Maximum number of multigrid iterations
+parameterSet.maxProximalNewtonSteps = 1000
+# Initial regularization
+parameterSet.initialRegularization = 1000
+# Measure convergence
+parameterSet.instrumented = 0
+
+# parameterSet.regularizationNorm = 'Euclidean'
+parameterSet.regularizationNorm = 'H1semi'
+
+############################
+# Problem specifications
+############################
+# Dimension of the domain (only used for numerical-test python files)
+parameterSet.dim = 2
+
+#############################################
+# VTK/Output
+#############################################
+# Write discrete solution as .vtk-File
+parameterSet.writeVTK = 1
+parameterSet.vtkwrite_analyticalSolution = 0
+parameterSet.vtkWrite_analyticalSurfaceNormal = 0
+
+# The grid can be refined several times for a higher resolution in the VTK-file.
+parameterSet.subsamplingRefinement = 0
+
+# Write Dof-Vector to .txt-file
+parameterSet.writeDOFvector = 0
+
+#############################################
+# Dirichlet boundary indicator
+#############################################
+# def dirichlet_indicator(x) :
+# if( (x[0] <= 0.01) or (x[0] >= 1.99)):
+# return True
+# else:
+# return False
+
+# one-sided bc
+def dirichlet_indicator(x) :
+ if( (x[0] <= 0.01) ):
+ return True
+ else:
+ return False
+
+# def dirichlet_indicator(x) :
+# return False
+
+
+#############################################
+# MICROSTRUCTURE
+############################################
+parameterSet.VTKwriteMacroPhaseIndicator = True
+parameterSet.MacroPhaseSubsamplingRefinement = 3
+
+
+class GlobalMicrostructure:
+ """ Class that represents the global microstructure.
+
+ The global microstructure can be defined individually
+ for different (finitely many) macroscopic phases.
+ Each macroscopic phase corresponds to a 'LocalMicrostructure_'
+ sub-class that defines the necessary data for the local
+ micro-problem.
+
+ Currently, there are three possibilities for the LocalMicrostructure:
+ (1) Read the effective quantities (Qhom,Beff) from this parset.
+ (Constant local microstructure)
+ (2) Solve the micro-problem once to obtain the effective quantities.
+ (Constant local microstructure)
+ (3) Solve for micro-problem for each macroscopic quadrature point.
+ (Macroscopocally varying local microstructure))
+ """
+ def __init__(self,macroPoint=[0,0]):
+ self.macroPhases = 1
+
+ # define first local microstructure options.
+ # self.macroPhase1_constantMicrostructure = True
+ self.macroPhase1_constantMicrostructure = False
+ self.macroPhase1_readEffectiveQuantities = False;
+
+
+ def macroPhaseIndicator(self,y): #y :macroscopic point
+ """ Indicatorfunction that determines the domains
+ i.e. macro-phases of different local microstructures.
+ """
+ return 1;
+
+ # Represents the local microstructure in Phase 1
+ class LocalMicrostructure_1:
+ def __init__(self,macroPoint=[0,0]): #default value for initialization
+ self.macroPoint = macroPoint
+
+ self.gamma = 1.0 #in the future this might change depending on macroPoint.
+ self.phases = 2 #in the future this might change depending on macroPoint.
+ #--- Define different material phases:
+
+ #- PHASE 1
+ self.phase1_type="isotropic"
+ self.materialParameters_phase1 = [28.7,22.5] # glass (Fibre)
+ #- PHASE 2
+ self.phase2_type="isotropic"
+ self.materialParameters_phase2 = [1.2,2.58] #Matrix-material: polystyrene
+
+
+ # self.cacheMacroPhase=True
+ # self.macroPhases = [] #store macro phase numbers.
+ # self.macroPhaseCount = 0
+
+
+
+
+ self.theta = 0.2 # only used with constant microstructure.
+
+ self.theta_start = 0.1
+ self.theta_target = 0.3
+
+
+ def one_norm(self,v):
+ # r = 0
+ # for i in range(0, len(v)):
+ # r += np.abs(v[i])
+ # return r
+ return np.linalg.norm(v,1)
+
+ def two_norm(self,v):
+ # r = 0
+ # for i in range(0, len(v)):
+ # r += v[i]**2
+ # return np.sqrt(r)
+ return np.linalg.norm(v, 'fro') # frobenius-norm (default)
+
+
+ def infinity_norm(self,v):
+ # return np.abs(v).max()
+ return np.linalg.norm(v,np.inf) # Use already exisiting norm from numpy..
+
+
+ """
+ extract subarray from A with index i removed.
+ """
+ def subArray(self,v,i):
+ r = []
+ for j in range(0,len(v)):
+ if not (j == i):
+ r.append(v[j])
+
+ return np.array(r)
+
+
+
+ #--- Indicator function for material phases
+ def indicatorFunction(self,y):
+
+ # get local theta value (varies linearly in x1 - direction):
+ macrolength_x = 2.0 #macroscopic length in x1-direction
+ theta = self.theta_start + (self.macroPoint[0]/macrolength_x) * (self.theta_target-self.theta_start)
+
+ # theta = self.theta #used with constant microstructure.
+
+ # cast to numpy array
+ x = np.array(y)
+ # print('y:', y)
+
+ """
+ We assume constancy in one space-direction:
+ """
+ # constant in ...
+ # x = self.subArray(x,0) #y1-direction
+ # x = self.subArray(x,1) #y2-direction
+ x = self.subArray(x,2) #x3-direction
+ # print('y:', y)
+
+ # Dfine nodes (2D as we assume constanty in one direction)
+ node1 = [-0.5,-0.5]
+ node2 = [0.5,-0.5]
+ node3 = [-0.5,0.5]
+ node4 = [0.5,0.5]
+ center = [0,0]
+
+ indicator = (self.infinity_norm(x-node1) < theta) | (self.infinity_norm(x-node2) < theta) \
+ | (self.infinity_norm(x-node3) < theta) | (self.infinity_norm(x-node4) < theta) \
+ | (self.infinity_norm(x-center) < theta)
+
+
+ indicator = indicator & (y[2]>= 0)
+
+ if(indicator):
+ return 1 #Phase1
+ else :
+ return 2 #Phase2
+
+ def prestrain_phase1(self,x):
+ rho = 1.0
+ return [[rho*1.0, 0, 0], [0,rho*1.0,0], [0,0,rho*1.0]]
+
+ def prestrain_phase2(self,x):
+ return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+
+
+
+
+
+
+# def f(x):
+# a = (3.0/16.0)
+# if(x[0] <= 0.01):
+# return [x[0]+a, x[1], 0]
+# elif(x[0] >= 1.99):
+# return [x[0] - a, x[1], 0]
+# else:
+# return [x[0], x[1], 0]
+
+
+def f(x):
+ return [x[0], x[1], 0]
+
+
+def df(x):
+ return ((1,0),
+ (0,1),
+ (0,0))
+
+
+
+fdf = (f, df)
+
+
+#############################################
+# Force
+############################################
+parameterSet.assemble_force_term = False
+
+def force(x):
+ return [0, 0, 0]
+
+
+
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+#############################################
+# Grid parameters
+#############################################
+parameterSet.microGridLevel = 3
+
+#############################################
+# Assembly options
+#############################################
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
+
+#############################################
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
+#############################################
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
+
+#############################################
+# Write/Output options #(default=false)
+#############################################
+# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
+parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
+#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
+parameterSet.MaterialSubsamplingRefinement= 2
+# --- Write Correctos to VTK-File:
+parameterSet.writeCorrectorsVTK = 0
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = False
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/macro-problem/MVM_onenorm.py b/experiment/macro-problem/MVM_onenorm.py
new file mode 100644
index 0000000000000000000000000000000000000000..3cfbe7b7a6386ae66eb35ead762c3871d97873ef
--- /dev/null
+++ b/experiment/macro-problem/MVM_onenorm.py
@@ -0,0 +1,324 @@
+import math
+import numpy as np
+
+class ParameterSet(dict):
+ def __init__(self, *args, **kwargs):
+ super(ParameterSet, self).__init__(*args, **kwargs)
+ self.__dict__ = self
+
+parameterSet = ParameterSet()
+
+
+""""
+ Experiment: (0,2) x (0,1) domain
+ with Microstructure with infinity distances (squares) from vertices
+ and RVE center but constant in one space direction.
+
+"""
+
+#############################################
+# Paths
+#############################################
+parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_MVM_onenorm'
+parameterSet.baseName= 'MVM_onenorm'
+
+#############################################
+# Grid parameters
+#############################################
+nX=8
+nY=4
+
+parameterSet.structuredGrid = 'simplex'
+parameterSet.lower = '0 0'
+parameterSet.upper = '2 1'
+parameterSet.elements = str(nX)+' '+ str(nY)
+
+parameterSet.macroGridLevel = 2
+#############################################
+# Options
+#############################################
+parameterSet.measure_analyticalError = False
+parameterSet.measure_isometryError = False
+parameterSet.vtkWrite_analyticalSurfaceNormal = False
+parameterSet.vtkwrite_analyticalSolution = False
+
+
+parameterSet.conforming_DiscreteJacobian = 0
+#############################################
+# Solver parameters
+#############################################
+# Tolerance of the multigrid solver
+parameterSet.tolerance = 1e-12
+# Maximum number of multigrid iterations
+parameterSet.maxProximalNewtonSteps = 200
+# Initial regularization
+parameterSet.initialRegularization = 200
+# Measure convergence
+parameterSet.instrumented = 0
+
+# parameterSet.regularizationNorm = 'Euclidean'
+parameterSet.regularizationNorm = 'H1semi'
+
+############################
+# Problem specifications
+############################
+# Dimension of the domain (only used for numerical-test python files)
+parameterSet.dim = 2
+
+#############################################
+# VTK/Output
+#############################################
+# Write discrete solution as .vtk-File
+parameterSet.writeVTK = 1
+parameterSet.vtkwrite_analyticalSolution = 0
+parameterSet.vtkWrite_analyticalSurfaceNormal = 0
+
+# The grid can be refined several times for a higher resolution in the VTK-file.
+parameterSet.subsamplingRefinement = 0
+
+# Write Dof-Vector to .txt-file
+parameterSet.writeDOFvector = 0
+
+#############################################
+# Dirichlet boundary indicator
+#############################################
+# def dirichlet_indicator(x) :
+# if( (x[0] <= 0.01) or (x[0] >= 1.99)):
+# return True
+# else:
+# return False
+
+def dirichlet_indicator(x) :
+ return False
+
+
+#############################################
+# MICROSTRUCTURE
+############################################
+parameterSet.VTKwriteMacroPhaseIndicator = True
+parameterSet.MacroPhaseSubsamplingRefinement = 3
+
+
+class GlobalMicrostructure:
+ """ Class that represents the global microstructure.
+
+ The global microstructure can be defined individually
+ for different (finitely many) macroscopic phases.
+ Each macroscopic phase corresponds to a 'LocalMicrostructure_'
+ sub-class that defines the necessary data for the local
+ micro-problem.
+
+ Currently, there are three possibilities for the LocalMicrostructure:
+ (1) Read the effective quantities (Qhom,Beff) from this parset.
+ (Constant local microstructure)
+ (2) Solve the micro-problem once to obtain the effective quantities.
+ (Constant local microstructure)
+ (3) Solve for micro-problem for each macroscopic quadrature point.
+ (Macroscopocally varying local microstructure))
+ """
+ def __init__(self,macroPoint=[0,0]):
+ self.macroPhases = 1
+
+ # define first local microstructure options.
+ self.macroPhase1_constantMicrostructure = False
+ self.macroPhase1_readEffectiveQuantities = False;
+
+
+ def macroPhaseIndicator(self,y): #y :macroscopic point
+ """ Indicatorfunction that determines the domains
+ i.e. macro-phases of different local microstructures.
+ """
+ return 1;
+
+ # Represents the local microstructure in Phase 1
+ class LocalMicrostructure_1:
+ def __init__(self,macroPoint=[0,0]): #default value for initialization
+ self.macroPoint = macroPoint
+
+ self.gamma = 1.0 #in the future this might change depending on macroPoint.
+ self.phases = 2 #in the future this might change depending on macroPoint.
+ #--- Define different material phases:
+
+ #- PHASE 1
+ self.phase1_type="isotropic"
+ self.materialParameters_phase1 = [28.7,22.5] # glass (Fibre)
+ #- PHASE 2
+ self.phase2_type="isotropic"
+ self.materialParameters_phase2 = [1.2,2.58] #Matrix-material: polystyrene
+
+
+ # self.cacheMacroPhase=True
+ # self.macroPhases = [] #store macro phase numbers.
+ # self.macroPhaseCount = 0
+
+
+
+
+ # self.theta = 0.1
+
+ self.theta_start = 0.1
+ self.theta_target = 0.3
+
+
+ def one_norm(self,v):
+ # r = 0
+ # for i in range(0, len(v)):
+ # r += np.abs(v[i])
+ # return r
+ return np.linalg.norm(v,1)
+
+ def two_norm(self,v):
+ # r = 0
+ # for i in range(0, len(v)):
+ # r += v[i]**2
+ # return np.sqrt(r)
+ return np.linalg.norm(v, 'fro') # frobenius-norm (default)
+
+
+ def infinity_norm(self,v):
+ # return np.abs(v).max()
+ return np.linalg.norm(v,np.inf) # Use already exisiting norm from numpy..
+
+
+ """
+ extract subarray from A with index i removed.
+ """
+ def subArray(self,v,i):
+ r = []
+ for j in range(0,len(v)):
+ if not (j == i):
+ r.append(v[j])
+
+ return np.array(r)
+
+
+
+ #--- Indicator function for material phases
+ def indicatorFunction(self,y):
+
+ # get local theta value (varies linearly in x1 - direction):
+ macrolength_x = 2.0 #macroscopic length in x1-direction
+ theta = self.theta_start + (self.macroPoint[0]/macrolength_x) * (self.theta_target-self.theta_start)
+
+
+ # cast to numpy array
+ x = np.array(y)
+ # print('y:', y)
+
+ """
+ We assume constancy in one space-direction:
+ """
+ # constant in ...
+ # x = self.subArray(x,0) #y1-direction
+ # x = self.subArray(x,1) #y2-direction
+ x = self.subArray(x,2) #x3-direction
+ # print('y:', y)
+
+ # Dfine nodes (2D as we assume constanty in one direction)
+ node1 = [-0.5,-0.5]
+ node2 = [0.5,-0.5]
+ node3 = [-0.5,0.5]
+ node4 = [0.5,0.5]
+ center = [0,0]
+
+ indicator = (self.one_norm(x-node1) < theta) | (self.one_norm(x-node2) < theta) \
+ | (self.one_norm(x-node3) < theta) | (self.one_norm(x-node4) < theta) \
+ | (self.one_norm(x-center) < theta)
+
+
+ indicator = indicator & (y[2]>= 0)
+
+ if(indicator):
+ return 1 #Phase1
+ else :
+ return 2 #Phase2
+
+ def prestrain_phase1(self,x):
+ rho = 1.0
+ return [[rho*1.0, 0, 0], [0,rho*1.0,0], [0,0,rho*1.0]]
+
+ def prestrain_phase2(self,x):
+ return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+
+
+
+
+
+
+
+
+def f(x):
+ a = (3.0/16.0)
+ if(x[0] <= 0.01):
+ return [x[0]+a, x[1], 0]
+ elif(x[0] >= 1.99):
+ return [x[0] - a, x[1], 0]
+ else:
+ return [x[0], x[1], 0]
+
+
+
+def df(x):
+ return ((1,0),
+ (0,1),
+ (0,0))
+
+
+
+fdf = (f, df)
+
+
+#############################################
+# Force
+############################################
+parameterSet.assemble_force_term = False
+
+def force(x):
+ return [0, 0, 1e-2]
+
+
+
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+#############################################
+# Grid parameters
+#############################################
+parameterSet.microGridLevel = 3
+
+
+#############################################
+# Assembly options
+#############################################
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
+
+#############################################
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
+#############################################
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
+
+#############################################
+# Write/Output options #(default=false)
+#############################################
+# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
+parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
+#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
+parameterSet.MaterialSubsamplingRefinement= 2
+# --- Write Correctos to VTK-File:
+parameterSet.writeCorrectorsVTK = 0
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = False
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/macro-problem/Rumpf-Experiments/diagonal-trusses.py b/experiment/macro-problem/Rumpf-Experiments/diagonal-trusses.py
index 2529eab2363fb8a9f2869904528d72d389012500..dd4cb6f0d6750f5fec83c91076561071a706afcd 100644
--- a/experiment/macro-problem/Rumpf-Experiments/diagonal-trusses.py
+++ b/experiment/macro-problem/Rumpf-Experiments/diagonal-trusses.py
@@ -91,7 +91,6 @@ def dirichlet_indicator(x) :
#############################################
# MICROSTRUCTURE
############################################
-parameterSet.printMicroOutput = False
parameterSet.VTKwriteMacroPhaseIndicator = True
parameterSet.MacroPhaseSubsamplingRefinement = 3
@@ -546,6 +545,7 @@ def force(x):
# return [[0, 0, 0], [0,0,0], [0,0,0]]
+parameterSet.printMicroOutput = 0 # Flag that allows to supress the output of the micro-problem.
#############################################
# Grid parameters
@@ -555,17 +555,18 @@ parameterSet.microGridLevel = 2
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
@@ -573,20 +574,16 @@ parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for sol
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
-parameterSet.MaterialSubsamplingRefinement = 1
+parameterSet.MaterialSubsamplingRefinement= 2
+# --- Write Correctos to VTK-File:
+parameterSet.writeCorrectorsVTK = 0
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = False
-# --- (Additional debug output)
+#############################################
+# Debug options
+#############################################
parameterSet.print_debug = 0 #(default=false)
-
+parameterSet.print_conditionNumber = 0
parameterSet.print_corrector_matrices = 0
-
-# --- Write Correctos to VTK-File:
-parameterSet.write_VTK = 0
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/macro-problem/Rumpf-Experiments/twisted-valley.py b/experiment/macro-problem/Rumpf-Experiments/twisted-valley.py
index c8c08672a4698c2d6b10c84b1e5372e297b54c09..b3c3b18857515b60eb412ef4951ff0394293d3a8 100644
--- a/experiment/macro-problem/Rumpf-Experiments/twisted-valley.py
+++ b/experiment/macro-problem/Rumpf-Experiments/twisted-valley.py
@@ -91,7 +91,6 @@ def dirichlet_indicator(x) :
#############################################
# MICROSTRUCTURE
############################################
-parameterSet.printMicroOutput = False
parameterSet.VTKwriteMacroPhaseIndicator = True
parameterSet.MacroPhaseSubsamplingRefinement = 3
@@ -288,6 +287,8 @@ def force(x):
return [0, 0, -1e-4]
+parameterSet.printMicroOutput = 0 # Flag that allows to supress the output of the micro-problem.
+
#############################################
# Grid parameters
#############################################
@@ -296,38 +297,35 @@ parameterSet.microGridLevel = 4
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
-parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
+parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
-parameterSet.MaterialSubsamplingRefinement = 1
+parameterSet.MaterialSubsamplingRefinement= 2
+# --- Write Correctos to VTK-File:
+parameterSet.writeCorrectorsVTK = 0
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
-# --- (Additional debug output)
+#############################################
+# Debug options
+#############################################
parameterSet.print_debug = 0 #(default=false)
-
+parameterSet.print_conditionNumber = 0
parameterSet.print_corrector_matrices = 0
-
-# --- Write Correctos to VTK-File:
-parameterSet.writeCorrectorsVTK = 1
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/macro-problem/buckling_experiment/ParaviewBucklingExperiment.py b/experiment/macro-problem/buckling_experiment/ParaviewBucklingExperiment.py
new file mode 100644
index 0000000000000000000000000000000000000000..a195c128fd1ec3badd4c264abd468e96ba2f90fb
--- /dev/null
+++ b/experiment/macro-problem/buckling_experiment/ParaviewBucklingExperiment.py
@@ -0,0 +1,2203 @@
+# trace generated using paraview version 5.10.0-RC1
+#import paraview
+#paraview.compatibility.major = 5
+#paraview.compatibility.minor = 10
+
+#### import the simple module from the paraview
+from paraview.simple import *
+#### disable automatic camera reset on 'Show'
+paraview.simple._DisableFirstRenderCameraReset()
+
+# Disconnect()
+# Connect()
+# ResetSession()
+
+gridLevel = 3
+
+rho = 0.0
+# rho = 1.0
+
+""""
+ remove decimal points for string
+"""
+rhoString = (str(rho)).replace('.', '')
+
+basePath = '/home/klaus/Desktop/Dune_TestTest/dune-microstructure/outputs_buckling_experiment/'
+experimentName = 'buckling_experiment_rho' + rhoString + '_level'+ str(gridLevel) + '_NC.vtu'
+fileName = basePath + experimentName
+print('fileName:', fileName)
+
+
+outputPath = '/home/klaus/Desktop/'
+outputName = outputPath + 'Buckling_rho' + rhoString
+
+#----------------------- Create Boxes to visualize boundary conditions:
+# create a new 'Box'
+box1 = Box(registrationName='Box1')
+
+# Properties modified on box1
+box1.XLength = 0.1
+box1.YLength = 1.0
+box1.ZLength = 0.1
+
+# get active view
+renderView1 = GetActiveViewOrCreate('RenderView')
+
+# show data in view
+box1Display = Show(box1, renderView1, 'GeometryRepresentation')
+
+# trace defaults for the display properties.
+box1Display.Representation = 'Surface'
+box1Display.ColorArrayName = [None, '']
+box1Display.SelectTCoordArray = 'TCoords'
+box1Display.SelectNormalArray = 'Normals'
+box1Display.SelectTangentArray = 'None'
+box1Display.OSPRayScaleArray = 'Normals'
+box1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+box1Display.SelectOrientationVectors = 'None'
+box1Display.ScaleFactor = 0.3140000104904175
+box1Display.SelectScaleArray = 'None'
+box1Display.GlyphType = 'Arrow'
+box1Display.GlyphTableIndexArray = 'None'
+box1Display.GaussianRadius = 0.015700000524520873
+box1Display.SetScaleArray = ['POINTS', 'Normals']
+box1Display.ScaleTransferFunction = 'PiecewiseFunction'
+box1Display.OpacityArray = ['POINTS', 'Normals']
+box1Display.OpacityTransferFunction = 'PiecewiseFunction'
+box1Display.DataAxesGrid = 'GridAxesRepresentation'
+box1Display.PolarAxes = 'PolarAxesRepresentation'
+
+# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+box1Display.ScaleTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+
+# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+box1Display.OpacityTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+
+# reset view to fit data
+renderView1.ResetCamera(False)
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# Properties modified on box1Display
+box1Display.Position = [0, 0.5, 0.0]
+
+# Properties modified on box1Display.DataAxesGrid
+box1Display.DataAxesGrid.Position = [0, 0.5, 0.0]
+
+# Properties modified on box1Display.PolarAxes
+box1Display.PolarAxes.Translation = [0, 0.5, 0.0]
+
+# change solid color
+# change solid color
+box1Display.AmbientColor = [1.0, 0.8196078431372549, 0.7607843137254902]
+box1Display.DiffuseColor = [1.0, 0.8196078431372549, 0.7607843137254902]
+
+# create a new 'Box'
+box2 = Box(registrationName='Box2')
+
+# Properties modified on box2
+box2.XLength = 0.1
+box2.YLength = 1.0
+box2.ZLength = 0.1
+
+# get active view
+renderView1 = GetActiveViewOrCreate('RenderView')
+
+# show data in view
+box2Display = Show(box2, renderView1, 'GeometryRepresentation')
+
+# trace defaults for the display properties.
+box2Display.Representation = 'Surface'
+box2Display.ColorArrayName = [None, '']
+box2Display.SelectTCoordArray = 'TCoords'
+box2Display.SelectNormalArray = 'Normals'
+box2Display.SelectTangentArray = 'None'
+box2Display.OSPRayScaleArray = 'Normals'
+box2Display.OSPRayScaleFunction = 'PiecewiseFunction'
+box2Display.SelectOrientationVectors = 'None'
+box2Display.ScaleFactor = 0.3140000104904175
+box2Display.SelectScaleArray = 'None'
+box2Display.GlyphType = 'Arrow'
+box2Display.GlyphTableIndexArray = 'None'
+box2Display.GaussianRadius = 0.015700000524520873
+box2Display.SetScaleArray = ['POINTS', 'Normals']
+box2Display.ScaleTransferFunction = 'PiecewiseFunction'
+box2Display.OpacityArray = ['POINTS', 'Normals']
+box2Display.OpacityTransferFunction = 'PiecewiseFunction'
+box2Display.DataAxesGrid = 'GridAxesRepresentation'
+box2Display.PolarAxes = 'PolarAxesRepresentation'
+
+# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+box2Display.ScaleTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+
+# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+box2Display.OpacityTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+
+# reset view to fit data
+renderView1.ResetCamera(False)
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# Properties modified on box2Display
+box2Display.Position = [3.5, 0.5, 0.0]
+
+# Properties modified on box2Display.DataAxesGrid
+box2Display.DataAxesGrid.Position = [3.5, 0.5, 0.0]
+
+# Properties modified on box2Display.PolarAxes
+box2Display.PolarAxes.Translation = [3.5, 0.5, 0.0]
+
+# change solid color
+# change solid color
+box2Display.AmbientColor = [1.0, 0.8196078431372549, 0.7607843137254902]
+box2Display.DiffuseColor = [1.0, 0.8196078431372549, 0.7607843137254902]
+
+#----------------------------------------------------------------------------------------------
+
+# create a new 'XML Unstructured Grid Reader'
+buckling_experiment_rho10_level3_NCvtu = XMLUnstructuredGridReader(registrationName=experimentName, FileName=[fileName])
+buckling_experiment_rho10_level3_NCvtu.CellArrayStatus = []
+buckling_experiment_rho10_level3_NCvtu.PointArrayStatus = ['Displacement dune-VTK', 'IsometryErrorFunction', 'SurfaceNormalDiscrete']
+buckling_experiment_rho10_level3_NCvtu.TimeArray = 'TimeValue'
+
+# find source
+box1 = FindSource('Box1')
+
+# Properties modified on buckling_experiment_rho10_level3_NCvtu
+buckling_experiment_rho10_level3_NCvtu.TimeArray = 'None'
+
+# get active view
+renderView1 = GetActiveViewOrCreate('RenderView')
+
+# show data in view
+buckling_experiment_rho10_level3_NCvtuDisplay = Show(buckling_experiment_rho10_level3_NCvtu, renderView1, 'UnstructuredGridRepresentation')
+
+# get 2D transfer function for 'IsometryErrorFunction'
+isometryErrorFunctionTF2D = GetTransferFunction2D('IsometryErrorFunction')
+isometryErrorFunctionTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+isometryErrorFunctionTF2D.Boxes = []
+isometryErrorFunctionTF2D.ScalarRangeInitialized = 0
+isometryErrorFunctionTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+isometryErrorFunctionTF2D.OutputDimensions = [10, 10]
+
+# get color transfer function/color map for 'IsometryErrorFunction'
+isometryErrorFunctionLUT = GetColorTransferFunction('IsometryErrorFunction')
+isometryErrorFunctionLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+isometryErrorFunctionLUT.InterpretValuesAsCategories = 0
+isometryErrorFunctionLUT.AnnotationsInitialized = 0
+isometryErrorFunctionLUT.ShowCategoricalColorsinDataRangeOnly = 0
+isometryErrorFunctionLUT.RescaleOnVisibilityChange = 0
+isometryErrorFunctionLUT.EnableOpacityMapping = 0
+isometryErrorFunctionLUT.TransferFunction2D = isometryErrorFunctionTF2D
+isometryErrorFunctionLUT.Use2DTransferFunction = 0
+isometryErrorFunctionLUT.RGBPoints = [0.0, 0.231373, 0.298039, 0.752941, 0.021906808018684387, 0.865003, 0.865003, 0.865003, 0.043813616037368774, 0.705882, 0.0156863, 0.14902]
+isometryErrorFunctionLUT.UseLogScale = 0
+isometryErrorFunctionLUT.UseOpacityControlPointsFreehandDrawing = 0
+isometryErrorFunctionLUT.ShowDataHistogram = 0
+isometryErrorFunctionLUT.AutomaticDataHistogramComputation = 0
+isometryErrorFunctionLUT.DataHistogramNumberOfBins = 10
+isometryErrorFunctionLUT.ColorSpace = 'Diverging'
+isometryErrorFunctionLUT.UseBelowRangeColor = 0
+isometryErrorFunctionLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+isometryErrorFunctionLUT.UseAboveRangeColor = 0
+isometryErrorFunctionLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+isometryErrorFunctionLUT.NanColor = [1.0, 1.0, 0.0]
+isometryErrorFunctionLUT.NanOpacity = 1.0
+isometryErrorFunctionLUT.Discretize = 1
+isometryErrorFunctionLUT.NumberOfTableValues = 256
+isometryErrorFunctionLUT.ScalarRangeInitialized = 1.0
+isometryErrorFunctionLUT.HSVWrap = 0
+isometryErrorFunctionLUT.VectorComponent = 0
+isometryErrorFunctionLUT.VectorMode = 'Magnitude'
+isometryErrorFunctionLUT.AllowDuplicateScalars = 1
+isometryErrorFunctionLUT.Annotations = []
+isometryErrorFunctionLUT.ActiveAnnotatedValues = []
+isometryErrorFunctionLUT.IndexedColors = []
+isometryErrorFunctionLUT.IndexedOpacities = []
+
+# get opacity transfer function/opacity map for 'IsometryErrorFunction'
+isometryErrorFunctionPWF = GetOpacityTransferFunction('IsometryErrorFunction')
+isometryErrorFunctionPWF.Points = [0.0, 0.0, 0.5, 0.0, 0.043813616037368774, 1.0, 0.5, 0.0]
+isometryErrorFunctionPWF.AllowDuplicateScalars = 1
+isometryErrorFunctionPWF.UseLogScale = 0
+isometryErrorFunctionPWF.ScalarRangeInitialized = 1
+
+# trace defaults for the display properties.
+buckling_experiment_rho10_level3_NCvtuDisplay.Selection = None
+buckling_experiment_rho10_level3_NCvtuDisplay.Representation = 'Surface'
+buckling_experiment_rho10_level3_NCvtuDisplay.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+buckling_experiment_rho10_level3_NCvtuDisplay.LookupTable = isometryErrorFunctionLUT
+buckling_experiment_rho10_level3_NCvtuDisplay.MapScalars = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.MultiComponentsMapping = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.InterpolateScalarsBeforeMapping = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.Opacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PointSize = 2.0
+buckling_experiment_rho10_level3_NCvtuDisplay.LineWidth = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.RenderLinesAsTubes = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.RenderPointsAsSpheres = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.Interpolation = 'Gouraud'
+buckling_experiment_rho10_level3_NCvtuDisplay.Specular = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.SpecularColor = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.SpecularPower = 100.0
+buckling_experiment_rho10_level3_NCvtuDisplay.Luminosity = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.Ambient = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.Diffuse = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.Roughness = 0.3
+buckling_experiment_rho10_level3_NCvtuDisplay.Metallic = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.EdgeTint = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.Anisotropy = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.AnisotropyRotation = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.BaseIOR = 1.5
+buckling_experiment_rho10_level3_NCvtuDisplay.CoatStrength = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.CoatIOR = 2.0
+buckling_experiment_rho10_level3_NCvtuDisplay.CoatRoughness = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.CoatColor = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectTCoordArray = 'None'
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectNormalArray = 'None'
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectTangentArray = 'None'
+buckling_experiment_rho10_level3_NCvtuDisplay.Texture = None
+buckling_experiment_rho10_level3_NCvtuDisplay.RepeatTextures = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.InterpolateTextures = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.SeamlessU = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.SeamlessV = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.UseMipmapTextures = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.ShowTexturesOnBackface = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.BaseColorTexture = None
+buckling_experiment_rho10_level3_NCvtuDisplay.NormalTexture = None
+buckling_experiment_rho10_level3_NCvtuDisplay.NormalScale = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.CoatNormalTexture = None
+buckling_experiment_rho10_level3_NCvtuDisplay.CoatNormalScale = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.MaterialTexture = None
+buckling_experiment_rho10_level3_NCvtuDisplay.OcclusionStrength = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.AnisotropyTexture = None
+buckling_experiment_rho10_level3_NCvtuDisplay.EmissiveTexture = None
+buckling_experiment_rho10_level3_NCvtuDisplay.EmissiveFactor = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.FlipTextures = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.BackfaceRepresentation = 'Follow Frontface'
+buckling_experiment_rho10_level3_NCvtuDisplay.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.BackfaceOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.Position = [0.0, 0.0, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.Scale = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.Orientation = [0.0, 0.0, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.Origin = [0.0, 0.0, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+buckling_experiment_rho10_level3_NCvtuDisplay.Pickable = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.Triangulate = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.UseShaderReplacements = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.ShaderReplacements = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.NonlinearSubdivisionLevel = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.UseDataPartitions = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.OSPRayUseScaleArray = 'All Approximate'
+buckling_experiment_rho10_level3_NCvtuDisplay.OSPRayScaleArray = 'IsometryErrorFunction'
+buckling_experiment_rho10_level3_NCvtuDisplay.OSPRayScaleFunction = 'PiecewiseFunction'
+buckling_experiment_rho10_level3_NCvtuDisplay.OSPRayMaterial = 'None'
+buckling_experiment_rho10_level3_NCvtuDisplay.BlockSelectors = ['/']
+buckling_experiment_rho10_level3_NCvtuDisplay.BlockColors = []
+buckling_experiment_rho10_level3_NCvtuDisplay.BlockOpacities = []
+buckling_experiment_rho10_level3_NCvtuDisplay.Orient = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.OrientationMode = 'Direction'
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectOrientationVectors = 'Displacement dune-VTK'
+buckling_experiment_rho10_level3_NCvtuDisplay.Scaling = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.ScaleMode = 'No Data Scaling Off'
+buckling_experiment_rho10_level3_NCvtuDisplay.ScaleFactor = 0.4
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectScaleArray = 'IsometryErrorFunction'
+buckling_experiment_rho10_level3_NCvtuDisplay.GlyphType = 'Arrow'
+buckling_experiment_rho10_level3_NCvtuDisplay.UseGlyphTable = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.GlyphTableIndexArray = 'IsometryErrorFunction'
+buckling_experiment_rho10_level3_NCvtuDisplay.UseCompositeGlyphTable = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.UseGlyphCullingAndLOD = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.LODValues = []
+buckling_experiment_rho10_level3_NCvtuDisplay.ColorByLODIndex = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.GaussianRadius = 0.02
+buckling_experiment_rho10_level3_NCvtuDisplay.ShaderPreset = 'Sphere'
+buckling_experiment_rho10_level3_NCvtuDisplay.CustomTriangleScale = 3
+buckling_experiment_rho10_level3_NCvtuDisplay.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+"""
+buckling_experiment_rho10_level3_NCvtuDisplay.Emissive = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.ScaleByArray = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+buckling_experiment_rho10_level3_NCvtuDisplay.ScaleArrayComponent = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.UseScaleFunction = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.ScaleTransferFunction = 'PiecewiseFunction'
+buckling_experiment_rho10_level3_NCvtuDisplay.OpacityByArray = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+buckling_experiment_rho10_level3_NCvtuDisplay.OpacityArrayComponent = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.OpacityTransferFunction = 'PiecewiseFunction'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid = 'GridAxesRepresentation'
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionCellLabelBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionCellLabelFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionCellLabelFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionCellLabelFontSize = 18
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionCellLabelItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionCellLabelJustification = 'Left'
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionCellLabelOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionCellLabelShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionPointLabelBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionPointLabelFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionPointLabelFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionPointLabelFontSize = 18
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionPointLabelItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionPointLabelJustification = 'Left'
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionPointLabelOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectionPointLabelShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes = 'PolarAxesRepresentation'
+buckling_experiment_rho10_level3_NCvtuDisplay.ScalarOpacityFunction = isometryErrorFunctionPWF
+buckling_experiment_rho10_level3_NCvtuDisplay.ScalarOpacityUnitDistance = 0.5153882032022076
+buckling_experiment_rho10_level3_NCvtuDisplay.UseSeparateOpacityArray = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+buckling_experiment_rho10_level3_NCvtuDisplay.OpacityComponent = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectMapper = 'Projected tetra'
+buckling_experiment_rho10_level3_NCvtuDisplay.SamplingDimensions = [128, 128, 128]
+buckling_experiment_rho10_level3_NCvtuDisplay.UseFloatingPointFrameBuffer = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+buckling_experiment_rho10_level3_NCvtuDisplay.NumberOfSteps = 40
+buckling_experiment_rho10_level3_NCvtuDisplay.StepSize = 0.25
+buckling_experiment_rho10_level3_NCvtuDisplay.NormalizeVectors = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.EnhancedLIC = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.ColorMode = 'Blend'
+buckling_experiment_rho10_level3_NCvtuDisplay.LICIntensity = 0.8
+buckling_experiment_rho10_level3_NCvtuDisplay.MapModeBias = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.EnhanceContrast = 'Off'
+buckling_experiment_rho10_level3_NCvtuDisplay.LowLICContrastEnhancementFactor = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.HighLICContrastEnhancementFactor = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.LowColorContrastEnhancementFactor = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.HighColorContrastEnhancementFactor = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.AntiAlias = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.MaskOnSurface = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.MaskThreshold = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.MaskIntensity = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.MaskColor = [0.5, 0.5, 0.5]
+buckling_experiment_rho10_level3_NCvtuDisplay.GenerateNoiseTexture = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.NoiseType = 'Gaussian'
+buckling_experiment_rho10_level3_NCvtuDisplay.NoiseTextureSize = 128
+buckling_experiment_rho10_level3_NCvtuDisplay.NoiseGrainSize = 2
+buckling_experiment_rho10_level3_NCvtuDisplay.MinNoiseValue = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.MaxNoiseValue = 0.8
+buckling_experiment_rho10_level3_NCvtuDisplay.NumberOfNoiseLevels = 1024
+buckling_experiment_rho10_level3_NCvtuDisplay.ImpulseNoiseProbability = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.ImpulseNoiseBackgroundValue = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.NoiseGeneratorSeed = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.CompositeStrategy = 'AUTO'
+buckling_experiment_rho10_level3_NCvtuDisplay.UseLICForLOD = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.WriteLog = ''
+
+# init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+buckling_experiment_rho10_level3_NCvtuDisplay.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.OSPRayScaleFunction.UseLogScale = 0
+
+# init the 'Arrow' selected for 'GlyphType'
+buckling_experiment_rho10_level3_NCvtuDisplay.GlyphType.TipResolution = 100
+buckling_experiment_rho10_level3_NCvtuDisplay.GlyphType.TipRadius = 0.075
+buckling_experiment_rho10_level3_NCvtuDisplay.GlyphType.TipLength = 0.35
+buckling_experiment_rho10_level3_NCvtuDisplay.GlyphType.ShaftResolution = 100
+buckling_experiment_rho10_level3_NCvtuDisplay.GlyphType.ShaftRadius = 0.015
+buckling_experiment_rho10_level3_NCvtuDisplay.GlyphType.Invert = 0
+
+# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+buckling_experiment_rho10_level3_NCvtuDisplay.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.043813616037368774, 1.0, 0.5, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.ScaleTransferFunction.UseLogScale = 0
+
+# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+buckling_experiment_rho10_level3_NCvtuDisplay.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.043813616037368774, 1.0, 0.5, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.OpacityTransferFunction.UseLogScale = 0
+
+# init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XTitle = 'X Axis'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YTitle = 'Y Axis'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZTitle = 'Z Axis'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XTitleFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XTitleFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XTitleBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XTitleItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XTitleFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XTitleShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XTitleOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YTitleFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YTitleFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YTitleBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YTitleItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YTitleFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YTitleShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YTitleOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZTitleBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZTitleItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZTitleShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZTitleOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.FacesToRender = 63
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.CullBackface = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.CullFrontface = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ShowGrid = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ShowEdges = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ShowTicks = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.LabelUniqueEdgesOnly = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.AxesToLabel = 63
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XLabelFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XLabelFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XLabelBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XLabelItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XLabelFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XLabelShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XLabelOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YLabelFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YLabelFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YLabelBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YLabelItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YLabelFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YLabelShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YLabelOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZLabelBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZLabelItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZLabelShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZLabelOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XAxisNotation = 'Mixed'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XAxisPrecision = 2
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XAxisUseCustomLabels = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.XAxisLabels = []
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YAxisNotation = 'Mixed'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YAxisPrecision = 2
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YAxisUseCustomLabels = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.YAxisLabels = []
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZAxisNotation = 'Mixed'
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZAxisPrecision = 2
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZAxisUseCustomLabels = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.ZAxisLabels = []
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.UseCustomBounds = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+# init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.Visibility = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.Translation = [0.0, 0.0, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.Scale = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.EnableCustomBounds = [0, 0, 0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.EnableCustomRange = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.CustomRange = [0.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.RadialAxesVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.DrawRadialGridlines = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarArcsVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.DrawPolarArcsGridlines = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.NumberOfRadialAxes = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.AutoSubdividePolarAxis = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.NumberOfPolarAxis = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.MinimumRadius = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.MinimumAngle = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.MaximumAngle = 90.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.RadialAxesOriginToPolarAxis = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.Ratio = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitle = 'Radial Distance'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarLabelVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarLabelFormat = '%-#6.3g'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarLabelExponentLocation = 'Labels'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.RadialLabelVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.RadialLabelFormat = '%-#3.1f'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.RadialLabelLocation = 'Bottom'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.RadialUnitsVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.ScreenSize = 10.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextBold = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextItalic = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextShadow = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.EnableDistanceLOD = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.DistanceLODThreshold = 0.7
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.EnableViewAngleLOD = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.ViewAngleLODThreshold = 0.7
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.SmallestVisiblePolarAngle = 0.5
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarTicksVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.ArcTicksOriginToPolarAxis = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.TickLocation = 'Both'
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.AxisTickVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.AxisMinorTickVisibility = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.ArcTickVisibility = 1
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.ArcMinorTickVisibility = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.DeltaAngleMajor = 10.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.DeltaAngleMinor = 5.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisMajorTickSize = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTickRatioSize = 0.3
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisMajorTickThickness = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.PolarAxisTickRatioThickness = 0.5
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.ArcMajorTickSize = 0.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.ArcTickRatioSize = 0.3
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.ArcMajorTickThickness = 1.0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.ArcTickRatioThickness = 0.5
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.Use2DMode = 0
+buckling_experiment_rho10_level3_NCvtuDisplay.PolarAxes.UseLogAxis = 0
+
+# show color bar/color legend
+buckling_experiment_rho10_level3_NCvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+# find source
+box2 = FindSource('Box2')
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# set scalar coloring
+ColorBy(buckling_experiment_rho10_level3_NCvtuDisplay, ('POINTS', 'Displacement dune-VTK', 'Magnitude'))
+
+# Hide the scalar bar for this color map if no visible data is colored by it.
+HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+# rescale color and/or opacity maps used to include current data range
+buckling_experiment_rho10_level3_NCvtuDisplay.RescaleTransferFunctionToDataRange(True, False)
+
+# show color bar/color legend
+buckling_experiment_rho10_level3_NCvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+# get 2D transfer function for 'DisplacementduneVTK'
+displacementduneVTKTF2D = GetTransferFunction2D('DisplacementduneVTK')
+displacementduneVTKTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+displacementduneVTKTF2D.Boxes = []
+displacementduneVTKTF2D.ScalarRangeInitialized = 0
+displacementduneVTKTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+displacementduneVTKTF2D.OutputDimensions = [10, 10]
+
+# get color transfer function/color map for 'DisplacementduneVTK'
+displacementduneVTKLUT = GetColorTransferFunction('DisplacementduneVTK')
+displacementduneVTKLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+displacementduneVTKLUT.InterpretValuesAsCategories = 0
+displacementduneVTKLUT.AnnotationsInitialized = 0
+displacementduneVTKLUT.ShowCategoricalColorsinDataRangeOnly = 0
+displacementduneVTKLUT.RescaleOnVisibilityChange = 0
+displacementduneVTKLUT.EnableOpacityMapping = 0
+displacementduneVTKLUT.TransferFunction2D = displacementduneVTKTF2D
+displacementduneVTKLUT.Use2DTransferFunction = 0
+displacementduneVTKLUT.RGBPoints = [0.0, 0.231373, 0.298039, 0.752941, 0.4440353065316699, 0.865003, 0.865003, 0.865003, 0.8880706130633398, 0.705882, 0.0156863, 0.14902]
+displacementduneVTKLUT.UseLogScale = 0
+displacementduneVTKLUT.UseOpacityControlPointsFreehandDrawing = 0
+displacementduneVTKLUT.ShowDataHistogram = 0
+displacementduneVTKLUT.AutomaticDataHistogramComputation = 0
+displacementduneVTKLUT.DataHistogramNumberOfBins = 10
+displacementduneVTKLUT.ColorSpace = 'Diverging'
+displacementduneVTKLUT.UseBelowRangeColor = 0
+displacementduneVTKLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+displacementduneVTKLUT.UseAboveRangeColor = 0
+displacementduneVTKLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+displacementduneVTKLUT.NanColor = [1.0, 1.0, 0.0]
+displacementduneVTKLUT.NanOpacity = 1.0
+displacementduneVTKLUT.Discretize = 1
+displacementduneVTKLUT.NumberOfTableValues = 256
+displacementduneVTKLUT.ScalarRangeInitialized = 1.0
+displacementduneVTKLUT.HSVWrap = 0
+displacementduneVTKLUT.VectorComponent = 0
+displacementduneVTKLUT.VectorMode = 'Magnitude'
+displacementduneVTKLUT.AllowDuplicateScalars = 1
+displacementduneVTKLUT.Annotations = []
+displacementduneVTKLUT.ActiveAnnotatedValues = []
+displacementduneVTKLUT.IndexedColors = []
+displacementduneVTKLUT.IndexedOpacities = []
+
+# get opacity transfer function/opacity map for 'DisplacementduneVTK'
+displacementduneVTKPWF = GetOpacityTransferFunction('DisplacementduneVTK')
+displacementduneVTKPWF.Points = [0.0, 0.0, 0.5, 0.0, 0.8880706130633398, 1.0, 0.5, 0.0]
+displacementduneVTKPWF.AllowDuplicateScalars = 1
+displacementduneVTKPWF.UseLogScale = 0
+displacementduneVTKPWF.ScalarRangeInitialized = 1
+
+# create a new 'Warp By Vector'
+warpByVector1 = WarpByVector(registrationName='WarpByVector1', Input=buckling_experiment_rho10_level3_NCvtu)
+warpByVector1.Vectors = ['POINTS', 'Displacement dune-VTK']
+warpByVector1.ScaleFactor = 1.0
+
+# show data in view
+warpByVector1Display = Show(warpByVector1, renderView1, 'UnstructuredGridRepresentation')
+
+# trace defaults for the display properties.
+warpByVector1Display.Selection = None
+warpByVector1Display.Representation = 'Surface'
+warpByVector1Display.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+warpByVector1Display.LookupTable = isometryErrorFunctionLUT
+warpByVector1Display.MapScalars = 1
+warpByVector1Display.MultiComponentsMapping = 0
+warpByVector1Display.InterpolateScalarsBeforeMapping = 1
+warpByVector1Display.Opacity = 1.0
+warpByVector1Display.PointSize = 2.0
+warpByVector1Display.LineWidth = 1.0
+warpByVector1Display.RenderLinesAsTubes = 0
+warpByVector1Display.RenderPointsAsSpheres = 0
+warpByVector1Display.Interpolation = 'Gouraud'
+warpByVector1Display.Specular = 0.0
+warpByVector1Display.SpecularColor = [1.0, 1.0, 1.0]
+warpByVector1Display.SpecularPower = 100.0
+warpByVector1Display.Luminosity = 0.0
+warpByVector1Display.Ambient = 0.0
+warpByVector1Display.Diffuse = 1.0
+warpByVector1Display.Roughness = 0.3
+warpByVector1Display.Metallic = 0.0
+warpByVector1Display.EdgeTint = [1.0, 1.0, 1.0]
+warpByVector1Display.Anisotropy = 0.0
+warpByVector1Display.AnisotropyRotation = 0.0
+warpByVector1Display.BaseIOR = 1.5
+warpByVector1Display.CoatStrength = 0.0
+warpByVector1Display.CoatIOR = 2.0
+warpByVector1Display.CoatRoughness = 0.0
+warpByVector1Display.CoatColor = [1.0, 1.0, 1.0]
+warpByVector1Display.SelectTCoordArray = 'None'
+warpByVector1Display.SelectNormalArray = 'None'
+warpByVector1Display.SelectTangentArray = 'None'
+warpByVector1Display.Texture = None
+warpByVector1Display.RepeatTextures = 1
+warpByVector1Display.InterpolateTextures = 0
+warpByVector1Display.SeamlessU = 0
+warpByVector1Display.SeamlessV = 0
+warpByVector1Display.UseMipmapTextures = 0
+warpByVector1Display.ShowTexturesOnBackface = 1
+warpByVector1Display.BaseColorTexture = None
+warpByVector1Display.NormalTexture = None
+warpByVector1Display.NormalScale = 1.0
+warpByVector1Display.CoatNormalTexture = None
+warpByVector1Display.CoatNormalScale = 1.0
+warpByVector1Display.MaterialTexture = None
+warpByVector1Display.OcclusionStrength = 1.0
+warpByVector1Display.AnisotropyTexture = None
+warpByVector1Display.EmissiveTexture = None
+warpByVector1Display.EmissiveFactor = [1.0, 1.0, 1.0]
+warpByVector1Display.FlipTextures = 0
+warpByVector1Display.BackfaceRepresentation = 'Follow Frontface'
+warpByVector1Display.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+warpByVector1Display.BackfaceOpacity = 1.0
+warpByVector1Display.Position = [0.0, 0.0, 0.0]
+warpByVector1Display.Scale = [1.0, 1.0, 1.0]
+warpByVector1Display.Orientation = [0.0, 0.0, 0.0]
+warpByVector1Display.Origin = [0.0, 0.0, 0.0]
+warpByVector1Display.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+warpByVector1Display.Pickable = 1
+warpByVector1Display.Triangulate = 0
+warpByVector1Display.UseShaderReplacements = 0
+warpByVector1Display.ShaderReplacements = ''
+warpByVector1Display.NonlinearSubdivisionLevel = 1
+warpByVector1Display.UseDataPartitions = 0
+warpByVector1Display.OSPRayUseScaleArray = 'All Approximate'
+warpByVector1Display.OSPRayScaleArray = 'IsometryErrorFunction'
+warpByVector1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+warpByVector1Display.OSPRayMaterial = 'None'
+warpByVector1Display.BlockSelectors = ['/']
+warpByVector1Display.BlockColors = []
+warpByVector1Display.BlockOpacities = []
+warpByVector1Display.Orient = 0
+warpByVector1Display.OrientationMode = 'Direction'
+warpByVector1Display.SelectOrientationVectors = 'Displacement dune-VTK'
+warpByVector1Display.Scaling = 0
+warpByVector1Display.ScaleMode = 'No Data Scaling Off'
+warpByVector1Display.ScaleFactor = 0.35000000000000003
+warpByVector1Display.SelectScaleArray = 'IsometryErrorFunction'
+warpByVector1Display.GlyphType = 'Arrow'
+warpByVector1Display.UseGlyphTable = 0
+warpByVector1Display.GlyphTableIndexArray = 'IsometryErrorFunction'
+warpByVector1Display.UseCompositeGlyphTable = 0
+warpByVector1Display.UseGlyphCullingAndLOD = 0
+warpByVector1Display.LODValues = []
+warpByVector1Display.ColorByLODIndex = 0
+warpByVector1Display.GaussianRadius = 0.0175
+warpByVector1Display.ShaderPreset = 'Sphere'
+warpByVector1Display.CustomTriangleScale = 3
+warpByVector1Display.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+"""
+warpByVector1Display.Emissive = 0
+warpByVector1Display.ScaleByArray = 0
+warpByVector1Display.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+warpByVector1Display.ScaleArrayComponent = ''
+warpByVector1Display.UseScaleFunction = 1
+warpByVector1Display.ScaleTransferFunction = 'PiecewiseFunction'
+warpByVector1Display.OpacityByArray = 0
+warpByVector1Display.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+warpByVector1Display.OpacityArrayComponent = ''
+warpByVector1Display.OpacityTransferFunction = 'PiecewiseFunction'
+warpByVector1Display.DataAxesGrid = 'GridAxesRepresentation'
+warpByVector1Display.SelectionCellLabelBold = 0
+warpByVector1Display.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+warpByVector1Display.SelectionCellLabelFontFamily = 'Arial'
+warpByVector1Display.SelectionCellLabelFontFile = ''
+warpByVector1Display.SelectionCellLabelFontSize = 18
+warpByVector1Display.SelectionCellLabelItalic = 0
+warpByVector1Display.SelectionCellLabelJustification = 'Left'
+warpByVector1Display.SelectionCellLabelOpacity = 1.0
+warpByVector1Display.SelectionCellLabelShadow = 0
+warpByVector1Display.SelectionPointLabelBold = 0
+warpByVector1Display.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+warpByVector1Display.SelectionPointLabelFontFamily = 'Arial'
+warpByVector1Display.SelectionPointLabelFontFile = ''
+warpByVector1Display.SelectionPointLabelFontSize = 18
+warpByVector1Display.SelectionPointLabelItalic = 0
+warpByVector1Display.SelectionPointLabelJustification = 'Left'
+warpByVector1Display.SelectionPointLabelOpacity = 1.0
+warpByVector1Display.SelectionPointLabelShadow = 0
+warpByVector1Display.PolarAxes = 'PolarAxesRepresentation'
+warpByVector1Display.ScalarOpacityFunction = isometryErrorFunctionPWF
+warpByVector1Display.ScalarOpacityUnitDistance = 0.46736141372385986
+warpByVector1Display.UseSeparateOpacityArray = 0
+warpByVector1Display.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+warpByVector1Display.OpacityComponent = ''
+warpByVector1Display.SelectMapper = 'Projected tetra'
+warpByVector1Display.SamplingDimensions = [128, 128, 128]
+warpByVector1Display.UseFloatingPointFrameBuffer = 1
+warpByVector1Display.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+warpByVector1Display.NumberOfSteps = 40
+warpByVector1Display.StepSize = 0.25
+warpByVector1Display.NormalizeVectors = 1
+warpByVector1Display.EnhancedLIC = 1
+warpByVector1Display.ColorMode = 'Blend'
+warpByVector1Display.LICIntensity = 0.8
+warpByVector1Display.MapModeBias = 0.0
+warpByVector1Display.EnhanceContrast = 'Off'
+warpByVector1Display.LowLICContrastEnhancementFactor = 0.0
+warpByVector1Display.HighLICContrastEnhancementFactor = 0.0
+warpByVector1Display.LowColorContrastEnhancementFactor = 0.0
+warpByVector1Display.HighColorContrastEnhancementFactor = 0.0
+warpByVector1Display.AntiAlias = 0
+warpByVector1Display.MaskOnSurface = 1
+warpByVector1Display.MaskThreshold = 0.0
+warpByVector1Display.MaskIntensity = 0.0
+warpByVector1Display.MaskColor = [0.5, 0.5, 0.5]
+warpByVector1Display.GenerateNoiseTexture = 0
+warpByVector1Display.NoiseType = 'Gaussian'
+warpByVector1Display.NoiseTextureSize = 128
+warpByVector1Display.NoiseGrainSize = 2
+warpByVector1Display.MinNoiseValue = 0.0
+warpByVector1Display.MaxNoiseValue = 0.8
+warpByVector1Display.NumberOfNoiseLevels = 1024
+warpByVector1Display.ImpulseNoiseProbability = 1.0
+warpByVector1Display.ImpulseNoiseBackgroundValue = 0.0
+warpByVector1Display.NoiseGeneratorSeed = 1
+warpByVector1Display.CompositeStrategy = 'AUTO'
+warpByVector1Display.UseLICForLOD = 0
+warpByVector1Display.WriteLog = ''
+
+# init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+warpByVector1Display.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+warpByVector1Display.OSPRayScaleFunction.UseLogScale = 0
+
+# # init the 'Arrow' selected for 'GlyphType'
+# warpByVector1Display.GlyphType.TipResolution = 6
+# warpByVector1Display.GlyphType.TipRadius = 0.1
+# warpByVector1Display.GlyphType.TipLength = 0.35
+# warpByVector1Display.GlyphType.ShaftResolution = 6
+# warpByVector1Display.GlyphType.ShaftRadius = 0.03
+# warpByVector1Display.GlyphType.Invert = 0
+
+# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+warpByVector1Display.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.043813616037368774, 1.0, 0.5, 0.0]
+warpByVector1Display.ScaleTransferFunction.UseLogScale = 0
+
+# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+warpByVector1Display.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.043813616037368774, 1.0, 0.5, 0.0]
+warpByVector1Display.OpacityTransferFunction.UseLogScale = 0
+
+# init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+warpByVector1Display.DataAxesGrid.XTitle = 'X Axis'
+warpByVector1Display.DataAxesGrid.YTitle = 'Y Axis'
+warpByVector1Display.DataAxesGrid.ZTitle = 'Z Axis'
+warpByVector1Display.DataAxesGrid.XTitleFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.XTitleFontFile = ''
+warpByVector1Display.DataAxesGrid.XTitleBold = 0
+warpByVector1Display.DataAxesGrid.XTitleItalic = 0
+warpByVector1Display.DataAxesGrid.XTitleFontSize = 12
+warpByVector1Display.DataAxesGrid.XTitleShadow = 0
+warpByVector1Display.DataAxesGrid.XTitleOpacity = 1.0
+warpByVector1Display.DataAxesGrid.YTitleFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.YTitleFontFile = ''
+warpByVector1Display.DataAxesGrid.YTitleBold = 0
+warpByVector1Display.DataAxesGrid.YTitleItalic = 0
+warpByVector1Display.DataAxesGrid.YTitleFontSize = 12
+warpByVector1Display.DataAxesGrid.YTitleShadow = 0
+warpByVector1Display.DataAxesGrid.YTitleOpacity = 1.0
+warpByVector1Display.DataAxesGrid.ZTitleFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.ZTitleFontFile = ''
+warpByVector1Display.DataAxesGrid.ZTitleBold = 0
+warpByVector1Display.DataAxesGrid.ZTitleItalic = 0
+warpByVector1Display.DataAxesGrid.ZTitleFontSize = 12
+warpByVector1Display.DataAxesGrid.ZTitleShadow = 0
+warpByVector1Display.DataAxesGrid.ZTitleOpacity = 1.0
+warpByVector1Display.DataAxesGrid.FacesToRender = 63
+warpByVector1Display.DataAxesGrid.CullBackface = 0
+warpByVector1Display.DataAxesGrid.CullFrontface = 1
+warpByVector1Display.DataAxesGrid.ShowGrid = 0
+warpByVector1Display.DataAxesGrid.ShowEdges = 1
+warpByVector1Display.DataAxesGrid.ShowTicks = 1
+warpByVector1Display.DataAxesGrid.LabelUniqueEdgesOnly = 1
+warpByVector1Display.DataAxesGrid.AxesToLabel = 63
+warpByVector1Display.DataAxesGrid.XLabelFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.XLabelFontFile = ''
+warpByVector1Display.DataAxesGrid.XLabelBold = 0
+warpByVector1Display.DataAxesGrid.XLabelItalic = 0
+warpByVector1Display.DataAxesGrid.XLabelFontSize = 12
+warpByVector1Display.DataAxesGrid.XLabelShadow = 0
+warpByVector1Display.DataAxesGrid.XLabelOpacity = 1.0
+warpByVector1Display.DataAxesGrid.YLabelFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.YLabelFontFile = ''
+warpByVector1Display.DataAxesGrid.YLabelBold = 0
+warpByVector1Display.DataAxesGrid.YLabelItalic = 0
+warpByVector1Display.DataAxesGrid.YLabelFontSize = 12
+warpByVector1Display.DataAxesGrid.YLabelShadow = 0
+warpByVector1Display.DataAxesGrid.YLabelOpacity = 1.0
+warpByVector1Display.DataAxesGrid.ZLabelFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.ZLabelFontFile = ''
+warpByVector1Display.DataAxesGrid.ZLabelBold = 0
+warpByVector1Display.DataAxesGrid.ZLabelItalic = 0
+warpByVector1Display.DataAxesGrid.ZLabelFontSize = 12
+warpByVector1Display.DataAxesGrid.ZLabelShadow = 0
+warpByVector1Display.DataAxesGrid.ZLabelOpacity = 1.0
+warpByVector1Display.DataAxesGrid.XAxisNotation = 'Mixed'
+warpByVector1Display.DataAxesGrid.XAxisPrecision = 2
+warpByVector1Display.DataAxesGrid.XAxisUseCustomLabels = 0
+warpByVector1Display.DataAxesGrid.XAxisLabels = []
+warpByVector1Display.DataAxesGrid.YAxisNotation = 'Mixed'
+warpByVector1Display.DataAxesGrid.YAxisPrecision = 2
+warpByVector1Display.DataAxesGrid.YAxisUseCustomLabels = 0
+warpByVector1Display.DataAxesGrid.YAxisLabels = []
+warpByVector1Display.DataAxesGrid.ZAxisNotation = 'Mixed'
+warpByVector1Display.DataAxesGrid.ZAxisPrecision = 2
+warpByVector1Display.DataAxesGrid.ZAxisUseCustomLabels = 0
+warpByVector1Display.DataAxesGrid.ZAxisLabels = []
+warpByVector1Display.DataAxesGrid.UseCustomBounds = 0
+warpByVector1Display.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+# init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+warpByVector1Display.PolarAxes.Visibility = 0
+warpByVector1Display.PolarAxes.Translation = [0.0, 0.0, 0.0]
+warpByVector1Display.PolarAxes.Scale = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+warpByVector1Display.PolarAxes.EnableCustomBounds = [0, 0, 0]
+warpByVector1Display.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+warpByVector1Display.PolarAxes.EnableCustomRange = 0
+warpByVector1Display.PolarAxes.CustomRange = [0.0, 1.0]
+warpByVector1Display.PolarAxes.PolarAxisVisibility = 1
+warpByVector1Display.PolarAxes.RadialAxesVisibility = 1
+warpByVector1Display.PolarAxes.DrawRadialGridlines = 1
+warpByVector1Display.PolarAxes.PolarArcsVisibility = 1
+warpByVector1Display.PolarAxes.DrawPolarArcsGridlines = 1
+warpByVector1Display.PolarAxes.NumberOfRadialAxes = 0
+warpByVector1Display.PolarAxes.AutoSubdividePolarAxis = 1
+warpByVector1Display.PolarAxes.NumberOfPolarAxis = 0
+warpByVector1Display.PolarAxes.MinimumRadius = 0.0
+warpByVector1Display.PolarAxes.MinimumAngle = 0.0
+warpByVector1Display.PolarAxes.MaximumAngle = 90.0
+warpByVector1Display.PolarAxes.RadialAxesOriginToPolarAxis = 1
+warpByVector1Display.PolarAxes.Ratio = 1.0
+warpByVector1Display.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.PolarAxisTitleVisibility = 1
+warpByVector1Display.PolarAxes.PolarAxisTitle = 'Radial Distance'
+warpByVector1Display.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+warpByVector1Display.PolarAxes.PolarLabelVisibility = 1
+warpByVector1Display.PolarAxes.PolarLabelFormat = '%-#6.3g'
+warpByVector1Display.PolarAxes.PolarLabelExponentLocation = 'Labels'
+warpByVector1Display.PolarAxes.RadialLabelVisibility = 1
+warpByVector1Display.PolarAxes.RadialLabelFormat = '%-#3.1f'
+warpByVector1Display.PolarAxes.RadialLabelLocation = 'Bottom'
+warpByVector1Display.PolarAxes.RadialUnitsVisibility = 1
+warpByVector1Display.PolarAxes.ScreenSize = 10.0
+warpByVector1Display.PolarAxes.PolarAxisTitleOpacity = 1.0
+warpByVector1Display.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+warpByVector1Display.PolarAxes.PolarAxisTitleFontFile = ''
+warpByVector1Display.PolarAxes.PolarAxisTitleBold = 0
+warpByVector1Display.PolarAxes.PolarAxisTitleItalic = 0
+warpByVector1Display.PolarAxes.PolarAxisTitleShadow = 0
+warpByVector1Display.PolarAxes.PolarAxisTitleFontSize = 12
+warpByVector1Display.PolarAxes.PolarAxisLabelOpacity = 1.0
+warpByVector1Display.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+warpByVector1Display.PolarAxes.PolarAxisLabelFontFile = ''
+warpByVector1Display.PolarAxes.PolarAxisLabelBold = 0
+warpByVector1Display.PolarAxes.PolarAxisLabelItalic = 0
+warpByVector1Display.PolarAxes.PolarAxisLabelShadow = 0
+warpByVector1Display.PolarAxes.PolarAxisLabelFontSize = 12
+warpByVector1Display.PolarAxes.LastRadialAxisTextOpacity = 1.0
+warpByVector1Display.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+warpByVector1Display.PolarAxes.LastRadialAxisTextFontFile = ''
+warpByVector1Display.PolarAxes.LastRadialAxisTextBold = 0
+warpByVector1Display.PolarAxes.LastRadialAxisTextItalic = 0
+warpByVector1Display.PolarAxes.LastRadialAxisTextShadow = 0
+warpByVector1Display.PolarAxes.LastRadialAxisTextFontSize = 12
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextBold = 0
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextItalic = 0
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextShadow = 0
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+warpByVector1Display.PolarAxes.EnableDistanceLOD = 1
+warpByVector1Display.PolarAxes.DistanceLODThreshold = 0.7
+warpByVector1Display.PolarAxes.EnableViewAngleLOD = 1
+warpByVector1Display.PolarAxes.ViewAngleLODThreshold = 0.7
+warpByVector1Display.PolarAxes.SmallestVisiblePolarAngle = 0.5
+warpByVector1Display.PolarAxes.PolarTicksVisibility = 1
+warpByVector1Display.PolarAxes.ArcTicksOriginToPolarAxis = 1
+warpByVector1Display.PolarAxes.TickLocation = 'Both'
+warpByVector1Display.PolarAxes.AxisTickVisibility = 1
+warpByVector1Display.PolarAxes.AxisMinorTickVisibility = 0
+warpByVector1Display.PolarAxes.ArcTickVisibility = 1
+warpByVector1Display.PolarAxes.ArcMinorTickVisibility = 0
+warpByVector1Display.PolarAxes.DeltaAngleMajor = 10.0
+warpByVector1Display.PolarAxes.DeltaAngleMinor = 5.0
+warpByVector1Display.PolarAxes.PolarAxisMajorTickSize = 0.0
+warpByVector1Display.PolarAxes.PolarAxisTickRatioSize = 0.3
+warpByVector1Display.PolarAxes.PolarAxisMajorTickThickness = 1.0
+warpByVector1Display.PolarAxes.PolarAxisTickRatioThickness = 0.5
+warpByVector1Display.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+warpByVector1Display.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+warpByVector1Display.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+warpByVector1Display.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+warpByVector1Display.PolarAxes.ArcMajorTickSize = 0.0
+warpByVector1Display.PolarAxes.ArcTickRatioSize = 0.3
+warpByVector1Display.PolarAxes.ArcMajorTickThickness = 1.0
+warpByVector1Display.PolarAxes.ArcTickRatioThickness = 0.5
+warpByVector1Display.PolarAxes.Use2DMode = 0
+warpByVector1Display.PolarAxes.UseLogAxis = 0
+
+# hide data in view
+Hide(buckling_experiment_rho10_level3_NCvtu, renderView1)
+
+# show color bar/color legend
+warpByVector1Display.SetScalarBarVisibility(renderView1, True)
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# set active source
+SetActiveSource(buckling_experiment_rho10_level3_NCvtu)
+
+# show data in view
+buckling_experiment_rho10_level3_NCvtuDisplay = Show(buckling_experiment_rho10_level3_NCvtu, renderView1, 'UnstructuredGridRepresentation')
+
+# show color bar/color legend
+buckling_experiment_rho10_level3_NCvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+# hide data in view
+Hide(buckling_experiment_rho10_level3_NCvtu, renderView1)
+
+# Apply a preset using its name. Note this may not work as expected when presets have duplicate names.
+displacementduneVTKLUT.ApplyPreset('Greens', True)
+
+# set active source
+SetActiveSource(warpByVector1)
+
+# Apply a preset using its name. Note this may not work as expected when presets have duplicate names.
+isometryErrorFunctionLUT.ApplyPreset('Greens', True)
+
+# set scalar coloring
+ColorBy(warpByVector1Display, ('POINTS', 'Displacement dune-VTK', 'Magnitude'))
+
+# Hide the scalar bar for this color map if no visible data is colored by it.
+HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+# rescale color and/or opacity maps used to include current data range
+warpByVector1Display.RescaleTransferFunctionToDataRange(True, False)
+
+# show color bar/color legend
+warpByVector1Display.SetScalarBarVisibility(renderView1, True)
+
+# hide color bar/color legend
+warpByVector1Display.SetScalarBarVisibility(renderView1, False)
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.NonlinearSubdivisionLevel = 4
+
+# Properties modified on renderView1
+renderView1.OrientationAxesVisibility = 0
+
+#================================================================
+# addendum: following script captures some of the application
+# state to faithfully reproduce the visualization during playback
+#================================================================
+
+
+
+#--------------------------------------------
+# uncomment the following to render all views
+# RenderAllViews()
+# alternatively, if you want to write images, you can use SaveScreenshot(...).
+
+
+
+# get active view
+renderView1 = GetActiveViewOrCreate('RenderView')
+
+renderView1.ApplyIsometricView()
+
+# reset view to fit data
+renderView1.ResetCamera(False)
+
+renderView1.AdjustRoll(-90.0)
+
+# reset view to fit data
+renderView1.ResetCamera(True)
+
+# reset view to fit data bounds
+renderView1.ResetCamera(0.0, 3.5, -0.0007144344272091985, 1.0007144212722778, -0.00020493667398113757, 0.8521557450294495, False)
+
+# reset view to fit data bounds
+renderView1.ResetCamera(0.0, 3.5, -0.0007144344272091985, 1.0007144212722778, -0.00020493667398113757, 0.8521557450294495, True)
+
+# reset view to fit data
+renderView1.ResetCamera(False)
+
+# get active source.
+warpByVector1 = GetActiveSource()
+
+# get display properties
+warpByVector1Display = GetDisplayProperties(warpByVector1, view=renderView1)
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Ambient = 0.15
+warpByVector1Display.Ambient = 0.3
+
+# get 2D transfer function for 'DisplacementduneVTK'
+displacementduneVTKTF2D = GetTransferFunction2D('DisplacementduneVTK')
+displacementduneVTKTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+displacementduneVTKTF2D.Boxes = []
+displacementduneVTKTF2D.ScalarRangeInitialized = 0
+displacementduneVTKTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+displacementduneVTKTF2D.OutputDimensions = [10, 10]
+
+# get color transfer function/color map for 'DisplacementduneVTK'
+displacementduneVTKLUT = GetColorTransferFunction('DisplacementduneVTK')
+displacementduneVTKLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+displacementduneVTKLUT.InterpretValuesAsCategories = 0
+displacementduneVTKLUT.AnnotationsInitialized = 0
+displacementduneVTKLUT.ShowCategoricalColorsinDataRangeOnly = 0
+displacementduneVTKLUT.RescaleOnVisibilityChange = 0
+displacementduneVTKLUT.EnableOpacityMapping = 0
+displacementduneVTKLUT.TransferFunction2D = displacementduneVTKTF2D
+displacementduneVTKLUT.Use2DTransferFunction = 0
+displacementduneVTKLUT.RGBPoints = [0.0, 0.0, 0.266667, 0.105882, 0.05572199061665925, 0.0, 0.347374, 0.139346, 0.1114439812333185, 0.000538, 0.427912, 0.172933, 0.1671664158852843, 0.069435, 0.486967, 0.222145, 0.22288840650194355, 0.138178, 0.546082, 0.271326, 0.2786103971186028, 0.197232, 0.609073, 0.31857, 0.334332387735262, 0.257255, 0.671742, 0.365859, 0.3900543783519213, 0.357647, 0.720953, 0.415071, 0.4457766220687053, 0.45767, 0.769919, 0.465021, 0.5014988036205464, 0.546251, 0.811257, 0.537855, 0.5572207942372056, 0.634295, 0.852211, 0.610688, 0.6129427848538649, 0.709097, 0.883706, 0.683522, 0.6686647754705242, 0.78316, 0.914833, 0.755894, 0.7243872101224899, 0.842215, 0.938454, 0.818885, 0.7801092007391492, 0.899977, 0.961538, 0.880692, 0.8358311913558085, 0.935409, 0.975317, 0.92203, 0.8880706130633398, 0.968627, 0.988235, 0.960784]
+displacementduneVTKLUT.UseLogScale = 0
+displacementduneVTKLUT.UseOpacityControlPointsFreehandDrawing = 0
+displacementduneVTKLUT.ShowDataHistogram = 0
+displacementduneVTKLUT.AutomaticDataHistogramComputation = 0
+displacementduneVTKLUT.DataHistogramNumberOfBins = 10
+displacementduneVTKLUT.ColorSpace = 'Lab'
+displacementduneVTKLUT.UseBelowRangeColor = 0
+displacementduneVTKLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+displacementduneVTKLUT.UseAboveRangeColor = 0
+displacementduneVTKLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+displacementduneVTKLUT.NanColor = [1.0, 1.0, 0.0]
+displacementduneVTKLUT.NanOpacity = 1.0
+displacementduneVTKLUT.Discretize = 1
+displacementduneVTKLUT.NumberOfTableValues = 256
+displacementduneVTKLUT.ScalarRangeInitialized = 1.0
+displacementduneVTKLUT.HSVWrap = 0
+displacementduneVTKLUT.VectorComponent = 0
+displacementduneVTKLUT.VectorMode = 'Magnitude'
+displacementduneVTKLUT.AllowDuplicateScalars = 1
+displacementduneVTKLUT.Annotations = []
+displacementduneVTKLUT.ActiveAnnotatedValues = []
+displacementduneVTKLUT.IndexedColors = []
+displacementduneVTKLUT.IndexedOpacities = []
+
+# get opacity transfer function/opacity map for 'DisplacementduneVTK'
+displacementduneVTKPWF = GetOpacityTransferFunction('DisplacementduneVTK')
+displacementduneVTKPWF.Points = [0.0, 0.0, 0.5, 0.0, 0.8880706130633398, 1.0, 0.5, 0.0]
+displacementduneVTKPWF.AllowDuplicateScalars = 1
+displacementduneVTKPWF.UseLogScale = 0
+displacementduneVTKPWF.ScalarRangeInitialized = 1
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Specular = 0.5
+# warpByVector1Display.Specular = 0.3
+
+
+
+# ----- Normal vector field
+# find source
+warpByVector1 = FindSource('WarpByVector1')
+
+# create a new 'Glyph'
+glyph1 = Glyph(registrationName='Glyph1', Input=warpByVector1,
+ GlyphType='Arrow')
+glyph1.OrientationArray = ['POINTS', 'Displacement dune-VTK']
+glyph1.ScaleArray = ['POINTS', 'IsometryErrorFunction']
+glyph1.VectorScaleMode = 'Scale by Magnitude'
+glyph1.ScaleFactor = 0.35000000000000003
+glyph1.GlyphTransform = 'Transform2'
+glyph1.GlyphMode = 'Uniform Spatial Distribution (Bounds Based)'
+glyph1.MaximumNumberOfSamplePoints = 5000
+glyph1.Seed = 10339
+glyph1.Stride = 1
+
+# init the 'Arrow' selected for 'GlyphType'
+glyph1.GlyphType.TipResolution = 100
+glyph1.GlyphType.TipRadius = 0.075
+glyph1.GlyphType.TipLength = 0.35
+glyph1.GlyphType.ShaftResolution = 100
+glyph1.GlyphType.ShaftRadius = 0.015
+glyph1.GlyphType.Invert = 0
+
+# init the 'Transform2' selected for 'GlyphTransform'
+glyph1.GlyphTransform.Translate = [0.0, 0.0, 0.0]
+glyph1.GlyphTransform.Rotate = [0.0, 0.0, 0.0]
+glyph1.GlyphTransform.Scale = [1.0, 1.0, 1.0]
+
+# find source
+box1 = FindSource('Box1')
+
+# Properties modified on glyph1
+glyph1.OrientationArray = ['POINTS', 'SurfaceNormalDiscrete']
+glyph1.ScaleArray = ['POINTS', 'No scale array']
+glyph1.ScaleFactor = 0.1
+
+# get active view
+renderView1 = GetActiveViewOrCreate('RenderView')
+
+# show data in view
+glyph1Display = Show(glyph1, renderView1, 'GeometryRepresentation')
+
+# get 2D transfer function for 'IsometryErrorFunction'
+isometryErrorFunctionTF2D = GetTransferFunction2D('IsometryErrorFunction')
+isometryErrorFunctionTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+isometryErrorFunctionTF2D.Boxes = []
+isometryErrorFunctionTF2D.ScalarRangeInitialized = 0
+isometryErrorFunctionTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+isometryErrorFunctionTF2D.OutputDimensions = [10, 10]
+
+# get color transfer function/color map for 'IsometryErrorFunction'
+isometryErrorFunctionLUT = GetColorTransferFunction('IsometryErrorFunction')
+isometryErrorFunctionLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+isometryErrorFunctionLUT.InterpretValuesAsCategories = 0
+isometryErrorFunctionLUT.AnnotationsInitialized = 0
+isometryErrorFunctionLUT.ShowCategoricalColorsinDataRangeOnly = 0
+isometryErrorFunctionLUT.RescaleOnVisibilityChange = 0
+isometryErrorFunctionLUT.EnableOpacityMapping = 0
+isometryErrorFunctionLUT.TransferFunction2D = isometryErrorFunctionTF2D
+isometryErrorFunctionLUT.Use2DTransferFunction = 0
+isometryErrorFunctionLUT.RGBPoints = [0.0, 0.0, 0.266667, 0.105882, 0.0027490853382647036, 0.0, 0.347374, 0.139346, 0.005498170676529407, 0.000538, 0.427912, 0.172933, 0.00824727792160213, 0.069435, 0.486967, 0.222145, 0.010996363259866833, 0.138178, 0.546082, 0.271326, 0.013745448598131538, 0.197232, 0.609073, 0.31857, 0.01649453393639624, 0.257255, 0.671742, 0.365859, 0.019243619274660943, 0.357647, 0.720953, 0.415071, 0.021992717099806217, 0.45767, 0.769919, 0.465021, 0.024741811857998373, 0.546251, 0.811257, 0.537855, 0.027490897196263075, 0.634295, 0.852211, 0.610688, 0.03023998253452778, 0.709097, 0.883706, 0.683522, 0.03298906787279249, 0.78316, 0.914833, 0.755894, 0.0357381751178652, 0.842215, 0.938454, 0.818885, 0.03848726045612991, 0.899977, 0.961538, 0.880692, 0.04123634579439461, 0.935409, 0.975317, 0.92203, 0.043813616037368774, 0.968627, 0.988235, 0.960784]
+isometryErrorFunctionLUT.UseLogScale = 0
+isometryErrorFunctionLUT.UseOpacityControlPointsFreehandDrawing = 0
+isometryErrorFunctionLUT.ShowDataHistogram = 0
+isometryErrorFunctionLUT.AutomaticDataHistogramComputation = 0
+isometryErrorFunctionLUT.DataHistogramNumberOfBins = 10
+isometryErrorFunctionLUT.ColorSpace = 'Lab'
+isometryErrorFunctionLUT.UseBelowRangeColor = 0
+isometryErrorFunctionLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+isometryErrorFunctionLUT.UseAboveRangeColor = 0
+isometryErrorFunctionLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+isometryErrorFunctionLUT.NanColor = [1.0, 1.0, 0.0]
+isometryErrorFunctionLUT.NanOpacity = 1.0
+isometryErrorFunctionLUT.Discretize = 1
+isometryErrorFunctionLUT.NumberOfTableValues = 256
+isometryErrorFunctionLUT.ScalarRangeInitialized = 1.0
+isometryErrorFunctionLUT.HSVWrap = 0
+isometryErrorFunctionLUT.VectorComponent = 0
+isometryErrorFunctionLUT.VectorMode = 'Magnitude'
+isometryErrorFunctionLUT.AllowDuplicateScalars = 1
+isometryErrorFunctionLUT.Annotations = []
+isometryErrorFunctionLUT.ActiveAnnotatedValues = []
+isometryErrorFunctionLUT.IndexedColors = []
+isometryErrorFunctionLUT.IndexedOpacities = []
+
+# trace defaults for the display properties.
+glyph1Display.Selection = None
+glyph1Display.Representation = 'Surface'
+glyph1Display.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+glyph1Display.LookupTable = isometryErrorFunctionLUT
+glyph1Display.MapScalars = 1
+glyph1Display.MultiComponentsMapping = 0
+glyph1Display.InterpolateScalarsBeforeMapping = 1
+glyph1Display.Opacity = 1.0
+glyph1Display.PointSize = 2.0
+glyph1Display.LineWidth = 1.0
+glyph1Display.RenderLinesAsTubes = 0
+glyph1Display.RenderPointsAsSpheres = 0
+glyph1Display.Interpolation = 'Gouraud'
+glyph1Display.Specular = 0.0
+glyph1Display.SpecularColor = [1.0, 1.0, 1.0]
+glyph1Display.SpecularPower = 100.0
+glyph1Display.Luminosity = 0.0
+glyph1Display.Ambient = 0.0
+glyph1Display.Diffuse = 1.0
+glyph1Display.Roughness = 0.3
+glyph1Display.Metallic = 0.0
+glyph1Display.EdgeTint = [1.0, 1.0, 1.0]
+glyph1Display.Anisotropy = 0.0
+glyph1Display.AnisotropyRotation = 0.0
+glyph1Display.BaseIOR = 1.5
+glyph1Display.CoatStrength = 0.0
+glyph1Display.CoatIOR = 2.0
+glyph1Display.CoatRoughness = 0.0
+glyph1Display.CoatColor = [1.0, 1.0, 1.0]
+glyph1Display.SelectTCoordArray = 'None'
+glyph1Display.SelectNormalArray = 'None'
+glyph1Display.SelectTangentArray = 'None'
+glyph1Display.Texture = None
+glyph1Display.RepeatTextures = 1
+glyph1Display.InterpolateTextures = 0
+glyph1Display.SeamlessU = 0
+glyph1Display.SeamlessV = 0
+glyph1Display.UseMipmapTextures = 0
+glyph1Display.ShowTexturesOnBackface = 1
+glyph1Display.BaseColorTexture = None
+glyph1Display.NormalTexture = None
+glyph1Display.NormalScale = 1.0
+glyph1Display.CoatNormalTexture = None
+glyph1Display.CoatNormalScale = 1.0
+glyph1Display.MaterialTexture = None
+glyph1Display.OcclusionStrength = 1.0
+glyph1Display.AnisotropyTexture = None
+glyph1Display.EmissiveTexture = None
+glyph1Display.EmissiveFactor = [1.0, 1.0, 1.0]
+glyph1Display.FlipTextures = 0
+glyph1Display.BackfaceRepresentation = 'Follow Frontface'
+glyph1Display.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+glyph1Display.BackfaceOpacity = 1.0
+glyph1Display.Position = [0.0, 0.0, 0.0]
+glyph1Display.Scale = [1.0, 1.0, 1.0]
+glyph1Display.Orientation = [0.0, 0.0, 0.0]
+glyph1Display.Origin = [0.0, 0.0, 0.0]
+glyph1Display.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+glyph1Display.Pickable = 1
+glyph1Display.Triangulate = 0
+glyph1Display.UseShaderReplacements = 0
+glyph1Display.ShaderReplacements = ''
+glyph1Display.NonlinearSubdivisionLevel = 1
+glyph1Display.UseDataPartitions = 0
+glyph1Display.OSPRayUseScaleArray = 'All Approximate'
+glyph1Display.OSPRayScaleArray = 'IsometryErrorFunction'
+glyph1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+glyph1Display.OSPRayMaterial = 'None'
+glyph1Display.BlockSelectors = ['/']
+glyph1Display.BlockColors = []
+glyph1Display.BlockOpacities = []
+glyph1Display.Orient = 0
+glyph1Display.OrientationMode = 'Direction'
+glyph1Display.SelectOrientationVectors = 'Displacement dune-VTK'
+glyph1Display.Scaling = 0
+glyph1Display.ScaleMode = 'No Data Scaling Off'
+glyph1Display.ScaleFactor = 0.35175590813159946
+glyph1Display.SelectScaleArray = 'IsometryErrorFunction'
+glyph1Display.GlyphType = 'Arrow'
+glyph1Display.UseGlyphTable = 0
+glyph1Display.GlyphTableIndexArray = 'IsometryErrorFunction'
+glyph1Display.UseCompositeGlyphTable = 0
+glyph1Display.UseGlyphCullingAndLOD = 0
+glyph1Display.LODValues = []
+glyph1Display.ColorByLODIndex = 0
+glyph1Display.GaussianRadius = 0.01758779540657997
+glyph1Display.ShaderPreset = 'Sphere'
+glyph1Display.CustomTriangleScale = 3
+glyph1Display.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+"""
+glyph1Display.Emissive = 0
+glyph1Display.ScaleByArray = 0
+glyph1Display.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+glyph1Display.ScaleArrayComponent = ''
+glyph1Display.UseScaleFunction = 1
+glyph1Display.ScaleTransferFunction = 'PiecewiseFunction'
+glyph1Display.OpacityByArray = 0
+glyph1Display.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+glyph1Display.OpacityArrayComponent = ''
+glyph1Display.OpacityTransferFunction = 'PiecewiseFunction'
+glyph1Display.DataAxesGrid = 'GridAxesRepresentation'
+glyph1Display.SelectionCellLabelBold = 0
+glyph1Display.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+glyph1Display.SelectionCellLabelFontFamily = 'Arial'
+glyph1Display.SelectionCellLabelFontFile = ''
+glyph1Display.SelectionCellLabelFontSize = 18
+glyph1Display.SelectionCellLabelItalic = 0
+glyph1Display.SelectionCellLabelJustification = 'Left'
+glyph1Display.SelectionCellLabelOpacity = 1.0
+glyph1Display.SelectionCellLabelShadow = 0
+glyph1Display.SelectionPointLabelBold = 0
+glyph1Display.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+glyph1Display.SelectionPointLabelFontFamily = 'Arial'
+glyph1Display.SelectionPointLabelFontFile = ''
+glyph1Display.SelectionPointLabelFontSize = 18
+glyph1Display.SelectionPointLabelItalic = 0
+glyph1Display.SelectionPointLabelJustification = 'Left'
+glyph1Display.SelectionPointLabelOpacity = 1.0
+glyph1Display.SelectionPointLabelShadow = 0
+glyph1Display.PolarAxes = 'PolarAxesRepresentation'
+glyph1Display.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+glyph1Display.NumberOfSteps = 40
+glyph1Display.StepSize = 0.25
+glyph1Display.NormalizeVectors = 1
+glyph1Display.EnhancedLIC = 1
+glyph1Display.ColorMode = 'Blend'
+glyph1Display.LICIntensity = 0.8
+glyph1Display.MapModeBias = 0.0
+glyph1Display.EnhanceContrast = 'Off'
+glyph1Display.LowLICContrastEnhancementFactor = 0.0
+glyph1Display.HighLICContrastEnhancementFactor = 0.0
+glyph1Display.LowColorContrastEnhancementFactor = 0.0
+glyph1Display.HighColorContrastEnhancementFactor = 0.0
+glyph1Display.AntiAlias = 0
+glyph1Display.MaskOnSurface = 1
+glyph1Display.MaskThreshold = 0.0
+glyph1Display.MaskIntensity = 0.0
+glyph1Display.MaskColor = [0.5, 0.5, 0.5]
+glyph1Display.GenerateNoiseTexture = 0
+glyph1Display.NoiseType = 'Gaussian'
+glyph1Display.NoiseTextureSize = 128
+glyph1Display.NoiseGrainSize = 2
+glyph1Display.MinNoiseValue = 0.0
+glyph1Display.MaxNoiseValue = 0.8
+glyph1Display.NumberOfNoiseLevels = 1024
+glyph1Display.ImpulseNoiseProbability = 1.0
+glyph1Display.ImpulseNoiseBackgroundValue = 0.0
+glyph1Display.NoiseGeneratorSeed = 1
+glyph1Display.CompositeStrategy = 'AUTO'
+glyph1Display.UseLICForLOD = 0
+glyph1Display.WriteLog = ''
+
+# init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+glyph1Display.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+glyph1Display.OSPRayScaleFunction.UseLogScale = 0
+
+# init the 'Arrow' selected for 'GlyphType'
+glyph1Display.GlyphType.TipResolution = 100
+glyph1Display.GlyphType.TipRadius = 0.075
+glyph1Display.GlyphType.TipLength = 0.35
+glyph1Display.GlyphType.ShaftResolution = 100
+glyph1Display.GlyphType.ShaftRadius = 0.015
+glyph1Display.GlyphType.Invert = 0
+
+# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+glyph1Display.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.042020171880722046, 1.0, 0.5, 0.0]
+glyph1Display.ScaleTransferFunction.UseLogScale = 0
+
+# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+glyph1Display.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.042020171880722046, 1.0, 0.5, 0.0]
+glyph1Display.OpacityTransferFunction.UseLogScale = 0
+
+# init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+glyph1Display.DataAxesGrid.XTitle = 'X Axis'
+glyph1Display.DataAxesGrid.YTitle = 'Y Axis'
+glyph1Display.DataAxesGrid.ZTitle = 'Z Axis'
+glyph1Display.DataAxesGrid.XTitleFontFamily = 'Arial'
+glyph1Display.DataAxesGrid.XTitleFontFile = ''
+glyph1Display.DataAxesGrid.XTitleBold = 0
+glyph1Display.DataAxesGrid.XTitleItalic = 0
+glyph1Display.DataAxesGrid.XTitleFontSize = 12
+glyph1Display.DataAxesGrid.XTitleShadow = 0
+glyph1Display.DataAxesGrid.XTitleOpacity = 1.0
+glyph1Display.DataAxesGrid.YTitleFontFamily = 'Arial'
+glyph1Display.DataAxesGrid.YTitleFontFile = ''
+glyph1Display.DataAxesGrid.YTitleBold = 0
+glyph1Display.DataAxesGrid.YTitleItalic = 0
+glyph1Display.DataAxesGrid.YTitleFontSize = 12
+glyph1Display.DataAxesGrid.YTitleShadow = 0
+glyph1Display.DataAxesGrid.YTitleOpacity = 1.0
+glyph1Display.DataAxesGrid.ZTitleFontFamily = 'Arial'
+glyph1Display.DataAxesGrid.ZTitleFontFile = ''
+glyph1Display.DataAxesGrid.ZTitleBold = 0
+glyph1Display.DataAxesGrid.ZTitleItalic = 0
+glyph1Display.DataAxesGrid.ZTitleFontSize = 12
+glyph1Display.DataAxesGrid.ZTitleShadow = 0
+glyph1Display.DataAxesGrid.ZTitleOpacity = 1.0
+glyph1Display.DataAxesGrid.FacesToRender = 63
+glyph1Display.DataAxesGrid.CullBackface = 0
+glyph1Display.DataAxesGrid.CullFrontface = 1
+glyph1Display.DataAxesGrid.ShowGrid = 0
+glyph1Display.DataAxesGrid.ShowEdges = 1
+glyph1Display.DataAxesGrid.ShowTicks = 1
+glyph1Display.DataAxesGrid.LabelUniqueEdgesOnly = 1
+glyph1Display.DataAxesGrid.AxesToLabel = 63
+glyph1Display.DataAxesGrid.XLabelFontFamily = 'Arial'
+glyph1Display.DataAxesGrid.XLabelFontFile = ''
+glyph1Display.DataAxesGrid.XLabelBold = 0
+glyph1Display.DataAxesGrid.XLabelItalic = 0
+glyph1Display.DataAxesGrid.XLabelFontSize = 12
+glyph1Display.DataAxesGrid.XLabelShadow = 0
+glyph1Display.DataAxesGrid.XLabelOpacity = 1.0
+glyph1Display.DataAxesGrid.YLabelFontFamily = 'Arial'
+glyph1Display.DataAxesGrid.YLabelFontFile = ''
+glyph1Display.DataAxesGrid.YLabelBold = 0
+glyph1Display.DataAxesGrid.YLabelItalic = 0
+glyph1Display.DataAxesGrid.YLabelFontSize = 12
+glyph1Display.DataAxesGrid.YLabelShadow = 0
+glyph1Display.DataAxesGrid.YLabelOpacity = 1.0
+glyph1Display.DataAxesGrid.ZLabelFontFamily = 'Arial'
+glyph1Display.DataAxesGrid.ZLabelFontFile = ''
+glyph1Display.DataAxesGrid.ZLabelBold = 0
+glyph1Display.DataAxesGrid.ZLabelItalic = 0
+glyph1Display.DataAxesGrid.ZLabelFontSize = 12
+glyph1Display.DataAxesGrid.ZLabelShadow = 0
+glyph1Display.DataAxesGrid.ZLabelOpacity = 1.0
+glyph1Display.DataAxesGrid.XAxisNotation = 'Mixed'
+glyph1Display.DataAxesGrid.XAxisPrecision = 2
+glyph1Display.DataAxesGrid.XAxisUseCustomLabels = 0
+glyph1Display.DataAxesGrid.XAxisLabels = []
+glyph1Display.DataAxesGrid.YAxisNotation = 'Mixed'
+glyph1Display.DataAxesGrid.YAxisPrecision = 2
+glyph1Display.DataAxesGrid.YAxisUseCustomLabels = 0
+glyph1Display.DataAxesGrid.YAxisLabels = []
+glyph1Display.DataAxesGrid.ZAxisNotation = 'Mixed'
+glyph1Display.DataAxesGrid.ZAxisPrecision = 2
+glyph1Display.DataAxesGrid.ZAxisUseCustomLabels = 0
+glyph1Display.DataAxesGrid.ZAxisLabels = []
+glyph1Display.DataAxesGrid.UseCustomBounds = 0
+glyph1Display.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+# init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+glyph1Display.PolarAxes.Visibility = 0
+glyph1Display.PolarAxes.Translation = [0.0, 0.0, 0.0]
+glyph1Display.PolarAxes.Scale = [1.0, 1.0, 1.0]
+glyph1Display.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+glyph1Display.PolarAxes.EnableCustomBounds = [0, 0, 0]
+glyph1Display.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+glyph1Display.PolarAxes.EnableCustomRange = 0
+glyph1Display.PolarAxes.CustomRange = [0.0, 1.0]
+glyph1Display.PolarAxes.PolarAxisVisibility = 1
+glyph1Display.PolarAxes.RadialAxesVisibility = 1
+glyph1Display.PolarAxes.DrawRadialGridlines = 1
+glyph1Display.PolarAxes.PolarArcsVisibility = 1
+glyph1Display.PolarAxes.DrawPolarArcsGridlines = 1
+glyph1Display.PolarAxes.NumberOfRadialAxes = 0
+glyph1Display.PolarAxes.AutoSubdividePolarAxis = 1
+glyph1Display.PolarAxes.NumberOfPolarAxis = 0
+glyph1Display.PolarAxes.MinimumRadius = 0.0
+glyph1Display.PolarAxes.MinimumAngle = 0.0
+glyph1Display.PolarAxes.MaximumAngle = 90.0
+glyph1Display.PolarAxes.RadialAxesOriginToPolarAxis = 1
+glyph1Display.PolarAxes.Ratio = 1.0
+glyph1Display.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+glyph1Display.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+glyph1Display.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+glyph1Display.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+glyph1Display.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+glyph1Display.PolarAxes.PolarAxisTitleVisibility = 1
+glyph1Display.PolarAxes.PolarAxisTitle = 'Radial Distance'
+glyph1Display.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+glyph1Display.PolarAxes.PolarLabelVisibility = 1
+glyph1Display.PolarAxes.PolarLabelFormat = '%-#6.3g'
+glyph1Display.PolarAxes.PolarLabelExponentLocation = 'Labels'
+glyph1Display.PolarAxes.RadialLabelVisibility = 1
+glyph1Display.PolarAxes.RadialLabelFormat = '%-#3.1f'
+glyph1Display.PolarAxes.RadialLabelLocation = 'Bottom'
+glyph1Display.PolarAxes.RadialUnitsVisibility = 1
+glyph1Display.PolarAxes.ScreenSize = 10.0
+glyph1Display.PolarAxes.PolarAxisTitleOpacity = 1.0
+glyph1Display.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+glyph1Display.PolarAxes.PolarAxisTitleFontFile = ''
+glyph1Display.PolarAxes.PolarAxisTitleBold = 0
+glyph1Display.PolarAxes.PolarAxisTitleItalic = 0
+glyph1Display.PolarAxes.PolarAxisTitleShadow = 0
+glyph1Display.PolarAxes.PolarAxisTitleFontSize = 12
+glyph1Display.PolarAxes.PolarAxisLabelOpacity = 1.0
+glyph1Display.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+glyph1Display.PolarAxes.PolarAxisLabelFontFile = ''
+glyph1Display.PolarAxes.PolarAxisLabelBold = 0
+glyph1Display.PolarAxes.PolarAxisLabelItalic = 0
+glyph1Display.PolarAxes.PolarAxisLabelShadow = 0
+glyph1Display.PolarAxes.PolarAxisLabelFontSize = 12
+glyph1Display.PolarAxes.LastRadialAxisTextOpacity = 1.0
+glyph1Display.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+glyph1Display.PolarAxes.LastRadialAxisTextFontFile = ''
+glyph1Display.PolarAxes.LastRadialAxisTextBold = 0
+glyph1Display.PolarAxes.LastRadialAxisTextItalic = 0
+glyph1Display.PolarAxes.LastRadialAxisTextShadow = 0
+glyph1Display.PolarAxes.LastRadialAxisTextFontSize = 12
+glyph1Display.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+glyph1Display.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+glyph1Display.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+glyph1Display.PolarAxes.SecondaryRadialAxesTextBold = 0
+glyph1Display.PolarAxes.SecondaryRadialAxesTextItalic = 0
+glyph1Display.PolarAxes.SecondaryRadialAxesTextShadow = 0
+glyph1Display.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+glyph1Display.PolarAxes.EnableDistanceLOD = 1
+glyph1Display.PolarAxes.DistanceLODThreshold = 0.7
+glyph1Display.PolarAxes.EnableViewAngleLOD = 1
+glyph1Display.PolarAxes.ViewAngleLODThreshold = 0.7
+glyph1Display.PolarAxes.SmallestVisiblePolarAngle = 0.5
+glyph1Display.PolarAxes.PolarTicksVisibility = 1
+glyph1Display.PolarAxes.ArcTicksOriginToPolarAxis = 1
+glyph1Display.PolarAxes.TickLocation = 'Both'
+glyph1Display.PolarAxes.AxisTickVisibility = 1
+glyph1Display.PolarAxes.AxisMinorTickVisibility = 0
+glyph1Display.PolarAxes.ArcTickVisibility = 1
+glyph1Display.PolarAxes.ArcMinorTickVisibility = 0
+glyph1Display.PolarAxes.DeltaAngleMajor = 10.0
+glyph1Display.PolarAxes.DeltaAngleMinor = 5.0
+glyph1Display.PolarAxes.PolarAxisMajorTickSize = 0.0
+glyph1Display.PolarAxes.PolarAxisTickRatioSize = 0.3
+glyph1Display.PolarAxes.PolarAxisMajorTickThickness = 1.0
+glyph1Display.PolarAxes.PolarAxisTickRatioThickness = 0.5
+glyph1Display.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+glyph1Display.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+glyph1Display.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+glyph1Display.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+glyph1Display.PolarAxes.ArcMajorTickSize = 0.0
+glyph1Display.PolarAxes.ArcTickRatioSize = 0.3
+glyph1Display.PolarAxes.ArcMajorTickThickness = 1.0
+glyph1Display.PolarAxes.ArcTickRatioThickness = 0.5
+glyph1Display.PolarAxes.Use2DMode = 0
+glyph1Display.PolarAxes.UseLogAxis = 0
+
+# show color bar/color legend
+glyph1Display.SetScalarBarVisibility(renderView1, True)
+
+# find source
+buckling_experiment_rho10_level3_NCvtu = FindSource('buckling_experiment_rho10_level3_NC.vtu')
+
+# find source
+box2 = FindSource('Box2')
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# get opacity transfer function/opacity map for 'IsometryErrorFunction'
+isometryErrorFunctionPWF = GetOpacityTransferFunction('IsometryErrorFunction')
+isometryErrorFunctionPWF.Points = [0.0, 0.0, 0.5, 0.0, 0.043813616037368774, 1.0, 0.5, 0.0]
+isometryErrorFunctionPWF.AllowDuplicateScalars = 1
+isometryErrorFunctionPWF.UseLogScale = 0
+isometryErrorFunctionPWF.ScalarRangeInitialized = 1
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# Properties modified on glyph1
+glyph1.GlyphMode = 'Every Nth Point'
+glyph1.Stride = 15
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# turn off scalar coloring
+ColorBy(glyph1Display, None)
+
+# Hide the scalar bar for this color map if no visible data is colored by it.
+HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+# change solid color
+glyph1Display.AmbientColor = [0.0, 0.0, 0.0]
+glyph1Display.DiffuseColor = [0.0, 0.0, 0.0]
+
+# Properties modified on glyph1Display
+glyph1Display.Opacity = 0.75
+
+# Properties modified on glyph1Display
+glyph1Display.Opacity = 0.25
+
+# Properties modified on glyph1Display
+glyph1Display.Opacity = 0.5
+
+# # Properties modified on glyph1Display
+# glyph1Display.Opacity = 1.0
+
+###############################
+
+
+
+
+### Nice Camera Angle:
+# get active view
+renderView1 = GetActiveViewOrCreate('RenderView')
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995387, -6.373117888516298, 3.0455402693025477]
+renderView1.CameraFocalPoint = [1.7499999999999973, 0.49948221910744894, 0.03305599093437161]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.4285092855481871
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995387, -6.373117888516298, 3.0455402693025477]
+renderView1.CameraFocalPoint = [1.7499999999999973, 0.49948221910744894, 0.03305599093437161]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.4285092855481871
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995387, -6.373117888516298, 3.0455402693025477]
+renderView1.CameraFocalPoint = [1.7499999999999973, 0.49948221910744894, 0.03305599093437161]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.4285092855481871
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995387, -6.373117888516298, 3.0455402693025477]
+renderView1.CameraFocalPoint = [1.7499999999999973, 0.49948221910744894, 0.03305599093437161]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.4285092855481871
+
+# reset view to fit data
+renderView1.ResetCamera(True)
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+# reset view to fit data bounds
+renderView1.ResetCamera(-0.0070663392543792725, 3.507066249847412, -0.020176716148853302, 1.0201082229614258, -0.879596471786499, 0.0999700278043747, False)
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-0.9127173710767202, -5.7533624403677806, 2.3512240239158935]
+renderView1.CameraFocalPoint = [1.7499999552965164, 0.49996575340628624, -0.38981322199106216]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.8967650839948296
+
+# reset view to fit data
+renderView1.ResetCamera(True)
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+# reset view to fit data bounds
+renderView1.ResetCamera(-0.0070663392543792725, 3.507066249847412, -0.020176716148853302, 1.0201082229614258, -0.879596471786499, 0.0999700278043747, True)
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-0.9127173710767202, -5.7533624403677806, 2.3512240239158935]
+renderView1.CameraFocalPoint = [1.7499999552965164, 0.49996575340628624, -0.38981322199106216]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 0.9539530708784568
+
+# reset view to fit data
+renderView1.ResetCamera(True)
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+
+
+# Replace colormap by solid color and use LIGHTING View
+# set active source
+SetActiveSource(warpByVector1)
+
+# get active view
+renderView1 = GetActiveViewOrCreate('RenderView')
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+# get 2D transfer function for 'DisplacementduneVTK'
+displacementduneVTKTF2D = GetTransferFunction2D('DisplacementduneVTK')
+displacementduneVTKTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+displacementduneVTKTF2D.Boxes = []
+displacementduneVTKTF2D.ScalarRangeInitialized = 0
+displacementduneVTKTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+displacementduneVTKTF2D.OutputDimensions = [10, 10]
+
+# get color transfer function/color map for 'DisplacementduneVTK'
+displacementduneVTKLUT = GetColorTransferFunction('DisplacementduneVTK')
+displacementduneVTKLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+displacementduneVTKLUT.InterpretValuesAsCategories = 0
+displacementduneVTKLUT.AnnotationsInitialized = 0
+displacementduneVTKLUT.ShowCategoricalColorsinDataRangeOnly = 0
+displacementduneVTKLUT.RescaleOnVisibilityChange = 0
+displacementduneVTKLUT.EnableOpacityMapping = 0
+displacementduneVTKLUT.TransferFunction2D = displacementduneVTKTF2D
+displacementduneVTKLUT.Use2DTransferFunction = 0
+displacementduneVTKLUT.RGBPoints = [0.0, 0.0, 0.266667, 0.105882, 0.05572199061665925, 0.0, 0.347374, 0.139346, 0.1114439812333185, 0.000538, 0.427912, 0.172933, 0.1671664158852843, 0.069435, 0.486967, 0.222145, 0.22288840650194355, 0.138178, 0.546082, 0.271326, 0.2786103971186028, 0.197232, 0.609073, 0.31857, 0.334332387735262, 0.257255, 0.671742, 0.365859, 0.3900543783519213, 0.357647, 0.720953, 0.415071, 0.4457766220687053, 0.45767, 0.769919, 0.465021, 0.5014988036205464, 0.546251, 0.811257, 0.537855, 0.5572207942372056, 0.634295, 0.852211, 0.610688, 0.6129427848538649, 0.709097, 0.883706, 0.683522, 0.6686647754705242, 0.78316, 0.914833, 0.755894, 0.7243872101224899, 0.842215, 0.938454, 0.818885, 0.7801092007391492, 0.899977, 0.961538, 0.880692, 0.8358311913558085, 0.935409, 0.975317, 0.92203, 0.8880706130633398, 0.968627, 0.988235, 0.960784]
+displacementduneVTKLUT.UseLogScale = 0
+displacementduneVTKLUT.UseOpacityControlPointsFreehandDrawing = 0
+displacementduneVTKLUT.ShowDataHistogram = 0
+displacementduneVTKLUT.AutomaticDataHistogramComputation = 0
+displacementduneVTKLUT.DataHistogramNumberOfBins = 10
+displacementduneVTKLUT.ColorSpace = 'Lab'
+displacementduneVTKLUT.UseBelowRangeColor = 0
+displacementduneVTKLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+displacementduneVTKLUT.UseAboveRangeColor = 0
+displacementduneVTKLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+displacementduneVTKLUT.NanColor = [1.0, 1.0, 0.0]
+displacementduneVTKLUT.NanOpacity = 1.0
+displacementduneVTKLUT.Discretize = 1
+displacementduneVTKLUT.NumberOfTableValues = 256
+displacementduneVTKLUT.ScalarRangeInitialized = 1.0
+displacementduneVTKLUT.HSVWrap = 0
+displacementduneVTKLUT.VectorComponent = 0
+displacementduneVTKLUT.VectorMode = 'Magnitude'
+displacementduneVTKLUT.AllowDuplicateScalars = 1
+displacementduneVTKLUT.Annotations = []
+displacementduneVTKLUT.ActiveAnnotatedValues = []
+displacementduneVTKLUT.IndexedColors = []
+displacementduneVTKLUT.IndexedOpacities = []
+
+# get opacity transfer function/opacity map for 'DisplacementduneVTK'
+displacementduneVTKPWF = GetOpacityTransferFunction('DisplacementduneVTK')
+displacementduneVTKPWF.Points = [0.0, 0.0, 0.5, 0.0, 0.8880706130633398, 1.0, 0.5, 0.0]
+displacementduneVTKPWF.AllowDuplicateScalars = 1
+displacementduneVTKPWF.UseLogScale = 0
+displacementduneVTKPWF.ScalarRangeInitialized = 1
+
+# get display properties
+warpByVector1Display = GetDisplayProperties(warpByVector1, view=renderView1)
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+# turn off scalar coloring
+ColorBy(warpByVector1Display, None)
+
+# Hide the scalar bar for this color map if no visible data is colored by it.
+HideScalarBarIfNotNeeded(displacementduneVTKLUT, renderView1)
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+# change solid color
+warpByVector1Display.AmbientColor = [0.2901960784313726, 0.5843137254901961, 0.43137254901960786]
+warpByVector1Display.DiffuseColor = [0.2901960784313726, 0.5843137254901961, 0.43137254901960786]
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Ambient = 0.2
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Ambient = 0.15
+warpByVector1Display.Ambient = 0.3
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+# change solid color
+warpByVector1Display.AmbientColor = [0.3254901960784314, 0.6549019607843137, 0.47843137254901963]
+warpByVector1Display.DiffuseColor = [0.3254901960784314, 0.6549019607843137, 0.47843137254901963]
+# Adjust camera
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+
+
+
+renderView1.UseLight = 0
+# Create a new 'Light'
+light1 = AddLight(view=renderView1)
+light1.Enable = 1
+light1.Coords = 'Scene'
+light1.Intensity = 1.0
+light1.Type = 'Directional'
+light1.Position = [0.0, 0.0, 1.0]
+light1.FocalPoint = [0.0, 0.0, 0.0]
+light1.DiffuseColor = [1.0, 1.0, 1.0]
+light1.ConeAngle = 30.0
+light1.Radius = 0.0
+
+# toggle interactive widget visibility (only when running from the GUI)
+ShowInteractiveWidgets(proxy=light1)
+
+#update a light
+light1.Position = [-0.9716648057044535, -5.891721101441701, 3.2497098661047565]
+light1.FocalPoint = [1.75, 0.5000438429415226, 0.44799128733575344]
+
+#update a light
+light1.Position = [-0.9716648057044535, -5.891721101441701, 3.2497098661047565]
+light1.FocalPoint = [1.75, 0.5000438429415226, 0.44799128733575344]
+
+# Properties modified on light1
+light1.Type = 'Positional'
+
+# Properties modified on light1
+light1.Intensity = 1.75
+
+# Properties modified on light1
+light1.Position = [2.5, -5.891721101441701, 3.2497098661047565]
+
+# Properties modified on light1
+light1.Position = [2.5, 10.0, 3.2497098661047565]
+
+# Properties modified on light1
+# light1.Position = [2.5, 10.0, 7.0]
+light1.Position = [5, 12, 8.5]
+
+# Properties modified on light1
+light1.FocalPoint = [0.75, 0.5000438429415226, 0.44799128733575344]
+
+# Properties modified on light1
+light1.FocalPoint = [0.75, 0.768, 0.44799128733575344]
+
+# Properties modified on light1
+light1.FocalPoint = [0.75, 0.768, 0.5]
+
+#================================================================
+# addendum: following script captures some of the application
+# state to faithfully reproduce the visualization during playback
+#================================================================
+
+# # get layout
+# layout1 = GetLayout()
+
+# #--------------------------------
+# # saving layout sizes for layouts
+
+# # layout/tab size in pixels
+# layout1.SetSize(850, 750)
+#####################################################################
+
+
+
+
+
+
+
+
+
+
+
+#================================================================
+# addendum: following script captures some of the application
+# state to faithfully reproduce the visualization during playback
+#================================================================
+
+# get layout
+layout1 = GetLayout()
+
+#--------------------------------
+# saving layout sizes for layouts
+
+# layout/tab size in pixels
+layout1.SetSize(2923, 908)
+
+#-----------------------------------
+# saving camera placements for views
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+renderView1.CameraParallelScale = 1.3953474628479614
+
+
+
+# reset view to fit data
+renderView1.ResetCamera(True)
+# --------------------------------------------------------------
+
+
+# #TEST:Set Size in Pixels:
+# # layout/tab size in pixels
+# layout1.SetSize(850, 750)
+# reset view to fit data
+renderView1.ResetCamera(True)
+
+# layout1.SetSize(2560, 1440)
+layout1.SetSize(2257, 1395)
+# layout1.SetSize(4514, 2790)
+# layout1.SetSize(4514, 4514)
+
+# reset view to fit data
+renderView1.ResetCamera(True)
+
+
+
+# Write to pdf
+# ExportView(outputName + '.pdf', view=renderView1)
+
+ExportView(outputName + '.pdf', view=renderView1, Plottitle='ParaView GL2PS Export',
+ Compressoutputfile=0,
+ Drawbackground=1,
+ Cullhiddenprimitives=1,
+ Linewidthscalingfactor=0.714,
+ Pointsizescalingfactor=0.714,
+ GL2PSdepthsortmethod='Simple sorting (fast, good)',
+ Rasterize3Dgeometry=1,
+ Dontrasterizecubeaxes=1,
+ Rendertextaspaths=1)
+
+
+# # get layout
+layout1 = GetLayout()
+
+# layout1.SetSize(850, 750)
+layout1.SetSize(2257, 1395)
+# layout1.SetSize(4514, 4514)
+
+
+
+# # get active view
+# renderView1 = GetActiveViewOrCreate('RenderView')
+
+# # get layout
+# layout1 = GetLayout()
+
+# # layout/tab size in pixels
+# layout1.SetSize(2922, 908)
+
+# # current camera placement for renderView1
+# renderView1.InteractionMode = '2D'
+# renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+# renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+# renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+# renderView1.CameraParallelScale = 1.3953474628479614
+
+# save screenshot
+SaveScreenshot(outputName + '.png', renderView1, ImageResolution=[5844, 1816],
+ FontScaling='Scale fonts proportionally',
+ OverrideColorPalette='WhiteBackground',
+ StereoMode='No change',
+ TransparentBackground=0,
+ # PNG options
+ CompressionLevel='5',
+ MetaData=['Application', 'ParaView'])
+
+# SaveScreenshot(outputName + '.png', renderView1, ImageResolution=[1500, 1240],
+# FontScaling='Scale fonts proportionally',
+# OverrideColorPalette='WhiteBackground',
+# StereoMode='No change',
+# TransparentBackground=0,
+# # PNG options
+# CompressionLevel='5',
+# MetaData=['Application', 'ParaView'])
+
+
+# # export view
+# ExportView('/home/klaus/Desktop/output.pdf', view=renderView1, Plottitle='ParaView GL2PS Export',
+# Compressoutputfile=0,
+# Drawbackground=1,
+# Cullhiddenprimitives=1,
+# Linewidthscalingfactor=0.714,
+# Pointsizescalingfactor=0.714,
+# GL2PSdepthsortmethod='Simple sorting (fast, good)',
+# Rasterize3Dgeometry=1,
+# Dontrasterizecubeaxes=1,
+# Rendertextaspaths=1)
+
+#================================================================
+# addendum: following script captures some of the application
+# state to faithfully reproduce the visualization during playback
+#================================================================
+
+# # get layout
+# layout1 = GetLayout()
+
+# #--------------------------------
+# # saving layout sizes for layouts
+
+# # layout/tab size in pixels
+# layout1.SetSize(2923, 908)
+
+# #-----------------------------------
+# # saving camera placements for views
+
+# # current camera placement for renderView1
+# renderView1.CameraPosition = [6.037484195894283, 4.7874841893168165, 4.688562068036481]
+# renderView1.CameraFocalPoint = [1.75, 0.4999999934225343, 0.4010778721421957]
+# renderView1.CameraViewUp = [-0.7071067811865478, 8.326672684688675e-17, 0.7071067811865474]
+# renderView1.CameraParallelScale = 1.922026583673492
+
+#--------------------------------------------
+# uncomment the following to render all views
+# RenderAllViews()
+# alternatively, if you want to write images, you can use SaveScreenshot(...).
\ No newline at end of file
diff --git a/experiment/macro-problem/buckling_experiment/buckling_experiment.py b/experiment/macro-problem/buckling_experiment/buckling_experiment.py
index 4686e42cbf3de28da8ac993772bc81763dd4c2f7..4f21698710221c5d3112e83a064f1f24a660cff1 100644
--- a/experiment/macro-problem/buckling_experiment/buckling_experiment.py
+++ b/experiment/macro-problem/buckling_experiment/buckling_experiment.py
@@ -21,18 +21,29 @@ parameterSet = ParameterSet()
parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_buckling_experiment'
parameterSet.baseName= 'buckling_experiment'
+
+
+"""
+ ----- MACRO-PROBLEM PARAMETERS: -----
+"""
+
#############################################
-# Grid parameters
+# Macro-Grid parameters
#############################################
+# nX=8
+# nY=8
+# nX=4
+# nY=4
nX=8
-nY=8
+nY=2
+
parameterSet.structuredGrid = 'simplex'
parameterSet.lower = '0 0'
parameterSet.upper = '4 1'
parameterSet.elements = str(nX)+' '+ str(nY)
-parameterSet.macroGridLevel = 3
+parameterSet.macroGridLevel = 1
parameterSet.macroQuadOrder = 6
@@ -61,6 +72,8 @@ parameterSet.initialRegularization = 2000
# Measure convergence
parameterSet.instrumented = 0
+# parameterSet.regularizationNorm = 'Euclidean'
+parameterSet.regularizationNorm = 'H1semi'
# --- (optional) Riemannian Trust-region solver:
@@ -99,8 +112,8 @@ parameterSet.writeVTK = 1
parameterSet.vtkwrite_analyticalSolution = 0
parameterSet.vtkWrite_analyticalSurfaceNormal = 0
-# The grid can be refined several times for a higher resolution in the VTK-file.
-parameterSet.subsamplingRefinement = 2
+# # The grid can be refined several times for a higher resolution in the VTK-file.
+# parameterSet.subsamplingRefinement = 2
# Write Dof-Vector to .txt-file
parameterSet.writeDOFvector = 0
@@ -152,13 +165,6 @@ def dirichlet_indicator(x) :
#############################################
# Initial iterate function
#############################################
-# def f(x):
-# return [x[0], x[1], 0]
-
-# def df(x):
-# return ((1,0),
-# (0,1),
-# (0,0))
#Rotation:
def R(beta):
return [[math.cos(beta),0],
@@ -176,8 +182,9 @@ def f(x):
return [x[0], x[1], 0]
+### Rotation angle (boundary condition).
# beta = math.pi/4.0
-beta= 0.05
+beta= 0.025
# beta= math.pi/12.0
# beta= 0.10
# beta = 0
@@ -198,22 +205,6 @@ def df(x):
-# def f(x):
-# # a = 0.4
-# a = 1.4
-# if(x[0] <= -1.99):
-# return [x[0] + a, x[1], 0]
-# elif(x[0] >= 1.99):
-# return [x[0] - a, x[1], 0]
-# else:
-# return [x[0], x[1], 0]
-
-
-# def df(x):
-# return ((1,0),
-# (0,1),
-# (0,0))
-
fdf = (f, df)
@@ -226,8 +217,6 @@ parameterSet.assemble_force_term = False
def force(x):
return [0, 0, 0]
-
-
#############################################
# Analytical reference Solution
#############################################
@@ -236,9 +225,6 @@ def force(x):
#############################################
# MICROSTRUCTURE
############################################
-
-
-parameterSet.printMicroOutput = False
parameterSet.VTKwriteMacroPhaseIndicator = True
parameterSet.MacroPhaseSubsamplingRefinement = 3
@@ -279,19 +265,30 @@ class GlobalMicrostructure:
# Represents the local microstructure in Phase 1
class LocalMicrostructure_1:
+
+ # prestrain parameter
+ rho = 0.0
+
def __init__(self,macroPoint=[0,0]):
# gamma = 1.0
# self.macroPoint = macroPoint
self.gamma = 1.0 #in the future this might change depending on macroPoint.
-
self.phases = 2 #in the future this might change depending on macroPoint.
#--- Define different material phases:
+ # #- PHASE 1
+ # self.phase1_type="isotropic"
+ # self.materialParameters_phase1 = [200, 1.0]
+ # #- PHASE 2
+ # self.phase2_type="isotropic"
+ # self.materialParameters_phase2 = [100, 1.0]
+
#- PHASE 1
self.phase1_type="isotropic"
- self.materialParameters_phase1 = [200, 1.0]
+ self.materialParameters_phase1 = [28.7,22.5] # glass (Fibre)
+
#- PHASE 2
- self.phase2_type="isotropic"
- self.materialParameters_phase2 = [100, 1.0]
+ self.phase2_type="isotropic"
+ self.materialParameters_phase2 = [1.2,2.58] #Matrix-material: polystyrene
# self.effectivePrestrain= np.array([[-0.725, 0.0],
# [0.0, -1.0]]);
@@ -300,68 +297,118 @@ class GlobalMicrostructure:
# [0.8, 20.3, 0.0],
# [0.0, 0.0, 19.3]]);
-
#--- Indicator function for material phases
def indicatorFunction(self,x):
- # if (abs(x[0]) < (theta/2) and x[2] >= 0 ):
- if (abs(x[0]) < (1.0/4.0) and x[2] <= 0 ):
+ fibreRadius = (1.0/4.0)
+ # if (abs(x[0]) < fibreRadius and x[2] <= 0 ): #bottom x2_aligned fibre
+ # if (abs(x[0]) < fibreRadius and x[2] >= 0 ): #top x2_aligned fibre
+ if (abs(x[1]) < fibreRadius and x[2] >= 0 ): #top x1_aligned fibre
+ # if (abs(x[1]) < fibreRadius and x[2] <= 0 ): #bottom x1_aligned fibre
+ # if (abs(x[1]) < fibreRadius and x[2] >= 0 ): #top x1_aligned fibre
return 1 #Phase1
else :
return 2 #Phase2
#--- Define prestrain function for each phase (also works with non-constant values)
def prestrain_phase1(self,x):
- # return [[2, 0, 0], [0,2,0], [0,0,2]]
- # rho = 1.0
- rho = 1.0
- return [[rho*1.0, 0, 0], [0,rho*1.0,0], [0,0,rho*1.0]]
+ return [[self.rho*1.0, 0, 0], [0,self.rho*1.0,0], [0,0,self.rho*1.0]]
def prestrain_phase2(self,x):
return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+
+ #TEST: Use three-phase-composite:
+ # class LocalMicrostructure_1:
+ # def __init__(self,macroPoint=[0,0]):
+
+ # self.gamma = 1.0 #in the future this might change depending on macroPoint.
+ # self.phases = 3 #in the future this might change depending on macroPoint.
+ # #--- Define different material phases:
+ # #- PHASE 1
+ # self.phase1_type="isotropic"
+ # self.materialParameters_phase1 = [200, 1.0]
+ # #- PHASE 2
+ # self.phase2_type="isotropic"
+ # self.materialParameters_phase2 = [200, 1.0]
+ # #- PHASE 3
+ # self.phase3_type="isotropic"
+ # # self.materialParameters_phase3 = [100, 1.0] #(Matrix-material)
+ # self.materialParameters_phase3 = [50, 0.5] #(Matrix-material)
+
+ # #--- Three-phase composite phase indicator
+ # def indicatorFunction(self,x):
+ # # l = 1.0/4.0 # center point of fibre with quadratic cross section of area r**2
+ # # # l = 3.0/8.0 # center point of fibre with quadratic cross section of area r**2
+ # # r = 1.0/4.0
+ # # if (np.max([abs(x[2]-l), abs(x[1]-0.5)]) < r):
+ # fibreRadius = 1.0/4.0
+ # if (abs(x[0]) < fibreRadius and x[2] > 0 ):
+ # return 1 #Phase1
+ # elif (abs(x[1]) < fibreRadius and x[2] < 0 ):
+ # return 2 #Phase2
+ # else :
+ # return 3 #Phase3
+
+ # # prestrained fibre in top layer , e2-aligned
+ # def prestrain_phase1(self,x):
+ # return [[1.0, 0, 0], [0,1.0,0], [0,0,1.0]]
+
+ # # prestrained fibre in bottom layer , e1-aligned
+ # def prestrain_phase2(self,x):
+ # #prestrain ratio
+ # rho = 0.0
+ # return [[rho*1.0, 0, 0], [0,rho*1.0,0], [0,0,rho*1.0]]
+
+ # # no prestrain in matrix-material
+ # def prestrain_phase3(self,x):
+ # return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+
+
+"""
+ ----- MICRO-PROBLEM PARAMETERS: -----
+"""
+
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
#############################################
-# Grid parameters
+# Micro-Grid parameters
#############################################
parameterSet.microGridLevel = 3
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
-parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
+parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
-# --- write effective quantities (Qhom,Beff) to .txt-files
-# Qhom is written as a Coefficient-matrix
-# Beff is written as Coefficient-vector
+# --- write effective quantities (Qhom.Beff) to .txt-files
parameterSet.write_EffectiveQuantitiesToTxt = True
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/macro-problem/buckling_experiment/buckling_experiment_Top.py b/experiment/macro-problem/buckling_experiment/buckling_experiment_Top.py
index 845c02a0967a46b7a7223c0821bb129df67bbd56..1fb45bd8b46713ffe3f63f16d57b7c556efbdfe3 100644
--- a/experiment/macro-problem/buckling_experiment/buckling_experiment_Top.py
+++ b/experiment/macro-problem/buckling_experiment/buckling_experiment_Top.py
@@ -122,8 +122,6 @@ parameterSet.macroscopically_varying_microstructure = False
parameterSet.read_effectiveQuantities_from_Parset = False # Otherwise the Micro/Cell-Problem is solved once to obtain the quantities.
# parameterSet.read_effectiveQuantities_from_Parset = True # Otherwise the Micro/Cell-Problem is solved once to obtain the quantities.
-parameterSet.printMicroOutput = False
-
# parameterSet.read_effectiveQuantities_from_Parset = True
effectivePrestrain= np.array([[-0.725, 0.0],
[0.0, -1.0]]);
@@ -230,9 +228,7 @@ def force(x):
##################### MICROSCALE PROBLEM ####################
-
# Microstructure used: Isotropic matrix material (phase 2) with prestrained fibers (phase 1) in the top layer aligned with the e2-direction.
-
class Microstructure:
def __init__(self):
# self.macroPoint = macroPoint
@@ -313,6 +309,7 @@ class Microstructure:
# return [[0, 0, 0], [0,0,0], [0,0,0]]
+parameterSet.printMicroOutput = 0 # Flag that allows to supress the output of the micro-problem.
#############################################
# Grid parameters
@@ -322,36 +319,35 @@ parameterSet.microGridLevel = 3
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
-parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
+parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/macro-problem/buckling_experiment/buckling_experiment_rho_0.py b/experiment/macro-problem/buckling_experiment/buckling_experiment_rho_0.py
new file mode 100644
index 0000000000000000000000000000000000000000..b6795df7e2ca9d48d02e4fdf3d8dd19797297a44
--- /dev/null
+++ b/experiment/macro-problem/buckling_experiment/buckling_experiment_rho_0.py
@@ -0,0 +1,5 @@
+from buckling_experiment import*
+
+
+# Change parameter
+GlobalMicrostructure.LocalMicrostructure_1.rho = 0.0
\ No newline at end of file
diff --git a/experiment/macro-problem/buckling_experiment/buckling_experiment_rho_1.py b/experiment/macro-problem/buckling_experiment/buckling_experiment_rho_1.py
new file mode 100644
index 0000000000000000000000000000000000000000..efab639c1b0ee5ea5320748caf24893074966dde
--- /dev/null
+++ b/experiment/macro-problem/buckling_experiment/buckling_experiment_rho_1.py
@@ -0,0 +1,4 @@
+from buckling_experiment import*
+
+# Change parameter
+GlobalMicrostructure.LocalMicrostructure_1.rho = 1.0
\ No newline at end of file
diff --git a/experiment/macro-problem/buckling_experiment/buckling_experiment_xAlignedLow.py b/experiment/macro-problem/buckling_experiment/buckling_experiment_xAlignedLow.py
index 24db5dad9a647c59b48c8b8bdc4d91ed0c961ae7..acec0ac7cffc1171284e109b88fc19111a7e0f5d 100644
--- a/experiment/macro-problem/buckling_experiment/buckling_experiment_xAlignedLow.py
+++ b/experiment/macro-problem/buckling_experiment/buckling_experiment_xAlignedLow.py
@@ -122,7 +122,6 @@ parameterSet.macroscopically_varying_microstructure = False
parameterSet.read_effectiveQuantities_from_Parset = False # Otherwise the Micro/Cell-Problem is solved once to obtain the quantities.
# parameterSet.read_effectiveQuantities_from_Parset = True # Otherwise the Micro/Cell-Problem is solved once to obtain the quantities.
-parameterSet.printMicroOutput = False
# parameterSet.read_effectiveQuantities_from_Parset = True
effectivePrestrain= np.array([[-0.725, 0.0],
@@ -315,6 +314,8 @@ class Microstructure:
+parameterSet.printMicroOutput = 0 # Flag that allows to supress the output of the micro-problem.
+
#############################################
# Grid parameters
#############################################
@@ -323,36 +324,35 @@ parameterSet.microGridLevel = 3
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
-parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
+parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
\ No newline at end of file
diff --git a/experiment/macro-problem/buckling_experiment/buckling_experiment_xAlignedTop.py b/experiment/macro-problem/buckling_experiment/buckling_experiment_xAlignedTop.py
index 2ce12efdb4069d2cd5f49474bc75d07f45c1b816..5080cbbbbec8b4192fceb7ad0c069c565d43fa1a 100644
--- a/experiment/macro-problem/buckling_experiment/buckling_experiment_xAlignedTop.py
+++ b/experiment/macro-problem/buckling_experiment/buckling_experiment_xAlignedTop.py
@@ -122,8 +122,6 @@ parameterSet.macroscopically_varying_microstructure = False
parameterSet.read_effectiveQuantities_from_Parset = False # Otherwise the Micro/Cell-Problem is solved once to obtain the quantities.
# parameterSet.read_effectiveQuantities_from_Parset = True # Otherwise the Micro/Cell-Problem is solved once to obtain the quantities.
-parameterSet.printMicroOutput = False
-
# parameterSet.read_effectiveQuantities_from_Parset = True
effectivePrestrain= np.array([[-0.725, 0.0],
[0.0, -1.0]]);
@@ -314,6 +312,7 @@ class Microstructure:
# return [[0, 0, 0], [0,0,0], [0,0,0]]
+parameterSet.printMicroOutput = 0 # Flag that allows to supress the output of the micro-problem.
#############################################
# Grid parameters
@@ -323,36 +322,35 @@ parameterSet.microGridLevel = 3
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
-parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
+parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
\ No newline at end of file
diff --git a/experiment/macro-problem/fibreRotation.py b/experiment/macro-problem/fibreRotation.py
new file mode 100644
index 0000000000000000000000000000000000000000..60f06e004e123849586465050221b58c89c4550f
--- /dev/null
+++ b/experiment/macro-problem/fibreRotation.py
@@ -0,0 +1,321 @@
+import math
+import numpy as np
+
+class ParameterSet(dict):
+ def __init__(self, *args, **kwargs):
+ super(ParameterSet, self).__init__(*args, **kwargs)
+ self.__dict__ = self
+
+parameterSet = ParameterSet()
+
+
+""""
+ Experiment: (0,2) x (0,1) domain
+ with Microstructure with infinity distances (squares) from vertices
+ and RVE center but constant in one space direction.
+
+"""
+
+#############################################
+# Paths
+#############################################
+parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_fibreRotation'
+parameterSet.baseName= 'fibreRotation'
+
+#############################################
+# Grid parameters
+#############################################
+nX=8
+nY=4
+# nX=1
+# nY=1
+
+
+
+parameterSet.structuredGrid = 'simplex'
+parameterSet.lower = '0 0'
+parameterSet.upper = '2 1'
+parameterSet.elements = str(nX)+' '+ str(nY)
+
+parameterSet.macroGridLevel = 2
+#############################################
+# Options
+#############################################
+parameterSet.measure_analyticalError = False
+parameterSet.measure_isometryError = False
+parameterSet.vtkWrite_analyticalSurfaceNormal = False
+parameterSet.vtkwrite_analyticalSolution = False
+
+
+parameterSet.conforming_DiscreteJacobian = 0
+#############################################
+# Solver parameters
+#############################################
+# Tolerance of the multigrid solver
+parameterSet.tolerance = 1e-12
+# Maximum number of multigrid iterations
+parameterSet.maxProximalNewtonSteps = 200
+# Initial regularization
+parameterSet.initialRegularization = 200
+# Measure convergence
+parameterSet.instrumented = 0
+
+############################
+# Problem specifications
+############################
+# Dimension of the domain (only used for numerical-test python files)
+parameterSet.dim = 2
+
+#############################################
+# VTK/Output
+#############################################
+# Write discrete solution as .vtk-File
+parameterSet.writeVTK = 1
+parameterSet.vtkwrite_analyticalSolution = 0
+parameterSet.vtkWrite_analyticalSurfaceNormal = 0
+
+# The grid can be refined several times for a higher resolution in the VTK-file.
+parameterSet.subsamplingRefinement = 0
+
+# Write Dof-Vector to .txt-file
+parameterSet.writeDOFvector = 0
+
+#############################################
+# Dirichlet boundary indicator
+#############################################
+# def dirichlet_indicator(x) :
+# if( (x[0] <= 0.01) or (x[0] >= 1.99)):
+# return True
+# else:
+# return False
+
+# one-sided bc
+def dirichlet_indicator(x) :
+ if( (x[0] <= 0.01) ):
+ return True
+ else:
+ return False
+
+# def dirichlet_indicator(x) :
+# return False
+
+
+#############################################
+# MICROSTRUCTURE
+############################################
+parameterSet.VTKwriteMacroPhaseIndicator = True
+parameterSet.MacroPhaseSubsamplingRefinement = 3
+
+
+class GlobalMicrostructure:
+ """ Class that represents the global microstructure.
+
+ The global microstructure can be defined individually
+ for different (finitely many) macroscopic phases.
+ Each macroscopic phase corresponds to a 'LocalMicrostructure_'
+ sub-class that defines the necessary data for the local
+ micro-problem.
+
+ Currently, there are three possibilities for the LocalMicrostructure:
+ (1) Read the effective quantities (Qhom,Beff) from this parset.
+ (Constant local microstructure)
+ (2) Solve the micro-problem once to obtain the effective quantities.
+ (Constant local microstructure)
+ (3) Solve for micro-problem for each macroscopic quadrature point.
+ (Macroscopocally varying local microstructure))
+ """
+ def __init__(self,macroPoint=[0,0]):
+ self.macroPhases = 1
+
+ # define first local microstructure options.
+ # self.macroPhase1_constantMicrostructure = True
+ self.macroPhase1_constantMicrostructure = False
+ self.macroPhase1_readEffectiveQuantities = False;
+
+
+ def macroPhaseIndicator(self,y): #y :macroscopic point
+ """ Indicatorfunction that determines the domains
+ i.e. macro-phases of different local microstructures.
+ """
+ return 1;
+
+ # Represents the local microstructure in Phase 1
+ class LocalMicrostructure_1:
+ def __init__(self,macroPoint=[0,0]): #default value for initialization
+ self.macroPoint = macroPoint
+
+ self.gamma = 1.0 #in the future this might change depending on macroPoint.
+ self.phases = 2 #in the future this might change depending on macroPoint.
+ #--- Define different material phases:
+
+ #- PHASE 1
+ self.phase1_type="isotropic"
+ self.materialParameters_phase1 = [28.7,22.5] # glass (Fibre)
+ #- PHASE 2
+ self.phase2_type="isotropic"
+ self.materialParameters_phase2 = [1.2,2.58] #Matrix-material: polystyrene
+
+
+ # self.cacheMacroPhase=True
+ # self.macroPhases = [] #store macro phase numbers.
+ # self.macroPhaseCount = 0
+
+
+
+
+ # self.theta = 0.2 # only used with constant microstructure.
+ # self.alpha = (np.pi/2.0) - np.pi/3.0
+
+ self.theta_start = 0.1
+ self.theta_target = 0.4
+
+
+ self.alpha_start = (np.pi/2.0) - np.pi/12.0
+ self.alpha_target = (np.pi/2.0) - np.pi/3.0
+
+
+
+ def one_norm(self,v):
+ # r = 0
+ # for i in range(0, len(v)):
+ # r += np.abs(v[i])
+ # return r
+ return np.linalg.norm(v,1)
+
+ def two_norm(self,v):
+ # r = 0
+ # for i in range(0, len(v)):
+ # r += v[i]**2
+ # return np.sqrt(r)
+ return np.linalg.norm(v, 'fro') # frobenius-norm (default)
+
+
+ def infinity_norm(self,v):
+ # return np.abs(v).max()
+ return np.linalg.norm(v,np.inf) # Use already exisiting norm from numpy..
+
+
+ """
+ extract subarray from A with index i removed.
+ """
+ def subArray(self,v,i):
+ r = []
+ for j in range(0,len(v)):
+ if not (j == i):
+ r.append(v[j])
+
+ return np.array(r)
+
+
+
+ #--- Indicator function for material phases
+ def indicatorFunction(self,y):
+ # get local theta value (varies linearly in x1 - direction):
+ macrolength_x = 2.0 #macroscopic length in x1-direction
+ macrolength_y = 1.0 #macroscopic length in x2-direction
+ theta = self.theta_start + (self.macroPoint[0]/macrolength_x) * (self.theta_target-self.theta_start)
+ alpha = self.alpha_start + (self.macroPoint[1]/macrolength_y) * (self.alpha_target-self.alpha_start)
+
+
+ # theta = self.theta
+ # alpah = self.alpha
+
+
+ # cast to numpy array
+ x = np.array(y)
+
+ #Rotated Fibre of width theta
+ if (abs(-np.cos(alpha)*x[0] + np.sin(alpha)*x[1] ) < theta and x[2] >= 0 ):
+ return 1 #Phase1
+ else :
+ return 2 #Phase2
+
+ def prestrain_phase1(self,x):
+ rho = 1.0
+ return [[rho*1.0, 0, 0], [0,rho*1.0,0], [0,0,rho*1.0]]
+
+ def prestrain_phase2(self,x):
+ return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+
+
+
+
+
+
+# def f(x):
+# a = (3.0/16.0)
+# if(x[0] <= 0.01):
+# return [x[0]+a, x[1], 0]
+# elif(x[0] >= 1.99):
+# return [x[0] - a, x[1], 0]
+# else:
+# return [x[0], x[1], 0]
+
+
+def f(x):
+ return [x[0], x[1], 0]
+
+
+def df(x):
+ return ((1,0),
+ (0,1),
+ (0,0))
+
+
+
+fdf = (f, df)
+
+
+#############################################
+# Force
+############################################
+parameterSet.assemble_force_term = False
+
+def force(x):
+ return [0, 0, 0]
+
+
+
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+#############################################
+# Grid parameters
+#############################################
+parameterSet.microGridLevel = 3
+
+#############################################
+# Assembly options
+#############################################
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
+
+#############################################
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
+#############################################
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
+
+#############################################
+# Write/Output options #(default=false)
+#############################################
+# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
+parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
+#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
+parameterSet.MaterialSubsamplingRefinement= 2
+# --- Write Correctos to VTK-File:
+parameterSet.writeCorrectorsVTK = 0
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = False
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/macro-problem/self-folding-box/self-folding-box.py b/experiment/macro-problem/self-folding-box/self-folding-box.py
index 918501f639cc0b3b19c0eb22a13aa42d4305864b..2eba3933d1c69eabb0edf34d3ba1b3cc1ea56336 100644
--- a/experiment/macro-problem/self-folding-box/self-folding-box.py
+++ b/experiment/macro-problem/self-folding-box/self-folding-box.py
@@ -189,7 +189,6 @@ def force(x):
# parameterSet.prestrainFlag = True #deprecated
# parameterSet.macroscopically_varying_microstructure = False
# parameterSet.read_effectiveQuantities_from_Parset = True # Otherwise the Micro/Cell-Problem is solved once to obtain the quantities.
-parameterSet.printMicroOutput = False
#New
# parameterSet.piecewiseConstantMicrostructure = True
@@ -489,6 +488,7 @@ class GlobalMicrostructure:
#
+parameterSet.printMicroOutput = 0 # Flag that allows to supress the output of the micro-problem.
#############################################
# Grid parameters
@@ -498,36 +498,35 @@ parameterSet.microGridLevel = 3
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = 0
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = 0
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0
-#parameterSet.arbitraryElementNumber = 3 #(default = 0
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 0
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
-# Write/Output options #(default = 0
+# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default = 0
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/macro-problem/validation/ParaView-validationGrids.py b/experiment/macro-problem/validation/ParaView-validationGrids.py
new file mode 100644
index 0000000000000000000000000000000000000000..d131548073dbf213372ad0ba3b8c0e3da2b04ec6
--- /dev/null
+++ b/experiment/macro-problem/validation/ParaView-validationGrids.py
@@ -0,0 +1,164 @@
+# trace generated using paraview version 5.11.2
+#import paraview
+#paraview.compatibility.major = 5
+#paraview.compatibility.minor = 11
+
+#### import the simple module from the paraview
+from paraview.simple import *
+#### disable automatic camera reset on 'Show'
+paraview.simple._DisableFirstRenderCameraReset()
+
+
+fileName = ['/home/klaus/Desktop/Dune_TestTest/dune-microstructure/outputs_validation/validation_level3_NC_DuneVTK.vtu']
+# fileName = ['/home/klaus/Desktop/Validation-experiment/outputs_validation/validation_level3_NC_DuneVTK.vtu']
+
+outputPath = '/home/klaus/Desktop/'
+outputName = outputPath + 'RegularGrid.pdf'
+outputName = outputPath + 'SymmetricGrid.pdf'
+
+
+# create a new 'XML Unstructured Grid Reader'
+validation_level3_NC_DuneVTKvtu = XMLUnstructuredGridReader(registrationName='validation_level3_NC_DuneVTK.vtu', FileName=fileName)
+validation_level3_NC_DuneVTKvtu.PointArrayStatus = ['Displacement dune-VTK', 'IsometryErrorFunction', 'SurfaceNormalDiscrete']
+
+# Properties modified on validation_level3_NC_DuneVTKvtu
+validation_level3_NC_DuneVTKvtu.TimeArray = 'None'
+
+# get active view
+renderView1 = GetActiveViewOrCreate('RenderView')
+
+# show data in view
+validation_level3_NC_DuneVTKvtuDisplay = Show(validation_level3_NC_DuneVTKvtu, renderView1, 'UnstructuredGridRepresentation')
+
+# get 2D transfer function for 'IsometryErrorFunction'
+isometryErrorFunctionTF2D = GetTransferFunction2D('IsometryErrorFunction')
+
+# get color transfer function/color map for 'IsometryErrorFunction'
+isometryErrorFunctionLUT = GetColorTransferFunction('IsometryErrorFunction')
+isometryErrorFunctionLUT.TransferFunction2D = isometryErrorFunctionTF2D
+isometryErrorFunctionLUT.RGBPoints = [0.0, 0.231373, 0.298039, 0.752941, 1.5060151815414429, 0.865003, 0.865003, 0.865003, 3.0120303630828857, 0.705882, 0.0156863, 0.14902]
+isometryErrorFunctionLUT.ScalarRangeInitialized = 1.0
+
+# get opacity transfer function/opacity map for 'IsometryErrorFunction'
+isometryErrorFunctionPWF = GetOpacityTransferFunction('IsometryErrorFunction')
+isometryErrorFunctionPWF.Points = [0.0, 0.0, 0.5, 0.0, 3.0120303630828857, 1.0, 0.5, 0.0]
+isometryErrorFunctionPWF.ScalarRangeInitialized = 1
+
+# trace defaults for the display properties.
+validation_level3_NC_DuneVTKvtuDisplay.Representation = 'Surface'
+validation_level3_NC_DuneVTKvtuDisplay.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+validation_level3_NC_DuneVTKvtuDisplay.LookupTable = isometryErrorFunctionLUT
+validation_level3_NC_DuneVTKvtuDisplay.SelectTCoordArray = 'None'
+validation_level3_NC_DuneVTKvtuDisplay.SelectNormalArray = 'None'
+validation_level3_NC_DuneVTKvtuDisplay.SelectTangentArray = 'None'
+validation_level3_NC_DuneVTKvtuDisplay.OSPRayScaleArray = 'IsometryErrorFunction'
+validation_level3_NC_DuneVTKvtuDisplay.OSPRayScaleFunction = 'PiecewiseFunction'
+validation_level3_NC_DuneVTKvtuDisplay.SelectOrientationVectors = 'Displacement dune-VTK'
+validation_level3_NC_DuneVTKvtuDisplay.ScaleFactor = 0.31415901184082035
+validation_level3_NC_DuneVTKvtuDisplay.SelectScaleArray = 'IsometryErrorFunction'
+validation_level3_NC_DuneVTKvtuDisplay.GlyphType = 'Arrow'
+validation_level3_NC_DuneVTKvtuDisplay.GlyphTableIndexArray = 'IsometryErrorFunction'
+validation_level3_NC_DuneVTKvtuDisplay.GaussianRadius = 0.015707950592041015
+validation_level3_NC_DuneVTKvtuDisplay.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+validation_level3_NC_DuneVTKvtuDisplay.ScaleTransferFunction = 'PiecewiseFunction'
+validation_level3_NC_DuneVTKvtuDisplay.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+validation_level3_NC_DuneVTKvtuDisplay.OpacityTransferFunction = 'PiecewiseFunction'
+validation_level3_NC_DuneVTKvtuDisplay.DataAxesGrid = 'GridAxesRepresentation'
+validation_level3_NC_DuneVTKvtuDisplay.PolarAxes = 'PolarAxesRepresentation'
+validation_level3_NC_DuneVTKvtuDisplay.ScalarOpacityFunction = isometryErrorFunctionPWF
+validation_level3_NC_DuneVTKvtuDisplay.ScalarOpacityUnitDistance = 2.221439676435089
+validation_level3_NC_DuneVTKvtuDisplay.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+validation_level3_NC_DuneVTKvtuDisplay.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+validation_level3_NC_DuneVTKvtuDisplay.WriteLog = ''
+
+# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+validation_level3_NC_DuneVTKvtuDisplay.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 3.0120303630828857, 1.0, 0.5, 0.0]
+
+# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+validation_level3_NC_DuneVTKvtuDisplay.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 3.0120303630828857, 1.0, 0.5, 0.0]
+
+# reset view to fit data
+renderView1.ResetCamera(False)
+
+#changing interaction mode based on data extents
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [1.5707950592041016, 1.5707950592041016, 10.52432689666748]
+renderView1.CameraFocalPoint = [1.5707950592041016, 1.5707950592041016, 0.0]
+
+# show color bar/color legend
+validation_level3_NC_DuneVTKvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# turn off scalar coloring
+ColorBy(validation_level3_NC_DuneVTKvtuDisplay, None)
+
+# Hide the scalar bar for this color map if no visible data is colored by it.
+HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+# change solid color
+validation_level3_NC_DuneVTKvtuDisplay.AmbientColor = [0.0, 0.6666666666666666, 1.0]
+validation_level3_NC_DuneVTKvtuDisplay.DiffuseColor = [0.0, 0.6666666666666666, 1.0]
+
+# change representation type
+validation_level3_NC_DuneVTKvtuDisplay.SetRepresentationType('Surface With Edges')
+
+# Properties modified on validation_level3_NC_DuneVTKvtuDisplay
+validation_level3_NC_DuneVTKvtuDisplay.LineWidth = 3.0
+
+# Properties modified on validation_level3_NC_DuneVTKvtuDisplay
+validation_level3_NC_DuneVTKvtuDisplay.LineWidth = 2.0
+
+# Properties modified on validation_level3_NC_DuneVTKvtuDisplay
+validation_level3_NC_DuneVTKvtuDisplay.LineWidth = 1.0
+
+# Properties modified on validation_level3_NC_DuneVTKvtuDisplay
+validation_level3_NC_DuneVTKvtuDisplay.LineWidth = 2.0
+
+# Properties modified on validation_level3_NC_DuneVTKvtuDisplay
+validation_level3_NC_DuneVTKvtuDisplay.Specular = 0.5
+
+# Properties modified on validation_level3_NC_DuneVTKvtuDisplay
+validation_level3_NC_DuneVTKvtuDisplay.Ambient = 0.1
+
+# Properties modified on validation_level3_NC_DuneVTKvtuDisplay
+validation_level3_NC_DuneVTKvtuDisplay.EdgeColor = [0.1411764705882353, 0.12156862745098039, 0.19215686274509805]
+
+# Properties modified on validation_level3_NC_DuneVTKvtuDisplay
+validation_level3_NC_DuneVTKvtuDisplay.NonlinearSubdivisionLevel = 0
+
+# Properties modified on renderView1
+renderView1.OrientationAxesVisibility = 0
+
+# export view
+# ExportView('/home/klaus/Desktop/Dune_TestTest/dune-microstructure/outputs_validation/Grid2.pdf', view=renderView1)
+ExportView(outputName, view=renderView1)
+
+#================================================================
+# addendum: following script captures some of the application
+# state to faithfully reproduce the visualization during playback
+#================================================================
+
+# get layout
+layout1 = GetLayout()
+
+#--------------------------------
+# saving layout sizes for layouts
+
+# layout/tab size in pixels
+layout1.SetSize(2844, 1165)
+
+#-----------------------------------
+# saving camera placements for views
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [1.5707950592041016, 1.5707950592041016, 10.52432689666748]
+renderView1.CameraFocalPoint = [1.5707950592041016, 1.5707950592041016, 0.0]
+renderView1.CameraParallelScale = 2.221439676435089
+
+#--------------------------------------------
+# uncomment the following to render all views
+# RenderAllViews()
+# alternatively, if you want to write images, you can use SaveScreenshot(...).
\ No newline at end of file
diff --git a/experiment/macro-problem/validation/Paraview_GridValidationMinimizer.py b/experiment/macro-problem/validation/Paraview_GridValidationMinimizer.py
new file mode 100644
index 0000000000000000000000000000000000000000..f87bc3b531065397d95e07948de014af3fa38ad3
--- /dev/null
+++ b/experiment/macro-problem/validation/Paraview_GridValidationMinimizer.py
@@ -0,0 +1,1137 @@
+# trace generated using paraview version 5.11.2
+#import paraview
+#paraview.compatibility.major = 5
+#paraview.compatibility.minor = 11
+
+#### import the simple module from the paraview
+from paraview.simple import *
+#### disable automatic camera reset on 'Show'
+paraview.simple._DisableFirstRenderCameraReset()
+
+
+fileName = ['/home/klaus/Desktop/Validation-experiment/REGULAR_FreeMinimizer/LongStrip/validation_level6_NC_DuneVTK.vtu']
+fileName = ['/home/klaus/Desktop/Validation-experiment/SYMMETRIC_FreeMinimizer/LongStrip/validation_level12_NC_DuneVTK.vtu']
+
+outputPath = '/home/klaus/Desktop/'
+outputName = outputPath + 'RegularGridMinimizer.pdf'
+outputName = outputPath + 'SymmetricGridMinimizer.pdf'
+
+
+# create a new 'XML Unstructured Grid Reader'
+validation_level6_NC_DuneVTKvtu = XMLUnstructuredGridReader(registrationName='validation_level6_NC_DuneVTK.vtu', FileName=fileName)
+validation_level6_NC_DuneVTKvtu.CellArrayStatus = []
+validation_level6_NC_DuneVTKvtu.PointArrayStatus = ['Displacement dune-VTK', 'IsometryErrorFunction', 'Displacement_analytical dune-VTK', 'SurfaceNormalDiscrete']
+validation_level6_NC_DuneVTKvtu.TimeArray = 'TimeValue'
+
+# Properties modified on validation_level6_NC_DuneVTKvtu
+validation_level6_NC_DuneVTKvtu.TimeArray = 'None'
+
+# get active view
+renderView1 = GetActiveViewOrCreate('RenderView')
+
+# show data in view
+validation_level6_NC_DuneVTKvtuDisplay = Show(validation_level6_NC_DuneVTKvtu, renderView1, 'UnstructuredGridRepresentation')
+
+# get 2D transfer function for 'IsometryErrorFunction'
+isometryErrorFunctionTF2D = GetTransferFunction2D('IsometryErrorFunction')
+isometryErrorFunctionTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+isometryErrorFunctionTF2D.Boxes = []
+isometryErrorFunctionTF2D.ScalarRangeInitialized = 0
+isometryErrorFunctionTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+isometryErrorFunctionTF2D.OutputDimensions = [10, 10]
+
+# get color transfer function/color map for 'IsometryErrorFunction'
+isometryErrorFunctionLUT = GetColorTransferFunction('IsometryErrorFunction')
+isometryErrorFunctionLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+isometryErrorFunctionLUT.InterpretValuesAsCategories = 0
+isometryErrorFunctionLUT.AnnotationsInitialized = 0
+isometryErrorFunctionLUT.ShowCategoricalColorsinDataRangeOnly = 0
+isometryErrorFunctionLUT.RescaleOnVisibilityChange = 0
+isometryErrorFunctionLUT.EnableOpacityMapping = 0
+isometryErrorFunctionLUT.TransferFunction2D = isometryErrorFunctionTF2D
+isometryErrorFunctionLUT.Use2DTransferFunction = 0
+isometryErrorFunctionLUT.RGBPoints = [0.0, 0.231373, 0.298039, 0.752941, 0.03546995297074318, 0.865003, 0.865003, 0.865003, 0.07093990594148636, 0.705882, 0.0156863, 0.14902]
+isometryErrorFunctionLUT.UseLogScale = 0
+isometryErrorFunctionLUT.UseOpacityControlPointsFreehandDrawing = 0
+isometryErrorFunctionLUT.ShowDataHistogram = 0
+isometryErrorFunctionLUT.AutomaticDataHistogramComputation = 0
+isometryErrorFunctionLUT.DataHistogramNumberOfBins = 10
+isometryErrorFunctionLUT.ColorSpace = 'Diverging'
+isometryErrorFunctionLUT.UseBelowRangeColor = 0
+isometryErrorFunctionLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+isometryErrorFunctionLUT.UseAboveRangeColor = 0
+isometryErrorFunctionLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+isometryErrorFunctionLUT.NanColor = [1.0, 1.0, 0.0]
+isometryErrorFunctionLUT.NanOpacity = 1.0
+isometryErrorFunctionLUT.Discretize = 1
+isometryErrorFunctionLUT.NumberOfTableValues = 256
+isometryErrorFunctionLUT.ScalarRangeInitialized = 1.0
+isometryErrorFunctionLUT.HSVWrap = 0
+isometryErrorFunctionLUT.VectorComponent = 0
+isometryErrorFunctionLUT.VectorMode = 'Magnitude'
+isometryErrorFunctionLUT.AllowDuplicateScalars = 1
+isometryErrorFunctionLUT.Annotations = []
+isometryErrorFunctionLUT.ActiveAnnotatedValues = []
+isometryErrorFunctionLUT.IndexedColors = []
+isometryErrorFunctionLUT.IndexedOpacities = []
+
+# get opacity transfer function/opacity map for 'IsometryErrorFunction'
+isometryErrorFunctionPWF = GetOpacityTransferFunction('IsometryErrorFunction')
+isometryErrorFunctionPWF.Points = [0.0, 0.0, 0.5, 0.0, 0.07093990594148636, 1.0, 0.5, 0.0]
+isometryErrorFunctionPWF.AllowDuplicateScalars = 1
+isometryErrorFunctionPWF.UseLogScale = 0
+isometryErrorFunctionPWF.ScalarRangeInitialized = 1
+
+# trace defaults for the display properties.
+validation_level6_NC_DuneVTKvtuDisplay.Selection = None
+validation_level6_NC_DuneVTKvtuDisplay.Representation = 'Surface'
+validation_level6_NC_DuneVTKvtuDisplay.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+validation_level6_NC_DuneVTKvtuDisplay.LookupTable = isometryErrorFunctionLUT
+validation_level6_NC_DuneVTKvtuDisplay.MapScalars = 1
+validation_level6_NC_DuneVTKvtuDisplay.MultiComponentsMapping = 0
+validation_level6_NC_DuneVTKvtuDisplay.InterpolateScalarsBeforeMapping = 1
+validation_level6_NC_DuneVTKvtuDisplay.Opacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.PointSize = 2.0
+validation_level6_NC_DuneVTKvtuDisplay.LineWidth = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.RenderLinesAsTubes = 0
+validation_level6_NC_DuneVTKvtuDisplay.RenderPointsAsSpheres = 0
+validation_level6_NC_DuneVTKvtuDisplay.Interpolation = 'Gouraud'
+validation_level6_NC_DuneVTKvtuDisplay.Specular = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.SpecularColor = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.SpecularPower = 100.0
+validation_level6_NC_DuneVTKvtuDisplay.Luminosity = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.Ambient = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.Diffuse = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.Roughness = 0.3
+validation_level6_NC_DuneVTKvtuDisplay.Metallic = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.EdgeTint = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.Anisotropy = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.AnisotropyRotation = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.BaseIOR = 1.5
+validation_level6_NC_DuneVTKvtuDisplay.CoatStrength = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.CoatIOR = 2.0
+validation_level6_NC_DuneVTKvtuDisplay.CoatRoughness = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.CoatColor = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.SelectTCoordArray = 'None'
+validation_level6_NC_DuneVTKvtuDisplay.SelectNormalArray = 'None'
+validation_level6_NC_DuneVTKvtuDisplay.SelectTangentArray = 'None'
+validation_level6_NC_DuneVTKvtuDisplay.Texture = None
+validation_level6_NC_DuneVTKvtuDisplay.RepeatTextures = 1
+validation_level6_NC_DuneVTKvtuDisplay.InterpolateTextures = 0
+validation_level6_NC_DuneVTKvtuDisplay.SeamlessU = 0
+validation_level6_NC_DuneVTKvtuDisplay.SeamlessV = 0
+validation_level6_NC_DuneVTKvtuDisplay.UseMipmapTextures = 0
+validation_level6_NC_DuneVTKvtuDisplay.ShowTexturesOnBackface = 1
+validation_level6_NC_DuneVTKvtuDisplay.BaseColorTexture = None
+validation_level6_NC_DuneVTKvtuDisplay.NormalTexture = None
+validation_level6_NC_DuneVTKvtuDisplay.NormalScale = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.CoatNormalTexture = None
+validation_level6_NC_DuneVTKvtuDisplay.CoatNormalScale = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.MaterialTexture = None
+validation_level6_NC_DuneVTKvtuDisplay.OcclusionStrength = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.AnisotropyTexture = None
+validation_level6_NC_DuneVTKvtuDisplay.EmissiveTexture = None
+validation_level6_NC_DuneVTKvtuDisplay.EmissiveFactor = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.FlipTextures = 0
+validation_level6_NC_DuneVTKvtuDisplay.BackfaceRepresentation = 'Follow Frontface'
+validation_level6_NC_DuneVTKvtuDisplay.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.BackfaceOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.Position = [0.0, 0.0, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.Scale = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.Orientation = [0.0, 0.0, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.Origin = [0.0, 0.0, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+validation_level6_NC_DuneVTKvtuDisplay.Pickable = 1
+validation_level6_NC_DuneVTKvtuDisplay.Triangulate = 0
+validation_level6_NC_DuneVTKvtuDisplay.UseShaderReplacements = 0
+validation_level6_NC_DuneVTKvtuDisplay.ShaderReplacements = ''
+validation_level6_NC_DuneVTKvtuDisplay.NonlinearSubdivisionLevel = 1
+validation_level6_NC_DuneVTKvtuDisplay.UseDataPartitions = 0
+validation_level6_NC_DuneVTKvtuDisplay.OSPRayUseScaleArray = 'All Approximate'
+validation_level6_NC_DuneVTKvtuDisplay.OSPRayScaleArray = 'IsometryErrorFunction'
+validation_level6_NC_DuneVTKvtuDisplay.OSPRayScaleFunction = 'PiecewiseFunction'
+validation_level6_NC_DuneVTKvtuDisplay.OSPRayMaterial = 'None'
+validation_level6_NC_DuneVTKvtuDisplay.BlockSelectors = ['/']
+validation_level6_NC_DuneVTKvtuDisplay.BlockColors = []
+validation_level6_NC_DuneVTKvtuDisplay.BlockOpacities = []
+validation_level6_NC_DuneVTKvtuDisplay.Orient = 0
+validation_level6_NC_DuneVTKvtuDisplay.OrientationMode = 'Direction'
+validation_level6_NC_DuneVTKvtuDisplay.SelectOrientationVectors = 'Displacement dune-VTK'
+validation_level6_NC_DuneVTKvtuDisplay.Scaling = 0
+validation_level6_NC_DuneVTKvtuDisplay.ScaleMode = 'No Data Scaling Off'
+validation_level6_NC_DuneVTKvtuDisplay.ScaleFactor = 0.628000020980835
+validation_level6_NC_DuneVTKvtuDisplay.SelectScaleArray = 'IsometryErrorFunction'
+validation_level6_NC_DuneVTKvtuDisplay.GlyphType = 'Arrow'
+validation_level6_NC_DuneVTKvtuDisplay.UseGlyphTable = 0
+validation_level6_NC_DuneVTKvtuDisplay.GlyphTableIndexArray = 'IsometryErrorFunction'
+validation_level6_NC_DuneVTKvtuDisplay.UseCompositeGlyphTable = 0
+validation_level6_NC_DuneVTKvtuDisplay.UseGlyphCullingAndLOD = 0
+validation_level6_NC_DuneVTKvtuDisplay.LODValues = []
+validation_level6_NC_DuneVTKvtuDisplay.ColorByLODIndex = 0
+validation_level6_NC_DuneVTKvtuDisplay.GaussianRadius = 0.03140000104904175
+validation_level6_NC_DuneVTKvtuDisplay.ShaderPreset = 'Sphere'
+validation_level6_NC_DuneVTKvtuDisplay.CustomTriangleScale = 3
+validation_level6_NC_DuneVTKvtuDisplay.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+"""
+validation_level6_NC_DuneVTKvtuDisplay.Emissive = 0
+validation_level6_NC_DuneVTKvtuDisplay.ScaleByArray = 0
+validation_level6_NC_DuneVTKvtuDisplay.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+validation_level6_NC_DuneVTKvtuDisplay.ScaleArrayComponent = ''
+validation_level6_NC_DuneVTKvtuDisplay.UseScaleFunction = 1
+validation_level6_NC_DuneVTKvtuDisplay.ScaleTransferFunction = 'PiecewiseFunction'
+validation_level6_NC_DuneVTKvtuDisplay.OpacityByArray = 0
+validation_level6_NC_DuneVTKvtuDisplay.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+validation_level6_NC_DuneVTKvtuDisplay.OpacityArrayComponent = ''
+validation_level6_NC_DuneVTKvtuDisplay.OpacityTransferFunction = 'PiecewiseFunction'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid = 'GridAxesRepresentation'
+validation_level6_NC_DuneVTKvtuDisplay.SelectionCellLabelBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.SelectionCellLabelFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.SelectionCellLabelFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.SelectionCellLabelFontSize = 18
+validation_level6_NC_DuneVTKvtuDisplay.SelectionCellLabelItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.SelectionCellLabelJustification = 'Left'
+validation_level6_NC_DuneVTKvtuDisplay.SelectionCellLabelOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.SelectionCellLabelShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.SelectionPointLabelBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.SelectionPointLabelFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.SelectionPointLabelFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.SelectionPointLabelFontSize = 18
+validation_level6_NC_DuneVTKvtuDisplay.SelectionPointLabelItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.SelectionPointLabelJustification = 'Left'
+validation_level6_NC_DuneVTKvtuDisplay.SelectionPointLabelOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.SelectionPointLabelShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes = 'PolarAxesRepresentation'
+validation_level6_NC_DuneVTKvtuDisplay.ScalarOpacityFunction = isometryErrorFunctionPWF
+validation_level6_NC_DuneVTKvtuDisplay.ScalarOpacityUnitDistance = 0.5529451794983521
+validation_level6_NC_DuneVTKvtuDisplay.UseSeparateOpacityArray = 0
+validation_level6_NC_DuneVTKvtuDisplay.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+validation_level6_NC_DuneVTKvtuDisplay.OpacityComponent = ''
+validation_level6_NC_DuneVTKvtuDisplay.SelectMapper = 'Projected tetra'
+validation_level6_NC_DuneVTKvtuDisplay.SamplingDimensions = [128, 128, 128]
+validation_level6_NC_DuneVTKvtuDisplay.UseFloatingPointFrameBuffer = 1
+validation_level6_NC_DuneVTKvtuDisplay.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+validation_level6_NC_DuneVTKvtuDisplay.NumberOfSteps = 40
+validation_level6_NC_DuneVTKvtuDisplay.StepSize = 0.25
+validation_level6_NC_DuneVTKvtuDisplay.NormalizeVectors = 1
+validation_level6_NC_DuneVTKvtuDisplay.EnhancedLIC = 1
+validation_level6_NC_DuneVTKvtuDisplay.ColorMode = 'Blend'
+validation_level6_NC_DuneVTKvtuDisplay.LICIntensity = 0.8
+validation_level6_NC_DuneVTKvtuDisplay.MapModeBias = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.EnhanceContrast = 'Off'
+validation_level6_NC_DuneVTKvtuDisplay.LowLICContrastEnhancementFactor = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.HighLICContrastEnhancementFactor = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.LowColorContrastEnhancementFactor = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.HighColorContrastEnhancementFactor = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.AntiAlias = 0
+validation_level6_NC_DuneVTKvtuDisplay.MaskOnSurface = 1
+validation_level6_NC_DuneVTKvtuDisplay.MaskThreshold = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.MaskIntensity = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.MaskColor = [0.5, 0.5, 0.5]
+validation_level6_NC_DuneVTKvtuDisplay.GenerateNoiseTexture = 0
+validation_level6_NC_DuneVTKvtuDisplay.NoiseType = 'Gaussian'
+validation_level6_NC_DuneVTKvtuDisplay.NoiseTextureSize = 128
+validation_level6_NC_DuneVTKvtuDisplay.NoiseGrainSize = 2
+validation_level6_NC_DuneVTKvtuDisplay.MinNoiseValue = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.MaxNoiseValue = 0.8
+validation_level6_NC_DuneVTKvtuDisplay.NumberOfNoiseLevels = 1024
+validation_level6_NC_DuneVTKvtuDisplay.ImpulseNoiseProbability = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.ImpulseNoiseBackgroundValue = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.NoiseGeneratorSeed = 1
+validation_level6_NC_DuneVTKvtuDisplay.CompositeStrategy = 'AUTO'
+validation_level6_NC_DuneVTKvtuDisplay.UseLICForLOD = 0
+validation_level6_NC_DuneVTKvtuDisplay.WriteLog = ''
+
+# init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+validation_level6_NC_DuneVTKvtuDisplay.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.OSPRayScaleFunction.UseLogScale = 0
+
+# init the 'Arrow' selected for 'GlyphType'
+validation_level6_NC_DuneVTKvtuDisplay.GlyphType.TipResolution = 6
+validation_level6_NC_DuneVTKvtuDisplay.GlyphType.TipRadius = 0.1
+validation_level6_NC_DuneVTKvtuDisplay.GlyphType.TipLength = 0.35
+validation_level6_NC_DuneVTKvtuDisplay.GlyphType.ShaftResolution = 6
+validation_level6_NC_DuneVTKvtuDisplay.GlyphType.ShaftRadius = 0.03
+validation_level6_NC_DuneVTKvtuDisplay.GlyphType.Invert = 0
+
+# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+validation_level6_NC_DuneVTKvtuDisplay.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.07093990594148636, 1.0, 0.5, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.ScaleTransferFunction.UseLogScale = 0
+
+# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+validation_level6_NC_DuneVTKvtuDisplay.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.07093990594148636, 1.0, 0.5, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.OpacityTransferFunction.UseLogScale = 0
+
+# init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XTitle = 'X Axis'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YTitle = 'Y Axis'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZTitle = 'Z Axis'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XTitleFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XTitleFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XTitleBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XTitleItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XTitleFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XTitleShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XTitleOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YTitleFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YTitleFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YTitleBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YTitleItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YTitleFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YTitleShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YTitleOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZTitleFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZTitleFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZTitleBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZTitleItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZTitleFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZTitleShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZTitleOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.FacesToRender = 63
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.CullBackface = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.CullFrontface = 1
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ShowGrid = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ShowEdges = 1
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ShowTicks = 1
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.LabelUniqueEdgesOnly = 1
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.AxesToLabel = 63
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XLabelFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XLabelFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XLabelBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XLabelItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XLabelFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XLabelShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XLabelOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YLabelFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YLabelFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YLabelBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YLabelItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YLabelFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YLabelShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YLabelOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZLabelFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZLabelFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZLabelBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZLabelItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZLabelFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZLabelShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZLabelOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XAxisNotation = 'Mixed'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XAxisPrecision = 2
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XAxisUseCustomLabels = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.XAxisLabels = []
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YAxisNotation = 'Mixed'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YAxisPrecision = 2
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YAxisUseCustomLabels = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.YAxisLabels = []
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZAxisNotation = 'Mixed'
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZAxisPrecision = 2
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZAxisUseCustomLabels = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.ZAxisLabels = []
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.UseCustomBounds = 0
+validation_level6_NC_DuneVTKvtuDisplay.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+# init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.Visibility = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.Translation = [0.0, 0.0, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.Scale = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.EnableCustomBounds = [0, 0, 0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.EnableCustomRange = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.CustomRange = [0.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.RadialAxesVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.DrawRadialGridlines = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarArcsVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.DrawPolarArcsGridlines = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.NumberOfRadialAxes = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.AutoSubdividePolarAxis = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.NumberOfPolarAxis = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.MinimumRadius = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.MinimumAngle = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.MaximumAngle = 90.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.RadialAxesOriginToPolarAxis = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.Ratio = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitleVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitle = 'Radial Distance'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarLabelVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarLabelFormat = '%-#6.3g'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarLabelExponentLocation = 'Labels'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.RadialLabelVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.RadialLabelFormat = '%-#3.1f'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.RadialLabelLocation = 'Bottom'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.RadialUnitsVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.ScreenSize = 10.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitleOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitleFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitleBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitleItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitleShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTitleFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisLabelOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisLabelFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisLabelBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisLabelItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisLabelShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisLabelFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisTextOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisTextFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisTextBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisTextItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisTextShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisTextFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SecondaryRadialAxesTextBold = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SecondaryRadialAxesTextItalic = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SecondaryRadialAxesTextShadow = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.EnableDistanceLOD = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.DistanceLODThreshold = 0.7
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.EnableViewAngleLOD = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.ViewAngleLODThreshold = 0.7
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.SmallestVisiblePolarAngle = 0.5
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarTicksVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.ArcTicksOriginToPolarAxis = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.TickLocation = 'Both'
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.AxisTickVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.AxisMinorTickVisibility = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.ArcTickVisibility = 1
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.ArcMinorTickVisibility = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.DeltaAngleMajor = 10.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.DeltaAngleMinor = 5.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisMajorTickSize = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTickRatioSize = 0.3
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisMajorTickThickness = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.PolarAxisTickRatioThickness = 0.5
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.ArcMajorTickSize = 0.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.ArcTickRatioSize = 0.3
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.ArcMajorTickThickness = 1.0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.ArcTickRatioThickness = 0.5
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.Use2DMode = 0
+validation_level6_NC_DuneVTKvtuDisplay.PolarAxes.UseLogAxis = 0
+
+# reset view to fit data
+renderView1.ResetCamera(False)
+
+#changing interaction mode based on data extents
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [3.140000104904175, 1.5707963705062866, 21.03800070285797]
+renderView1.CameraFocalPoint = [3.140000104904175, 1.5707963705062866, 0.0]
+
+# show color bar/color legend
+validation_level6_NC_DuneVTKvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# create a new 'Warp By Vector'
+warpByVector1 = WarpByVector(registrationName='WarpByVector1', Input=validation_level6_NC_DuneVTKvtu)
+warpByVector1.Vectors = ['POINTS', 'Displacement dune-VTK']
+warpByVector1.ScaleFactor = 1.0
+
+# show data in view
+warpByVector1Display = Show(warpByVector1, renderView1, 'UnstructuredGridRepresentation')
+
+# trace defaults for the display properties.
+warpByVector1Display.Selection = None
+warpByVector1Display.Representation = 'Surface'
+warpByVector1Display.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+warpByVector1Display.LookupTable = isometryErrorFunctionLUT
+warpByVector1Display.MapScalars = 1
+warpByVector1Display.MultiComponentsMapping = 0
+warpByVector1Display.InterpolateScalarsBeforeMapping = 1
+warpByVector1Display.Opacity = 1.0
+warpByVector1Display.PointSize = 2.0
+warpByVector1Display.LineWidth = 1.0
+warpByVector1Display.RenderLinesAsTubes = 0
+warpByVector1Display.RenderPointsAsSpheres = 0
+warpByVector1Display.Interpolation = 'Gouraud'
+warpByVector1Display.Specular = 0.0
+warpByVector1Display.SpecularColor = [1.0, 1.0, 1.0]
+warpByVector1Display.SpecularPower = 100.0
+warpByVector1Display.Luminosity = 0.0
+warpByVector1Display.Ambient = 0.0
+warpByVector1Display.Diffuse = 1.0
+warpByVector1Display.Roughness = 0.3
+warpByVector1Display.Metallic = 0.0
+warpByVector1Display.EdgeTint = [1.0, 1.0, 1.0]
+warpByVector1Display.Anisotropy = 0.0
+warpByVector1Display.AnisotropyRotation = 0.0
+warpByVector1Display.BaseIOR = 1.5
+warpByVector1Display.CoatStrength = 0.0
+warpByVector1Display.CoatIOR = 2.0
+warpByVector1Display.CoatRoughness = 0.0
+warpByVector1Display.CoatColor = [1.0, 1.0, 1.0]
+warpByVector1Display.SelectTCoordArray = 'None'
+warpByVector1Display.SelectNormalArray = 'None'
+warpByVector1Display.SelectTangentArray = 'None'
+warpByVector1Display.Texture = None
+warpByVector1Display.RepeatTextures = 1
+warpByVector1Display.InterpolateTextures = 0
+warpByVector1Display.SeamlessU = 0
+warpByVector1Display.SeamlessV = 0
+warpByVector1Display.UseMipmapTextures = 0
+warpByVector1Display.ShowTexturesOnBackface = 1
+warpByVector1Display.BaseColorTexture = None
+warpByVector1Display.NormalTexture = None
+warpByVector1Display.NormalScale = 1.0
+warpByVector1Display.CoatNormalTexture = None
+warpByVector1Display.CoatNormalScale = 1.0
+warpByVector1Display.MaterialTexture = None
+warpByVector1Display.OcclusionStrength = 1.0
+warpByVector1Display.AnisotropyTexture = None
+warpByVector1Display.EmissiveTexture = None
+warpByVector1Display.EmissiveFactor = [1.0, 1.0, 1.0]
+warpByVector1Display.FlipTextures = 0
+warpByVector1Display.BackfaceRepresentation = 'Follow Frontface'
+warpByVector1Display.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+warpByVector1Display.BackfaceOpacity = 1.0
+warpByVector1Display.Position = [0.0, 0.0, 0.0]
+warpByVector1Display.Scale = [1.0, 1.0, 1.0]
+warpByVector1Display.Orientation = [0.0, 0.0, 0.0]
+warpByVector1Display.Origin = [0.0, 0.0, 0.0]
+warpByVector1Display.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+warpByVector1Display.Pickable = 1
+warpByVector1Display.Triangulate = 0
+warpByVector1Display.UseShaderReplacements = 0
+warpByVector1Display.ShaderReplacements = ''
+warpByVector1Display.NonlinearSubdivisionLevel = 1
+warpByVector1Display.UseDataPartitions = 0
+warpByVector1Display.OSPRayUseScaleArray = 'All Approximate'
+warpByVector1Display.OSPRayScaleArray = 'IsometryErrorFunction'
+warpByVector1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+warpByVector1Display.OSPRayMaterial = 'None'
+warpByVector1Display.BlockSelectors = ['/']
+warpByVector1Display.BlockColors = []
+warpByVector1Display.BlockOpacities = []
+warpByVector1Display.Orient = 0
+warpByVector1Display.OrientationMode = 'Direction'
+warpByVector1Display.SelectOrientationVectors = 'Displacement dune-VTK'
+warpByVector1Display.Scaling = 0
+warpByVector1Display.ScaleMode = 'No Data Scaling Off'
+warpByVector1Display.ScaleFactor = 0.4831523358821869
+warpByVector1Display.SelectScaleArray = 'IsometryErrorFunction'
+warpByVector1Display.GlyphType = 'Arrow'
+warpByVector1Display.UseGlyphTable = 0
+warpByVector1Display.GlyphTableIndexArray = 'IsometryErrorFunction'
+warpByVector1Display.UseCompositeGlyphTable = 0
+warpByVector1Display.UseGlyphCullingAndLOD = 0
+warpByVector1Display.LODValues = []
+warpByVector1Display.ColorByLODIndex = 0
+warpByVector1Display.GaussianRadius = 0.024157616794109344
+warpByVector1Display.ShaderPreset = 'Sphere'
+warpByVector1Display.CustomTriangleScale = 3
+warpByVector1Display.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+"""
+warpByVector1Display.Emissive = 0
+warpByVector1Display.ScaleByArray = 0
+warpByVector1Display.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+warpByVector1Display.ScaleArrayComponent = ''
+warpByVector1Display.UseScaleFunction = 1
+warpByVector1Display.ScaleTransferFunction = 'PiecewiseFunction'
+warpByVector1Display.OpacityByArray = 0
+warpByVector1Display.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+warpByVector1Display.OpacityArrayComponent = ''
+warpByVector1Display.OpacityTransferFunction = 'PiecewiseFunction'
+warpByVector1Display.DataAxesGrid = 'GridAxesRepresentation'
+warpByVector1Display.SelectionCellLabelBold = 0
+warpByVector1Display.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+warpByVector1Display.SelectionCellLabelFontFamily = 'Arial'
+warpByVector1Display.SelectionCellLabelFontFile = ''
+warpByVector1Display.SelectionCellLabelFontSize = 18
+warpByVector1Display.SelectionCellLabelItalic = 0
+warpByVector1Display.SelectionCellLabelJustification = 'Left'
+warpByVector1Display.SelectionCellLabelOpacity = 1.0
+warpByVector1Display.SelectionCellLabelShadow = 0
+warpByVector1Display.SelectionPointLabelBold = 0
+warpByVector1Display.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+warpByVector1Display.SelectionPointLabelFontFamily = 'Arial'
+warpByVector1Display.SelectionPointLabelFontFile = ''
+warpByVector1Display.SelectionPointLabelFontSize = 18
+warpByVector1Display.SelectionPointLabelItalic = 0
+warpByVector1Display.SelectionPointLabelJustification = 'Left'
+warpByVector1Display.SelectionPointLabelOpacity = 1.0
+warpByVector1Display.SelectionPointLabelShadow = 0
+warpByVector1Display.PolarAxes = 'PolarAxesRepresentation'
+warpByVector1Display.ScalarOpacityFunction = isometryErrorFunctionPWF
+warpByVector1Display.ScalarOpacityUnitDistance = 0.4798796485453529
+warpByVector1Display.UseSeparateOpacityArray = 0
+warpByVector1Display.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+warpByVector1Display.OpacityComponent = ''
+warpByVector1Display.SelectMapper = 'Projected tetra'
+warpByVector1Display.SamplingDimensions = [128, 128, 128]
+warpByVector1Display.UseFloatingPointFrameBuffer = 1
+warpByVector1Display.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+warpByVector1Display.NumberOfSteps = 40
+warpByVector1Display.StepSize = 0.25
+warpByVector1Display.NormalizeVectors = 1
+warpByVector1Display.EnhancedLIC = 1
+warpByVector1Display.ColorMode = 'Blend'
+warpByVector1Display.LICIntensity = 0.8
+warpByVector1Display.MapModeBias = 0.0
+warpByVector1Display.EnhanceContrast = 'Off'
+warpByVector1Display.LowLICContrastEnhancementFactor = 0.0
+warpByVector1Display.HighLICContrastEnhancementFactor = 0.0
+warpByVector1Display.LowColorContrastEnhancementFactor = 0.0
+warpByVector1Display.HighColorContrastEnhancementFactor = 0.0
+warpByVector1Display.AntiAlias = 0
+warpByVector1Display.MaskOnSurface = 1
+warpByVector1Display.MaskThreshold = 0.0
+warpByVector1Display.MaskIntensity = 0.0
+warpByVector1Display.MaskColor = [0.5, 0.5, 0.5]
+warpByVector1Display.GenerateNoiseTexture = 0
+warpByVector1Display.NoiseType = 'Gaussian'
+warpByVector1Display.NoiseTextureSize = 128
+warpByVector1Display.NoiseGrainSize = 2
+warpByVector1Display.MinNoiseValue = 0.0
+warpByVector1Display.MaxNoiseValue = 0.8
+warpByVector1Display.NumberOfNoiseLevels = 1024
+warpByVector1Display.ImpulseNoiseProbability = 1.0
+warpByVector1Display.ImpulseNoiseBackgroundValue = 0.0
+warpByVector1Display.NoiseGeneratorSeed = 1
+warpByVector1Display.CompositeStrategy = 'AUTO'
+warpByVector1Display.UseLICForLOD = 0
+warpByVector1Display.WriteLog = ''
+
+# init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+warpByVector1Display.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+warpByVector1Display.OSPRayScaleFunction.UseLogScale = 0
+
+# init the 'Arrow' selected for 'GlyphType'
+warpByVector1Display.GlyphType.TipResolution = 6
+warpByVector1Display.GlyphType.TipRadius = 0.1
+warpByVector1Display.GlyphType.TipLength = 0.35
+warpByVector1Display.GlyphType.ShaftResolution = 6
+warpByVector1Display.GlyphType.ShaftRadius = 0.03
+warpByVector1Display.GlyphType.Invert = 0
+
+# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+warpByVector1Display.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.07093990594148636, 1.0, 0.5, 0.0]
+warpByVector1Display.ScaleTransferFunction.UseLogScale = 0
+
+# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+warpByVector1Display.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.07093990594148636, 1.0, 0.5, 0.0]
+warpByVector1Display.OpacityTransferFunction.UseLogScale = 0
+
+# init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+warpByVector1Display.DataAxesGrid.XTitle = 'X Axis'
+warpByVector1Display.DataAxesGrid.YTitle = 'Y Axis'
+warpByVector1Display.DataAxesGrid.ZTitle = 'Z Axis'
+warpByVector1Display.DataAxesGrid.XTitleFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.XTitleFontFile = ''
+warpByVector1Display.DataAxesGrid.XTitleBold = 0
+warpByVector1Display.DataAxesGrid.XTitleItalic = 0
+warpByVector1Display.DataAxesGrid.XTitleFontSize = 12
+warpByVector1Display.DataAxesGrid.XTitleShadow = 0
+warpByVector1Display.DataAxesGrid.XTitleOpacity = 1.0
+warpByVector1Display.DataAxesGrid.YTitleFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.YTitleFontFile = ''
+warpByVector1Display.DataAxesGrid.YTitleBold = 0
+warpByVector1Display.DataAxesGrid.YTitleItalic = 0
+warpByVector1Display.DataAxesGrid.YTitleFontSize = 12
+warpByVector1Display.DataAxesGrid.YTitleShadow = 0
+warpByVector1Display.DataAxesGrid.YTitleOpacity = 1.0
+warpByVector1Display.DataAxesGrid.ZTitleFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.ZTitleFontFile = ''
+warpByVector1Display.DataAxesGrid.ZTitleBold = 0
+warpByVector1Display.DataAxesGrid.ZTitleItalic = 0
+warpByVector1Display.DataAxesGrid.ZTitleFontSize = 12
+warpByVector1Display.DataAxesGrid.ZTitleShadow = 0
+warpByVector1Display.DataAxesGrid.ZTitleOpacity = 1.0
+warpByVector1Display.DataAxesGrid.FacesToRender = 63
+warpByVector1Display.DataAxesGrid.CullBackface = 0
+warpByVector1Display.DataAxesGrid.CullFrontface = 1
+warpByVector1Display.DataAxesGrid.ShowGrid = 0
+warpByVector1Display.DataAxesGrid.ShowEdges = 1
+warpByVector1Display.DataAxesGrid.ShowTicks = 1
+warpByVector1Display.DataAxesGrid.LabelUniqueEdgesOnly = 1
+warpByVector1Display.DataAxesGrid.AxesToLabel = 63
+warpByVector1Display.DataAxesGrid.XLabelFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.XLabelFontFile = ''
+warpByVector1Display.DataAxesGrid.XLabelBold = 0
+warpByVector1Display.DataAxesGrid.XLabelItalic = 0
+warpByVector1Display.DataAxesGrid.XLabelFontSize = 12
+warpByVector1Display.DataAxesGrid.XLabelShadow = 0
+warpByVector1Display.DataAxesGrid.XLabelOpacity = 1.0
+warpByVector1Display.DataAxesGrid.YLabelFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.YLabelFontFile = ''
+warpByVector1Display.DataAxesGrid.YLabelBold = 0
+warpByVector1Display.DataAxesGrid.YLabelItalic = 0
+warpByVector1Display.DataAxesGrid.YLabelFontSize = 12
+warpByVector1Display.DataAxesGrid.YLabelShadow = 0
+warpByVector1Display.DataAxesGrid.YLabelOpacity = 1.0
+warpByVector1Display.DataAxesGrid.ZLabelFontFamily = 'Arial'
+warpByVector1Display.DataAxesGrid.ZLabelFontFile = ''
+warpByVector1Display.DataAxesGrid.ZLabelBold = 0
+warpByVector1Display.DataAxesGrid.ZLabelItalic = 0
+warpByVector1Display.DataAxesGrid.ZLabelFontSize = 12
+warpByVector1Display.DataAxesGrid.ZLabelShadow = 0
+warpByVector1Display.DataAxesGrid.ZLabelOpacity = 1.0
+warpByVector1Display.DataAxesGrid.XAxisNotation = 'Mixed'
+warpByVector1Display.DataAxesGrid.XAxisPrecision = 2
+warpByVector1Display.DataAxesGrid.XAxisUseCustomLabels = 0
+warpByVector1Display.DataAxesGrid.XAxisLabels = []
+warpByVector1Display.DataAxesGrid.YAxisNotation = 'Mixed'
+warpByVector1Display.DataAxesGrid.YAxisPrecision = 2
+warpByVector1Display.DataAxesGrid.YAxisUseCustomLabels = 0
+warpByVector1Display.DataAxesGrid.YAxisLabels = []
+warpByVector1Display.DataAxesGrid.ZAxisNotation = 'Mixed'
+warpByVector1Display.DataAxesGrid.ZAxisPrecision = 2
+warpByVector1Display.DataAxesGrid.ZAxisUseCustomLabels = 0
+warpByVector1Display.DataAxesGrid.ZAxisLabels = []
+warpByVector1Display.DataAxesGrid.UseCustomBounds = 0
+warpByVector1Display.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+# init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+warpByVector1Display.PolarAxes.Visibility = 0
+warpByVector1Display.PolarAxes.Translation = [0.0, 0.0, 0.0]
+warpByVector1Display.PolarAxes.Scale = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+warpByVector1Display.PolarAxes.EnableCustomBounds = [0, 0, 0]
+warpByVector1Display.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+warpByVector1Display.PolarAxes.EnableCustomRange = 0
+warpByVector1Display.PolarAxes.CustomRange = [0.0, 1.0]
+warpByVector1Display.PolarAxes.PolarAxisVisibility = 1
+warpByVector1Display.PolarAxes.RadialAxesVisibility = 1
+warpByVector1Display.PolarAxes.DrawRadialGridlines = 1
+warpByVector1Display.PolarAxes.PolarArcsVisibility = 1
+warpByVector1Display.PolarAxes.DrawPolarArcsGridlines = 1
+warpByVector1Display.PolarAxes.NumberOfRadialAxes = 0
+warpByVector1Display.PolarAxes.AutoSubdividePolarAxis = 1
+warpByVector1Display.PolarAxes.NumberOfPolarAxis = 0
+warpByVector1Display.PolarAxes.MinimumRadius = 0.0
+warpByVector1Display.PolarAxes.MinimumAngle = 0.0
+warpByVector1Display.PolarAxes.MaximumAngle = 90.0
+warpByVector1Display.PolarAxes.RadialAxesOriginToPolarAxis = 1
+warpByVector1Display.PolarAxes.Ratio = 1.0
+warpByVector1Display.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+warpByVector1Display.PolarAxes.PolarAxisTitleVisibility = 1
+warpByVector1Display.PolarAxes.PolarAxisTitle = 'Radial Distance'
+warpByVector1Display.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+warpByVector1Display.PolarAxes.PolarLabelVisibility = 1
+warpByVector1Display.PolarAxes.PolarLabelFormat = '%-#6.3g'
+warpByVector1Display.PolarAxes.PolarLabelExponentLocation = 'Labels'
+warpByVector1Display.PolarAxes.RadialLabelVisibility = 1
+warpByVector1Display.PolarAxes.RadialLabelFormat = '%-#3.1f'
+warpByVector1Display.PolarAxes.RadialLabelLocation = 'Bottom'
+warpByVector1Display.PolarAxes.RadialUnitsVisibility = 1
+warpByVector1Display.PolarAxes.ScreenSize = 10.0
+warpByVector1Display.PolarAxes.PolarAxisTitleOpacity = 1.0
+warpByVector1Display.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+warpByVector1Display.PolarAxes.PolarAxisTitleFontFile = ''
+warpByVector1Display.PolarAxes.PolarAxisTitleBold = 0
+warpByVector1Display.PolarAxes.PolarAxisTitleItalic = 0
+warpByVector1Display.PolarAxes.PolarAxisTitleShadow = 0
+warpByVector1Display.PolarAxes.PolarAxisTitleFontSize = 12
+warpByVector1Display.PolarAxes.PolarAxisLabelOpacity = 1.0
+warpByVector1Display.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+warpByVector1Display.PolarAxes.PolarAxisLabelFontFile = ''
+warpByVector1Display.PolarAxes.PolarAxisLabelBold = 0
+warpByVector1Display.PolarAxes.PolarAxisLabelItalic = 0
+warpByVector1Display.PolarAxes.PolarAxisLabelShadow = 0
+warpByVector1Display.PolarAxes.PolarAxisLabelFontSize = 12
+warpByVector1Display.PolarAxes.LastRadialAxisTextOpacity = 1.0
+warpByVector1Display.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+warpByVector1Display.PolarAxes.LastRadialAxisTextFontFile = ''
+warpByVector1Display.PolarAxes.LastRadialAxisTextBold = 0
+warpByVector1Display.PolarAxes.LastRadialAxisTextItalic = 0
+warpByVector1Display.PolarAxes.LastRadialAxisTextShadow = 0
+warpByVector1Display.PolarAxes.LastRadialAxisTextFontSize = 12
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextBold = 0
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextItalic = 0
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextShadow = 0
+warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+warpByVector1Display.PolarAxes.EnableDistanceLOD = 1
+warpByVector1Display.PolarAxes.DistanceLODThreshold = 0.7
+warpByVector1Display.PolarAxes.EnableViewAngleLOD = 1
+warpByVector1Display.PolarAxes.ViewAngleLODThreshold = 0.7
+warpByVector1Display.PolarAxes.SmallestVisiblePolarAngle = 0.5
+warpByVector1Display.PolarAxes.PolarTicksVisibility = 1
+warpByVector1Display.PolarAxes.ArcTicksOriginToPolarAxis = 1
+warpByVector1Display.PolarAxes.TickLocation = 'Both'
+warpByVector1Display.PolarAxes.AxisTickVisibility = 1
+warpByVector1Display.PolarAxes.AxisMinorTickVisibility = 0
+warpByVector1Display.PolarAxes.ArcTickVisibility = 1
+warpByVector1Display.PolarAxes.ArcMinorTickVisibility = 0
+warpByVector1Display.PolarAxes.DeltaAngleMajor = 10.0
+warpByVector1Display.PolarAxes.DeltaAngleMinor = 5.0
+warpByVector1Display.PolarAxes.PolarAxisMajorTickSize = 0.0
+warpByVector1Display.PolarAxes.PolarAxisTickRatioSize = 0.3
+warpByVector1Display.PolarAxes.PolarAxisMajorTickThickness = 1.0
+warpByVector1Display.PolarAxes.PolarAxisTickRatioThickness = 0.5
+warpByVector1Display.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+warpByVector1Display.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+warpByVector1Display.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+warpByVector1Display.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+warpByVector1Display.PolarAxes.ArcMajorTickSize = 0.0
+warpByVector1Display.PolarAxes.ArcTickRatioSize = 0.3
+warpByVector1Display.PolarAxes.ArcMajorTickThickness = 1.0
+warpByVector1Display.PolarAxes.ArcTickRatioThickness = 0.5
+warpByVector1Display.PolarAxes.Use2DMode = 0
+warpByVector1Display.PolarAxes.UseLogAxis = 0
+
+# hide data in view
+Hide(validation_level6_NC_DuneVTKvtu, renderView1)
+
+# show color bar/color legend
+warpByVector1Display.SetScalarBarVisibility(renderView1, True)
+
+# update the view to ensure updated data information
+renderView1.Update()
+
+# set scalar coloring
+ColorBy(warpByVector1Display, ('POINTS', 'Displacement dune-VTK', 'Magnitude'))
+
+# Hide the scalar bar for this color map if no visible data is colored by it.
+HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+# rescale color and/or opacity maps used to include current data range
+warpByVector1Display.RescaleTransferFunctionToDataRange(True, False)
+
+# show color bar/color legend
+warpByVector1Display.SetScalarBarVisibility(renderView1, True)
+
+# get 2D transfer function for 'DisplacementduneVTK'
+displacementduneVTKTF2D = GetTransferFunction2D('DisplacementduneVTK')
+displacementduneVTKTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+displacementduneVTKTF2D.Boxes = []
+displacementduneVTKTF2D.ScalarRangeInitialized = 0
+displacementduneVTKTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+displacementduneVTKTF2D.OutputDimensions = [10, 10]
+
+# get color transfer function/color map for 'DisplacementduneVTK'
+displacementduneVTKLUT = GetColorTransferFunction('DisplacementduneVTK')
+displacementduneVTKLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+displacementduneVTKLUT.InterpretValuesAsCategories = 0
+displacementduneVTKLUT.AnnotationsInitialized = 0
+displacementduneVTKLUT.ShowCategoricalColorsinDataRangeOnly = 0
+displacementduneVTKLUT.RescaleOnVisibilityChange = 0
+displacementduneVTKLUT.EnableOpacityMapping = 0
+displacementduneVTKLUT.TransferFunction2D = displacementduneVTKTF2D
+displacementduneVTKLUT.Use2DTransferFunction = 0
+displacementduneVTKLUT.RGBPoints = [0.13888426365894344, 0.231373, 0.298039, 0.752941, 0.820044164029222, 0.865003, 0.865003, 0.865003, 1.5012040643995004, 0.705882, 0.0156863, 0.14902]
+displacementduneVTKLUT.UseLogScale = 0
+displacementduneVTKLUT.UseOpacityControlPointsFreehandDrawing = 0
+displacementduneVTKLUT.ShowDataHistogram = 0
+displacementduneVTKLUT.AutomaticDataHistogramComputation = 0
+displacementduneVTKLUT.DataHistogramNumberOfBins = 10
+displacementduneVTKLUT.ColorSpace = 'Diverging'
+displacementduneVTKLUT.UseBelowRangeColor = 0
+displacementduneVTKLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+displacementduneVTKLUT.UseAboveRangeColor = 0
+displacementduneVTKLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+displacementduneVTKLUT.NanColor = [1.0, 1.0, 0.0]
+displacementduneVTKLUT.NanOpacity = 1.0
+displacementduneVTKLUT.Discretize = 1
+displacementduneVTKLUT.NumberOfTableValues = 256
+displacementduneVTKLUT.ScalarRangeInitialized = 1.0
+displacementduneVTKLUT.HSVWrap = 0
+displacementduneVTKLUT.VectorComponent = 0
+displacementduneVTKLUT.VectorMode = 'Magnitude'
+displacementduneVTKLUT.AllowDuplicateScalars = 1
+displacementduneVTKLUT.Annotations = []
+displacementduneVTKLUT.ActiveAnnotatedValues = []
+displacementduneVTKLUT.IndexedColors = []
+displacementduneVTKLUT.IndexedOpacities = []
+
+# get opacity transfer function/opacity map for 'DisplacementduneVTK'
+displacementduneVTKPWF = GetOpacityTransferFunction('DisplacementduneVTK')
+displacementduneVTKPWF.Points = [0.13888426365894344, 0.0, 0.5, 0.0, 1.5012040643995004, 1.0, 0.5, 0.0]
+displacementduneVTKPWF.AllowDuplicateScalars = 1
+displacementduneVTKPWF.UseLogScale = 0
+displacementduneVTKPWF.ScalarRangeInitialized = 1
+
+# convert to log space
+displacementduneVTKLUT.MapControlPointsToLogSpace()
+
+# Properties modified on displacementduneVTKLUT
+displacementduneVTKLUT.UseLogScale = 1
+
+# Apply a preset using its name. Note this may not work as expected when presets have duplicate names.
+displacementduneVTKLUT.ApplyPreset('Viridis (matplotlib)', True)
+
+# hide color bar/color legend
+warpByVector1Display.SetScalarBarVisibility(renderView1, False)
+
+# set active source
+SetActiveSource(validation_level6_NC_DuneVTKvtu)
+
+# set active source
+SetActiveSource(validation_level6_NC_DuneVTKvtu)
+
+# show data in view
+validation_level6_NC_DuneVTKvtuDisplay = Show(validation_level6_NC_DuneVTKvtu, renderView1, 'UnstructuredGridRepresentation')
+
+# show color bar/color legend
+validation_level6_NC_DuneVTKvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+# hide color bar/color legend
+validation_level6_NC_DuneVTKvtuDisplay.SetScalarBarVisibility(renderView1, False)
+
+# turn off scalar coloring
+ColorBy(validation_level6_NC_DuneVTKvtuDisplay, None)
+
+# Hide the scalar bar for this color map if no visible data is colored by it.
+HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+# Properties modified on validation_level6_NC_DuneVTKvtuDisplay
+validation_level6_NC_DuneVTKvtuDisplay.Opacity = 0.2
+
+# set active source
+SetActiveSource(warpByVector1)
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.NonlinearSubdivisionLevel = 4
+
+# Properties modified on renderView1
+renderView1.OrientationAxesInteractivity = 1
+
+# Properties modified on renderView1
+renderView1.OrientationAxesVisibility = 0
+
+# Properties modified on renderView1
+renderView1.OrientationAxesInteractivity = 0
+
+renderView1.ResetActiveCameraToPositiveZ()
+
+# reset view to fit data
+renderView1.ResetCamera(False)
+
+renderView1.ResetActiveCameraToNegativeZ()
+
+# reset view to fit data
+renderView1.ResetCamera(False)
+
+# reset view to fit data
+renderView1.ResetCamera(True)
+
+# reset view to fit data bounds
+renderView1.ResetCamera(0.7242339253425598, 5.5557661056518555, -0.041813626885414124, 3.183406352996826, -1.1687347888946533, 0.6730884313583374, True)
+
+# reset view to fit data
+renderView1.ResetCamera(True)
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Specular = 0.3
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Ambient = 0.2
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Ambient = 0.5
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Ambient = 0.3
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Specular = 0.5
+
+# Properties modified on warpByVector1Display
+warpByVector1Display.Specular = 0.2
+
+# export view
+# ExportView('/home/klaus/Desktop/RegularGridMinimizer.pdf', view=renderView1, Plottitle='ParaView GL2PS Export',
+# Compressoutputfile=0,
+# Drawbackground=1,
+# Cullhiddenprimitives=1,
+# Linewidthscalingfactor=0.714,
+# Pointsizescalingfactor=0.714,
+# GL2PSdepthsortmethod='Simple sorting (fast, good)',
+# Rasterize3Dgeometry=1,
+# Dontrasterizecubeaxes=1,
+# Rendertextaspaths=1)
+
+
+
+#######
+# # get active source.
+# warpByVector1 = GetActiveSource()
+
+# # get active view
+# renderView1 = GetActiveViewOrCreate('RenderView')
+
+# # get display properties
+# warpByVector1Display = GetDisplayProperties(warpByVector1, view=renderView1)
+
+# # set scalar coloring using an separate color/opacity maps
+# ColorBy(warpByVector1Display, ('POINTS', 'Displacement dune-VTK', 'Magnitude'), True)
+
+# # get 2D transfer function for 'DisplacementduneVTK'
+# displacementduneVTKTF2D = GetTransferFunction2D('DisplacementduneVTK')
+# displacementduneVTKTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+# displacementduneVTKTF2D.Boxes = []
+# displacementduneVTKTF2D.ScalarRangeInitialized = 0
+# displacementduneVTKTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+# displacementduneVTKTF2D.OutputDimensions = [10, 10]
+
+# # get color transfer function/color map for 'DisplacementduneVTK'
+# displacementduneVTKLUT = GetColorTransferFunction('DisplacementduneVTK')
+# displacementduneVTKLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+# displacementduneVTKLUT.InterpretValuesAsCategories = 0
+# displacementduneVTKLUT.AnnotationsInitialized = 0
+# displacementduneVTKLUT.ShowCategoricalColorsinDataRangeOnly = 0
+# displacementduneVTKLUT.RescaleOnVisibilityChange = 0
+# displacementduneVTKLUT.EnableOpacityMapping = 0
+# displacementduneVTKLUT.TransferFunction2D = displacementduneVTKTF2D
+# displacementduneVTKLUT.Use2DTransferFunction = 0
+# displacementduneVTKLUT.RGBPoints = [0.13888426365894344, 0.267004, 0.004874, 0.329415, 0.14018693868800136, 0.26851, 0.009605, 0.335427, 0.14150149542403362, 0.269944, 0.014625, 0.341379, 0.14282871896835034, 0.271305, 0.019942, 0.347269, 0.14416804812680054, 0.272594, 0.025563, 0.353093, 0.14552028279568993, 0.273809, 0.031497, 0.358853, 0.1468848512053343, 0.274952, 0.037752, 0.364543, 0.1482625683258423, 0.276022, 0.044167, 0.370164, 0.14965320784405547, 0.277018, 0.050344, 0.375715, 0.15105653139389116, 0.277941, 0.056324, 0.381191, 0.1524733770914437, 0.278791, 0.062145, 0.386592, 0.15390314584734208, 0.279566, 0.067836, 0.391917, 0.15534669157172393, 0.280267, 0.073417, 0.397163, 0.15680340388556102, 0.280894, 0.078907, 0.402329, 0.15827415279066817, 0.281446, 0.08432, 0.407414, 0.15975869669185494, 0.281924, 0.089666, 0.412415, 0.16125678112712044, 0.282327, 0.094955, 0.417331, 0.16276930080722193, 0.282656, 0.100196, 0.42216, 0.1642956161886542, 0.28291, 0.105393, 0.426902, 0.16583663884272695, 0.283091, 0.110553, 0.431554, 0.16739171717393184, 0.283197, 0.11568, 0.436115, 0.16896177993186304, 0.283229, 0.120777, 0.440584, 0.1705465692073631, 0.283187, 0.125848, 0.44496, 0.17214581335561926, 0.283072, 0.130895, 0.449241, 0.17376046750366528, 0.282884, 0.13592, 0.453427, 0.1753898489221541, 0.282623, 0.140926, 0.457517, 0.17703493073719828, 0.28229, 0.145912, 0.46151, 0.17869501735362364, 0.281887, 0.150881, 0.465405, 0.18037110023580868, 0.281412, 0.155834, 0.469201, 0.18206247068029957, 0.280868, 0.160771, 0.472899, 0.1837701388353198, 0.280255, 0.165693, 0.476498, 0.18549382418771615, 0.279574, 0.170599, 0.479997, 0.1872332312848427, 0.278826, 0.17549, 0.483397, 0.188989398964167, 0.278012, 0.180367, 0.486697, 0.19076158465972565, 0.277134, 0.185228, 0.489898, 0.1925508467855629, 0.276194, 0.190074, 0.493001, 0.19435642878228532, 0.275191, 0.194905, 0.496005, 0.19617940900942818, 0.274128, 0.199721, 0.498911, 0.19801948801189523, 0.273006, 0.20452, 0.501721, 0.19987635038629262, 0.271828, 0.209303, 0.504434, 0.2017511051186707, 0.270595, 0.214069, 0.507052, 0.20364295950052552, 0.269308, 0.218818, 0.509577, 0.20555304341641273, 0.267968, 0.223549, 0.512008, 0.20748054921947728, 0.26658, 0.228262, 0.514349, 0.20942662808660623, 0.265145, 0.232956, 0.516599, 0.21139096034168567, 0.263663, 0.237631, 0.518762, 0.21337320928337883, 0.262138, 0.242286, 0.520837, 0.21537455878317513, 0.260571, 0.246922, 0.522828, 0.21739416260410258, 0.258965, 0.251537, 0.524736, 0.21943322692734907, 0.257322, 0.25613, 0.526563, 0.22149088956886404, 0.255645, 0.260703, 0.528312, 0.22356837943995359, 0.253935, 0.265254, 0.529983, 0.225665355278041, 0.252194, 0.269783, 0.531579, 0.2277814576456809, 0.250425, 0.27429, 0.533103, 0.22991795035651894, 0.248629, 0.278775, 0.534556, 0.23207393003054946, 0.246811, 0.283237, 0.535941, 0.23425068429760254, 0.244972, 0.287675, 0.53726, 0.2364472927537507, 0.243113, 0.292092, 0.538516, 0.23866506729381692, 0.241237, 0.296485, 0.539709, 0.2409036436111135, 0.239346, 0.300855, 0.540844, 0.2431626379968067, 0.237441, 0.305202, 0.541921, 0.24544339960487593, 0.235526, 0.309527, 0.542944, 0.2477449640536391, 0.233603, 0.313828, 0.543914, 0.2500687059214728, 0.231674, 0.318106, 0.544834, 0.25241364265321464, 0.229739, 0.322361, 0.545706, 0.25478117473075335, 0.227802, 0.326594, 0.546532, 0.25717091324721214, 0.225863, 0.330805, 0.547314, 0.2595824485834184, 0.223925, 0.334994, 0.548053, 0.2620172209963803, 0.221989, 0.339161, 0.548752, 0.2644742009835375, 0.220057, 0.343307, 0.549413, 0.266954855943104, 0.21813, 0.347432, 0.550038, 0.2694581369718562, 0.21621, 0.351535, 0.550627, 0.27198553912068213, 0.214298, 0.355619, 0.551184, 0.27453664722136245, 0.212395, 0.359683, 0.55171, 0.27711102399476334, 0.210503, 0.363727, 0.552206, 0.27971020695274856, 0.208623, 0.367752, 0.552675, 0.2823330970745241, 0.206756, 0.371758, 0.553117, 0.28498126084589803, 0.204903, 0.375746, 0.553533, 0.28765357853536344, 0.203063, 0.379716, 0.553925, 0.29035164614867753, 0.201239, 0.38367, 0.554294, 0.29307432285333307, 0.19943, 0.387607, 0.554642, 0.2958232347313313, 0.197636, 0.391528, 0.554969, 0.2985979302277625, 0.19586, 0.395433, 0.555276, 0.30139793373892976, 0.1941, 0.399323, 0.555565, 0.3042249175292282, 0.192357, 0.403199, 0.555836, 0.3070776862561134, 0.190631, 0.407061, 0.556089, 0.3099579436972952, 0.188923, 0.41091, 0.556326, 0.31286447198436207, 0.187231, 0.414746, 0.556547, 0.3157990070021972, 0.185556, 0.41857, 0.556753, 0.31876106670417526, 0.183898, 0.422383, 0.556944, 0.3217501433709637, 0.182256, 0.426184, 0.55712, 0.3247680221883539, 0.180629, 0.429975, 0.557282, 0.3278134270970504, 0.179019, 0.433756, 0.55743, 0.3308881769241286, 0.177423, 0.437527, 0.557565, 0.33399097156334334, 0.175841, 0.44129, 0.557685, 0.3371236641170137, 0.174274, 0.445044, 0.557792, 0.3402857399878135, 0.172719, 0.448791, 0.557885, 0.3434766571721331, 0.171176, 0.45253, 0.557965, 0.3466983214022952, 0.169646, 0.456262, 0.55803, 0.34994937045177044, 0.168126, 0.459988, 0.558082, 0.3532317459658282, 0.166617, 0.463708, 0.558119, 0.3565440600471939, 0.165117, 0.467423, 0.558141, 0.35988829093085245, 0.163625, 0.471133, 0.558148, 0.36326388927075665, 0.162142, 0.474838, 0.55814, 0.36667027646393835, 0.160665, 0.47854, 0.558115, 0.3701094869292816, 0.159194, 0.482237, 0.558073, 0.3735800664544908, 0.157729, 0.485932, 0.558013, 0.377084087796456, 0.15627, 0.489624, 0.557936, 0.3806200693386926, 0.154815, 0.493313, 0.55784, 0.3841901228985645, 0.153364, 0.497, 0.557724, 0.38779366203486043, 0.151918, 0.500685, 0.557587, 0.39143006907384365, 0.150476, 0.504369, 0.55743, 0.3951015158106538, 0.149039, 0.508051, 0.55725, 0.3988064498357943, 0.147607, 0.511733, 0.557049, 0.4025470838712246, 0.14618, 0.515413, 0.556823, 0.4063218362527627, 0.144759, 0.519093, 0.556572, 0.4101329614004413, 0.143343, 0.522773, 0.556295, 0.41397983327299515, 0.141935, 0.526453, 0.555991, 0.4178617924876243, 0.140536, 0.530132, 0.555659, 0.421781157492199, 0.139147, 0.533812, 0.555298, 0.42573627104915357, 0.13777, 0.537492, 0.554906, 0.4297294952968039, 0.136408, 0.541173, 0.554483, 0.43375914176744557, 0.135066, 0.544853, 0.554029, 0.4378276171131739, 0.133743, 0.548535, 0.553541, 0.4419342530186344, 0.132444, 0.552216, 0.553018, 0.4460783455755166, 0.131172, 0.555899, 0.552459, 0.4502623697872996, 0.129933, 0.559582, 0.551864, 0.45448455650972375, 0.128729, 0.563265, 0.551229, 0.45874742738695673, 0.127568, 0.566949, 0.550556, 0.46304917993575273, 0.126453, 0.570633, 0.549841, 0.467392383319898, 0.125394, 0.574318, 0.549086, 0.471775201088897, 0.124395, 0.578002, 0.548287, 0.4762002508216477, 0.123463, 0.581687, 0.547445, 0.4806668056294682, 0.122606, 0.585371, 0.546557, 0.48517409991123867, 0.121831, 0.589055, 0.545623, 0.4897248255877781, 0.121148, 0.592739, 0.544641, 0.49431705846128, 0.120565, 0.596422, 0.543611, 0.49895354118099394, 0.120092, 0.600104, 0.54253, 0.50363231328819, 0.119738, 0.603785, 0.5414, 0.5083561691165097, 0.119512, 0.607464, 0.540218, 0.5131243326933554, 0.119423, 0.611141, 0.538982, 0.5179359867195936, 0.119483, 0.614817, 0.537692, 0.5227940048908023, 0.119699, 0.61849, 0.536347, 0.5276963330757127, 0.120081, 0.622161, 0.534946, 0.5326458991238233, 0.120638, 0.625828, 0.533488, 0.5376406101943856, 0.12138, 0.629492, 0.531973, 0.5426834493113325, 0.122312, 0.633153, 0.530398, 0.5477735881037079, 0.123444, 0.636809, 0.528763, 0.5529101540834025, 0.12478, 0.640461, 0.527068, 0.5580962149952833, 0.126326, 0.644107, 0.525311, 0.5633295780007267, 0.128087, 0.647749, 0.523491, 0.5686133686553208, 0.130067, 0.651384, 0.521608, 0.5739453527970633, 0.132268, 0.655014, 0.519661, 0.5793287148816879, 0.134692, 0.658636, 0.517649, 0.5847625706016262, 0.137339, 0.662252, 0.515571, 0.5902459885530998, 0.14021, 0.665859, 0.513427, 0.595782243633646, 0.143303, 0.669459, 0.511215, 0.6013689949309269, 0.146616, 0.67305, 0.508936, 0.6070095790569294, 0.150148, 0.676631, 0.506589, 0.6127016109855338, 0.153894, 0.680203, 0.504172, 0.618448490206166, 0.157851, 0.683765, 0.501686, 0.6242492726974678, 0.162016, 0.687316, 0.499129, 0.6301029641616495, 0.166383, 0.690856, 0.496502, 0.6360130606371179, 0.170948, 0.694384, 0.493803, 0.64197706313899, 0.175707, 0.6979, 0.491033, 0.6479985335874546, 0.180653, 0.701402, 0.488189, 0.6540749259050174, 0.185783, 0.704891, 0.485273, 0.6602098691351714, 0.19109, 0.708366, 0.482284, 0.666402355510532, 0.196571, 0.711827, 0.479221, 0.6726513235923147, 0.202219, 0.715272, 0.476084, 0.6789605054925639, 0.20803, 0.718701, 0.472873, 0.6853272334798376, 0.214, 0.722114, 0.469588, 0.6917553099966984, 0.220124, 0.725509, 0.466226, 0.6982420170391147, 0.226397, 0.728888, 0.462789, 0.7047912287055246, 0.232815, 0.732247, 0.459277, 0.7114018691779996, 0.239374, 0.735588, 0.455688, 0.7180728053429959, 0.24607, 0.73891, 0.452024, 0.7248080213273134, 0.252899, 0.742211, 0.448284, 0.7316046692581637, 0.259857, 0.745492, 0.444467, 0.7384668083420066, 0.266941, 0.748751, 0.440573, 0.745391537038756, 0.274149, 0.751988, 0.436601, 0.7523829910493842, 0.281477, 0.755203, 0.432552, 0.7594382141551639, 0.288921, 0.758394, 0.428426, 0.7665614199930958, 0.296479, 0.761561, 0.424223, 0.7737514384570766, 0.304148, 0.764704, 0.419943, 0.7810070371238121, 0.311925, 0.767822, 0.415586, 0.7883325493019095, 0.319809, 0.770914, 0.411152, 0.7957248775217641, 0.327796, 0.77398, 0.40664, 0.8031884367518671, 0.335885, 0.777018, 0.402049, 0.8107200711517398, 0.344074, 0.780029, 0.397381, 0.8183242788886144, 0.35236, 0.783011, 0.392636, 0.8259998108437521, 0.360741, 0.785964, 0.387814, 0.8337453513731921, 0.369214, 0.788888, 0.382914, 0.8415655263967217, 0.377779, 0.791781, 0.377939, 0.8494570292848724, 0.386433, 0.794644, 0.372886, 0.8574245731314847, 0.395174, 0.797475, 0.367757, 0.8654647889946623, 0.404001, 0.800275, 0.362552, 0.8735824787850683, 0.412913, 0.803041, 0.357269, 0.8817763090359193, 0.421908, 0.805774, 0.35191, 0.8900448752630242, 0.430983, 0.808473, 0.346476, 0.8983931157562258, 0.440137, 0.811138, 0.340967, 0.9068175006024546, 0.449368, 0.813768, 0.335384, 0.9153230611521249, 0.458674, 0.816363, 0.329727, 0.9239062009720274, 0.468053, 0.818921, 0.323998, 0.9325720462268475, 0.477504, 0.821444, 0.318195, 0.9413191734060677, 0.487026, 0.823929, 0.312321, 0.9501460831862382, 0.496615, 0.826376, 0.306377, 0.9590580473203706, 0.506271, 0.828786, 0.300362, 0.9680512975343356, 0.515992, 0.831158, 0.294279, 0.9771312049257292, 0.525776, 0.833491, 0.288127, 0.9862939302084405, 0.535621, 0.835785, 0.281908, 0.9955449456967685, 0.545524, 0.838039, 0.275626, 1.0048827317561648, 0.555484, 0.840254, 0.269281, 1.0143056878198, 0.565498, 0.84243, 0.262877, 1.0238194416213033, 0.575563, 0.844566, 0.256415, 1.033419970429907, 0.585678, 0.846661, 0.249897, 1.0431130080321702, 0.595839, 0.848717, 0.243329, 1.0528944558901863, 0.606045, 0.850733, 0.236712, 1.062770155841981, 0.616293, 0.852709, 0.230052, 1.072738485638099, 0.626579, 0.854645, 0.223353, 1.0827977366317674, 0.636902, 0.856542, 0.21662, 1.0929539165751945, 0.647257, 0.8584, 0.209861, 1.1032027310985248, 0.657642, 0.860219, 0.203082, 1.1135503011682315, 0.668054, 0.861999, 0.196293, 1.1239922514883631, 0.678489, 0.863742, 0.189503, 1.134534818373148, 0.688944, 0.865448, 0.182725, 1.1451762700290444, 0.699415, 0.867117, 0.175971, 1.1559147824311262, 0.709898, 0.868751, 0.169257, 1.1667567690113314, 0.720391, 0.87035, 0.162603, 1.1776976454180035, 0.730889, 0.871916, 0.156029, 1.1887439459422569, 0.741388, 0.873449, 0.149561, 1.1998909998417207, 0.751884, 0.874951, 0.143228, 1.211145464544241, 0.762373, 0.876424, 0.137064, 1.222502581288726, 0.772852, 0.877868, 0.131109, 1.2339691329602271, 0.783315, 0.879285, 0.125405, 1.245543235985196, 0.79376, 0.880678, 0.120005, 1.2572229064752396, 0.804182, 0.882046, 0.114965, 1.2690151199562907, 0.814576, 0.883393, 0.110347, 1.280914890289232, 0.82494, 0.88472, 0.106217, 1.2929293244516642, 0.83527, 0.886029, 0.102646, 1.3050533423421917, 0.845561, 0.887322, 0.099702, 1.3172941848672497, 0.85581, 0.888601, 0.097452, 1.3296498412630218, 0.866013, 0.889868, 0.095953, 1.3421181936769844, 0.876168, 0.891125, 0.09525, 1.3547066886647299, 0.886271, 0.892374, 0.095374, 1.3674100033928986, 0.89632, 0.893616, 0.096335, 1.3802357247451622, 0.906311, 0.894855, 0.098125, 1.3931784295809833, 0.916242, 0.896091, 0.100717, 1.4062458477565516, 0.926106, 0.89733, 0.104071, 1.4194358327291279, 0.935904, 0.89857, 0.108131, 1.43274612363599, 0.945636, 0.899815, 0.112838, 1.4461846698691572, 0.9553, 0.901065, 0.118128, 1.4597457891654002, 0.964894, 0.902323, 0.123941, 1.473437580720618, 0.974417, 0.90359, 0.130215, 1.4872542551910566, 0.983868, 0.904867, 0.136897, 1.5012040643995004, 0.993248, 0.906157, 0.143936]
+# displacementduneVTKLUT.UseLogScale = 1
+# displacementduneVTKLUT.UseOpacityControlPointsFreehandDrawing = 0
+# displacementduneVTKLUT.ShowDataHistogram = 0
+# displacementduneVTKLUT.AutomaticDataHistogramComputation = 0
+# displacementduneVTKLUT.DataHistogramNumberOfBins = 10
+# displacementduneVTKLUT.ColorSpace = 'Diverging'
+# displacementduneVTKLUT.UseBelowRangeColor = 0
+# displacementduneVTKLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+# displacementduneVTKLUT.UseAboveRangeColor = 0
+# displacementduneVTKLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+# displacementduneVTKLUT.NanColor = [1.0, 0.0, 0.0]
+# displacementduneVTKLUT.NanOpacity = 1.0
+# displacementduneVTKLUT.Discretize = 1
+# displacementduneVTKLUT.NumberOfTableValues = 256
+# displacementduneVTKLUT.ScalarRangeInitialized = 1.0
+# displacementduneVTKLUT.HSVWrap = 0
+# displacementduneVTKLUT.VectorComponent = 0
+# displacementduneVTKLUT.VectorMode = 'Magnitude'
+# displacementduneVTKLUT.AllowDuplicateScalars = 1
+# displacementduneVTKLUT.Annotations = []
+# displacementduneVTKLUT.ActiveAnnotatedValues = []
+# displacementduneVTKLUT.IndexedColors = []
+# displacementduneVTKLUT.IndexedOpacities = []
+
+# # Hide the scalar bar for this color map if no visible data is colored by it.
+# HideScalarBarIfNotNeeded(displacementduneVTKLUT, renderView1)
+
+# # rescale color and/or opacity maps used to include current data range
+# warpByVector1Display.RescaleTransferFunctionToDataRange(True, False)
+
+# # show color bar/color legend
+# warpByVector1Display.SetScalarBarVisibility(renderView1, True)
+
+# # get separate 2D transfer function for 'DisplacementduneVTK'
+# separate_warpByVector1Display_DisplacementduneVTKTF2D = GetTransferFunction2D('DisplacementduneVTK', warpByVector1Display, separate=True)
+# separate_warpByVector1Display_DisplacementduneVTKTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+# separate_warpByVector1Display_DisplacementduneVTKTF2D.Boxes = []
+# separate_warpByVector1Display_DisplacementduneVTKTF2D.ScalarRangeInitialized = 0
+# separate_warpByVector1Display_DisplacementduneVTKTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+# separate_warpByVector1Display_DisplacementduneVTKTF2D.OutputDimensions = [10, 10]
+
+# # get separate color transfer function/color map for 'DisplacementduneVTK'
+# separate_warpByVector1Display_DisplacementduneVTKLUT = GetColorTransferFunction('DisplacementduneVTK', warpByVector1Display, separate=True)
+# separate_warpByVector1Display_DisplacementduneVTKLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+# separate_warpByVector1Display_DisplacementduneVTKLUT.InterpretValuesAsCategories = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.AnnotationsInitialized = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.ShowCategoricalColorsinDataRangeOnly = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.RescaleOnVisibilityChange = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.EnableOpacityMapping = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.TransferFunction2D = separate_warpByVector1Display_DisplacementduneVTKTF2D
+# separate_warpByVector1Display_DisplacementduneVTKLUT.Use2DTransferFunction = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.RGBPoints = [0.016965557100507393, 0.231373, 0.298039, 0.752941, 0.25047902350935686, 0.865003, 0.865003, 0.865003, 0.4839924899182063, 0.705882, 0.0156863, 0.14902]
+# separate_warpByVector1Display_DisplacementduneVTKLUT.UseLogScale = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.UseOpacityControlPointsFreehandDrawing = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.ShowDataHistogram = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.AutomaticDataHistogramComputation = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.DataHistogramNumberOfBins = 10
+# separate_warpByVector1Display_DisplacementduneVTKLUT.ColorSpace = 'Diverging'
+# separate_warpByVector1Display_DisplacementduneVTKLUT.UseBelowRangeColor = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+# separate_warpByVector1Display_DisplacementduneVTKLUT.UseAboveRangeColor = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+# separate_warpByVector1Display_DisplacementduneVTKLUT.NanColor = [1.0, 1.0, 0.0]
+# separate_warpByVector1Display_DisplacementduneVTKLUT.NanOpacity = 1.0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.Discretize = 1
+# separate_warpByVector1Display_DisplacementduneVTKLUT.NumberOfTableValues = 256
+# separate_warpByVector1Display_DisplacementduneVTKLUT.ScalarRangeInitialized = 1.0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.HSVWrap = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.VectorComponent = 0
+# separate_warpByVector1Display_DisplacementduneVTKLUT.VectorMode = 'Magnitude'
+# separate_warpByVector1Display_DisplacementduneVTKLUT.AllowDuplicateScalars = 1
+# separate_warpByVector1Display_DisplacementduneVTKLUT.Annotations = []
+# separate_warpByVector1Display_DisplacementduneVTKLUT.ActiveAnnotatedValues = []
+# separate_warpByVector1Display_DisplacementduneVTKLUT.IndexedColors = []
+# separate_warpByVector1Display_DisplacementduneVTKLUT.IndexedOpacities = []
+
+# # get separate opacity transfer function/opacity map for 'DisplacementduneVTK'
+# separate_warpByVector1Display_DisplacementduneVTKPWF = GetOpacityTransferFunction('DisplacementduneVTK', warpByVector1Display, separate=True)
+# separate_warpByVector1Display_DisplacementduneVTKPWF.Points = [0.016965557100507393, 0.0, 0.5, 0.0, 0.4839924899182063, 1.0, 0.5, 0.0]
+# separate_warpByVector1Display_DisplacementduneVTKPWF.AllowDuplicateScalars = 1
+# separate_warpByVector1Display_DisplacementduneVTKPWF.UseLogScale = 0
+# separate_warpByVector1Display_DisplacementduneVTKPWF.ScalarRangeInitialized = 1
+
+# # Apply a preset using its name. Note this may not work as expected when presets have duplicate names.
+# separate_warpByVector1Display_DisplacementduneVTKLUT.ApplyPreset('Viridis (matplotlib)', True)
+
+# # hide color bar/color legend
+# warpByVector1Display.SetScalarBarVisibility(renderView1, False)
+
+
+#####################################
+
+# get layout
+layout1 = GetLayout()
+
+#--------------------------------
+# saving layout sizes for layouts
+
+# layout/tab size in pixels
+layout1.SetSize(2756, 1165)
+
+#-----------------------------------
+# saving camera placements for views
+
+# current camera placement for renderView1
+renderView1.InteractionMode = '2D'
+renderView1.CameraPosition = [-2.2403573446265757, 13.577405127683948, -5.303558746361971]
+renderView1.CameraFocalPoint = [3.140000104904175, 1.570796363055706, -0.24782317876815796]
+renderView1.CameraViewUp = [0.12586597003697914, -0.3365546684060209, -0.9332141837545996]
+renderView1.CameraParallelScale = 2.060390665888721
+
+ExportView(outputName, view=renderView1)
+
+#================================================================
+# addendum: following script captures some of the application
+# state to faithfully reproduce the visualization during playback
+#================================================================
+
+
+
+#--------------------------------------------
+# uncomment the following to render all views
+# RenderAllViews()
+# alternatively, if you want to write images, you can use SaveScreenshot(...).
\ No newline at end of file
diff --git a/experiment/macro-problem/validation/validation.py b/experiment/macro-problem/validation/validation.py
new file mode 100644
index 0000000000000000000000000000000000000000..95fd2bf48329baa68bd086d42d8015cc4e2f7c89
--- /dev/null
+++ b/experiment/macro-problem/validation/validation.py
@@ -0,0 +1,282 @@
+import math
+import numpy as np
+
+class ParameterSet(dict):
+ def __init__(self, *args, **kwargs):
+ super(ParameterSet, self).__init__(*args, **kwargs)
+ self.__dict__ = self
+
+parameterSet = ParameterSet()
+#############################################
+# Paths
+#############################################
+parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_validation'
+parameterSet.baseName= 'validation'
+
+#############################################
+# Grid parameters
+#############################################
+nX=1
+nY=1
+
+parameterSet.structuredGrid = 'simplex'
+parameterSet.lower = '0 0'
+# parameterSet.upper = '3.14159265359 3.14159265359' # pi
+parameterSet.upper = '6.28 3.14159265359' # pi
+parameterSet.elements = str(nX)+' '+ str(nY)
+
+parameterSet.macroGridLevel = 2
+#############################################
+# GFE parameters
+#############################################
+parameterSet.order = 1
+
+parameterSet.conforming_DiscreteJacobian = 1
+
+parameterSet.measure_analyticalError = True
+parameterSet.measure_isometryError = True
+
+# Compare energy values.
+parameterSet.compare_EnergyValues = True
+parameterSet.analytical_energy = 9.253
+#############################################
+# Solver parameters
+#############################################
+# Tolerance of the multigrid solver
+parameterSet.tolerance = 1e-12
+# Maximum number of multigrid iterations
+parameterSet.maxProximalNewtonSteps = 200
+# Initial regularization
+parameterSet.initialRegularization = 200
+# Measure convergence
+parameterSet.instrumented = 0
+############################
+# Problem specifications
+############################
+# Dimension of the domain (only used for numerical-test python files)
+parameterSet.dim = 2
+
+# # Dimension of the target space
+# parameterSet.targetDim = 3
+# parameterSet.targetSpace = 'BendingIsometry'
+
+#############################################
+# Effective prestrain
+############################################
+# parameterSet.prestrainFlag = True
+# parameterSet.macroscopically_varying_microstructure = False
+# parameterSet.read_effectiveQuantities_from_Parset = True # Otherwise the Micro/Cell-Problem is solved once to obtain the quantities.
+
+
+# # parameterSet.effectivePrestrain = '1.0 1.0 0.0' # b1 b2 b12 #deprecated
+
+# effectivePrestrain= np.array([[1.0, 0.0],
+# [0.0, 1.0]]);
+
+
+# #############################################
+# # Effective elastic moduli
+# ############################################
+# # input-vector: [q_1,q_2,q_3,q_12,q_13,q_23]
+# # is assembled into a matrix where the off-diagonal entries are divided by 2 (compare with definition in the paper)
+# # ( q_1 , 0.5*q_12 , 0.5*q_13 )
+# # ( 0.5*q_12 , q_2 , 0.5*q_23 )
+# # ( 0.5*q_13 , 0.5*q_23 , q_3 )
+
+# # parameterSet.effectiveQuadraticForm = '1.0 4.0 2.0 1.0 0.0 0.0' #deprecated
+
+# effectiveQuadraticForm = np.array([[1.0, 0.5, 0.0],
+# [0.5, 4.0, 0.0],
+# [0.0, 0.0, 2.0]]);
+
+
+
+
+#############################################
+# MICROSTRUCTURE
+############################################
+parameterSet.printMicroOutput = True
+parameterSet.VTKwriteMacroPhaseIndicator = False
+parameterSet.MacroPhaseSubsamplingRefinement = 3
+
+# Microstructure used: Isotropic matrix material (phase 2) with prestrained fibers (phase 1) in the top layer aligned with the e2-direction.
+class GlobalMicrostructure:
+ """ Class that represents the global microstructure.
+
+ The global microstructure can be defined individually
+ for different (finitely many) macroscopic phases.
+ Each macroscopic phase corresponds to a 'LocalMicrostructure_'
+ sub-class that defines the necessary data for the local
+ micro-problem.
+
+ Currently, there are three possibilities for the LocalMicrostructure:
+ (1) Read the effective quantities (Qhom,Beff) from this parset.
+ (Constant local microstructure)
+ (2) Solve the micro-problem once to obtain the effective quantities.
+ (Constant local microstructure)
+ (3) Solve for micro-problem for each macroscopic quadrature point.
+ (Macroscopocally varying local microstructure))
+ """
+ def __init__(self,macroPoint=[0,0]):
+ self.macroPhases = 1
+
+ # define first local microstructure options.
+ self.macroPhase1_constantMicrostructure = True
+ self.macroPhase1_readEffectiveQuantities = True;
+
+
+ def macroPhaseIndicator(self,y): #y :macroscopic point
+ """ Indicatorfunction that determines the domains
+ i.e. macro-phases of different local microstructures.
+ """
+ return 1;
+
+ # Represents the local microstructure in Phase 1
+ class LocalMicrostructure_1:
+ def __init__(self,macroPoint=[0,0]):
+ # gamma = 1.0
+ # self.macroPoint = macroPoint
+ self.gamma = 1.0 #in the future this might change depending on macroPoint.
+ self.phases = 2 #in the future this might change depending on macroPoint.
+
+ # self.effectivePrestrain= np.array([[1.0, 0.0],
+ # [0.0, 1.0]]);
+
+ # self.effectiveQuadraticForm = np.array([[1.0, 0.5, 0.0],
+ # [0.5, 4.0, 0.0],
+ # [0.0, 0.0, 2.0]]);
+
+ # TEST:
+ self.effectivePrestrain= np.array([[0.456, 0.0],
+ [0.0, 0.456]]);
+
+ self.effectiveQuadraticForm = np.array([[16.62, 0.046, 0.0],
+ [0.046, 16.62, 0.0],
+ [0.0, 0.0, 14.38]]);
+
+
+
+#############################################
+# VTK/Output
+#############################################
+# Write discrete solution as .vtk-File
+parameterSet.writeVTK = 1
+parameterSet.vtkwrite_analyticalSolution = 1
+parameterSet.vtkWrite_analyticalSurfaceNormal = 0
+
+# The grid can be refined several times for a higher resolution in the VTK-file.
+parameterSet.subsamplingRefinement = 0
+
+# Write Dof-Vector to .txt-file
+parameterSet.writeDOFvector = 0
+#############################################f
+# Dirichlet boundary indicator
+#############################################
+
+# Constraint y=0 boundary
+# def dirichlet_indicator(x) :
+# if((x[1] <= 0.01) ):
+# return True
+# else:
+# return False
+
+def dirichlet_indicator(x) :
+ return False
+
+
+#############################################
+# Initial iterate function
+#############################################
+def f(x):
+ return [x[0], x[1], 0]
+
+
+def df(x):
+ return ((1,0),
+ (0,1),
+ (0,0))
+
+#start with analytical solution:
+# def f(x):
+# return u(x)
+
+# def df(x):
+# return du(x)
+
+fdf = (f, df)
+
+#############################################
+# Force
+############################################
+parameterSet.assemble_force_term = False
+
+
+def force(x):
+ return [0, 0, 0]
+#############################################
+# Analytical reference Solution
+#############################################
+
+#Rotation around z-axis:
+def R(alpha):
+ return np.array([[math.cos(alpha), -math.sin(alpha), 0],
+ [math.sin(alpha), math.cos(alpha), 0],
+ [0, 0, 1]
+ ])
+#Rotation around z-axis:
+def R_z(alpha):
+ return np.array([[math.cos(alpha), -math.sin(alpha), 0],
+ [math.sin(alpha), math.cos(alpha), 0],
+ [0, 0, 1]
+ ])
+
+#Rotation around x-axis:
+def R_x(alpha):
+ return np.array([[1,0,0],
+ [0 , math.cos(alpha), -math.sin(alpha)],
+ [0 , math.sin(alpha), math.cos(alpha)]
+ ])
+
+#Rotate solution
+alpha= math.pi/2.0
+
+kappa = 9.0/8.0
+
+def deformation(x):
+ mat = np.array([-(1.0/kappa)*math.sin(-kappa*x[1]), -x[0], 1.0*((1.0/kappa)*math.cos(-kappa*x[1])-(1.0/kappa))] )
+
+ rotation = np.dot(R_x(0),R_z(alpha))
+ out = np.dot(rotation, mat)
+
+ return out
+
+
+def deformationGradient(x):
+ dmat = np.array([[0, math.cos(-kappa*x[1])],
+ [-1.0, 0],
+ [0, 1.0*(math.sin(-kappa*x[1])) ]])
+
+ rotation = np.dot(R_x(0),R_z(alpha))
+ out = np.dot(rotation,dmat)
+
+ # out = np.dot(S_z,out)
+
+ return out
+
+def displacement(x):
+ return deformation(x) - np.array([x[0], x[1], 0])
+
+def displacementGradient(x):
+ return deformationGradient(x) - np.array([[1.0, 0.0], [0.0,1.0], [0.0,0.0]])
+
+
+def surfaceNormal(x):
+ dmat = deformationGradient(x);
+
+ normal = np.array([(dmat[1][0]*dmat[2][1])-(dmat[1][1]*dmat[2][0]), (dmat[2][0]*dmat[0][1]) - (dmat[0][0]*dmat[2][1]), (dmat[0][0]*dmat[1][1]) - (dmat[0][1]*dmat[1][0]) ])
+
+ return normal
+
+
+# udu = (u, du)
+analyticalSol = (displacement, displacementGradient)
\ No newline at end of file
diff --git a/experiment/macro-problem/variableBC/ParaviewVariableBC.py b/experiment/macro-problem/variableBC/ParaviewVariableBC.py
new file mode 100644
index 0000000000000000000000000000000000000000..d699b6dfdd91be89ea409150e538fc9f3402ca71
--- /dev/null
+++ b/experiment/macro-problem/variableBC/ParaviewVariableBC.py
@@ -0,0 +1,1916 @@
+#### import the simple module from the paraview
+from paraview.simple import *
+# from paraview import *
+#### disable automatic camera reset on 'Show'
+paraview.simple._DisableFirstRenderCameraReset()
+
+
+gridLevel = 3
+
+AddGlyph = True
+# AddGlyph = False
+
+#Boundary length segment parameter
+deltaArray = [0.25,0.5,1.0,1.5,2.0]
+deltaArray = [1.5]
+
+
+
+for i in range(0, len(deltaArray)):
+ # Reset/Reopen Session.
+ Disconnect()
+ Connect()
+ ResetSession()
+
+
+
+ delta = deltaArray[i]
+
+ """"
+ remove decimal points for string
+ """
+ # deltaString = str(delta);
+ deltaString = (str(delta)).replace('.', '')
+
+ print('deltaString:', deltaString)
+
+
+ basePath = '/home/klaus/Desktop/Dune_TestTest/dune-microstructure/outputs_cylindrical_2variableBC/'
+ experimentName = 'cylindrical_2variableBC_delta' + deltaString + '_level'+ str(gridLevel) + '_NC.vtu'
+ fileName = basePath + experimentName
+ print('fileName:', fileName)
+ # fileName = ['/home/klaus/Desktop/Dune_TestTest/dune-microstructure/outputs_cylindrical_2variableBC/cylindrical_2variableBC_delta01_level3_NC.vtu']
+
+ outputPath = '/home/klaus/Desktop/'
+ outputName = outputPath + 'VariableBC_delta' + deltaString
+
+ if AddGlyph:
+ outputName = outputName + '_normalfield'
+
+
+ #----------------------- Create Box to visualize boundary conditions:
+ # create a new 'Box'
+ box1 = Box(registrationName='Box1')
+
+ # get active view
+ renderView1 = GetActiveViewOrCreate('RenderView')
+
+ # show data in view
+ box1Display = Show(box1, renderView1, 'GeometryRepresentation')
+
+ # trace defaults for the display properties.
+ box1Display.Representation = 'Surface'
+ box1Display.ColorArrayName = [None, '']
+ box1Display.SelectTCoordArray = 'TCoords'
+ box1Display.SelectNormalArray = 'Normals'
+ box1Display.SelectTangentArray = 'None'
+ box1Display.OSPRayScaleArray = 'Normals'
+ box1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+ box1Display.SelectOrientationVectors = 'None'
+ box1Display.ScaleFactor = 0.1
+ box1Display.SelectScaleArray = 'None'
+ box1Display.GlyphType = 'Arrow'
+ box1Display.GlyphTableIndexArray = 'None'
+ box1Display.GaussianRadius = 0.005
+ box1Display.SetScaleArray = ['POINTS', 'Normals']
+ box1Display.ScaleTransferFunction = 'PiecewiseFunction'
+ box1Display.OpacityArray = ['POINTS', 'Normals']
+ box1Display.OpacityTransferFunction = 'PiecewiseFunction'
+ box1Display.DataAxesGrid = 'GridAxesRepresentation'
+ box1Display.PolarAxes = 'PolarAxesRepresentation'
+
+ # init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+ box1Display.ScaleTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+ # init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+ box1Display.OpacityTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+
+ # Properties modified on box1
+ box1.XLength = 2.0
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Properties modified on box1
+ box1.XLength = 0.1
+ box1.YLength = delta
+ box1.ZLength = 0.1
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Properties modified on box1Display
+ box1Display.Position = [-1.0, 0.0, 0.0]
+
+ # Properties modified on box1Display.DataAxesGrid
+ box1Display.DataAxesGrid.Position = [-1.0, 0.0, 0.0]
+
+ # Properties modified on box1Display.PolarAxes
+ box1Display.PolarAxes.Translation = [-1.0, 0.0, 0.0]
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+ #-------------------------------------------------------------------------------
+
+
+
+ # create a new 'XML Unstructured Grid Reader'
+ cylindrical_2variableBC_delta15_level3_NCvtu = XMLUnstructuredGridReader(registrationName=experimentName, FileName=[fileName])
+ cylindrical_2variableBC_delta15_level3_NCvtu.CellArrayStatus = []
+ cylindrical_2variableBC_delta15_level3_NCvtu.PointArrayStatus = ['Displacement dune-VTK', 'IsometryErrorFunction', 'SurfaceNormalDiscrete']
+ cylindrical_2variableBC_delta15_level3_NCvtu.TimeArray = 'TimeValue'
+
+ # Properties modified on cylindrical_2variableBC_delta15_level3_NCvtu
+ cylindrical_2variableBC_delta15_level3_NCvtu.TimeArray = 'None'
+
+ # get active view
+ renderView1 = GetActiveViewOrCreate('RenderView')
+
+ # show data in view
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay = Show(cylindrical_2variableBC_delta15_level3_NCvtu, renderView1, 'UnstructuredGridRepresentation')
+
+ # get 2D transfer function for 'IsometryErrorFunction'
+ isometryErrorFunctionTF2D = GetTransferFunction2D('IsometryErrorFunction')
+ isometryErrorFunctionTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ isometryErrorFunctionTF2D.Boxes = []
+ isometryErrorFunctionTF2D.ScalarRangeInitialized = 0
+ isometryErrorFunctionTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+ isometryErrorFunctionTF2D.OutputDimensions = [10, 10]
+
+ # get color transfer function/color map for 'IsometryErrorFunction'
+ isometryErrorFunctionLUT = GetColorTransferFunction('IsometryErrorFunction')
+ isometryErrorFunctionLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ isometryErrorFunctionLUT.InterpretValuesAsCategories = 0
+ isometryErrorFunctionLUT.AnnotationsInitialized = 0
+ isometryErrorFunctionLUT.ShowCategoricalColorsinDataRangeOnly = 0
+ isometryErrorFunctionLUT.RescaleOnVisibilityChange = 0
+ isometryErrorFunctionLUT.EnableOpacityMapping = 0
+ isometryErrorFunctionLUT.TransferFunction2D = isometryErrorFunctionTF2D
+ isometryErrorFunctionLUT.Use2DTransferFunction = 0
+ isometryErrorFunctionLUT.RGBPoints = [0.0, 0.231373, 0.298039, 0.752941, 0.030321702361106873, 0.865003, 0.865003, 0.865003, 0.060643404722213745, 0.705882, 0.0156863, 0.14902]
+ isometryErrorFunctionLUT.UseLogScale = 0
+ isometryErrorFunctionLUT.UseOpacityControlPointsFreehandDrawing = 0
+ isometryErrorFunctionLUT.ShowDataHistogram = 0
+ isometryErrorFunctionLUT.AutomaticDataHistogramComputation = 0
+ isometryErrorFunctionLUT.DataHistogramNumberOfBins = 10
+ isometryErrorFunctionLUT.ColorSpace = 'Diverging'
+ isometryErrorFunctionLUT.UseBelowRangeColor = 0
+ isometryErrorFunctionLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+ isometryErrorFunctionLUT.UseAboveRangeColor = 0
+ isometryErrorFunctionLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+ isometryErrorFunctionLUT.NanColor = [1.0, 1.0, 0.0]
+ isometryErrorFunctionLUT.NanOpacity = 1.0
+ isometryErrorFunctionLUT.Discretize = 1
+ isometryErrorFunctionLUT.NumberOfTableValues = 256
+ isometryErrorFunctionLUT.ScalarRangeInitialized = 1.0
+ isometryErrorFunctionLUT.HSVWrap = 0
+ isometryErrorFunctionLUT.VectorComponent = 0
+ isometryErrorFunctionLUT.VectorMode = 'Magnitude'
+ isometryErrorFunctionLUT.AllowDuplicateScalars = 1
+ isometryErrorFunctionLUT.Annotations = []
+ isometryErrorFunctionLUT.ActiveAnnotatedValues = []
+ isometryErrorFunctionLUT.IndexedColors = []
+ isometryErrorFunctionLUT.IndexedOpacities = []
+
+ # get opacity transfer function/opacity map for 'IsometryErrorFunction'
+ isometryErrorFunctionPWF = GetOpacityTransferFunction('IsometryErrorFunction')
+ isometryErrorFunctionPWF.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ isometryErrorFunctionPWF.AllowDuplicateScalars = 1
+ isometryErrorFunctionPWF.UseLogScale = 0
+ isometryErrorFunctionPWF.ScalarRangeInitialized = 1
+
+ # trace defaults for the display properties.
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Selection = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Representation = 'Surface'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LookupTable = isometryErrorFunctionLUT
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MapScalars = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MultiComponentsMapping = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.InterpolateScalarsBeforeMapping = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Opacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PointSize = 2.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LineWidth = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.RenderLinesAsTubes = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.RenderPointsAsSpheres = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Interpolation = 'Gouraud'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Specular = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SpecularColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SpecularPower = 100.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Luminosity = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Ambient = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Diffuse = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Roughness = 0.3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Metallic = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EdgeTint = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Anisotropy = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.AnisotropyRotation = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BaseIOR = 1.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatStrength = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatIOR = 2.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatRoughness = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectTCoordArray = 'None'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectNormalArray = 'None'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectTangentArray = 'None'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Texture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.RepeatTextures = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.InterpolateTextures = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SeamlessU = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SeamlessV = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseMipmapTextures = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ShowTexturesOnBackface = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BaseColorTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NormalTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NormalScale = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatNormalTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatNormalScale = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaterialTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OcclusionStrength = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.AnisotropyTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EmissiveTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EmissiveFactor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.FlipTextures = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BackfaceRepresentation = 'Follow Frontface'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BackfaceOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Position = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Scale = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Orientation = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Origin = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Pickable = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Triangulate = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseShaderReplacements = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ShaderReplacements = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NonlinearSubdivisionLevel = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseDataPartitions = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayUseScaleArray = 'All Approximate'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayScaleArray = 'IsometryErrorFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayScaleFunction = 'PiecewiseFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayMaterial = 'None'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BlockSelectors = ['/']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BlockColors = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BlockOpacities = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Orient = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OrientationMode = 'Direction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectOrientationVectors = 'Displacement dune-VTK'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Scaling = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleMode = 'No Data Scaling Off'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleFactor = 0.2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectScaleArray = 'IsometryErrorFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType = 'Arrow'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseGlyphTable = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphTableIndexArray = 'IsometryErrorFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseCompositeGlyphTable = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseGlyphCullingAndLOD = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LODValues = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ColorByLODIndex = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GaussianRadius = 0.01
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ShaderPreset = 'Sphere'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CustomTriangleScale = 3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+ """
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Emissive = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleByArray = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleArrayComponent = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseScaleFunction = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleTransferFunction = 'PiecewiseFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityByArray = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityArrayComponent = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityTransferFunction = 'PiecewiseFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid = 'GridAxesRepresentation'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelFontSize = 18
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelJustification = 'Left'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelFontSize = 18
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelJustification = 'Left'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes = 'PolarAxesRepresentation'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScalarOpacityFunction = isometryErrorFunctionPWF
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScalarOpacityUnitDistance = 0.22272467953508482
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseSeparateOpacityArray = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityComponent = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectMapper = 'Projected tetra'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SamplingDimensions = [128, 128, 128]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseFloatingPointFrameBuffer = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NumberOfSteps = 40
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.StepSize = 0.25
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NormalizeVectors = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EnhancedLIC = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ColorMode = 'Blend'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LICIntensity = 0.8
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MapModeBias = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EnhanceContrast = 'Off'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LowLICContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.HighLICContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LowColorContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.HighColorContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.AntiAlias = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaskOnSurface = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaskThreshold = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaskIntensity = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaskColor = [0.5, 0.5, 0.5]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GenerateNoiseTexture = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NoiseType = 'Gaussian'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NoiseTextureSize = 128
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NoiseGrainSize = 2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MinNoiseValue = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaxNoiseValue = 0.8
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NumberOfNoiseLevels = 1024
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ImpulseNoiseProbability = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ImpulseNoiseBackgroundValue = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NoiseGeneratorSeed = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CompositeStrategy = 'AUTO'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseLICForLOD = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.WriteLog = ''
+
+ # init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayScaleFunction.UseLogScale = 0
+
+ # init the 'Arrow' selected for 'GlyphType'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.TipResolution = 6
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.TipRadius = 0.1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.TipLength = 0.35
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.ShaftResolution = 6
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.ShaftRadius = 0.03
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.Invert = 0
+
+ # init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleTransferFunction.UseLogScale = 0
+
+ # init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityTransferFunction.UseLogScale = 0
+
+ # init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitle = 'X Axis'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitle = 'Y Axis'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitle = 'Z Axis'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.FacesToRender = 63
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.CullBackface = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.CullFrontface = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ShowGrid = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ShowEdges = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ShowTicks = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.LabelUniqueEdgesOnly = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.AxesToLabel = 63
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XAxisNotation = 'Mixed'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XAxisPrecision = 2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XAxisUseCustomLabels = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XAxisLabels = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YAxisNotation = 'Mixed'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YAxisPrecision = 2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YAxisUseCustomLabels = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YAxisLabels = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZAxisNotation = 'Mixed'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZAxisPrecision = 2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZAxisUseCustomLabels = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZAxisLabels = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.UseCustomBounds = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+ # init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Visibility = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Translation = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Scale = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.EnableCustomBounds = [0, 0, 0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.EnableCustomRange = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.CustomRange = [0.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialAxesVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DrawRadialGridlines = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarArcsVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DrawPolarArcsGridlines = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.NumberOfRadialAxes = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.AutoSubdividePolarAxis = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.NumberOfPolarAxis = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.MinimumRadius = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.MinimumAngle = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.MaximumAngle = 90.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialAxesOriginToPolarAxis = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Ratio = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitle = 'Radial Distance'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarLabelVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarLabelFormat = '%-#6.3g'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarLabelExponentLocation = 'Labels'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialLabelVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialLabelFormat = '%-#3.1f'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialLabelLocation = 'Bottom'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialUnitsVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ScreenSize = 10.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.EnableDistanceLOD = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DistanceLODThreshold = 0.7
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.EnableViewAngleLOD = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ViewAngleLODThreshold = 0.7
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SmallestVisiblePolarAngle = 0.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarTicksVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcTicksOriginToPolarAxis = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.TickLocation = 'Both'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.AxisTickVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.AxisMinorTickVisibility = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcTickVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcMinorTickVisibility = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DeltaAngleMajor = 10.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DeltaAngleMinor = 5.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisMajorTickSize = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTickRatioSize = 0.3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisMajorTickThickness = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTickRatioThickness = 0.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcMajorTickSize = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcTickRatioSize = 0.3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcMajorTickThickness = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcTickRatioThickness = 0.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Use2DMode = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.UseLogAxis = 0
+
+ # show color bar/color legend
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+ # find source
+ box1 = FindSource('Box1')
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # set scalar coloring
+ ColorBy(cylindrical_2variableBC_delta15_level3_NCvtuDisplay, ('POINTS', 'Displacement dune-VTK', 'Magnitude'))
+
+ # Hide the scalar bar for this color map if no visible data is colored by it.
+ HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+ # rescale color and/or opacity maps used to include current data range
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.RescaleTransferFunctionToDataRange(True, False)
+
+ # show color bar/color legend
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+ # get 2D transfer function for 'DisplacementduneVTK'
+ displacementduneVTKTF2D = GetTransferFunction2D('DisplacementduneVTK')
+ displacementduneVTKTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ displacementduneVTKTF2D.Boxes = []
+ displacementduneVTKTF2D.ScalarRangeInitialized = 0
+ displacementduneVTKTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+ displacementduneVTKTF2D.OutputDimensions = [10, 10]
+
+ # get color transfer function/color map for 'DisplacementduneVTK'
+ displacementduneVTKLUT = GetColorTransferFunction('DisplacementduneVTK')
+ displacementduneVTKLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ displacementduneVTKLUT.InterpretValuesAsCategories = 0
+ displacementduneVTKLUT.AnnotationsInitialized = 0
+ displacementduneVTKLUT.ShowCategoricalColorsinDataRangeOnly = 0
+ displacementduneVTKLUT.RescaleOnVisibilityChange = 0
+ displacementduneVTKLUT.EnableOpacityMapping = 0
+ displacementduneVTKLUT.TransferFunction2D = displacementduneVTKTF2D
+ displacementduneVTKLUT.Use2DTransferFunction = 0
+ displacementduneVTKLUT.RGBPoints = [0.0, 0.231373, 0.298039, 0.752941, 0.6756904005417563, 0.865003, 0.865003, 0.865003, 1.3513808010835127, 0.705882, 0.0156863, 0.14902]
+ displacementduneVTKLUT.UseLogScale = 0
+ displacementduneVTKLUT.UseOpacityControlPointsFreehandDrawing = 0
+ displacementduneVTKLUT.ShowDataHistogram = 0
+ displacementduneVTKLUT.AutomaticDataHistogramComputation = 0
+ displacementduneVTKLUT.DataHistogramNumberOfBins = 10
+ displacementduneVTKLUT.ColorSpace = 'Diverging'
+ displacementduneVTKLUT.UseBelowRangeColor = 0
+ displacementduneVTKLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+ displacementduneVTKLUT.UseAboveRangeColor = 0
+ displacementduneVTKLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+ displacementduneVTKLUT.NanColor = [1.0, 1.0, 0.0]
+ displacementduneVTKLUT.NanOpacity = 1.0
+ displacementduneVTKLUT.Discretize = 1
+ displacementduneVTKLUT.NumberOfTableValues = 256
+ displacementduneVTKLUT.ScalarRangeInitialized = 1.0
+ displacementduneVTKLUT.HSVWrap = 0
+ displacementduneVTKLUT.VectorComponent = 0
+ displacementduneVTKLUT.VectorMode = 'Magnitude'
+ displacementduneVTKLUT.AllowDuplicateScalars = 1
+ displacementduneVTKLUT.Annotations = []
+ displacementduneVTKLUT.ActiveAnnotatedValues = []
+ displacementduneVTKLUT.IndexedColors = []
+ displacementduneVTKLUT.IndexedOpacities = []
+
+ # get opacity transfer function/opacity map for 'DisplacementduneVTK'
+ displacementduneVTKPWF = GetOpacityTransferFunction('DisplacementduneVTK')
+ displacementduneVTKPWF.Points = [0.0, 0.0, 0.5, 0.0, 1.3513808010835127, 1.0, 0.5, 0.0]
+ displacementduneVTKPWF.AllowDuplicateScalars = 1
+ displacementduneVTKPWF.UseLogScale = 0
+ displacementduneVTKPWF.ScalarRangeInitialized = 1
+
+ # create a new 'Warp By Vector'
+ warpByVector1 = WarpByVector(registrationName='WarpByVector1', Input=cylindrical_2variableBC_delta15_level3_NCvtu)
+ warpByVector1.Vectors = ['POINTS', 'Displacement dune-VTK']
+ warpByVector1.ScaleFactor = 1.0
+
+ # show data in view
+ warpByVector1Display = Show(warpByVector1, renderView1, 'UnstructuredGridRepresentation')
+
+ # trace defaults for the display properties.
+ warpByVector1Display.Selection = None
+ warpByVector1Display.Representation = 'Surface'
+ warpByVector1Display.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+ warpByVector1Display.LookupTable = isometryErrorFunctionLUT
+ warpByVector1Display.MapScalars = 1
+ warpByVector1Display.MultiComponentsMapping = 0
+ warpByVector1Display.InterpolateScalarsBeforeMapping = 1
+ warpByVector1Display.Opacity = 1.0
+ warpByVector1Display.PointSize = 2.0
+ warpByVector1Display.LineWidth = 1.0
+ warpByVector1Display.RenderLinesAsTubes = 0
+ warpByVector1Display.RenderPointsAsSpheres = 0
+ warpByVector1Display.Interpolation = 'Gouraud'
+ warpByVector1Display.Specular = 0.0
+ warpByVector1Display.SpecularColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.SpecularPower = 100.0
+ warpByVector1Display.Luminosity = 0.0
+ warpByVector1Display.Ambient = 0.0
+ warpByVector1Display.Diffuse = 1.0
+ warpByVector1Display.Roughness = 0.3
+ warpByVector1Display.Metallic = 0.0
+ warpByVector1Display.EdgeTint = [1.0, 1.0, 1.0]
+ warpByVector1Display.Anisotropy = 0.0
+ warpByVector1Display.AnisotropyRotation = 0.0
+ warpByVector1Display.BaseIOR = 1.5
+ warpByVector1Display.CoatStrength = 0.0
+ warpByVector1Display.CoatIOR = 2.0
+ warpByVector1Display.CoatRoughness = 0.0
+ warpByVector1Display.CoatColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.SelectTCoordArray = 'None'
+ warpByVector1Display.SelectNormalArray = 'None'
+ warpByVector1Display.SelectTangentArray = 'None'
+ warpByVector1Display.Texture = None
+ warpByVector1Display.RepeatTextures = 1
+ warpByVector1Display.InterpolateTextures = 0
+ warpByVector1Display.SeamlessU = 0
+ warpByVector1Display.SeamlessV = 0
+ warpByVector1Display.UseMipmapTextures = 0
+ warpByVector1Display.ShowTexturesOnBackface = 1
+ warpByVector1Display.BaseColorTexture = None
+ warpByVector1Display.NormalTexture = None
+ warpByVector1Display.NormalScale = 1.0
+ warpByVector1Display.CoatNormalTexture = None
+ warpByVector1Display.CoatNormalScale = 1.0
+ warpByVector1Display.MaterialTexture = None
+ warpByVector1Display.OcclusionStrength = 1.0
+ warpByVector1Display.AnisotropyTexture = None
+ warpByVector1Display.EmissiveTexture = None
+ warpByVector1Display.EmissiveFactor = [1.0, 1.0, 1.0]
+ warpByVector1Display.FlipTextures = 0
+ warpByVector1Display.BackfaceRepresentation = 'Follow Frontface'
+ warpByVector1Display.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.BackfaceOpacity = 1.0
+ warpByVector1Display.Position = [0.0, 0.0, 0.0]
+ warpByVector1Display.Scale = [1.0, 1.0, 1.0]
+ warpByVector1Display.Orientation = [0.0, 0.0, 0.0]
+ warpByVector1Display.Origin = [0.0, 0.0, 0.0]
+ warpByVector1Display.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+ warpByVector1Display.Pickable = 1
+ warpByVector1Display.Triangulate = 0
+ warpByVector1Display.UseShaderReplacements = 0
+ warpByVector1Display.ShaderReplacements = ''
+ warpByVector1Display.NonlinearSubdivisionLevel = 1
+ warpByVector1Display.UseDataPartitions = 0
+ warpByVector1Display.OSPRayUseScaleArray = 'All Approximate'
+ warpByVector1Display.OSPRayScaleArray = 'IsometryErrorFunction'
+ warpByVector1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+ warpByVector1Display.OSPRayMaterial = 'None'
+ warpByVector1Display.BlockSelectors = ['/']
+ warpByVector1Display.BlockColors = []
+ warpByVector1Display.BlockOpacities = []
+ warpByVector1Display.Orient = 0
+ warpByVector1Display.OrientationMode = 'Direction'
+ warpByVector1Display.SelectOrientationVectors = 'Displacement dune-VTK'
+ warpByVector1Display.Scaling = 0
+ warpByVector1Display.ScaleMode = 'No Data Scaling Off'
+ warpByVector1Display.ScaleFactor = 0.19999914765357973
+ warpByVector1Display.SelectScaleArray = 'IsometryErrorFunction'
+ warpByVector1Display.GlyphType = 'Arrow'
+ warpByVector1Display.UseGlyphTable = 0
+ warpByVector1Display.GlyphTableIndexArray = 'IsometryErrorFunction'
+ warpByVector1Display.UseCompositeGlyphTable = 0
+ warpByVector1Display.UseGlyphCullingAndLOD = 0
+ warpByVector1Display.LODValues = []
+ warpByVector1Display.ColorByLODIndex = 0
+ warpByVector1Display.GaussianRadius = 0.009999957382678986
+ warpByVector1Display.ShaderPreset = 'Sphere'
+ warpByVector1Display.CustomTriangleScale = 3
+ warpByVector1Display.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+ """
+ warpByVector1Display.Emissive = 0
+ warpByVector1Display.ScaleByArray = 0
+ warpByVector1Display.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+ warpByVector1Display.ScaleArrayComponent = ''
+ warpByVector1Display.UseScaleFunction = 1
+ warpByVector1Display.ScaleTransferFunction = 'PiecewiseFunction'
+ warpByVector1Display.OpacityByArray = 0
+ warpByVector1Display.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+ warpByVector1Display.OpacityArrayComponent = ''
+ warpByVector1Display.OpacityTransferFunction = 'PiecewiseFunction'
+ warpByVector1Display.DataAxesGrid = 'GridAxesRepresentation'
+ warpByVector1Display.SelectionCellLabelBold = 0
+ warpByVector1Display.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+ warpByVector1Display.SelectionCellLabelFontFamily = 'Arial'
+ warpByVector1Display.SelectionCellLabelFontFile = ''
+ warpByVector1Display.SelectionCellLabelFontSize = 18
+ warpByVector1Display.SelectionCellLabelItalic = 0
+ warpByVector1Display.SelectionCellLabelJustification = 'Left'
+ warpByVector1Display.SelectionCellLabelOpacity = 1.0
+ warpByVector1Display.SelectionCellLabelShadow = 0
+ warpByVector1Display.SelectionPointLabelBold = 0
+ warpByVector1Display.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+ warpByVector1Display.SelectionPointLabelFontFamily = 'Arial'
+ warpByVector1Display.SelectionPointLabelFontFile = ''
+ warpByVector1Display.SelectionPointLabelFontSize = 18
+ warpByVector1Display.SelectionPointLabelItalic = 0
+ warpByVector1Display.SelectionPointLabelJustification = 'Left'
+ warpByVector1Display.SelectionPointLabelOpacity = 1.0
+ warpByVector1Display.SelectionPointLabelShadow = 0
+ warpByVector1Display.PolarAxes = 'PolarAxesRepresentation'
+ warpByVector1Display.ScalarOpacityFunction = isometryErrorFunctionPWF
+ warpByVector1Display.ScalarOpacityUnitDistance = 0.21902417179491238
+ warpByVector1Display.UseSeparateOpacityArray = 0
+ warpByVector1Display.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+ warpByVector1Display.OpacityComponent = ''
+ warpByVector1Display.SelectMapper = 'Projected tetra'
+ warpByVector1Display.SamplingDimensions = [128, 128, 128]
+ warpByVector1Display.UseFloatingPointFrameBuffer = 1
+ warpByVector1Display.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+ warpByVector1Display.NumberOfSteps = 40
+ warpByVector1Display.StepSize = 0.25
+ warpByVector1Display.NormalizeVectors = 1
+ warpByVector1Display.EnhancedLIC = 1
+ warpByVector1Display.ColorMode = 'Blend'
+ warpByVector1Display.LICIntensity = 0.8
+ warpByVector1Display.MapModeBias = 0.0
+ warpByVector1Display.EnhanceContrast = 'Off'
+ warpByVector1Display.LowLICContrastEnhancementFactor = 0.0
+ warpByVector1Display.HighLICContrastEnhancementFactor = 0.0
+ warpByVector1Display.LowColorContrastEnhancementFactor = 0.0
+ warpByVector1Display.HighColorContrastEnhancementFactor = 0.0
+ warpByVector1Display.AntiAlias = 0
+ warpByVector1Display.MaskOnSurface = 1
+ warpByVector1Display.MaskThreshold = 0.0
+ warpByVector1Display.MaskIntensity = 0.0
+ warpByVector1Display.MaskColor = [0.5, 0.5, 0.5]
+ warpByVector1Display.GenerateNoiseTexture = 0
+ warpByVector1Display.NoiseType = 'Gaussian'
+ warpByVector1Display.NoiseTextureSize = 128
+ warpByVector1Display.NoiseGrainSize = 2
+ warpByVector1Display.MinNoiseValue = 0.0
+ warpByVector1Display.MaxNoiseValue = 0.8
+ warpByVector1Display.NumberOfNoiseLevels = 1024
+ warpByVector1Display.ImpulseNoiseProbability = 1.0
+ warpByVector1Display.ImpulseNoiseBackgroundValue = 0.0
+ warpByVector1Display.NoiseGeneratorSeed = 1
+ warpByVector1Display.CompositeStrategy = 'AUTO'
+ warpByVector1Display.UseLICForLOD = 0
+ warpByVector1Display.WriteLog = ''
+
+ # init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+ warpByVector1Display.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+ warpByVector1Display.OSPRayScaleFunction.UseLogScale = 0
+
+ # init the 'Arrow' selected for 'GlyphType'
+ warpByVector1Display.GlyphType.TipResolution = 6
+ warpByVector1Display.GlyphType.TipRadius = 0.1
+ warpByVector1Display.GlyphType.TipLength = 0.35
+ warpByVector1Display.GlyphType.ShaftResolution = 6
+ warpByVector1Display.GlyphType.ShaftRadius = 0.03
+ warpByVector1Display.GlyphType.Invert = 0
+
+ # init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+ warpByVector1Display.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ warpByVector1Display.ScaleTransferFunction.UseLogScale = 0
+
+ # init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+ warpByVector1Display.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ warpByVector1Display.OpacityTransferFunction.UseLogScale = 0
+
+ # init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+ warpByVector1Display.DataAxesGrid.XTitle = 'X Axis'
+ warpByVector1Display.DataAxesGrid.YTitle = 'Y Axis'
+ warpByVector1Display.DataAxesGrid.ZTitle = 'Z Axis'
+ warpByVector1Display.DataAxesGrid.XTitleFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.XTitleFontFile = ''
+ warpByVector1Display.DataAxesGrid.XTitleBold = 0
+ warpByVector1Display.DataAxesGrid.XTitleItalic = 0
+ warpByVector1Display.DataAxesGrid.XTitleFontSize = 12
+ warpByVector1Display.DataAxesGrid.XTitleShadow = 0
+ warpByVector1Display.DataAxesGrid.XTitleOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.YTitleFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.YTitleFontFile = ''
+ warpByVector1Display.DataAxesGrid.YTitleBold = 0
+ warpByVector1Display.DataAxesGrid.YTitleItalic = 0
+ warpByVector1Display.DataAxesGrid.YTitleFontSize = 12
+ warpByVector1Display.DataAxesGrid.YTitleShadow = 0
+ warpByVector1Display.DataAxesGrid.YTitleOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.ZTitleFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.ZTitleFontFile = ''
+ warpByVector1Display.DataAxesGrid.ZTitleBold = 0
+ warpByVector1Display.DataAxesGrid.ZTitleItalic = 0
+ warpByVector1Display.DataAxesGrid.ZTitleFontSize = 12
+ warpByVector1Display.DataAxesGrid.ZTitleShadow = 0
+ warpByVector1Display.DataAxesGrid.ZTitleOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.FacesToRender = 63
+ warpByVector1Display.DataAxesGrid.CullBackface = 0
+ warpByVector1Display.DataAxesGrid.CullFrontface = 1
+ warpByVector1Display.DataAxesGrid.ShowGrid = 0
+ warpByVector1Display.DataAxesGrid.ShowEdges = 1
+ warpByVector1Display.DataAxesGrid.ShowTicks = 1
+ warpByVector1Display.DataAxesGrid.LabelUniqueEdgesOnly = 1
+ warpByVector1Display.DataAxesGrid.AxesToLabel = 63
+ warpByVector1Display.DataAxesGrid.XLabelFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.XLabelFontFile = ''
+ warpByVector1Display.DataAxesGrid.XLabelBold = 0
+ warpByVector1Display.DataAxesGrid.XLabelItalic = 0
+ warpByVector1Display.DataAxesGrid.XLabelFontSize = 12
+ warpByVector1Display.DataAxesGrid.XLabelShadow = 0
+ warpByVector1Display.DataAxesGrid.XLabelOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.YLabelFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.YLabelFontFile = ''
+ warpByVector1Display.DataAxesGrid.YLabelBold = 0
+ warpByVector1Display.DataAxesGrid.YLabelItalic = 0
+ warpByVector1Display.DataAxesGrid.YLabelFontSize = 12
+ warpByVector1Display.DataAxesGrid.YLabelShadow = 0
+ warpByVector1Display.DataAxesGrid.YLabelOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.ZLabelFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.ZLabelFontFile = ''
+ warpByVector1Display.DataAxesGrid.ZLabelBold = 0
+ warpByVector1Display.DataAxesGrid.ZLabelItalic = 0
+ warpByVector1Display.DataAxesGrid.ZLabelFontSize = 12
+ warpByVector1Display.DataAxesGrid.ZLabelShadow = 0
+ warpByVector1Display.DataAxesGrid.ZLabelOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.XAxisNotation = 'Mixed'
+ warpByVector1Display.DataAxesGrid.XAxisPrecision = 2
+ warpByVector1Display.DataAxesGrid.XAxisUseCustomLabels = 0
+ warpByVector1Display.DataAxesGrid.XAxisLabels = []
+ warpByVector1Display.DataAxesGrid.YAxisNotation = 'Mixed'
+ warpByVector1Display.DataAxesGrid.YAxisPrecision = 2
+ warpByVector1Display.DataAxesGrid.YAxisUseCustomLabels = 0
+ warpByVector1Display.DataAxesGrid.YAxisLabels = []
+ warpByVector1Display.DataAxesGrid.ZAxisNotation = 'Mixed'
+ warpByVector1Display.DataAxesGrid.ZAxisPrecision = 2
+ warpByVector1Display.DataAxesGrid.ZAxisUseCustomLabels = 0
+ warpByVector1Display.DataAxesGrid.ZAxisLabels = []
+ warpByVector1Display.DataAxesGrid.UseCustomBounds = 0
+ warpByVector1Display.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+ # init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+ warpByVector1Display.PolarAxes.Visibility = 0
+ warpByVector1Display.PolarAxes.Translation = [0.0, 0.0, 0.0]
+ warpByVector1Display.PolarAxes.Scale = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+ warpByVector1Display.PolarAxes.EnableCustomBounds = [0, 0, 0]
+ warpByVector1Display.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+ warpByVector1Display.PolarAxes.EnableCustomRange = 0
+ warpByVector1Display.PolarAxes.CustomRange = [0.0, 1.0]
+ warpByVector1Display.PolarAxes.PolarAxisVisibility = 1
+ warpByVector1Display.PolarAxes.RadialAxesVisibility = 1
+ warpByVector1Display.PolarAxes.DrawRadialGridlines = 1
+ warpByVector1Display.PolarAxes.PolarArcsVisibility = 1
+ warpByVector1Display.PolarAxes.DrawPolarArcsGridlines = 1
+ warpByVector1Display.PolarAxes.NumberOfRadialAxes = 0
+ warpByVector1Display.PolarAxes.AutoSubdividePolarAxis = 1
+ warpByVector1Display.PolarAxes.NumberOfPolarAxis = 0
+ warpByVector1Display.PolarAxes.MinimumRadius = 0.0
+ warpByVector1Display.PolarAxes.MinimumAngle = 0.0
+ warpByVector1Display.PolarAxes.MaximumAngle = 90.0
+ warpByVector1Display.PolarAxes.RadialAxesOriginToPolarAxis = 1
+ warpByVector1Display.PolarAxes.Ratio = 1.0
+ warpByVector1Display.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.PolarAxisTitleVisibility = 1
+ warpByVector1Display.PolarAxes.PolarAxisTitle = 'Radial Distance'
+ warpByVector1Display.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+ warpByVector1Display.PolarAxes.PolarLabelVisibility = 1
+ warpByVector1Display.PolarAxes.PolarLabelFormat = '%-#6.3g'
+ warpByVector1Display.PolarAxes.PolarLabelExponentLocation = 'Labels'
+ warpByVector1Display.PolarAxes.RadialLabelVisibility = 1
+ warpByVector1Display.PolarAxes.RadialLabelFormat = '%-#3.1f'
+ warpByVector1Display.PolarAxes.RadialLabelLocation = 'Bottom'
+ warpByVector1Display.PolarAxes.RadialUnitsVisibility = 1
+ warpByVector1Display.PolarAxes.ScreenSize = 10.0
+ warpByVector1Display.PolarAxes.PolarAxisTitleOpacity = 1.0
+ warpByVector1Display.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+ warpByVector1Display.PolarAxes.PolarAxisTitleFontFile = ''
+ warpByVector1Display.PolarAxes.PolarAxisTitleBold = 0
+ warpByVector1Display.PolarAxes.PolarAxisTitleItalic = 0
+ warpByVector1Display.PolarAxes.PolarAxisTitleShadow = 0
+ warpByVector1Display.PolarAxes.PolarAxisTitleFontSize = 12
+ warpByVector1Display.PolarAxes.PolarAxisLabelOpacity = 1.0
+ warpByVector1Display.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+ warpByVector1Display.PolarAxes.PolarAxisLabelFontFile = ''
+ warpByVector1Display.PolarAxes.PolarAxisLabelBold = 0
+ warpByVector1Display.PolarAxes.PolarAxisLabelItalic = 0
+ warpByVector1Display.PolarAxes.PolarAxisLabelShadow = 0
+ warpByVector1Display.PolarAxes.PolarAxisLabelFontSize = 12
+ warpByVector1Display.PolarAxes.LastRadialAxisTextOpacity = 1.0
+ warpByVector1Display.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+ warpByVector1Display.PolarAxes.LastRadialAxisTextFontFile = ''
+ warpByVector1Display.PolarAxes.LastRadialAxisTextBold = 0
+ warpByVector1Display.PolarAxes.LastRadialAxisTextItalic = 0
+ warpByVector1Display.PolarAxes.LastRadialAxisTextShadow = 0
+ warpByVector1Display.PolarAxes.LastRadialAxisTextFontSize = 12
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextBold = 0
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextItalic = 0
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextShadow = 0
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+ warpByVector1Display.PolarAxes.EnableDistanceLOD = 1
+ warpByVector1Display.PolarAxes.DistanceLODThreshold = 0.7
+ warpByVector1Display.PolarAxes.EnableViewAngleLOD = 1
+ warpByVector1Display.PolarAxes.ViewAngleLODThreshold = 0.7
+ warpByVector1Display.PolarAxes.SmallestVisiblePolarAngle = 0.5
+ warpByVector1Display.PolarAxes.PolarTicksVisibility = 1
+ warpByVector1Display.PolarAxes.ArcTicksOriginToPolarAxis = 1
+ warpByVector1Display.PolarAxes.TickLocation = 'Both'
+ warpByVector1Display.PolarAxes.AxisTickVisibility = 1
+ warpByVector1Display.PolarAxes.AxisMinorTickVisibility = 0
+ warpByVector1Display.PolarAxes.ArcTickVisibility = 1
+ warpByVector1Display.PolarAxes.ArcMinorTickVisibility = 0
+ warpByVector1Display.PolarAxes.DeltaAngleMajor = 10.0
+ warpByVector1Display.PolarAxes.DeltaAngleMinor = 5.0
+ warpByVector1Display.PolarAxes.PolarAxisMajorTickSize = 0.0
+ warpByVector1Display.PolarAxes.PolarAxisTickRatioSize = 0.3
+ warpByVector1Display.PolarAxes.PolarAxisMajorTickThickness = 1.0
+ warpByVector1Display.PolarAxes.PolarAxisTickRatioThickness = 0.5
+ warpByVector1Display.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+ warpByVector1Display.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+ warpByVector1Display.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+ warpByVector1Display.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+ warpByVector1Display.PolarAxes.ArcMajorTickSize = 0.0
+ warpByVector1Display.PolarAxes.ArcTickRatioSize = 0.3
+ warpByVector1Display.PolarAxes.ArcMajorTickThickness = 1.0
+ warpByVector1Display.PolarAxes.ArcTickRatioThickness = 0.5
+ warpByVector1Display.PolarAxes.Use2DMode = 0
+ warpByVector1Display.PolarAxes.UseLogAxis = 0
+
+ # hide data in view
+ Hide(cylindrical_2variableBC_delta15_level3_NCvtu, renderView1)
+
+ # show color bar/color legend
+ warpByVector1Display.SetScalarBarVisibility(renderView1, True)
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # set scalar coloring
+ ColorBy(warpByVector1Display, ('POINTS', 'Displacement dune-VTK', 'Magnitude'))
+
+ # Hide the scalar bar for this color map if no visible data is colored by it.
+ HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+ # rescale color and/or opacity maps used to include current data range
+ warpByVector1Display.RescaleTransferFunctionToDataRange(True, False)
+
+ # show color bar/color legend
+ warpByVector1Display.SetScalarBarVisibility(renderView1, True)
+
+ # Apply a preset using its name. Note this may not work as expected when presets have duplicate names.
+ displacementduneVTKLUT.ApplyPreset('Greens', True)
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.00013513808010835127, 1.3513808010835127)
+
+ # Rescale transfer function
+ displacementduneVTKPWF.RescaleTransferFunction(0.00013513808010835127, 1.3513808010835127)
+
+ # convert to log space
+ displacementduneVTKLUT.MapControlPointsToLogSpace()
+
+ # Properties modified on displacementduneVTKLUT
+ displacementduneVTKLUT.UseLogScale = 1
+
+ # hide color bar/color legend
+ warpByVector1Display.SetScalarBarVisibility(renderView1, False)
+
+ # reset view to fit data bounds
+ renderView1.ResetCamera(-1.0, 0.48625946044921875, -0.9997166991233826, 1.0002747774124146, -0.03165162727236748, 1.2042447328567505, True)
+
+ # Properties modified on renderView1
+ renderView1.OrientationAxesVisibility = 0
+
+ # Properties modified on warpByVector1Display
+ warpByVector1Display.Specular = 0.0
+
+ # Properties modified on warpByVector1Display
+ warpByVector1Display.Interpolation = 'Flat'
+
+ # set active source
+ SetActiveSource(cylindrical_2variableBC_delta15_level3_NCvtu)
+
+ # Properties modified on cylindrical_2variableBC_delta15_level3_NCvtuDisplay
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Specular = 0.0
+
+ # set active source
+ SetActiveSource(warpByVector1)
+
+ # Properties modified on warpByVector1Display
+ warpByVector1Display.Ambient = 0.2
+
+ # Properties modified on warpByVector1Display
+ warpByVector1Display.NonlinearSubdivisionLevel = 4
+
+ if AddGlyph:
+ # create a new 'Glyph'
+ glyph1 = Glyph(registrationName='Glyph1', Input=warpByVector1,
+ GlyphType='Arrow')
+ glyph1.OrientationArray = ['POINTS', 'Displacement dune-VTK']
+ glyph1.ScaleArray = ['POINTS', 'IsometryErrorFunction']
+ glyph1.VectorScaleMode = 'Scale by Magnitude'
+ glyph1.ScaleFactor = 0.19999914765357973
+ glyph1.GlyphTransform = 'Transform2'
+ glyph1.GlyphMode = 'Uniform Spatial Distribution (Bounds Based)'
+ glyph1.MaximumNumberOfSamplePoints = 5000
+ glyph1.Seed = 10339
+ glyph1.Stride = 1
+
+ # init the 'Arrow' selected for 'GlyphType'
+ glyph1.GlyphType.TipResolution = 30
+ glyph1.GlyphType.TipRadius = 0.075
+ glyph1.GlyphType.TipLength = 0.35
+ glyph1.GlyphType.ShaftResolution = 30
+ glyph1.GlyphType.ShaftRadius = 0.015
+ glyph1.GlyphType.Invert = 0
+
+ # init the 'Transform2' selected for 'GlyphTransform'
+ glyph1.GlyphTransform.Translate = [0.0, 0.0, 0.0]
+ glyph1.GlyphTransform.Rotate = [0.0, 0.0, 0.0]
+ glyph1.GlyphTransform.Scale = [1.0, 1.0, 1.0]
+
+ # Properties modified on glyph1
+ glyph1.OrientationArray = ['POINTS', 'SurfaceNormalDiscrete']
+ glyph1.ScaleArray = ['POINTS', 'No scale array']
+ # glyph1.ScaleFactor = 0.1
+ glyph1.ScaleFactor = 0.15
+ glyph1.GlyphMode = 'Every Nth Point'
+ glyph1.Stride = 35
+
+ # show data in view
+ glyph1Display = Show(glyph1, renderView1, 'GeometryRepresentation')
+
+ # trace defaults for the display properties.
+ glyph1Display.Selection = None
+ glyph1Display.Representation = 'Surface'
+ glyph1Display.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+ glyph1Display.LookupTable = isometryErrorFunctionLUT
+ glyph1Display.MapScalars = 1
+ glyph1Display.MultiComponentsMapping = 0
+ glyph1Display.InterpolateScalarsBeforeMapping = 1
+ glyph1Display.Opacity = 1.0
+ glyph1Display.PointSize = 2.0
+ glyph1Display.LineWidth = 1.0
+ glyph1Display.RenderLinesAsTubes = 0
+ glyph1Display.RenderPointsAsSpheres = 0
+ glyph1Display.Interpolation = 'Gouraud'
+ glyph1Display.Specular = 0.0
+ glyph1Display.SpecularColor = [1.0, 1.0, 1.0]
+ glyph1Display.SpecularPower = 100.0
+ glyph1Display.Luminosity = 0.0
+ glyph1Display.Ambient = 0.0
+ glyph1Display.Diffuse = 1.0
+ glyph1Display.Roughness = 0.3
+ glyph1Display.Metallic = 0.0
+ glyph1Display.EdgeTint = [1.0, 1.0, 1.0]
+ glyph1Display.Anisotropy = 0.0
+ glyph1Display.AnisotropyRotation = 0.0
+ glyph1Display.BaseIOR = 1.5
+ glyph1Display.CoatStrength = 0.0
+ glyph1Display.CoatIOR = 2.0
+ glyph1Display.CoatRoughness = 0.0
+ glyph1Display.CoatColor = [1.0, 1.0, 1.0]
+ glyph1Display.SelectTCoordArray = 'None'
+ glyph1Display.SelectNormalArray = 'None'
+ glyph1Display.SelectTangentArray = 'None'
+ glyph1Display.Texture = None
+ glyph1Display.RepeatTextures = 1
+ glyph1Display.InterpolateTextures = 0
+ glyph1Display.SeamlessU = 0
+ glyph1Display.SeamlessV = 0
+ glyph1Display.UseMipmapTextures = 0
+ glyph1Display.ShowTexturesOnBackface = 1
+ glyph1Display.BaseColorTexture = None
+ glyph1Display.NormalTexture = None
+ glyph1Display.NormalScale = 1.0
+ glyph1Display.CoatNormalTexture = None
+ glyph1Display.CoatNormalScale = 1.0
+ glyph1Display.MaterialTexture = None
+ glyph1Display.OcclusionStrength = 1.0
+ glyph1Display.AnisotropyTexture = None
+ glyph1Display.EmissiveTexture = None
+ glyph1Display.EmissiveFactor = [1.0, 1.0, 1.0]
+ glyph1Display.FlipTextures = 0
+ glyph1Display.BackfaceRepresentation = 'Follow Frontface'
+ glyph1Display.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+ glyph1Display.BackfaceOpacity = 1.0
+ glyph1Display.Position = [0.0, 0.0, 0.0]
+ glyph1Display.Scale = [1.0, 1.0, 1.0]
+ glyph1Display.Orientation = [0.0, 0.0, 0.0]
+ glyph1Display.Origin = [0.0, 0.0, 0.0]
+ glyph1Display.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+ glyph1Display.Pickable = 1
+ glyph1Display.Triangulate = 0
+ glyph1Display.UseShaderReplacements = 0
+ glyph1Display.ShaderReplacements = ''
+ glyph1Display.NonlinearSubdivisionLevel = 1
+ glyph1Display.UseDataPartitions = 0
+ glyph1Display.OSPRayUseScaleArray = 'All Approximate'
+ glyph1Display.OSPRayScaleArray = 'IsometryErrorFunction'
+ glyph1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+ glyph1Display.OSPRayMaterial = 'None'
+ glyph1Display.BlockSelectors = ['/']
+ glyph1Display.BlockColors = []
+ glyph1Display.BlockOpacities = []
+ glyph1Display.Orient = 0
+ glyph1Display.OrientationMode = 'Direction'
+ glyph1Display.SelectOrientationVectors = 'Displacement dune-VTK'
+ glyph1Display.Scaling = 0
+ glyph1Display.ScaleMode = 'No Data Scaling Off'
+ glyph1Display.ScaleFactor = 0.205192768573761
+ glyph1Display.SelectScaleArray = 'IsometryErrorFunction'
+ glyph1Display.GlyphType = 'Arrow'
+ glyph1Display.UseGlyphTable = 0
+ glyph1Display.GlyphTableIndexArray = 'IsometryErrorFunction'
+ glyph1Display.UseCompositeGlyphTable = 0
+ glyph1Display.UseGlyphCullingAndLOD = 0
+ glyph1Display.LODValues = []
+ glyph1Display.ColorByLODIndex = 0
+ glyph1Display.GaussianRadius = 0.01025963842868805
+ glyph1Display.ShaderPreset = 'Sphere'
+ glyph1Display.CustomTriangleScale = 3
+ glyph1Display.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+ """
+ glyph1Display.Emissive = 0
+ glyph1Display.ScaleByArray = 0
+ glyph1Display.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+ glyph1Display.ScaleArrayComponent = ''
+ glyph1Display.UseScaleFunction = 1
+ glyph1Display.ScaleTransferFunction = 'PiecewiseFunction'
+ glyph1Display.OpacityByArray = 0
+ glyph1Display.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+ glyph1Display.OpacityArrayComponent = ''
+ glyph1Display.OpacityTransferFunction = 'PiecewiseFunction'
+ glyph1Display.DataAxesGrid = 'GridAxesRepresentation'
+ glyph1Display.SelectionCellLabelBold = 0
+ glyph1Display.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+ glyph1Display.SelectionCellLabelFontFamily = 'Arial'
+ glyph1Display.SelectionCellLabelFontFile = ''
+ glyph1Display.SelectionCellLabelFontSize = 18
+ glyph1Display.SelectionCellLabelItalic = 0
+ glyph1Display.SelectionCellLabelJustification = 'Left'
+ glyph1Display.SelectionCellLabelOpacity = 1.0
+ glyph1Display.SelectionCellLabelShadow = 0
+ glyph1Display.SelectionPointLabelBold = 0
+ glyph1Display.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+ glyph1Display.SelectionPointLabelFontFamily = 'Arial'
+ glyph1Display.SelectionPointLabelFontFile = ''
+ glyph1Display.SelectionPointLabelFontSize = 18
+ glyph1Display.SelectionPointLabelItalic = 0
+ glyph1Display.SelectionPointLabelJustification = 'Left'
+ glyph1Display.SelectionPointLabelOpacity = 1.0
+ glyph1Display.SelectionPointLabelShadow = 0
+ glyph1Display.PolarAxes = 'PolarAxesRepresentation'
+ glyph1Display.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+ glyph1Display.NumberOfSteps = 40
+ glyph1Display.StepSize = 0.25
+ glyph1Display.NormalizeVectors = 1
+ glyph1Display.EnhancedLIC = 1
+ glyph1Display.ColorMode = 'Blend'
+ glyph1Display.LICIntensity = 0.8
+ glyph1Display.MapModeBias = 0.0
+ glyph1Display.EnhanceContrast = 'Off'
+ glyph1Display.LowLICContrastEnhancementFactor = 0.0
+ glyph1Display.HighLICContrastEnhancementFactor = 0.0
+ glyph1Display.LowColorContrastEnhancementFactor = 0.0
+ glyph1Display.HighColorContrastEnhancementFactor = 0.0
+ glyph1Display.AntiAlias = 0
+ glyph1Display.MaskOnSurface = 1
+ glyph1Display.MaskThreshold = 0.0
+ glyph1Display.MaskIntensity = 0.0
+ glyph1Display.MaskColor = [0.5, 0.5, 0.5]
+ glyph1Display.GenerateNoiseTexture = 0
+ glyph1Display.NoiseType = 'Gaussian'
+ glyph1Display.NoiseTextureSize = 128
+ glyph1Display.NoiseGrainSize = 2
+ glyph1Display.MinNoiseValue = 0.0
+ glyph1Display.MaxNoiseValue = 0.8
+ glyph1Display.NumberOfNoiseLevels = 1024
+ glyph1Display.ImpulseNoiseProbability = 1.0
+ glyph1Display.ImpulseNoiseBackgroundValue = 0.0
+ glyph1Display.NoiseGeneratorSeed = 1
+ glyph1Display.CompositeStrategy = 'AUTO'
+ glyph1Display.UseLICForLOD = 0
+ glyph1Display.WriteLog = ''
+
+ # init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+ glyph1Display.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+ glyph1Display.OSPRayScaleFunction.UseLogScale = 0
+
+ # init the 'Arrow' selected for 'GlyphType'
+ glyph1Display.GlyphType.TipResolution = 30
+ glyph1Display.GlyphType.TipRadius = 0.075
+ glyph1Display.GlyphType.TipLength = 0.35
+ glyph1Display.GlyphType.ShaftResolution = 30
+ glyph1Display.GlyphType.ShaftRadius = 0.015
+ glyph1Display.GlyphType.Invert = 0
+
+ # init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+ glyph1Display.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.0557803250849247, 1.0, 0.5, 0.0]
+ glyph1Display.ScaleTransferFunction.UseLogScale = 0
+
+ # init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+ glyph1Display.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.0557803250849247, 1.0, 0.5, 0.0]
+ glyph1Display.OpacityTransferFunction.UseLogScale = 0
+
+ # init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+ glyph1Display.DataAxesGrid.XTitle = 'X Axis'
+ glyph1Display.DataAxesGrid.YTitle = 'Y Axis'
+ glyph1Display.DataAxesGrid.ZTitle = 'Z Axis'
+ glyph1Display.DataAxesGrid.XTitleFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.XTitleFontFile = ''
+ glyph1Display.DataAxesGrid.XTitleBold = 0
+ glyph1Display.DataAxesGrid.XTitleItalic = 0
+ glyph1Display.DataAxesGrid.XTitleFontSize = 12
+ glyph1Display.DataAxesGrid.XTitleShadow = 0
+ glyph1Display.DataAxesGrid.XTitleOpacity = 1.0
+ glyph1Display.DataAxesGrid.YTitleFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.YTitleFontFile = ''
+ glyph1Display.DataAxesGrid.YTitleBold = 0
+ glyph1Display.DataAxesGrid.YTitleItalic = 0
+ glyph1Display.DataAxesGrid.YTitleFontSize = 12
+ glyph1Display.DataAxesGrid.YTitleShadow = 0
+ glyph1Display.DataAxesGrid.YTitleOpacity = 1.0
+ glyph1Display.DataAxesGrid.ZTitleFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.ZTitleFontFile = ''
+ glyph1Display.DataAxesGrid.ZTitleBold = 0
+ glyph1Display.DataAxesGrid.ZTitleItalic = 0
+ glyph1Display.DataAxesGrid.ZTitleFontSize = 12
+ glyph1Display.DataAxesGrid.ZTitleShadow = 0
+ glyph1Display.DataAxesGrid.ZTitleOpacity = 1.0
+ glyph1Display.DataAxesGrid.FacesToRender = 63
+ glyph1Display.DataAxesGrid.CullBackface = 0
+ glyph1Display.DataAxesGrid.CullFrontface = 1
+ glyph1Display.DataAxesGrid.ShowGrid = 0
+ glyph1Display.DataAxesGrid.ShowEdges = 1
+ glyph1Display.DataAxesGrid.ShowTicks = 1
+ glyph1Display.DataAxesGrid.LabelUniqueEdgesOnly = 1
+ glyph1Display.DataAxesGrid.AxesToLabel = 63
+ glyph1Display.DataAxesGrid.XLabelFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.XLabelFontFile = ''
+ glyph1Display.DataAxesGrid.XLabelBold = 0
+ glyph1Display.DataAxesGrid.XLabelItalic = 0
+ glyph1Display.DataAxesGrid.XLabelFontSize = 12
+ glyph1Display.DataAxesGrid.XLabelShadow = 0
+ glyph1Display.DataAxesGrid.XLabelOpacity = 1.0
+ glyph1Display.DataAxesGrid.YLabelFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.YLabelFontFile = ''
+ glyph1Display.DataAxesGrid.YLabelBold = 0
+ glyph1Display.DataAxesGrid.YLabelItalic = 0
+ glyph1Display.DataAxesGrid.YLabelFontSize = 12
+ glyph1Display.DataAxesGrid.YLabelShadow = 0
+ glyph1Display.DataAxesGrid.YLabelOpacity = 1.0
+ glyph1Display.DataAxesGrid.ZLabelFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.ZLabelFontFile = ''
+ glyph1Display.DataAxesGrid.ZLabelBold = 0
+ glyph1Display.DataAxesGrid.ZLabelItalic = 0
+ glyph1Display.DataAxesGrid.ZLabelFontSize = 12
+ glyph1Display.DataAxesGrid.ZLabelShadow = 0
+ glyph1Display.DataAxesGrid.ZLabelOpacity = 1.0
+ glyph1Display.DataAxesGrid.XAxisNotation = 'Mixed'
+ glyph1Display.DataAxesGrid.XAxisPrecision = 2
+ glyph1Display.DataAxesGrid.XAxisUseCustomLabels = 0
+ glyph1Display.DataAxesGrid.XAxisLabels = []
+ glyph1Display.DataAxesGrid.YAxisNotation = 'Mixed'
+ glyph1Display.DataAxesGrid.YAxisPrecision = 2
+ glyph1Display.DataAxesGrid.YAxisUseCustomLabels = 0
+ glyph1Display.DataAxesGrid.YAxisLabels = []
+ glyph1Display.DataAxesGrid.ZAxisNotation = 'Mixed'
+ glyph1Display.DataAxesGrid.ZAxisPrecision = 2
+ glyph1Display.DataAxesGrid.ZAxisUseCustomLabels = 0
+ glyph1Display.DataAxesGrid.ZAxisLabels = []
+ glyph1Display.DataAxesGrid.UseCustomBounds = 0
+ glyph1Display.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+ # init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+ glyph1Display.PolarAxes.Visibility = 0
+ glyph1Display.PolarAxes.Translation = [0.0, 0.0, 0.0]
+ glyph1Display.PolarAxes.Scale = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+ glyph1Display.PolarAxes.EnableCustomBounds = [0, 0, 0]
+ glyph1Display.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+ glyph1Display.PolarAxes.EnableCustomRange = 0
+ glyph1Display.PolarAxes.CustomRange = [0.0, 1.0]
+ glyph1Display.PolarAxes.PolarAxisVisibility = 1
+ glyph1Display.PolarAxes.RadialAxesVisibility = 1
+ glyph1Display.PolarAxes.DrawRadialGridlines = 1
+ glyph1Display.PolarAxes.PolarArcsVisibility = 1
+ glyph1Display.PolarAxes.DrawPolarArcsGridlines = 1
+ glyph1Display.PolarAxes.NumberOfRadialAxes = 0
+ glyph1Display.PolarAxes.AutoSubdividePolarAxis = 1
+ glyph1Display.PolarAxes.NumberOfPolarAxis = 0
+ glyph1Display.PolarAxes.MinimumRadius = 0.0
+ glyph1Display.PolarAxes.MinimumAngle = 0.0
+ glyph1Display.PolarAxes.MaximumAngle = 90.0
+ glyph1Display.PolarAxes.RadialAxesOriginToPolarAxis = 1
+ glyph1Display.PolarAxes.Ratio = 1.0
+ glyph1Display.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.PolarAxisTitleVisibility = 1
+ glyph1Display.PolarAxes.PolarAxisTitle = 'Radial Distance'
+ glyph1Display.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+ glyph1Display.PolarAxes.PolarLabelVisibility = 1
+ glyph1Display.PolarAxes.PolarLabelFormat = '%-#6.3g'
+ glyph1Display.PolarAxes.PolarLabelExponentLocation = 'Labels'
+ glyph1Display.PolarAxes.RadialLabelVisibility = 1
+ glyph1Display.PolarAxes.RadialLabelFormat = '%-#3.1f'
+ glyph1Display.PolarAxes.RadialLabelLocation = 'Bottom'
+ glyph1Display.PolarAxes.RadialUnitsVisibility = 1
+ glyph1Display.PolarAxes.ScreenSize = 10.0
+ glyph1Display.PolarAxes.PolarAxisTitleOpacity = 1.0
+ glyph1Display.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+ glyph1Display.PolarAxes.PolarAxisTitleFontFile = ''
+ glyph1Display.PolarAxes.PolarAxisTitleBold = 0
+ glyph1Display.PolarAxes.PolarAxisTitleItalic = 0
+ glyph1Display.PolarAxes.PolarAxisTitleShadow = 0
+ glyph1Display.PolarAxes.PolarAxisTitleFontSize = 12
+ glyph1Display.PolarAxes.PolarAxisLabelOpacity = 1.0
+ glyph1Display.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+ glyph1Display.PolarAxes.PolarAxisLabelFontFile = ''
+ glyph1Display.PolarAxes.PolarAxisLabelBold = 0
+ glyph1Display.PolarAxes.PolarAxisLabelItalic = 0
+ glyph1Display.PolarAxes.PolarAxisLabelShadow = 0
+ glyph1Display.PolarAxes.PolarAxisLabelFontSize = 12
+ glyph1Display.PolarAxes.LastRadialAxisTextOpacity = 1.0
+ glyph1Display.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+ glyph1Display.PolarAxes.LastRadialAxisTextFontFile = ''
+ glyph1Display.PolarAxes.LastRadialAxisTextBold = 0
+ glyph1Display.PolarAxes.LastRadialAxisTextItalic = 0
+ glyph1Display.PolarAxes.LastRadialAxisTextShadow = 0
+ glyph1Display.PolarAxes.LastRadialAxisTextFontSize = 12
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextBold = 0
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextItalic = 0
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextShadow = 0
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+ glyph1Display.PolarAxes.EnableDistanceLOD = 1
+ glyph1Display.PolarAxes.DistanceLODThreshold = 0.7
+ glyph1Display.PolarAxes.EnableViewAngleLOD = 1
+ glyph1Display.PolarAxes.ViewAngleLODThreshold = 0.7
+ glyph1Display.PolarAxes.SmallestVisiblePolarAngle = 0.5
+ glyph1Display.PolarAxes.PolarTicksVisibility = 1
+ glyph1Display.PolarAxes.ArcTicksOriginToPolarAxis = 1
+ glyph1Display.PolarAxes.TickLocation = 'Both'
+ glyph1Display.PolarAxes.AxisTickVisibility = 1
+ glyph1Display.PolarAxes.AxisMinorTickVisibility = 0
+ glyph1Display.PolarAxes.ArcTickVisibility = 1
+ glyph1Display.PolarAxes.ArcMinorTickVisibility = 0
+ glyph1Display.PolarAxes.DeltaAngleMajor = 10.0
+ glyph1Display.PolarAxes.DeltaAngleMinor = 5.0
+ glyph1Display.PolarAxes.PolarAxisMajorTickSize = 0.0
+ glyph1Display.PolarAxes.PolarAxisTickRatioSize = 0.3
+ glyph1Display.PolarAxes.PolarAxisMajorTickThickness = 1.0
+ glyph1Display.PolarAxes.PolarAxisTickRatioThickness = 0.5
+ glyph1Display.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+ glyph1Display.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+ glyph1Display.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+ glyph1Display.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+ glyph1Display.PolarAxes.ArcMajorTickSize = 0.0
+ glyph1Display.PolarAxes.ArcTickRatioSize = 0.3
+ glyph1Display.PolarAxes.ArcMajorTickThickness = 1.0
+ glyph1Display.PolarAxes.ArcTickRatioThickness = 0.5
+ glyph1Display.PolarAxes.Use2DMode = 0
+ glyph1Display.PolarAxes.UseLogAxis = 0
+
+ # show color bar/color legend
+ glyph1Display.SetScalarBarVisibility(renderView1, True)
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.0, 1.3513808010835129)
+
+ # Rescale transfer function
+ displacementduneVTKPWF.RescaleTransferFunction(0.0, 1.3513808010835127)
+
+ # Properties modified on glyph1
+ glyph1.Stride = 25
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.0, 1.3513808010835129)
+
+ # Properties modified on glyph1
+ glyph1.Stride = 30
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.0, 1.3513808010835129)
+
+ # Properties modified on glyph1
+ glyph1.Stride = 40
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.0, 1.3513808010835129)
+
+ # turn off scalar coloring
+ ColorBy(glyph1Display, None)
+
+ # Hide the scalar bar for this color map if no visible data is colored by it.
+ HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+ # change solid color (Black)
+ # glyph1Display.AmbientColor = [0.0, 0.0, 0.0]
+ # glyph1Display.DiffuseColor = [0.0, 0.0, 0.0]
+
+ # change solid color (DarkBlue)
+ glyph1Display.AmbientColor = [0.0, 0.3333333333333333, 0.4980392156862745]
+ glyph1Display.DiffuseColor = [0.0, 0.3333333333333333, 0.4980392156862745]
+
+ # Properties modified on glyph1Display
+ glyph1Display.Opacity = 0.25
+
+ # Properties modified on glyph1Display
+ glyph1Display.Specular = 1.0
+
+ # Properties modified on glyph1Display
+ glyph1Display.Specular = 0.0
+
+ # Properties modified on glyph1Display
+ glyph1Display.Ambient = 0.2
+
+ #================================================================
+ # addendum: following script captures some of the application
+ # state to faithfully reproduce the visualization during playback
+ #================================================================
+
+ # get layout
+ layout1 = GetLayout()
+
+ print('layout1:',layout1)
+
+ #--------------------------------
+ # saving layout sizes for layouts
+
+ # layout/tab size in pixels
+ layout1.SetSize(1526, 873)
+
+ #-----------------------------------
+ # saving camera placements for views
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.5317894883522003, -7.950546149218976, 1.8355840818083122]
+ renderView1.CameraFocalPoint = [-0.3373855559365908, -2.646797497088115, 0.9959448222039734]
+ renderView1.CameraViewUp = [-0.0628645081836353, 0.15830147075535642, 0.9853875876869572]
+ renderView1.CameraViewAngle = 25.620465826651394
+ renderView1.CameraParallelScale = 1.3907168028548302
+
+
+
+ #Camera View:
+ # # get active view
+ # renderView1 = GetActiveViewOrCreate('RenderView')
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # # reset view to fit data bounds
+ # renderView1.ResetCamera(-1.0, 1.0257619619369507, -0.9359287619590759, 0.9359057545661926, -0.32227325439453125, 0.3284286856651306, True)
+
+ # # reset view to fit data bounds
+ # renderView1.ResetCamera(-1.0, 1.0257619619369507, -0.9359287619590759, 0.9359057545661926, -0.32227325439453125, 0.3284286856651306, False)
+
+ # # reset view to fit data bounds
+ # renderView1.ResetCamera(-1.0, 1.0257619619369507, -0.9359287619590759, 0.9359057545661926, -0.32227325439453125, 0.3284286856651306, False)
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # #================================================================
+ # # addendum: following script captures some of the application
+ # # state to faithfully reproduce the visualization during playback
+ # #================================================================
+
+ # # get layout
+ # layout1 = GetLayout()
+
+ # #--------------------------------
+ # # saving layout sizes for layouts
+
+ # # layout/tab size in pixels
+ # layout1.SetSize(1526, 873)
+
+ # #-----------------------------------
+ # # saving camera placements for views
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [-0.018803465136511217, -6.344229746084431, 0.8643549211317467]
+ # renderView1.CameraFocalPoint = [-0.012119019404053688, -0.0020669102668762207, 0.4409867525100708]
+ # renderView1.CameraViewUp = [-0.03973953847604448, 0.06659538567372057, 0.9969883769075141]
+ # renderView1.CameraViewAngle = 20.04581901489118
+ # renderView1.CameraParallelScale = 1.645126712646716
+
+
+ # # get active view
+ # renderView1 = GetActiveViewOrCreate('RenderView')
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.6190132298381256, -5.978102214366906, 2.4112112938696906]
+ # renderView1.CameraFocalPoint = [-0.012119019404053688, -2.568960189819349e-05, 0.45254665613174444]
+ # renderView1.CameraViewUp = [-0.05404025977722483, 0.305743653322491, 0.9505790176393684]
+ # renderView1.CameraViewAngle = 24.32226040473463
+ # renderView1.CameraParallelScale = 1.6363442723895476
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.3561670752092, -6.043235495365254, 2.2735558848687107]
+ # renderView1.CameraFocalPoint = [-0.012119019404053686, -2.568960189819236e-05, 0.4525466561317445]
+ # renderView1.CameraViewUp = [-0.05311946210744569, 0.28514078064511844, 0.9570125693837611]
+ # renderView1.CameraViewAngle = 24.32226040473463
+ # renderView1.CameraParallelScale = 1.6363442723895476
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.013021130832849942, -5.989702202981394, 2.4762159109807733]
+ # renderView1.CameraFocalPoint = [-0.01211901940405369, -2.5689601898192394e-05, 0.4525466561317443]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 24.32226040473463
+ # renderView1.CameraParallelScale = 1.6363442723895476
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.018300562382599708, -7.247534270791088, 2.9011864544990695]
+ # renderView1.CameraFocalPoint = [-0.01211901940405369, -2.5689601898192394e-05, 0.4525466561317443]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 24.32226040473463
+ # renderView1.CameraParallelScale = 1.6363442723895476
+
+ # # reset view to fit data bounds
+ # renderView1.ResetCamera(-1.0, 1.0257619619369507, -0.9359287619590759, 0.9359057545661926, -0.32227325439453125, 0.3284286856651306, True)
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.03465030801593522, -5.186584602883577, 1.7554108333598906]
+ # renderView1.CameraFocalPoint = [0.012880980968475342, -1.150369644165039e-05, 0.0030777156352996826]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 17.52577319587629
+ # renderView1.CameraParallelScale = 1.416941159547869
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.013021130832849927, -5.98970220298139, 2.4762159109807724]
+ # renderView1.CameraFocalPoint = [-0.012119019404053688, -2.568960189819336e-05, 0.4525466561317444]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 24.4749904543719
+ # renderView1.CameraParallelScale = 1.6363442723895476
+
+ # #================================================================
+ # # addendum: following script captures some of the application
+ # # state to faithfully reproduce the visualization during playback
+ # #================================================================
+
+ # # get layout
+ # layout1 = GetLayout()
+
+ # #--------------------------------
+ # # saving layout sizes for layouts
+
+ # # layout/tab size in pixels
+ # layout1.SetSize(2634, 873)
+
+ # #-----------------------------------
+ # # saving camera placements for views
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.013021130832849927, -5.98970220298139, 2.4762159109807724]
+ # renderView1.CameraFocalPoint = [-0.012119019404053688, -2.568960189819336e-05, 0.4525466561317444]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 24.4749904543719
+ # renderView1.CameraParallelScale = 1.6363442723895476
+
+
+ # CAMERA ANGLE :
+ # get active view
+ renderView1 = GetActiveViewOrCreate('RenderView')
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.340685566276368, -6.094047325708376, 2.353324867421649]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975586, 0.46127742528915405]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.340685566276368, -6.094047325708376, 2.353324867421649]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975586, 0.46127742528915405]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.340685566276368, -6.094047325708376, 2.353324867421649]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975586, 0.46127742528915405]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ #================================================================
+ # addendum: following script captures some of the application
+ # state to faithfully reproduce the visualization during playback
+ #================================================================
+
+ # get layout
+ layout1 = GetLayout()
+
+ #--------------------------------
+ # saving layout sizes for layouts
+
+ # layout/tab size in pixels
+ layout1.SetSize(2634, 873)
+
+ #-----------------------------------
+ # saving camera placements for views
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ #-----------------------------------------
+
+
+ # NEW CAMERA ANGLE
+ # get active view
+ renderView1 = GetActiveViewOrCreate('RenderView')
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [0.029912744310289893, -5.070841782883837, 2.2549998815448675]
+ renderView1.CameraFocalPoint = [-0.01429512538015842, -0.00023770332336425738, 0.013518139719963074]
+ renderView1.CameraViewUp = [-0.00012445946588129702, 0.4043111685224597, 0.9146214864728713]
+ renderView1.CameraViewAngle = 15.234822451317298
+ renderView1.CameraParallelScale = 1.434922768089897
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [0.13564184339304414, -5.002529762527205, 2.399270332667408]
+ renderView1.CameraFocalPoint = [-0.01429512538015842, -0.00023770332336425751, 0.013518139719963072]
+ renderView1.CameraViewUp = [-0.00025096931135483794, 0.4304728027354104, 0.9026035137974622]
+ renderView1.CameraViewAngle = 15.234822451317298
+ renderView1.CameraParallelScale = 1.434922768089897
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [0.1351322919568179, -4.837566763896823, 2.718169591018591]
+ renderView1.CameraFocalPoint = [-0.014295125380158416, -0.00023770332336425754, 0.013518139719963074]
+ renderView1.CameraViewUp = [-0.0025668859947288896, 0.4879570721064113, 0.8728638535749024]
+ renderView1.CameraViewAngle = 15.234822451317298
+ renderView1.CameraParallelScale = 1.434922768089897
+
+ #================================================================
+ # addendum: following script captures some of the application
+ # state to faithfully reproduce the visualization during playback
+ #================================================================
+
+ # get layout
+ layout1 = GetLayout()
+
+ #--------------------------------
+ # saving layout sizes for layouts
+
+ # layout/tab size in pixels
+ layout1.SetSize(2634, 873)
+
+ #-----------------------------------
+ # saving camera placements for views
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [0.1351322919568179, -4.837566763896823, 2.718169591018591]
+ renderView1.CameraFocalPoint = [-0.014295125380158416, -0.00023770332336425754, 0.013518139719963074]
+ renderView1.CameraViewUp = [-0.0025668859947288896, 0.4879570721064113, 0.8728638535749024]
+ renderView1.CameraViewAngle = 15.234822451317298
+ renderView1.CameraParallelScale = 1.434922768089897
+ ###
+
+
+
+
+
+
+ #TEST:Set Size in Pixels:
+ # layout/tab size in pixels
+ layout1.SetSize(750, 620)
+
+
+
+
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+
+
+ # Write to pdf
+ # ExportView(outputName + '.pdf', view=renderView1)
+
+ # export view
+ ExportView(outputName + '.pdf', view=renderView1, Plottitle='ParaView GL2PS Export',
+ Compressoutputfile=0,
+ Drawbackground=1,
+ Cullhiddenprimitives=1,
+ Linewidthscalingfactor=0.714,
+ Pointsizescalingfactor=0.714,
+ GL2PSdepthsortmethod='Simple sorting (fast, good)',
+ Rasterize3Dgeometry=1,
+ Dontrasterizecubeaxes=1,
+ Rendertextaspaths=1)
+
+#================================================================
+# addendum: following script captures some of the application
+# state to faithfully reproduce the visualization during playback
+#================================================================
+
+ # get layout
+ layout1 = GetLayout()
+
+ #--------------------------------
+ # saving layout sizes for layouts
+
+ # layout/tab size in pixels
+ layout1.SetSize(750, 620)
+
+
+
+ # # get active view
+ # renderView1 = GetActiveViewOrCreate('RenderView')
+
+ # # get layout
+ # layout1 = GetLayout()
+
+ # # layout/tab size in pixels
+ # layout1.SetSize(2922, 908)
+
+ # # current camera placement for renderView1
+ # renderView1.InteractionMode = '2D'
+ # renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+ # renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+ # renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+ # renderView1.CameraParallelScale = 1.3953474628479614
+
+ # save screenshot
+ SaveScreenshot(outputName + '.png', renderView1, ImageResolution=[1500, 1240],
+ FontScaling='Scale fonts proportionally',
+ OverrideColorPalette='WhiteBackground',
+ StereoMode='No change',
+ TransparentBackground=0,
+ # PNG options
+ CompressionLevel='5',
+ MetaData=['Application', 'ParaView'])
+
+ # # save screenshot
+ # SaveScreenshot(outputName + '.png', renderView1, ImageResolution=[5844, 1816],
+ # FontScaling='Scale fonts proportionally',
+ # OverrideColorPalette='WhiteBackground',
+ # StereoMode='No change',
+ # TransparentBackground=0,
+ # # PNG options
+ # CompressionLevel='5',
+ # MetaData=['Application', 'ParaView'])
diff --git a/experiment/macro-problem/variableBC/ParaviewVariableBC_birdsview.py b/experiment/macro-problem/variableBC/ParaviewVariableBC_birdsview.py
new file mode 100644
index 0000000000000000000000000000000000000000..5b946e7eb24bfec24eeccd6f3967dcda7dc03b01
--- /dev/null
+++ b/experiment/macro-problem/variableBC/ParaviewVariableBC_birdsview.py
@@ -0,0 +1,2384 @@
+#### import the simple module from the paraview
+from paraview.simple import *
+# from paraview import *
+#### disable automatic camera reset on 'Show'
+paraview.simple._DisableFirstRenderCameraReset()
+
+
+gridLevel = 3
+
+AddGlyph = True
+AddGlyph = False
+
+#Boundary length segment parameter
+deltaArray = [0.25,0.5,1.0,1.5,2.0]
+deltaArray = [0.5]
+
+
+
+for i in range(0, len(deltaArray)):
+ # Reset/Reopen Session.
+ Disconnect()
+ Connect()
+ ResetSession()
+
+
+
+ delta = deltaArray[i]
+
+ """"
+ remove decimal points for string
+ """
+ # deltaString = str(delta);
+ deltaString = (str(delta)).replace('.', '')
+
+ print('deltaString:', deltaString)
+
+
+ basePath = '/home/klaus/Desktop/Dune_TestTest/dune-microstructure/outputs_cylindrical_2variableBC/'
+ experimentName = 'cylindrical_2variableBC_delta' + deltaString + '_level'+ str(gridLevel) + '_NC.vtu'
+ fileName = basePath + experimentName
+ print('fileName:', fileName)
+ # fileName = ['/home/klaus/Desktop/Dune_TestTest/dune-microstructure/outputs_cylindrical_2variableBC/cylindrical_2variableBC_delta01_level3_NC.vtu']
+
+ outputPath = '/home/klaus/Desktop/'
+ outputName = outputPath + 'VariableBC_delta' + deltaString + '_birdsview'
+
+ if AddGlyph:
+ outputName = outputName + '_normalfield'
+
+
+ #----------------------- Create Box to visualize boundary conditions:
+ # create a new 'Box'
+ box1 = Box(registrationName='Box1')
+
+ # get active view
+ renderView1 = GetActiveViewOrCreate('RenderView')
+
+ # show data in view
+ box1Display = Show(box1, renderView1, 'GeometryRepresentation')
+
+ # trace defaults for the display properties.
+ box1Display.Representation = 'Surface'
+ box1Display.ColorArrayName = [None, '']
+ box1Display.SelectTCoordArray = 'TCoords'
+ box1Display.SelectNormalArray = 'Normals'
+ box1Display.SelectTangentArray = 'None'
+ box1Display.OSPRayScaleArray = 'Normals'
+ box1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+ box1Display.SelectOrientationVectors = 'None'
+ box1Display.ScaleFactor = 0.1
+ box1Display.SelectScaleArray = 'None'
+ box1Display.GlyphType = 'Arrow'
+ box1Display.GlyphTableIndexArray = 'None'
+ box1Display.GaussianRadius = 0.005
+ box1Display.SetScaleArray = ['POINTS', 'Normals']
+ box1Display.ScaleTransferFunction = 'PiecewiseFunction'
+ box1Display.OpacityArray = ['POINTS', 'Normals']
+ box1Display.OpacityTransferFunction = 'PiecewiseFunction'
+ box1Display.DataAxesGrid = 'GridAxesRepresentation'
+ box1Display.PolarAxes = 'PolarAxesRepresentation'
+
+ # init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+ box1Display.ScaleTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+ # init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+ box1Display.OpacityTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+
+ # Properties modified on box1
+ box1.XLength = 2.0
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Properties modified on box1
+ box1.XLength = 0.1
+ box1.YLength = delta
+ box1.ZLength = 0.1
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Properties modified on box1Display
+ box1Display.Position = [-1.0, 0.0, 0.0]
+
+ # Properties modified on box1Display.DataAxesGrid
+ box1Display.DataAxesGrid.Position = [-1.0, 0.0, 0.0]
+
+ # Properties modified on box1Display.PolarAxes
+ box1Display.PolarAxes.Translation = [-1.0, 0.0, 0.0]
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+ #-------------------------------------------------------------------------------
+
+
+
+ # create a new 'XML Unstructured Grid Reader'
+ cylindrical_2variableBC_delta15_level3_NCvtu = XMLUnstructuredGridReader(registrationName=experimentName, FileName=[fileName])
+ cylindrical_2variableBC_delta15_level3_NCvtu.CellArrayStatus = []
+ cylindrical_2variableBC_delta15_level3_NCvtu.PointArrayStatus = ['Displacement dune-VTK', 'IsometryErrorFunction', 'SurfaceNormalDiscrete']
+ cylindrical_2variableBC_delta15_level3_NCvtu.TimeArray = 'TimeValue'
+
+ # Properties modified on cylindrical_2variableBC_delta15_level3_NCvtu
+ cylindrical_2variableBC_delta15_level3_NCvtu.TimeArray = 'None'
+
+ # get active view
+ renderView1 = GetActiveViewOrCreate('RenderView')
+
+ # show data in view
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay = Show(cylindrical_2variableBC_delta15_level3_NCvtu, renderView1, 'UnstructuredGridRepresentation')
+
+ # get 2D transfer function for 'IsometryErrorFunction'
+ isometryErrorFunctionTF2D = GetTransferFunction2D('IsometryErrorFunction')
+ isometryErrorFunctionTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ isometryErrorFunctionTF2D.Boxes = []
+ isometryErrorFunctionTF2D.ScalarRangeInitialized = 0
+ isometryErrorFunctionTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+ isometryErrorFunctionTF2D.OutputDimensions = [10, 10]
+
+ # get color transfer function/color map for 'IsometryErrorFunction'
+ isometryErrorFunctionLUT = GetColorTransferFunction('IsometryErrorFunction')
+ isometryErrorFunctionLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ isometryErrorFunctionLUT.InterpretValuesAsCategories = 0
+ isometryErrorFunctionLUT.AnnotationsInitialized = 0
+ isometryErrorFunctionLUT.ShowCategoricalColorsinDataRangeOnly = 0
+ isometryErrorFunctionLUT.RescaleOnVisibilityChange = 0
+ isometryErrorFunctionLUT.EnableOpacityMapping = 0
+ isometryErrorFunctionLUT.TransferFunction2D = isometryErrorFunctionTF2D
+ isometryErrorFunctionLUT.Use2DTransferFunction = 0
+ isometryErrorFunctionLUT.RGBPoints = [0.0, 0.231373, 0.298039, 0.752941, 0.030321702361106873, 0.865003, 0.865003, 0.865003, 0.060643404722213745, 0.705882, 0.0156863, 0.14902]
+ isometryErrorFunctionLUT.UseLogScale = 0
+ isometryErrorFunctionLUT.UseOpacityControlPointsFreehandDrawing = 0
+ isometryErrorFunctionLUT.ShowDataHistogram = 0
+ isometryErrorFunctionLUT.AutomaticDataHistogramComputation = 0
+ isometryErrorFunctionLUT.DataHistogramNumberOfBins = 10
+ isometryErrorFunctionLUT.ColorSpace = 'Diverging'
+ isometryErrorFunctionLUT.UseBelowRangeColor = 0
+ isometryErrorFunctionLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+ isometryErrorFunctionLUT.UseAboveRangeColor = 0
+ isometryErrorFunctionLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+ isometryErrorFunctionLUT.NanColor = [1.0, 1.0, 0.0]
+ isometryErrorFunctionLUT.NanOpacity = 1.0
+ isometryErrorFunctionLUT.Discretize = 1
+ isometryErrorFunctionLUT.NumberOfTableValues = 256
+ isometryErrorFunctionLUT.ScalarRangeInitialized = 1.0
+ isometryErrorFunctionLUT.HSVWrap = 0
+ isometryErrorFunctionLUT.VectorComponent = 0
+ isometryErrorFunctionLUT.VectorMode = 'Magnitude'
+ isometryErrorFunctionLUT.AllowDuplicateScalars = 1
+ isometryErrorFunctionLUT.Annotations = []
+ isometryErrorFunctionLUT.ActiveAnnotatedValues = []
+ isometryErrorFunctionLUT.IndexedColors = []
+ isometryErrorFunctionLUT.IndexedOpacities = []
+
+ # get opacity transfer function/opacity map for 'IsometryErrorFunction'
+ isometryErrorFunctionPWF = GetOpacityTransferFunction('IsometryErrorFunction')
+ isometryErrorFunctionPWF.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ isometryErrorFunctionPWF.AllowDuplicateScalars = 1
+ isometryErrorFunctionPWF.UseLogScale = 0
+ isometryErrorFunctionPWF.ScalarRangeInitialized = 1
+
+ # trace defaults for the display properties.
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Selection = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Representation = 'Surface'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LookupTable = isometryErrorFunctionLUT
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MapScalars = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MultiComponentsMapping = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.InterpolateScalarsBeforeMapping = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Opacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PointSize = 2.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LineWidth = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.RenderLinesAsTubes = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.RenderPointsAsSpheres = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Interpolation = 'Gouraud'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Specular = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SpecularColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SpecularPower = 100.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Luminosity = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Ambient = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Diffuse = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Roughness = 0.3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Metallic = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EdgeTint = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Anisotropy = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.AnisotropyRotation = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BaseIOR = 1.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatStrength = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatIOR = 2.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatRoughness = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectTCoordArray = 'None'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectNormalArray = 'None'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectTangentArray = 'None'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Texture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.RepeatTextures = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.InterpolateTextures = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SeamlessU = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SeamlessV = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseMipmapTextures = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ShowTexturesOnBackface = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BaseColorTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NormalTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NormalScale = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatNormalTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoatNormalScale = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaterialTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OcclusionStrength = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.AnisotropyTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EmissiveTexture = None
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EmissiveFactor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.FlipTextures = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BackfaceRepresentation = 'Follow Frontface'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BackfaceOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Position = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Scale = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Orientation = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Origin = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Pickable = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Triangulate = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseShaderReplacements = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ShaderReplacements = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NonlinearSubdivisionLevel = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseDataPartitions = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayUseScaleArray = 'All Approximate'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayScaleArray = 'IsometryErrorFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayScaleFunction = 'PiecewiseFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayMaterial = 'None'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BlockSelectors = ['/']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BlockColors = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.BlockOpacities = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Orient = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OrientationMode = 'Direction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectOrientationVectors = 'Displacement dune-VTK'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Scaling = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleMode = 'No Data Scaling Off'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleFactor = 0.2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectScaleArray = 'IsometryErrorFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType = 'Arrow'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseGlyphTable = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphTableIndexArray = 'IsometryErrorFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseCompositeGlyphTable = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseGlyphCullingAndLOD = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LODValues = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ColorByLODIndex = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GaussianRadius = 0.01
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ShaderPreset = 'Sphere'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CustomTriangleScale = 3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+ """
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Emissive = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleByArray = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleArrayComponent = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseScaleFunction = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleTransferFunction = 'PiecewiseFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityByArray = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityArrayComponent = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityTransferFunction = 'PiecewiseFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid = 'GridAxesRepresentation'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelFontSize = 18
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelJustification = 'Left'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionCellLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelFontSize = 18
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelJustification = 'Left'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectionPointLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes = 'PolarAxesRepresentation'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScalarOpacityFunction = isometryErrorFunctionPWF
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScalarOpacityUnitDistance = 0.22272467953508482
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseSeparateOpacityArray = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityComponent = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectMapper = 'Projected tetra'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SamplingDimensions = [128, 128, 128]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseFloatingPointFrameBuffer = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NumberOfSteps = 40
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.StepSize = 0.25
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NormalizeVectors = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EnhancedLIC = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ColorMode = 'Blend'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LICIntensity = 0.8
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MapModeBias = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.EnhanceContrast = 'Off'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LowLICContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.HighLICContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.LowColorContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.HighColorContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.AntiAlias = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaskOnSurface = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaskThreshold = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaskIntensity = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaskColor = [0.5, 0.5, 0.5]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GenerateNoiseTexture = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NoiseType = 'Gaussian'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NoiseTextureSize = 128
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NoiseGrainSize = 2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MinNoiseValue = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.MaxNoiseValue = 0.8
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NumberOfNoiseLevels = 1024
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ImpulseNoiseProbability = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ImpulseNoiseBackgroundValue = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.NoiseGeneratorSeed = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.CompositeStrategy = 'AUTO'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.UseLICForLOD = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.WriteLog = ''
+
+ # init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OSPRayScaleFunction.UseLogScale = 0
+
+ # init the 'Arrow' selected for 'GlyphType'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.TipResolution = 6
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.TipRadius = 0.1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.TipLength = 0.35
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.ShaftResolution = 6
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.ShaftRadius = 0.03
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.GlyphType.Invert = 0
+
+ # init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.ScaleTransferFunction.UseLogScale = 0
+
+ # init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.OpacityTransferFunction.UseLogScale = 0
+
+ # init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitle = 'X Axis'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitle = 'Y Axis'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitle = 'Z Axis'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XTitleOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YTitleOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZTitleOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.FacesToRender = 63
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.CullBackface = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.CullFrontface = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ShowGrid = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ShowEdges = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ShowTicks = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.LabelUniqueEdgesOnly = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.AxesToLabel = 63
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XAxisNotation = 'Mixed'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XAxisPrecision = 2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XAxisUseCustomLabels = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.XAxisLabels = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YAxisNotation = 'Mixed'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YAxisPrecision = 2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YAxisUseCustomLabels = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.YAxisLabels = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZAxisNotation = 'Mixed'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZAxisPrecision = 2
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZAxisUseCustomLabels = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.ZAxisLabels = []
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.UseCustomBounds = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+ # init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Visibility = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Translation = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Scale = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.EnableCustomBounds = [0, 0, 0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.EnableCustomRange = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.CustomRange = [0.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialAxesVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DrawRadialGridlines = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarArcsVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DrawPolarArcsGridlines = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.NumberOfRadialAxes = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.AutoSubdividePolarAxis = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.NumberOfPolarAxis = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.MinimumRadius = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.MinimumAngle = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.MaximumAngle = 90.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialAxesOriginToPolarAxis = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Ratio = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitle = 'Radial Distance'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarLabelVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarLabelFormat = '%-#6.3g'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarLabelExponentLocation = 'Labels'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialLabelVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialLabelFormat = '%-#3.1f'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialLabelLocation = 'Bottom'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.RadialUnitsVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ScreenSize = 10.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextBold = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextItalic = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextShadow = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.EnableDistanceLOD = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DistanceLODThreshold = 0.7
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.EnableViewAngleLOD = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ViewAngleLODThreshold = 0.7
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.SmallestVisiblePolarAngle = 0.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarTicksVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcTicksOriginToPolarAxis = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.TickLocation = 'Both'
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.AxisTickVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.AxisMinorTickVisibility = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcTickVisibility = 1
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcMinorTickVisibility = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DeltaAngleMajor = 10.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.DeltaAngleMinor = 5.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisMajorTickSize = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTickRatioSize = 0.3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisMajorTickThickness = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.PolarAxisTickRatioThickness = 0.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcMajorTickSize = 0.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcTickRatioSize = 0.3
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcMajorTickThickness = 1.0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.ArcTickRatioThickness = 0.5
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.Use2DMode = 0
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.PolarAxes.UseLogAxis = 0
+
+ # show color bar/color legend
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+ # find source
+ box1 = FindSource('Box1')
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # set scalar coloring
+ ColorBy(cylindrical_2variableBC_delta15_level3_NCvtuDisplay, ('POINTS', 'Displacement dune-VTK', 'Magnitude'))
+
+ # Hide the scalar bar for this color map if no visible data is colored by it.
+ HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+ # rescale color and/or opacity maps used to include current data range
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.RescaleTransferFunctionToDataRange(True, False)
+
+ # show color bar/color legend
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.SetScalarBarVisibility(renderView1, True)
+
+ # get 2D transfer function for 'DisplacementduneVTK'
+ displacementduneVTKTF2D = GetTransferFunction2D('DisplacementduneVTK')
+ displacementduneVTKTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ displacementduneVTKTF2D.Boxes = []
+ displacementduneVTKTF2D.ScalarRangeInitialized = 0
+ displacementduneVTKTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+ displacementduneVTKTF2D.OutputDimensions = [10, 10]
+
+ # get color transfer function/color map for 'DisplacementduneVTK'
+ displacementduneVTKLUT = GetColorTransferFunction('DisplacementduneVTK')
+ displacementduneVTKLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ displacementduneVTKLUT.InterpretValuesAsCategories = 0
+ displacementduneVTKLUT.AnnotationsInitialized = 0
+ displacementduneVTKLUT.ShowCategoricalColorsinDataRangeOnly = 0
+ displacementduneVTKLUT.RescaleOnVisibilityChange = 0
+ displacementduneVTKLUT.EnableOpacityMapping = 0
+ displacementduneVTKLUT.TransferFunction2D = displacementduneVTKTF2D
+ displacementduneVTKLUT.Use2DTransferFunction = 0
+ displacementduneVTKLUT.RGBPoints = [0.0, 0.231373, 0.298039, 0.752941, 0.6756904005417563, 0.865003, 0.865003, 0.865003, 1.3513808010835127, 0.705882, 0.0156863, 0.14902]
+ displacementduneVTKLUT.UseLogScale = 0
+ displacementduneVTKLUT.UseOpacityControlPointsFreehandDrawing = 0
+ displacementduneVTKLUT.ShowDataHistogram = 0
+ displacementduneVTKLUT.AutomaticDataHistogramComputation = 0
+ displacementduneVTKLUT.DataHistogramNumberOfBins = 10
+ displacementduneVTKLUT.ColorSpace = 'Diverging'
+ displacementduneVTKLUT.UseBelowRangeColor = 0
+ displacementduneVTKLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+ displacementduneVTKLUT.UseAboveRangeColor = 0
+ displacementduneVTKLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+ displacementduneVTKLUT.NanColor = [1.0, 1.0, 0.0]
+ displacementduneVTKLUT.NanOpacity = 1.0
+ displacementduneVTKLUT.Discretize = 1
+ displacementduneVTKLUT.NumberOfTableValues = 256
+ displacementduneVTKLUT.ScalarRangeInitialized = 1.0
+ displacementduneVTKLUT.HSVWrap = 0
+ displacementduneVTKLUT.VectorComponent = 0
+ displacementduneVTKLUT.VectorMode = 'Magnitude'
+ displacementduneVTKLUT.AllowDuplicateScalars = 1
+ displacementduneVTKLUT.Annotations = []
+ displacementduneVTKLUT.ActiveAnnotatedValues = []
+ displacementduneVTKLUT.IndexedColors = []
+ displacementduneVTKLUT.IndexedOpacities = []
+
+ # get opacity transfer function/opacity map for 'DisplacementduneVTK'
+ displacementduneVTKPWF = GetOpacityTransferFunction('DisplacementduneVTK')
+ displacementduneVTKPWF.Points = [0.0, 0.0, 0.5, 0.0, 1.3513808010835127, 1.0, 0.5, 0.0]
+ displacementduneVTKPWF.AllowDuplicateScalars = 1
+ displacementduneVTKPWF.UseLogScale = 0
+ displacementduneVTKPWF.ScalarRangeInitialized = 1
+
+ # create a new 'Warp By Vector'
+ warpByVector1 = WarpByVector(registrationName='WarpByVector1', Input=cylindrical_2variableBC_delta15_level3_NCvtu)
+ warpByVector1.Vectors = ['POINTS', 'Displacement dune-VTK']
+ warpByVector1.ScaleFactor = 1.0
+
+ # show data in view
+ warpByVector1Display = Show(warpByVector1, renderView1, 'UnstructuredGridRepresentation')
+
+ # trace defaults for the display properties.
+ warpByVector1Display.Selection = None
+ warpByVector1Display.Representation = 'Surface'
+ warpByVector1Display.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+ warpByVector1Display.LookupTable = isometryErrorFunctionLUT
+ warpByVector1Display.MapScalars = 1
+ warpByVector1Display.MultiComponentsMapping = 0
+ warpByVector1Display.InterpolateScalarsBeforeMapping = 1
+ warpByVector1Display.Opacity = 1.0
+ warpByVector1Display.PointSize = 2.0
+ warpByVector1Display.LineWidth = 1.0
+ warpByVector1Display.RenderLinesAsTubes = 0
+ warpByVector1Display.RenderPointsAsSpheres = 0
+ warpByVector1Display.Interpolation = 'Gouraud'
+ warpByVector1Display.Specular = 0.0
+ warpByVector1Display.SpecularColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.SpecularPower = 100.0
+ warpByVector1Display.Luminosity = 0.0
+ warpByVector1Display.Ambient = 0.0
+ warpByVector1Display.Diffuse = 1.0
+ warpByVector1Display.Roughness = 0.3
+ warpByVector1Display.Metallic = 0.0
+ warpByVector1Display.EdgeTint = [1.0, 1.0, 1.0]
+ warpByVector1Display.Anisotropy = 0.0
+ warpByVector1Display.AnisotropyRotation = 0.0
+ warpByVector1Display.BaseIOR = 1.5
+ warpByVector1Display.CoatStrength = 0.0
+ warpByVector1Display.CoatIOR = 2.0
+ warpByVector1Display.CoatRoughness = 0.0
+ warpByVector1Display.CoatColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.SelectTCoordArray = 'None'
+ warpByVector1Display.SelectNormalArray = 'None'
+ warpByVector1Display.SelectTangentArray = 'None'
+ warpByVector1Display.Texture = None
+ warpByVector1Display.RepeatTextures = 1
+ warpByVector1Display.InterpolateTextures = 0
+ warpByVector1Display.SeamlessU = 0
+ warpByVector1Display.SeamlessV = 0
+ warpByVector1Display.UseMipmapTextures = 0
+ warpByVector1Display.ShowTexturesOnBackface = 1
+ warpByVector1Display.BaseColorTexture = None
+ warpByVector1Display.NormalTexture = None
+ warpByVector1Display.NormalScale = 1.0
+ warpByVector1Display.CoatNormalTexture = None
+ warpByVector1Display.CoatNormalScale = 1.0
+ warpByVector1Display.MaterialTexture = None
+ warpByVector1Display.OcclusionStrength = 1.0
+ warpByVector1Display.AnisotropyTexture = None
+ warpByVector1Display.EmissiveTexture = None
+ warpByVector1Display.EmissiveFactor = [1.0, 1.0, 1.0]
+ warpByVector1Display.FlipTextures = 0
+ warpByVector1Display.BackfaceRepresentation = 'Follow Frontface'
+ warpByVector1Display.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.BackfaceOpacity = 1.0
+ warpByVector1Display.Position = [0.0, 0.0, 0.0]
+ warpByVector1Display.Scale = [1.0, 1.0, 1.0]
+ warpByVector1Display.Orientation = [0.0, 0.0, 0.0]
+ warpByVector1Display.Origin = [0.0, 0.0, 0.0]
+ warpByVector1Display.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+ warpByVector1Display.Pickable = 1
+ warpByVector1Display.Triangulate = 0
+ warpByVector1Display.UseShaderReplacements = 0
+ warpByVector1Display.ShaderReplacements = ''
+ warpByVector1Display.NonlinearSubdivisionLevel = 1
+ warpByVector1Display.UseDataPartitions = 0
+ warpByVector1Display.OSPRayUseScaleArray = 'All Approximate'
+ warpByVector1Display.OSPRayScaleArray = 'IsometryErrorFunction'
+ warpByVector1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+ warpByVector1Display.OSPRayMaterial = 'None'
+ warpByVector1Display.BlockSelectors = ['/']
+ warpByVector1Display.BlockColors = []
+ warpByVector1Display.BlockOpacities = []
+ warpByVector1Display.Orient = 0
+ warpByVector1Display.OrientationMode = 'Direction'
+ warpByVector1Display.SelectOrientationVectors = 'Displacement dune-VTK'
+ warpByVector1Display.Scaling = 0
+ warpByVector1Display.ScaleMode = 'No Data Scaling Off'
+ warpByVector1Display.ScaleFactor = 0.19999914765357973
+ warpByVector1Display.SelectScaleArray = 'IsometryErrorFunction'
+ warpByVector1Display.GlyphType = 'Arrow'
+ warpByVector1Display.UseGlyphTable = 0
+ warpByVector1Display.GlyphTableIndexArray = 'IsometryErrorFunction'
+ warpByVector1Display.UseCompositeGlyphTable = 0
+ warpByVector1Display.UseGlyphCullingAndLOD = 0
+ warpByVector1Display.LODValues = []
+ warpByVector1Display.ColorByLODIndex = 0
+ warpByVector1Display.GaussianRadius = 0.009999957382678986
+ warpByVector1Display.ShaderPreset = 'Sphere'
+ warpByVector1Display.CustomTriangleScale = 3
+ warpByVector1Display.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+ """
+ warpByVector1Display.Emissive = 0
+ warpByVector1Display.ScaleByArray = 0
+ warpByVector1Display.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+ warpByVector1Display.ScaleArrayComponent = ''
+ warpByVector1Display.UseScaleFunction = 1
+ warpByVector1Display.ScaleTransferFunction = 'PiecewiseFunction'
+ warpByVector1Display.OpacityByArray = 0
+ warpByVector1Display.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+ warpByVector1Display.OpacityArrayComponent = ''
+ warpByVector1Display.OpacityTransferFunction = 'PiecewiseFunction'
+ warpByVector1Display.DataAxesGrid = 'GridAxesRepresentation'
+ warpByVector1Display.SelectionCellLabelBold = 0
+ warpByVector1Display.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+ warpByVector1Display.SelectionCellLabelFontFamily = 'Arial'
+ warpByVector1Display.SelectionCellLabelFontFile = ''
+ warpByVector1Display.SelectionCellLabelFontSize = 18
+ warpByVector1Display.SelectionCellLabelItalic = 0
+ warpByVector1Display.SelectionCellLabelJustification = 'Left'
+ warpByVector1Display.SelectionCellLabelOpacity = 1.0
+ warpByVector1Display.SelectionCellLabelShadow = 0
+ warpByVector1Display.SelectionPointLabelBold = 0
+ warpByVector1Display.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+ warpByVector1Display.SelectionPointLabelFontFamily = 'Arial'
+ warpByVector1Display.SelectionPointLabelFontFile = ''
+ warpByVector1Display.SelectionPointLabelFontSize = 18
+ warpByVector1Display.SelectionPointLabelItalic = 0
+ warpByVector1Display.SelectionPointLabelJustification = 'Left'
+ warpByVector1Display.SelectionPointLabelOpacity = 1.0
+ warpByVector1Display.SelectionPointLabelShadow = 0
+ warpByVector1Display.PolarAxes = 'PolarAxesRepresentation'
+ warpByVector1Display.ScalarOpacityFunction = isometryErrorFunctionPWF
+ warpByVector1Display.ScalarOpacityUnitDistance = 0.21902417179491238
+ warpByVector1Display.UseSeparateOpacityArray = 0
+ warpByVector1Display.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+ warpByVector1Display.OpacityComponent = ''
+ warpByVector1Display.SelectMapper = 'Projected tetra'
+ warpByVector1Display.SamplingDimensions = [128, 128, 128]
+ warpByVector1Display.UseFloatingPointFrameBuffer = 1
+ warpByVector1Display.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+ warpByVector1Display.NumberOfSteps = 40
+ warpByVector1Display.StepSize = 0.25
+ warpByVector1Display.NormalizeVectors = 1
+ warpByVector1Display.EnhancedLIC = 1
+ warpByVector1Display.ColorMode = 'Blend'
+ warpByVector1Display.LICIntensity = 0.8
+ warpByVector1Display.MapModeBias = 0.0
+ warpByVector1Display.EnhanceContrast = 'Off'
+ warpByVector1Display.LowLICContrastEnhancementFactor = 0.0
+ warpByVector1Display.HighLICContrastEnhancementFactor = 0.0
+ warpByVector1Display.LowColorContrastEnhancementFactor = 0.0
+ warpByVector1Display.HighColorContrastEnhancementFactor = 0.0
+ warpByVector1Display.AntiAlias = 0
+ warpByVector1Display.MaskOnSurface = 1
+ warpByVector1Display.MaskThreshold = 0.0
+ warpByVector1Display.MaskIntensity = 0.0
+ warpByVector1Display.MaskColor = [0.5, 0.5, 0.5]
+ warpByVector1Display.GenerateNoiseTexture = 0
+ warpByVector1Display.NoiseType = 'Gaussian'
+ warpByVector1Display.NoiseTextureSize = 128
+ warpByVector1Display.NoiseGrainSize = 2
+ warpByVector1Display.MinNoiseValue = 0.0
+ warpByVector1Display.MaxNoiseValue = 0.8
+ warpByVector1Display.NumberOfNoiseLevels = 1024
+ warpByVector1Display.ImpulseNoiseProbability = 1.0
+ warpByVector1Display.ImpulseNoiseBackgroundValue = 0.0
+ warpByVector1Display.NoiseGeneratorSeed = 1
+ warpByVector1Display.CompositeStrategy = 'AUTO'
+ warpByVector1Display.UseLICForLOD = 0
+ warpByVector1Display.WriteLog = ''
+
+ # init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+ warpByVector1Display.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+ warpByVector1Display.OSPRayScaleFunction.UseLogScale = 0
+
+ # init the 'Arrow' selected for 'GlyphType'
+ warpByVector1Display.GlyphType.TipResolution = 6
+ warpByVector1Display.GlyphType.TipRadius = 0.1
+ warpByVector1Display.GlyphType.TipLength = 0.35
+ warpByVector1Display.GlyphType.ShaftResolution = 6
+ warpByVector1Display.GlyphType.ShaftRadius = 0.03
+ warpByVector1Display.GlyphType.Invert = 0
+
+ # init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+ warpByVector1Display.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ warpByVector1Display.ScaleTransferFunction.UseLogScale = 0
+
+ # init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+ warpByVector1Display.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ warpByVector1Display.OpacityTransferFunction.UseLogScale = 0
+
+ # init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+ warpByVector1Display.DataAxesGrid.XTitle = 'X Axis'
+ warpByVector1Display.DataAxesGrid.YTitle = 'Y Axis'
+ warpByVector1Display.DataAxesGrid.ZTitle = 'Z Axis'
+ warpByVector1Display.DataAxesGrid.XTitleFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.XTitleFontFile = ''
+ warpByVector1Display.DataAxesGrid.XTitleBold = 0
+ warpByVector1Display.DataAxesGrid.XTitleItalic = 0
+ warpByVector1Display.DataAxesGrid.XTitleFontSize = 12
+ warpByVector1Display.DataAxesGrid.XTitleShadow = 0
+ warpByVector1Display.DataAxesGrid.XTitleOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.YTitleFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.YTitleFontFile = ''
+ warpByVector1Display.DataAxesGrid.YTitleBold = 0
+ warpByVector1Display.DataAxesGrid.YTitleItalic = 0
+ warpByVector1Display.DataAxesGrid.YTitleFontSize = 12
+ warpByVector1Display.DataAxesGrid.YTitleShadow = 0
+ warpByVector1Display.DataAxesGrid.YTitleOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.ZTitleFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.ZTitleFontFile = ''
+ warpByVector1Display.DataAxesGrid.ZTitleBold = 0
+ warpByVector1Display.DataAxesGrid.ZTitleItalic = 0
+ warpByVector1Display.DataAxesGrid.ZTitleFontSize = 12
+ warpByVector1Display.DataAxesGrid.ZTitleShadow = 0
+ warpByVector1Display.DataAxesGrid.ZTitleOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.FacesToRender = 63
+ warpByVector1Display.DataAxesGrid.CullBackface = 0
+ warpByVector1Display.DataAxesGrid.CullFrontface = 1
+ warpByVector1Display.DataAxesGrid.ShowGrid = 0
+ warpByVector1Display.DataAxesGrid.ShowEdges = 1
+ warpByVector1Display.DataAxesGrid.ShowTicks = 1
+ warpByVector1Display.DataAxesGrid.LabelUniqueEdgesOnly = 1
+ warpByVector1Display.DataAxesGrid.AxesToLabel = 63
+ warpByVector1Display.DataAxesGrid.XLabelFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.XLabelFontFile = ''
+ warpByVector1Display.DataAxesGrid.XLabelBold = 0
+ warpByVector1Display.DataAxesGrid.XLabelItalic = 0
+ warpByVector1Display.DataAxesGrid.XLabelFontSize = 12
+ warpByVector1Display.DataAxesGrid.XLabelShadow = 0
+ warpByVector1Display.DataAxesGrid.XLabelOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.YLabelFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.YLabelFontFile = ''
+ warpByVector1Display.DataAxesGrid.YLabelBold = 0
+ warpByVector1Display.DataAxesGrid.YLabelItalic = 0
+ warpByVector1Display.DataAxesGrid.YLabelFontSize = 12
+ warpByVector1Display.DataAxesGrid.YLabelShadow = 0
+ warpByVector1Display.DataAxesGrid.YLabelOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.ZLabelFontFamily = 'Arial'
+ warpByVector1Display.DataAxesGrid.ZLabelFontFile = ''
+ warpByVector1Display.DataAxesGrid.ZLabelBold = 0
+ warpByVector1Display.DataAxesGrid.ZLabelItalic = 0
+ warpByVector1Display.DataAxesGrid.ZLabelFontSize = 12
+ warpByVector1Display.DataAxesGrid.ZLabelShadow = 0
+ warpByVector1Display.DataAxesGrid.ZLabelOpacity = 1.0
+ warpByVector1Display.DataAxesGrid.XAxisNotation = 'Mixed'
+ warpByVector1Display.DataAxesGrid.XAxisPrecision = 2
+ warpByVector1Display.DataAxesGrid.XAxisUseCustomLabels = 0
+ warpByVector1Display.DataAxesGrid.XAxisLabels = []
+ warpByVector1Display.DataAxesGrid.YAxisNotation = 'Mixed'
+ warpByVector1Display.DataAxesGrid.YAxisPrecision = 2
+ warpByVector1Display.DataAxesGrid.YAxisUseCustomLabels = 0
+ warpByVector1Display.DataAxesGrid.YAxisLabels = []
+ warpByVector1Display.DataAxesGrid.ZAxisNotation = 'Mixed'
+ warpByVector1Display.DataAxesGrid.ZAxisPrecision = 2
+ warpByVector1Display.DataAxesGrid.ZAxisUseCustomLabels = 0
+ warpByVector1Display.DataAxesGrid.ZAxisLabels = []
+ warpByVector1Display.DataAxesGrid.UseCustomBounds = 0
+ warpByVector1Display.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+ # init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+ warpByVector1Display.PolarAxes.Visibility = 0
+ warpByVector1Display.PolarAxes.Translation = [0.0, 0.0, 0.0]
+ warpByVector1Display.PolarAxes.Scale = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+ warpByVector1Display.PolarAxes.EnableCustomBounds = [0, 0, 0]
+ warpByVector1Display.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+ warpByVector1Display.PolarAxes.EnableCustomRange = 0
+ warpByVector1Display.PolarAxes.CustomRange = [0.0, 1.0]
+ warpByVector1Display.PolarAxes.PolarAxisVisibility = 1
+ warpByVector1Display.PolarAxes.RadialAxesVisibility = 1
+ warpByVector1Display.PolarAxes.DrawRadialGridlines = 1
+ warpByVector1Display.PolarAxes.PolarArcsVisibility = 1
+ warpByVector1Display.PolarAxes.DrawPolarArcsGridlines = 1
+ warpByVector1Display.PolarAxes.NumberOfRadialAxes = 0
+ warpByVector1Display.PolarAxes.AutoSubdividePolarAxis = 1
+ warpByVector1Display.PolarAxes.NumberOfPolarAxis = 0
+ warpByVector1Display.PolarAxes.MinimumRadius = 0.0
+ warpByVector1Display.PolarAxes.MinimumAngle = 0.0
+ warpByVector1Display.PolarAxes.MaximumAngle = 90.0
+ warpByVector1Display.PolarAxes.RadialAxesOriginToPolarAxis = 1
+ warpByVector1Display.PolarAxes.Ratio = 1.0
+ warpByVector1Display.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+ warpByVector1Display.PolarAxes.PolarAxisTitleVisibility = 1
+ warpByVector1Display.PolarAxes.PolarAxisTitle = 'Radial Distance'
+ warpByVector1Display.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+ warpByVector1Display.PolarAxes.PolarLabelVisibility = 1
+ warpByVector1Display.PolarAxes.PolarLabelFormat = '%-#6.3g'
+ warpByVector1Display.PolarAxes.PolarLabelExponentLocation = 'Labels'
+ warpByVector1Display.PolarAxes.RadialLabelVisibility = 1
+ warpByVector1Display.PolarAxes.RadialLabelFormat = '%-#3.1f'
+ warpByVector1Display.PolarAxes.RadialLabelLocation = 'Bottom'
+ warpByVector1Display.PolarAxes.RadialUnitsVisibility = 1
+ warpByVector1Display.PolarAxes.ScreenSize = 10.0
+ warpByVector1Display.PolarAxes.PolarAxisTitleOpacity = 1.0
+ warpByVector1Display.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+ warpByVector1Display.PolarAxes.PolarAxisTitleFontFile = ''
+ warpByVector1Display.PolarAxes.PolarAxisTitleBold = 0
+ warpByVector1Display.PolarAxes.PolarAxisTitleItalic = 0
+ warpByVector1Display.PolarAxes.PolarAxisTitleShadow = 0
+ warpByVector1Display.PolarAxes.PolarAxisTitleFontSize = 12
+ warpByVector1Display.PolarAxes.PolarAxisLabelOpacity = 1.0
+ warpByVector1Display.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+ warpByVector1Display.PolarAxes.PolarAxisLabelFontFile = ''
+ warpByVector1Display.PolarAxes.PolarAxisLabelBold = 0
+ warpByVector1Display.PolarAxes.PolarAxisLabelItalic = 0
+ warpByVector1Display.PolarAxes.PolarAxisLabelShadow = 0
+ warpByVector1Display.PolarAxes.PolarAxisLabelFontSize = 12
+ warpByVector1Display.PolarAxes.LastRadialAxisTextOpacity = 1.0
+ warpByVector1Display.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+ warpByVector1Display.PolarAxes.LastRadialAxisTextFontFile = ''
+ warpByVector1Display.PolarAxes.LastRadialAxisTextBold = 0
+ warpByVector1Display.PolarAxes.LastRadialAxisTextItalic = 0
+ warpByVector1Display.PolarAxes.LastRadialAxisTextShadow = 0
+ warpByVector1Display.PolarAxes.LastRadialAxisTextFontSize = 12
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextBold = 0
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextItalic = 0
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextShadow = 0
+ warpByVector1Display.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+ warpByVector1Display.PolarAxes.EnableDistanceLOD = 1
+ warpByVector1Display.PolarAxes.DistanceLODThreshold = 0.7
+ warpByVector1Display.PolarAxes.EnableViewAngleLOD = 1
+ warpByVector1Display.PolarAxes.ViewAngleLODThreshold = 0.7
+ warpByVector1Display.PolarAxes.SmallestVisiblePolarAngle = 0.5
+ warpByVector1Display.PolarAxes.PolarTicksVisibility = 1
+ warpByVector1Display.PolarAxes.ArcTicksOriginToPolarAxis = 1
+ warpByVector1Display.PolarAxes.TickLocation = 'Both'
+ warpByVector1Display.PolarAxes.AxisTickVisibility = 1
+ warpByVector1Display.PolarAxes.AxisMinorTickVisibility = 0
+ warpByVector1Display.PolarAxes.ArcTickVisibility = 1
+ warpByVector1Display.PolarAxes.ArcMinorTickVisibility = 0
+ warpByVector1Display.PolarAxes.DeltaAngleMajor = 10.0
+ warpByVector1Display.PolarAxes.DeltaAngleMinor = 5.0
+ warpByVector1Display.PolarAxes.PolarAxisMajorTickSize = 0.0
+ warpByVector1Display.PolarAxes.PolarAxisTickRatioSize = 0.3
+ warpByVector1Display.PolarAxes.PolarAxisMajorTickThickness = 1.0
+ warpByVector1Display.PolarAxes.PolarAxisTickRatioThickness = 0.5
+ warpByVector1Display.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+ warpByVector1Display.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+ warpByVector1Display.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+ warpByVector1Display.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+ warpByVector1Display.PolarAxes.ArcMajorTickSize = 0.0
+ warpByVector1Display.PolarAxes.ArcTickRatioSize = 0.3
+ warpByVector1Display.PolarAxes.ArcMajorTickThickness = 1.0
+ warpByVector1Display.PolarAxes.ArcTickRatioThickness = 0.5
+ warpByVector1Display.PolarAxes.Use2DMode = 0
+ warpByVector1Display.PolarAxes.UseLogAxis = 0
+
+ # hide data in view
+ Hide(cylindrical_2variableBC_delta15_level3_NCvtu, renderView1)
+
+ # show color bar/color legend
+ warpByVector1Display.SetScalarBarVisibility(renderView1, True)
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # set scalar coloring
+ ColorBy(warpByVector1Display, ('POINTS', 'Displacement dune-VTK', 'Magnitude'))
+
+ # Hide the scalar bar for this color map if no visible data is colored by it.
+ HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+ # rescale color and/or opacity maps used to include current data range
+ warpByVector1Display.RescaleTransferFunctionToDataRange(True, False)
+
+ # show color bar/color legend
+ warpByVector1Display.SetScalarBarVisibility(renderView1, True)
+
+ # Apply a preset using its name. Note this may not work as expected when presets have duplicate names.
+ displacementduneVTKLUT.ApplyPreset('Greens', True)
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.00013513808010835127, 1.3513808010835127)
+
+ # Rescale transfer function
+ displacementduneVTKPWF.RescaleTransferFunction(0.00013513808010835127, 1.3513808010835127)
+
+ # convert to log space
+ displacementduneVTKLUT.MapControlPointsToLogSpace()
+
+ # Properties modified on displacementduneVTKLUT
+ displacementduneVTKLUT.UseLogScale = 1
+
+ # hide color bar/color legend
+ warpByVector1Display.SetScalarBarVisibility(renderView1, False)
+
+ # reset view to fit data bounds
+ renderView1.ResetCamera(-1.0, 0.48625946044921875, -0.9997166991233826, 1.0002747774124146, -0.03165162727236748, 1.2042447328567505, True)
+
+ # Properties modified on renderView1
+ renderView1.OrientationAxesVisibility = 0
+
+ # Properties modified on warpByVector1Display
+ warpByVector1Display.Specular = 0.0
+
+ # Properties modified on warpByVector1Display
+ warpByVector1Display.Interpolation = 'Flat'
+
+ # set active source
+ SetActiveSource(cylindrical_2variableBC_delta15_level3_NCvtu)
+
+ # Properties modified on cylindrical_2variableBC_delta15_level3_NCvtuDisplay
+ cylindrical_2variableBC_delta15_level3_NCvtuDisplay.Specular = 0.0
+
+ # set active source
+ SetActiveSource(warpByVector1)
+
+ # Properties modified on warpByVector1Display
+ warpByVector1Display.Ambient = 0.2
+
+ # Properties modified on warpByVector1Display
+ warpByVector1Display.NonlinearSubdivisionLevel = 4
+
+ if AddGlyph:
+ # create a new 'Glyph'
+ glyph1 = Glyph(registrationName='Glyph1', Input=warpByVector1,
+ GlyphType='Arrow')
+ glyph1.OrientationArray = ['POINTS', 'Displacement dune-VTK']
+ glyph1.ScaleArray = ['POINTS', 'IsometryErrorFunction']
+ glyph1.VectorScaleMode = 'Scale by Magnitude'
+ glyph1.ScaleFactor = 0.19999914765357973
+ glyph1.GlyphTransform = 'Transform2'
+ glyph1.GlyphMode = 'Uniform Spatial Distribution (Bounds Based)'
+ glyph1.MaximumNumberOfSamplePoints = 5000
+ glyph1.Seed = 10339
+ glyph1.Stride = 1
+
+ # init the 'Arrow' selected for 'GlyphType'
+ glyph1.GlyphType.TipResolution = 30
+ glyph1.GlyphType.TipRadius = 0.075
+ glyph1.GlyphType.TipLength = 0.35
+ glyph1.GlyphType.ShaftResolution = 30
+ glyph1.GlyphType.ShaftRadius = 0.015
+ glyph1.GlyphType.Invert = 0
+
+ # init the 'Transform2' selected for 'GlyphTransform'
+ glyph1.GlyphTransform.Translate = [0.0, 0.0, 0.0]
+ glyph1.GlyphTransform.Rotate = [0.0, 0.0, 0.0]
+ glyph1.GlyphTransform.Scale = [1.0, 1.0, 1.0]
+
+ # Properties modified on glyph1
+ glyph1.OrientationArray = ['POINTS', 'SurfaceNormalDiscrete']
+ glyph1.ScaleArray = ['POINTS', 'No scale array']
+ # glyph1.ScaleFactor = 0.1
+ glyph1.ScaleFactor = 0.15
+ glyph1.GlyphMode = 'Every Nth Point'
+ glyph1.Stride = 35
+
+ # show data in view
+ glyph1Display = Show(glyph1, renderView1, 'GeometryRepresentation')
+
+ # trace defaults for the display properties.
+ glyph1Display.Selection = None
+ glyph1Display.Representation = 'Surface'
+ glyph1Display.ColorArrayName = ['POINTS', 'IsometryErrorFunction']
+ glyph1Display.LookupTable = isometryErrorFunctionLUT
+ glyph1Display.MapScalars = 1
+ glyph1Display.MultiComponentsMapping = 0
+ glyph1Display.InterpolateScalarsBeforeMapping = 1
+ glyph1Display.Opacity = 1.0
+ glyph1Display.PointSize = 2.0
+ glyph1Display.LineWidth = 1.0
+ glyph1Display.RenderLinesAsTubes = 0
+ glyph1Display.RenderPointsAsSpheres = 0
+ glyph1Display.Interpolation = 'Gouraud'
+ glyph1Display.Specular = 0.0
+ glyph1Display.SpecularColor = [1.0, 1.0, 1.0]
+ glyph1Display.SpecularPower = 100.0
+ glyph1Display.Luminosity = 0.0
+ glyph1Display.Ambient = 0.0
+ glyph1Display.Diffuse = 1.0
+ glyph1Display.Roughness = 0.3
+ glyph1Display.Metallic = 0.0
+ glyph1Display.EdgeTint = [1.0, 1.0, 1.0]
+ glyph1Display.Anisotropy = 0.0
+ glyph1Display.AnisotropyRotation = 0.0
+ glyph1Display.BaseIOR = 1.5
+ glyph1Display.CoatStrength = 0.0
+ glyph1Display.CoatIOR = 2.0
+ glyph1Display.CoatRoughness = 0.0
+ glyph1Display.CoatColor = [1.0, 1.0, 1.0]
+ glyph1Display.SelectTCoordArray = 'None'
+ glyph1Display.SelectNormalArray = 'None'
+ glyph1Display.SelectTangentArray = 'None'
+ glyph1Display.Texture = None
+ glyph1Display.RepeatTextures = 1
+ glyph1Display.InterpolateTextures = 0
+ glyph1Display.SeamlessU = 0
+ glyph1Display.SeamlessV = 0
+ glyph1Display.UseMipmapTextures = 0
+ glyph1Display.ShowTexturesOnBackface = 1
+ glyph1Display.BaseColorTexture = None
+ glyph1Display.NormalTexture = None
+ glyph1Display.NormalScale = 1.0
+ glyph1Display.CoatNormalTexture = None
+ glyph1Display.CoatNormalScale = 1.0
+ glyph1Display.MaterialTexture = None
+ glyph1Display.OcclusionStrength = 1.0
+ glyph1Display.AnisotropyTexture = None
+ glyph1Display.EmissiveTexture = None
+ glyph1Display.EmissiveFactor = [1.0, 1.0, 1.0]
+ glyph1Display.FlipTextures = 0
+ glyph1Display.BackfaceRepresentation = 'Follow Frontface'
+ glyph1Display.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+ glyph1Display.BackfaceOpacity = 1.0
+ glyph1Display.Position = [0.0, 0.0, 0.0]
+ glyph1Display.Scale = [1.0, 1.0, 1.0]
+ glyph1Display.Orientation = [0.0, 0.0, 0.0]
+ glyph1Display.Origin = [0.0, 0.0, 0.0]
+ glyph1Display.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+ glyph1Display.Pickable = 1
+ glyph1Display.Triangulate = 0
+ glyph1Display.UseShaderReplacements = 0
+ glyph1Display.ShaderReplacements = ''
+ glyph1Display.NonlinearSubdivisionLevel = 1
+ glyph1Display.UseDataPartitions = 0
+ glyph1Display.OSPRayUseScaleArray = 'All Approximate'
+ glyph1Display.OSPRayScaleArray = 'IsometryErrorFunction'
+ glyph1Display.OSPRayScaleFunction = 'PiecewiseFunction'
+ glyph1Display.OSPRayMaterial = 'None'
+ glyph1Display.BlockSelectors = ['/']
+ glyph1Display.BlockColors = []
+ glyph1Display.BlockOpacities = []
+ glyph1Display.Orient = 0
+ glyph1Display.OrientationMode = 'Direction'
+ glyph1Display.SelectOrientationVectors = 'Displacement dune-VTK'
+ glyph1Display.Scaling = 0
+ glyph1Display.ScaleMode = 'No Data Scaling Off'
+ glyph1Display.ScaleFactor = 0.205192768573761
+ glyph1Display.SelectScaleArray = 'IsometryErrorFunction'
+ glyph1Display.GlyphType = 'Arrow'
+ glyph1Display.UseGlyphTable = 0
+ glyph1Display.GlyphTableIndexArray = 'IsometryErrorFunction'
+ glyph1Display.UseCompositeGlyphTable = 0
+ glyph1Display.UseGlyphCullingAndLOD = 0
+ glyph1Display.LODValues = []
+ glyph1Display.ColorByLODIndex = 0
+ glyph1Display.GaussianRadius = 0.01025963842868805
+ glyph1Display.ShaderPreset = 'Sphere'
+ glyph1Display.CustomTriangleScale = 3
+ glyph1Display.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+ """
+ glyph1Display.Emissive = 0
+ glyph1Display.ScaleByArray = 0
+ glyph1Display.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+ glyph1Display.ScaleArrayComponent = ''
+ glyph1Display.UseScaleFunction = 1
+ glyph1Display.ScaleTransferFunction = 'PiecewiseFunction'
+ glyph1Display.OpacityByArray = 0
+ glyph1Display.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+ glyph1Display.OpacityArrayComponent = ''
+ glyph1Display.OpacityTransferFunction = 'PiecewiseFunction'
+ glyph1Display.DataAxesGrid = 'GridAxesRepresentation'
+ glyph1Display.SelectionCellLabelBold = 0
+ glyph1Display.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+ glyph1Display.SelectionCellLabelFontFamily = 'Arial'
+ glyph1Display.SelectionCellLabelFontFile = ''
+ glyph1Display.SelectionCellLabelFontSize = 18
+ glyph1Display.SelectionCellLabelItalic = 0
+ glyph1Display.SelectionCellLabelJustification = 'Left'
+ glyph1Display.SelectionCellLabelOpacity = 1.0
+ glyph1Display.SelectionCellLabelShadow = 0
+ glyph1Display.SelectionPointLabelBold = 0
+ glyph1Display.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+ glyph1Display.SelectionPointLabelFontFamily = 'Arial'
+ glyph1Display.SelectionPointLabelFontFile = ''
+ glyph1Display.SelectionPointLabelFontSize = 18
+ glyph1Display.SelectionPointLabelItalic = 0
+ glyph1Display.SelectionPointLabelJustification = 'Left'
+ glyph1Display.SelectionPointLabelOpacity = 1.0
+ glyph1Display.SelectionPointLabelShadow = 0
+ glyph1Display.PolarAxes = 'PolarAxesRepresentation'
+ glyph1Display.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+ glyph1Display.NumberOfSteps = 40
+ glyph1Display.StepSize = 0.25
+ glyph1Display.NormalizeVectors = 1
+ glyph1Display.EnhancedLIC = 1
+ glyph1Display.ColorMode = 'Blend'
+ glyph1Display.LICIntensity = 0.8
+ glyph1Display.MapModeBias = 0.0
+ glyph1Display.EnhanceContrast = 'Off'
+ glyph1Display.LowLICContrastEnhancementFactor = 0.0
+ glyph1Display.HighLICContrastEnhancementFactor = 0.0
+ glyph1Display.LowColorContrastEnhancementFactor = 0.0
+ glyph1Display.HighColorContrastEnhancementFactor = 0.0
+ glyph1Display.AntiAlias = 0
+ glyph1Display.MaskOnSurface = 1
+ glyph1Display.MaskThreshold = 0.0
+ glyph1Display.MaskIntensity = 0.0
+ glyph1Display.MaskColor = [0.5, 0.5, 0.5]
+ glyph1Display.GenerateNoiseTexture = 0
+ glyph1Display.NoiseType = 'Gaussian'
+ glyph1Display.NoiseTextureSize = 128
+ glyph1Display.NoiseGrainSize = 2
+ glyph1Display.MinNoiseValue = 0.0
+ glyph1Display.MaxNoiseValue = 0.8
+ glyph1Display.NumberOfNoiseLevels = 1024
+ glyph1Display.ImpulseNoiseProbability = 1.0
+ glyph1Display.ImpulseNoiseBackgroundValue = 0.0
+ glyph1Display.NoiseGeneratorSeed = 1
+ glyph1Display.CompositeStrategy = 'AUTO'
+ glyph1Display.UseLICForLOD = 0
+ glyph1Display.WriteLog = ''
+
+ # init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+ glyph1Display.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+ glyph1Display.OSPRayScaleFunction.UseLogScale = 0
+
+ # init the 'Arrow' selected for 'GlyphType'
+ glyph1Display.GlyphType.TipResolution = 30
+ glyph1Display.GlyphType.TipRadius = 0.075
+ glyph1Display.GlyphType.TipLength = 0.35
+ glyph1Display.GlyphType.ShaftResolution = 30
+ glyph1Display.GlyphType.ShaftRadius = 0.015
+ glyph1Display.GlyphType.Invert = 0
+
+ # init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+ glyph1Display.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.0557803250849247, 1.0, 0.5, 0.0]
+ glyph1Display.ScaleTransferFunction.UseLogScale = 0
+
+ # init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+ glyph1Display.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.0557803250849247, 1.0, 0.5, 0.0]
+ glyph1Display.OpacityTransferFunction.UseLogScale = 0
+
+ # init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+ glyph1Display.DataAxesGrid.XTitle = 'X Axis'
+ glyph1Display.DataAxesGrid.YTitle = 'Y Axis'
+ glyph1Display.DataAxesGrid.ZTitle = 'Z Axis'
+ glyph1Display.DataAxesGrid.XTitleFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.XTitleFontFile = ''
+ glyph1Display.DataAxesGrid.XTitleBold = 0
+ glyph1Display.DataAxesGrid.XTitleItalic = 0
+ glyph1Display.DataAxesGrid.XTitleFontSize = 12
+ glyph1Display.DataAxesGrid.XTitleShadow = 0
+ glyph1Display.DataAxesGrid.XTitleOpacity = 1.0
+ glyph1Display.DataAxesGrid.YTitleFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.YTitleFontFile = ''
+ glyph1Display.DataAxesGrid.YTitleBold = 0
+ glyph1Display.DataAxesGrid.YTitleItalic = 0
+ glyph1Display.DataAxesGrid.YTitleFontSize = 12
+ glyph1Display.DataAxesGrid.YTitleShadow = 0
+ glyph1Display.DataAxesGrid.YTitleOpacity = 1.0
+ glyph1Display.DataAxesGrid.ZTitleFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.ZTitleFontFile = ''
+ glyph1Display.DataAxesGrid.ZTitleBold = 0
+ glyph1Display.DataAxesGrid.ZTitleItalic = 0
+ glyph1Display.DataAxesGrid.ZTitleFontSize = 12
+ glyph1Display.DataAxesGrid.ZTitleShadow = 0
+ glyph1Display.DataAxesGrid.ZTitleOpacity = 1.0
+ glyph1Display.DataAxesGrid.FacesToRender = 63
+ glyph1Display.DataAxesGrid.CullBackface = 0
+ glyph1Display.DataAxesGrid.CullFrontface = 1
+ glyph1Display.DataAxesGrid.ShowGrid = 0
+ glyph1Display.DataAxesGrid.ShowEdges = 1
+ glyph1Display.DataAxesGrid.ShowTicks = 1
+ glyph1Display.DataAxesGrid.LabelUniqueEdgesOnly = 1
+ glyph1Display.DataAxesGrid.AxesToLabel = 63
+ glyph1Display.DataAxesGrid.XLabelFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.XLabelFontFile = ''
+ glyph1Display.DataAxesGrid.XLabelBold = 0
+ glyph1Display.DataAxesGrid.XLabelItalic = 0
+ glyph1Display.DataAxesGrid.XLabelFontSize = 12
+ glyph1Display.DataAxesGrid.XLabelShadow = 0
+ glyph1Display.DataAxesGrid.XLabelOpacity = 1.0
+ glyph1Display.DataAxesGrid.YLabelFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.YLabelFontFile = ''
+ glyph1Display.DataAxesGrid.YLabelBold = 0
+ glyph1Display.DataAxesGrid.YLabelItalic = 0
+ glyph1Display.DataAxesGrid.YLabelFontSize = 12
+ glyph1Display.DataAxesGrid.YLabelShadow = 0
+ glyph1Display.DataAxesGrid.YLabelOpacity = 1.0
+ glyph1Display.DataAxesGrid.ZLabelFontFamily = 'Arial'
+ glyph1Display.DataAxesGrid.ZLabelFontFile = ''
+ glyph1Display.DataAxesGrid.ZLabelBold = 0
+ glyph1Display.DataAxesGrid.ZLabelItalic = 0
+ glyph1Display.DataAxesGrid.ZLabelFontSize = 12
+ glyph1Display.DataAxesGrid.ZLabelShadow = 0
+ glyph1Display.DataAxesGrid.ZLabelOpacity = 1.0
+ glyph1Display.DataAxesGrid.XAxisNotation = 'Mixed'
+ glyph1Display.DataAxesGrid.XAxisPrecision = 2
+ glyph1Display.DataAxesGrid.XAxisUseCustomLabels = 0
+ glyph1Display.DataAxesGrid.XAxisLabels = []
+ glyph1Display.DataAxesGrid.YAxisNotation = 'Mixed'
+ glyph1Display.DataAxesGrid.YAxisPrecision = 2
+ glyph1Display.DataAxesGrid.YAxisUseCustomLabels = 0
+ glyph1Display.DataAxesGrid.YAxisLabels = []
+ glyph1Display.DataAxesGrid.ZAxisNotation = 'Mixed'
+ glyph1Display.DataAxesGrid.ZAxisPrecision = 2
+ glyph1Display.DataAxesGrid.ZAxisUseCustomLabels = 0
+ glyph1Display.DataAxesGrid.ZAxisLabels = []
+ glyph1Display.DataAxesGrid.UseCustomBounds = 0
+ glyph1Display.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+ # init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+ glyph1Display.PolarAxes.Visibility = 0
+ glyph1Display.PolarAxes.Translation = [0.0, 0.0, 0.0]
+ glyph1Display.PolarAxes.Scale = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+ glyph1Display.PolarAxes.EnableCustomBounds = [0, 0, 0]
+ glyph1Display.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+ glyph1Display.PolarAxes.EnableCustomRange = 0
+ glyph1Display.PolarAxes.CustomRange = [0.0, 1.0]
+ glyph1Display.PolarAxes.PolarAxisVisibility = 1
+ glyph1Display.PolarAxes.RadialAxesVisibility = 1
+ glyph1Display.PolarAxes.DrawRadialGridlines = 1
+ glyph1Display.PolarAxes.PolarArcsVisibility = 1
+ glyph1Display.PolarAxes.DrawPolarArcsGridlines = 1
+ glyph1Display.PolarAxes.NumberOfRadialAxes = 0
+ glyph1Display.PolarAxes.AutoSubdividePolarAxis = 1
+ glyph1Display.PolarAxes.NumberOfPolarAxis = 0
+ glyph1Display.PolarAxes.MinimumRadius = 0.0
+ glyph1Display.PolarAxes.MinimumAngle = 0.0
+ glyph1Display.PolarAxes.MaximumAngle = 90.0
+ glyph1Display.PolarAxes.RadialAxesOriginToPolarAxis = 1
+ glyph1Display.PolarAxes.Ratio = 1.0
+ glyph1Display.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+ glyph1Display.PolarAxes.PolarAxisTitleVisibility = 1
+ glyph1Display.PolarAxes.PolarAxisTitle = 'Radial Distance'
+ glyph1Display.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+ glyph1Display.PolarAxes.PolarLabelVisibility = 1
+ glyph1Display.PolarAxes.PolarLabelFormat = '%-#6.3g'
+ glyph1Display.PolarAxes.PolarLabelExponentLocation = 'Labels'
+ glyph1Display.PolarAxes.RadialLabelVisibility = 1
+ glyph1Display.PolarAxes.RadialLabelFormat = '%-#3.1f'
+ glyph1Display.PolarAxes.RadialLabelLocation = 'Bottom'
+ glyph1Display.PolarAxes.RadialUnitsVisibility = 1
+ glyph1Display.PolarAxes.ScreenSize = 10.0
+ glyph1Display.PolarAxes.PolarAxisTitleOpacity = 1.0
+ glyph1Display.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+ glyph1Display.PolarAxes.PolarAxisTitleFontFile = ''
+ glyph1Display.PolarAxes.PolarAxisTitleBold = 0
+ glyph1Display.PolarAxes.PolarAxisTitleItalic = 0
+ glyph1Display.PolarAxes.PolarAxisTitleShadow = 0
+ glyph1Display.PolarAxes.PolarAxisTitleFontSize = 12
+ glyph1Display.PolarAxes.PolarAxisLabelOpacity = 1.0
+ glyph1Display.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+ glyph1Display.PolarAxes.PolarAxisLabelFontFile = ''
+ glyph1Display.PolarAxes.PolarAxisLabelBold = 0
+ glyph1Display.PolarAxes.PolarAxisLabelItalic = 0
+ glyph1Display.PolarAxes.PolarAxisLabelShadow = 0
+ glyph1Display.PolarAxes.PolarAxisLabelFontSize = 12
+ glyph1Display.PolarAxes.LastRadialAxisTextOpacity = 1.0
+ glyph1Display.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+ glyph1Display.PolarAxes.LastRadialAxisTextFontFile = ''
+ glyph1Display.PolarAxes.LastRadialAxisTextBold = 0
+ glyph1Display.PolarAxes.LastRadialAxisTextItalic = 0
+ glyph1Display.PolarAxes.LastRadialAxisTextShadow = 0
+ glyph1Display.PolarAxes.LastRadialAxisTextFontSize = 12
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextBold = 0
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextItalic = 0
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextShadow = 0
+ glyph1Display.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+ glyph1Display.PolarAxes.EnableDistanceLOD = 1
+ glyph1Display.PolarAxes.DistanceLODThreshold = 0.7
+ glyph1Display.PolarAxes.EnableViewAngleLOD = 1
+ glyph1Display.PolarAxes.ViewAngleLODThreshold = 0.7
+ glyph1Display.PolarAxes.SmallestVisiblePolarAngle = 0.5
+ glyph1Display.PolarAxes.PolarTicksVisibility = 1
+ glyph1Display.PolarAxes.ArcTicksOriginToPolarAxis = 1
+ glyph1Display.PolarAxes.TickLocation = 'Both'
+ glyph1Display.PolarAxes.AxisTickVisibility = 1
+ glyph1Display.PolarAxes.AxisMinorTickVisibility = 0
+ glyph1Display.PolarAxes.ArcTickVisibility = 1
+ glyph1Display.PolarAxes.ArcMinorTickVisibility = 0
+ glyph1Display.PolarAxes.DeltaAngleMajor = 10.0
+ glyph1Display.PolarAxes.DeltaAngleMinor = 5.0
+ glyph1Display.PolarAxes.PolarAxisMajorTickSize = 0.0
+ glyph1Display.PolarAxes.PolarAxisTickRatioSize = 0.3
+ glyph1Display.PolarAxes.PolarAxisMajorTickThickness = 1.0
+ glyph1Display.PolarAxes.PolarAxisTickRatioThickness = 0.5
+ glyph1Display.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+ glyph1Display.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+ glyph1Display.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+ glyph1Display.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+ glyph1Display.PolarAxes.ArcMajorTickSize = 0.0
+ glyph1Display.PolarAxes.ArcTickRatioSize = 0.3
+ glyph1Display.PolarAxes.ArcMajorTickThickness = 1.0
+ glyph1Display.PolarAxes.ArcTickRatioThickness = 0.5
+ glyph1Display.PolarAxes.Use2DMode = 0
+ glyph1Display.PolarAxes.UseLogAxis = 0
+
+ # show color bar/color legend
+ glyph1Display.SetScalarBarVisibility(renderView1, True)
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.0, 1.3513808010835129)
+
+ # Rescale transfer function
+ displacementduneVTKPWF.RescaleTransferFunction(0.0, 1.3513808010835127)
+
+ # Properties modified on glyph1
+ glyph1.Stride = 25
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.0, 1.3513808010835129)
+
+ # Properties modified on glyph1
+ glyph1.Stride = 30
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.0, 1.3513808010835129)
+
+ # Properties modified on glyph1
+ glyph1.Stride = 40
+
+ # update the view to ensure updated data information
+ renderView1.Update()
+
+ # Rescale transfer function
+ displacementduneVTKLUT.RescaleTransferFunction(0.0, 1.3513808010835129)
+
+ # turn off scalar coloring
+ ColorBy(glyph1Display, None)
+
+ # Hide the scalar bar for this color map if no visible data is colored by it.
+ HideScalarBarIfNotNeeded(isometryErrorFunctionLUT, renderView1)
+
+ # change solid color (Black)
+ # glyph1Display.AmbientColor = [0.0, 0.0, 0.0]
+ # glyph1Display.DiffuseColor = [0.0, 0.0, 0.0]
+
+ # change solid color (DarkBlue)
+ glyph1Display.AmbientColor = [0.0, 0.3333333333333333, 0.4980392156862745]
+ glyph1Display.DiffuseColor = [0.0, 0.3333333333333333, 0.4980392156862745]
+
+ # Properties modified on glyph1Display
+ glyph1Display.Opacity = 0.25
+
+ # Properties modified on glyph1Display
+ glyph1Display.Specular = 1.0
+
+ # Properties modified on glyph1Display
+ glyph1Display.Specular = 0.0
+
+ # Properties modified on glyph1Display
+ glyph1Display.Ambient = 0.2
+
+ #================================================================
+ # addendum: following script captures some of the application
+ # state to faithfully reproduce the visualization during playback
+ #================================================================
+
+ # get layout
+ layout1 = GetLayout()
+
+ print('layout1:',layout1)
+
+ #--------------------------------
+ # saving layout sizes for layouts
+
+ # layout/tab size in pixels
+ layout1.SetSize(1526, 873)
+
+ #-----------------------------------
+ # saving camera placements for views
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.5317894883522003, -7.950546149218976, 1.8355840818083122]
+ renderView1.CameraFocalPoint = [-0.3373855559365908, -2.646797497088115, 0.9959448222039734]
+ renderView1.CameraViewUp = [-0.0628645081836353, 0.15830147075535642, 0.9853875876869572]
+ renderView1.CameraViewAngle = 25.620465826651394
+ renderView1.CameraParallelScale = 1.3907168028548302
+
+
+
+ #Camera View:
+ # # get active view
+ # renderView1 = GetActiveViewOrCreate('RenderView')
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # # reset view to fit data bounds
+ # renderView1.ResetCamera(-1.0, 1.0257619619369507, -0.9359287619590759, 0.9359057545661926, -0.32227325439453125, 0.3284286856651306, True)
+
+ # # reset view to fit data bounds
+ # renderView1.ResetCamera(-1.0, 1.0257619619369507, -0.9359287619590759, 0.9359057545661926, -0.32227325439453125, 0.3284286856651306, False)
+
+ # # reset view to fit data bounds
+ # renderView1.ResetCamera(-1.0, 1.0257619619369507, -0.9359287619590759, 0.9359057545661926, -0.32227325439453125, 0.3284286856651306, False)
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+
+ # #================================================================
+ # # addendum: following script captures some of the application
+ # # state to faithfully reproduce the visualization during playback
+ # #================================================================
+
+ # # get layout
+ # layout1 = GetLayout()
+
+ # #--------------------------------
+ # # saving layout sizes for layouts
+
+ # # layout/tab size in pixels
+ # layout1.SetSize(1526, 873)
+
+ # #-----------------------------------
+ # # saving camera placements for views
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [-0.018803465136511217, -6.344229746084431, 0.8643549211317467]
+ # renderView1.CameraFocalPoint = [-0.012119019404053688, -0.0020669102668762207, 0.4409867525100708]
+ # renderView1.CameraViewUp = [-0.03973953847604448, 0.06659538567372057, 0.9969883769075141]
+ # renderView1.CameraViewAngle = 20.04581901489118
+ # renderView1.CameraParallelScale = 1.645126712646716
+
+
+ # # get active view
+ # renderView1 = GetActiveViewOrCreate('RenderView')
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.6190132298381256, -5.978102214366906, 2.4112112938696906]
+ # renderView1.CameraFocalPoint = [-0.012119019404053688, -2.568960189819349e-05, 0.45254665613174444]
+ # renderView1.CameraViewUp = [-0.05404025977722483, 0.305743653322491, 0.9505790176393684]
+ # renderView1.CameraViewAngle = 24.32226040473463
+ # renderView1.CameraParallelScale = 1.6363442723895476
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.3561670752092, -6.043235495365254, 2.2735558848687107]
+ # renderView1.CameraFocalPoint = [-0.012119019404053686, -2.568960189819236e-05, 0.4525466561317445]
+ # renderView1.CameraViewUp = [-0.05311946210744569, 0.28514078064511844, 0.9570125693837611]
+ # renderView1.CameraViewAngle = 24.32226040473463
+ # renderView1.CameraParallelScale = 1.6363442723895476
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.013021130832849942, -5.989702202981394, 2.4762159109807733]
+ # renderView1.CameraFocalPoint = [-0.01211901940405369, -2.5689601898192394e-05, 0.4525466561317443]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 24.32226040473463
+ # renderView1.CameraParallelScale = 1.6363442723895476
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.018300562382599708, -7.247534270791088, 2.9011864544990695]
+ # renderView1.CameraFocalPoint = [-0.01211901940405369, -2.5689601898192394e-05, 0.4525466561317443]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 24.32226040473463
+ # renderView1.CameraParallelScale = 1.6363442723895476
+
+ # # reset view to fit data bounds
+ # renderView1.ResetCamera(-1.0, 1.0257619619369507, -0.9359287619590759, 0.9359057545661926, -0.32227325439453125, 0.3284286856651306, True)
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.03465030801593522, -5.186584602883577, 1.7554108333598906]
+ # renderView1.CameraFocalPoint = [0.012880980968475342, -1.150369644165039e-05, 0.0030777156352996826]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 17.52577319587629
+ # renderView1.CameraParallelScale = 1.416941159547869
+
+ # # reset view to fit data
+ # renderView1.ResetCamera(True)
+ # # Adjust camera
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.013021130832849927, -5.98970220298139, 2.4762159109807724]
+ # renderView1.CameraFocalPoint = [-0.012119019404053688, -2.568960189819336e-05, 0.4525466561317444]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 24.4749904543719
+ # renderView1.CameraParallelScale = 1.6363442723895476
+
+ # #================================================================
+ # # addendum: following script captures some of the application
+ # # state to faithfully reproduce the visualization during playback
+ # #================================================================
+
+ # # get layout
+ # layout1 = GetLayout()
+
+ # #--------------------------------
+ # # saving layout sizes for layouts
+
+ # # layout/tab size in pixels
+ # layout1.SetSize(2634, 873)
+
+ # #-----------------------------------
+ # # saving camera placements for views
+
+ # # current camera placement for renderView1
+ # renderView1.CameraPosition = [0.013021130832849927, -5.98970220298139, 2.4762159109807724]
+ # renderView1.CameraFocalPoint = [-0.012119019404053688, -2.568960189819336e-05, 0.4525466561317444]
+ # renderView1.CameraViewUp = [-0.052765304975756634, 0.3194397242049962, 0.9461363988298154]
+ # renderView1.CameraViewAngle = 24.4749904543719
+ # renderView1.CameraParallelScale = 1.6363442723895476
+
+
+ # CAMERA ANGLE :
+ # get active view
+ renderView1 = GetActiveViewOrCreate('RenderView')
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.3406855662763682, -6.09404732570838, 2.3533248674216507]
+ renderView1.CameraFocalPoint = [-0.012119019404053686, 0.0024850368499755933, 0.4612774252891543]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 22.909507445589917
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.340685566276368, -6.094047325708376, 2.353324867421649]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975586, 0.46127742528915405]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.340685566276368, -6.094047325708376, 2.353324867421649]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975586, 0.46127742528915405]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.340685566276368, -6.094047325708376, 2.353324867421649]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975586, 0.46127742528915405]
+ renderView1.CameraViewUp = [-0.004294862018419483, 0.296610486207875, 0.9549888866535415]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ #================================================================
+ # addendum: following script captures some of the application
+ # state to faithfully reproduce the visualization during playback
+ #================================================================
+
+ # get layout
+ layout1 = GetLayout()
+
+ #--------------------------------
+ # saving layout sizes for layouts
+
+ # layout/tab size in pixels
+ layout1.SetSize(2634, 873)
+
+ #-----------------------------------
+ # saving camera placements for views
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [-0.2801298596202444, -6.068765481441859, 2.4420837460567193]
+ renderView1.CameraFocalPoint = [-0.012119019404053688, 0.002485036849975583, 0.4612774252891541]
+ renderView1.CameraViewUp = [-0.003588791982126036, 0.3103104941288703, 0.9506284856901804]
+ renderView1.CameraViewAngle = 23.253150057273768
+ renderView1.CameraParallelScale = 1.6543276528524797
+
+ #-----------------------------------------
+
+
+ # NEW CAMERA ANGLE
+ # get active view
+ renderView1 = GetActiveViewOrCreate('RenderView')
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [0.029912744310289893, -5.070841782883837, 2.2549998815448675]
+ renderView1.CameraFocalPoint = [-0.01429512538015842, -0.00023770332336425738, 0.013518139719963074]
+ renderView1.CameraViewUp = [-0.00012445946588129702, 0.4043111685224597, 0.9146214864728713]
+ renderView1.CameraViewAngle = 15.234822451317298
+ renderView1.CameraParallelScale = 1.434922768089897
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [0.13564184339304414, -5.002529762527205, 2.399270332667408]
+ renderView1.CameraFocalPoint = [-0.01429512538015842, -0.00023770332336425751, 0.013518139719963072]
+ renderView1.CameraViewUp = [-0.00025096931135483794, 0.4304728027354104, 0.9026035137974622]
+ renderView1.CameraViewAngle = 15.234822451317298
+ renderView1.CameraParallelScale = 1.434922768089897
+ # Adjust camera
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [0.1351322919568179, -4.837566763896823, 2.718169591018591]
+ renderView1.CameraFocalPoint = [-0.014295125380158416, -0.00023770332336425754, 0.013518139719963074]
+ renderView1.CameraViewUp = [-0.0025668859947288896, 0.4879570721064113, 0.8728638535749024]
+ renderView1.CameraViewAngle = 15.234822451317298
+ renderView1.CameraParallelScale = 1.434922768089897
+
+ #================================================================
+ # addendum: following script captures some of the application
+ # state to faithfully reproduce the visualization during playback
+ #================================================================
+
+ # get layout
+ layout1 = GetLayout()
+
+ #--------------------------------
+ # saving layout sizes for layouts
+
+ # layout/tab size in pixels
+ layout1.SetSize(2634, 873)
+
+ #-----------------------------------
+ # saving camera placements for views
+
+ # current camera placement for renderView1
+ renderView1.CameraPosition = [0.1351322919568179, -4.837566763896823, 2.718169591018591]
+ renderView1.CameraFocalPoint = [-0.014295125380158416, -0.00023770332336425754, 0.013518139719963074]
+ renderView1.CameraViewUp = [-0.0025668859947288896, 0.4879570721064113, 0.8728638535749024]
+ renderView1.CameraViewAngle = 15.234822451317298
+ renderView1.CameraParallelScale = 1.434922768089897
+ ###
+
+
+
+ # BIRDSVIEW:
+ # get active source.
+ warpByVector1 = GetActiveSource()
+
+ # get active view
+ renderView1 = GetActiveViewOrCreate('RenderView')
+
+ # hide data in view
+ Hide(warpByVector1, renderView1)
+
+ # find source
+ cylindrical_2variableBC_delta05_level3_NCvtu = FindSource('cylindrical_2variableBC_delta05_level3_NC.vtu')
+
+ # set active source
+ SetActiveSource(cylindrical_2variableBC_delta05_level3_NCvtu)
+
+ # show data in view
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay = Show(cylindrical_2variableBC_delta05_level3_NCvtu, renderView1, 'UnstructuredGridRepresentation')
+
+ # get 2D transfer function for 'DisplacementduneVTK'
+ displacementduneVTKTF2D = GetTransferFunction2D('DisplacementduneVTK')
+ displacementduneVTKTF2D.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ displacementduneVTKTF2D.Boxes = []
+ displacementduneVTKTF2D.ScalarRangeInitialized = 0
+ displacementduneVTKTF2D.Range = [0.0, 1.0, 0.0, 1.0]
+ displacementduneVTKTF2D.OutputDimensions = [10, 10]
+
+ # get color transfer function/color map for 'DisplacementduneVTK'
+ displacementduneVTKLUT = GetColorTransferFunction('DisplacementduneVTK')
+ displacementduneVTKLUT.AutomaticRescaleRangeMode = "Grow and update on 'Apply'"
+ displacementduneVTKLUT.InterpretValuesAsCategories = 0
+ displacementduneVTKLUT.AnnotationsInitialized = 0
+ displacementduneVTKLUT.ShowCategoricalColorsinDataRangeOnly = 0
+ displacementduneVTKLUT.RescaleOnVisibilityChange = 0
+ displacementduneVTKLUT.EnableOpacityMapping = 0
+ displacementduneVTKLUT.TransferFunction2D = displacementduneVTKTF2D
+ displacementduneVTKLUT.Use2DTransferFunction = 0
+ displacementduneVTKLUT.RGBPoints = [0.00013513808010835127, 0.0, 0.266667, 0.105882, 0.0002408561525676924, 0.0, 0.347374, 0.139346, 0.00042927712294860734, 0.000538, 0.427912, 0.172933, 0.0007651027177836129, 0.069435, 0.486967, 0.222145, 0.001363640039703789, 0.138178, 0.546082, 0.271326, 0.0024304111260643295, 0.197232, 0.609073, 0.31857, 0.0043317136998854795, 0.257255, 0.671742, 0.365859, 0.007720398979641159, 0.357647, 0.720953, 0.415071, 0.013760077649046323, 0.45767, 0.769919, 0.465021, 0.024524589381361806, 0.546251, 0.811257, 0.537855, 0.04371009442313549, 0.634295, 0.852211, 0.610688, 0.07790435651213874, 0.709097, 0.883706, 0.683522, 0.13884867657385053, 0.78316, 0.914833, 0.755894, 0.2474706759997296, 0.842215, 0.938454, 0.818885, 0.44106616615265487, 0.899977, 0.961538, 0.880692, 0.7861107670179635, 0.935409, 0.975317, 0.92203, 1.3513808010835129, 0.968627, 0.988235, 0.960784]
+ displacementduneVTKLUT.UseLogScale = 1
+ displacementduneVTKLUT.UseOpacityControlPointsFreehandDrawing = 0
+ displacementduneVTKLUT.ShowDataHistogram = 0
+ displacementduneVTKLUT.AutomaticDataHistogramComputation = 0
+ displacementduneVTKLUT.DataHistogramNumberOfBins = 10
+ displacementduneVTKLUT.ColorSpace = 'Lab'
+ displacementduneVTKLUT.UseBelowRangeColor = 0
+ displacementduneVTKLUT.BelowRangeColor = [0.0, 0.0, 0.0]
+ displacementduneVTKLUT.UseAboveRangeColor = 0
+ displacementduneVTKLUT.AboveRangeColor = [0.5, 0.5, 0.5]
+ displacementduneVTKLUT.NanColor = [1.0, 1.0, 0.0]
+ displacementduneVTKLUT.NanOpacity = 1.0
+ displacementduneVTKLUT.Discretize = 1
+ displacementduneVTKLUT.NumberOfTableValues = 256
+ displacementduneVTKLUT.ScalarRangeInitialized = 1.0
+ displacementduneVTKLUT.HSVWrap = 0
+ displacementduneVTKLUT.VectorComponent = 0
+ displacementduneVTKLUT.VectorMode = 'Magnitude'
+ displacementduneVTKLUT.AllowDuplicateScalars = 1
+ displacementduneVTKLUT.Annotations = []
+ displacementduneVTKLUT.ActiveAnnotatedValues = []
+ displacementduneVTKLUT.IndexedColors = []
+ displacementduneVTKLUT.IndexedOpacities = []
+
+ # get opacity transfer function/opacity map for 'DisplacementduneVTK'
+ displacementduneVTKPWF = GetOpacityTransferFunction('DisplacementduneVTK')
+ displacementduneVTKPWF.Points = [0.00013513808010835127, 0.0, 0.5, 0.0, 1.3513808010835127, 1.0, 0.5, 0.0]
+ displacementduneVTKPWF.AllowDuplicateScalars = 1
+ displacementduneVTKPWF.UseLogScale = 0
+ displacementduneVTKPWF.ScalarRangeInitialized = 1
+
+ # trace defaults for the display properties.
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Selection = None
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Representation = 'Surface'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ColorArrayName = ['POINTS', 'Displacement dune-VTK']
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.LookupTable = displacementduneVTKLUT
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MapScalars = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MultiComponentsMapping = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.InterpolateScalarsBeforeMapping = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Opacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PointSize = 2.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.LineWidth = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.RenderLinesAsTubes = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.RenderPointsAsSpheres = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Interpolation = 'Gouraud'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Specular = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SpecularColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SpecularPower = 100.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Luminosity = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Ambient = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Diffuse = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Roughness = 0.3
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Metallic = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.EdgeTint = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Anisotropy = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.AnisotropyRotation = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.BaseIOR = 1.5
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CoatStrength = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CoatIOR = 2.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CoatRoughness = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CoatColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectTCoordArray = 'None'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectNormalArray = 'None'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectTangentArray = 'None'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Texture = None
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.RepeatTextures = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.InterpolateTextures = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SeamlessU = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SeamlessV = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseMipmapTextures = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ShowTexturesOnBackface = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.BaseColorTexture = None
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NormalTexture = None
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NormalScale = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CoatNormalTexture = None
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CoatNormalScale = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MaterialTexture = None
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OcclusionStrength = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.AnisotropyTexture = None
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.EmissiveTexture = None
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.EmissiveFactor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.FlipTextures = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.BackfaceRepresentation = 'Follow Frontface'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.BackfaceAmbientColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.BackfaceOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Position = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Scale = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Orientation = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Origin = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CoordinateShiftScaleMethod = 'Always Auto Shift Scale'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Pickable = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Triangulate = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseShaderReplacements = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ShaderReplacements = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NonlinearSubdivisionLevel = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseDataPartitions = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OSPRayUseScaleArray = 'All Approximate'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OSPRayScaleArray = 'IsometryErrorFunction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OSPRayScaleFunction = 'PiecewiseFunction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OSPRayMaterial = 'None'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.BlockSelectors = ['/']
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.BlockColors = []
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.BlockOpacities = []
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Orient = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OrientationMode = 'Direction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectOrientationVectors = 'Displacement dune-VTK'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Scaling = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ScaleMode = 'No Data Scaling Off'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ScaleFactor = 0.2
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectScaleArray = 'IsometryErrorFunction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GlyphType = 'Arrow'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseGlyphTable = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GlyphTableIndexArray = 'IsometryErrorFunction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseCompositeGlyphTable = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseGlyphCullingAndLOD = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.LODValues = []
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ColorByLODIndex = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GaussianRadius = 0.01
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ShaderPreset = 'Sphere'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CustomTriangleScale = 3
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CustomShader = """ // This custom shader code define a gaussian blur
+ // Please take a look into vtkSMPointGaussianRepresentation.cxx
+ // for other custom shader examples
+ //VTK::Color::Impl
+ float dist2 = dot(offsetVCVSOutput.xy,offsetVCVSOutput.xy);
+ float gaussian = exp(-0.5*dist2);
+ opacity = opacity*gaussian;
+ """
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Emissive = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ScaleByArray = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SetScaleArray = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ScaleArrayComponent = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseScaleFunction = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ScaleTransferFunction = 'PiecewiseFunction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OpacityByArray = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OpacityArray = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OpacityArrayComponent = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OpacityTransferFunction = 'PiecewiseFunction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid = 'GridAxesRepresentation'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionCellLabelBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionCellLabelColor = [0.0, 1.0, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionCellLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionCellLabelFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionCellLabelFontSize = 18
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionCellLabelItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionCellLabelJustification = 'Left'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionCellLabelOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionCellLabelShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionPointLabelBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionPointLabelColor = [1.0, 1.0, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionPointLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionPointLabelFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionPointLabelFontSize = 18
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionPointLabelItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionPointLabelJustification = 'Left'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionPointLabelOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectionPointLabelShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes = 'PolarAxesRepresentation'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ScalarOpacityFunction = displacementduneVTKPWF
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ScalarOpacityUnitDistance = 0.22272467953508482
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseSeparateOpacityArray = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OpacityArrayName = ['POINTS', 'IsometryErrorFunction']
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OpacityComponent = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectMapper = 'Projected tetra'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SamplingDimensions = [128, 128, 128]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseFloatingPointFrameBuffer = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SelectInputVectors = ['POINTS', 'Displacement dune-VTK']
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NumberOfSteps = 40
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.StepSize = 0.25
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NormalizeVectors = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.EnhancedLIC = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ColorMode = 'Blend'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.LICIntensity = 0.8
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MapModeBias = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.EnhanceContrast = 'Off'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.LowLICContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.HighLICContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.LowColorContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.HighColorContrastEnhancementFactor = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.AntiAlias = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MaskOnSurface = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MaskThreshold = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MaskIntensity = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MaskColor = [0.5, 0.5, 0.5]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GenerateNoiseTexture = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NoiseType = 'Gaussian'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NoiseTextureSize = 128
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NoiseGrainSize = 2
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MinNoiseValue = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.MaxNoiseValue = 0.8
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NumberOfNoiseLevels = 1024
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ImpulseNoiseProbability = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ImpulseNoiseBackgroundValue = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NoiseGeneratorSeed = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.CompositeStrategy = 'AUTO'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.UseLICForLOD = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.WriteLog = ''
+
+ # init the 'PiecewiseFunction' selected for 'OSPRayScaleFunction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OSPRayScaleFunction.Points = [0.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OSPRayScaleFunction.UseLogScale = 0
+
+ # init the 'Arrow' selected for 'GlyphType'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GlyphType.TipResolution = 6
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GlyphType.TipRadius = 0.1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GlyphType.TipLength = 0.35
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GlyphType.ShaftResolution = 6
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GlyphType.ShaftRadius = 0.03
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.GlyphType.Invert = 0
+
+ # init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ScaleTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.ScaleTransferFunction.UseLogScale = 0
+
+ # init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OpacityTransferFunction.Points = [0.0, 0.0, 0.5, 0.0, 0.060643404722213745, 1.0, 0.5, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.OpacityTransferFunction.UseLogScale = 0
+
+ # init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XTitle = 'X Axis'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YTitle = 'Y Axis'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZTitle = 'Z Axis'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XTitleFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XTitleBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XTitleItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XTitleFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XTitleShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XTitleOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YTitleFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YTitleBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YTitleItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YTitleFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YTitleShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YTitleOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZTitleBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZTitleItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZTitleFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZTitleShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZTitleOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.FacesToRender = 63
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.CullBackface = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.CullFrontface = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ShowGrid = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ShowEdges = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ShowTicks = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.LabelUniqueEdgesOnly = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.AxesToLabel = 63
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XLabelFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XLabelBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XLabelItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XLabelFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XLabelShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XLabelOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YLabelFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YLabelBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YLabelItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YLabelFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YLabelShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YLabelOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZLabelBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZLabelItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZLabelFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZLabelShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZLabelOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XAxisNotation = 'Mixed'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XAxisPrecision = 2
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XAxisUseCustomLabels = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.XAxisLabels = []
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YAxisNotation = 'Mixed'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YAxisPrecision = 2
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YAxisUseCustomLabels = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.YAxisLabels = []
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZAxisNotation = 'Mixed'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZAxisPrecision = 2
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZAxisUseCustomLabels = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.ZAxisLabels = []
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.UseCustomBounds = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.DataAxesGrid.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+
+ # init the 'PolarAxesRepresentation' selected for 'PolarAxes'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.Visibility = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.Translation = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.Scale = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.Orientation = [0.0, 0.0, 0.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.EnableCustomBounds = [0, 0, 0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.CustomBounds = [0.0, 1.0, 0.0, 1.0, 0.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.EnableCustomRange = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.CustomRange = [0.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.RadialAxesVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.DrawRadialGridlines = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarArcsVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.DrawPolarArcsGridlines = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.NumberOfRadialAxes = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.AutoSubdividePolarAxis = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.NumberOfPolarAxis = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.MinimumRadius = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.MinimumAngle = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.MaximumAngle = 90.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.RadialAxesOriginToPolarAxis = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.Ratio = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarArcsColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SecondaryPolarArcsColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesColor = [1.0, 1.0, 1.0]
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitle = 'Radial Distance'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleLocation = 'Bottom'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarLabelVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarLabelFormat = '%-#6.3g'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarLabelExponentLocation = 'Labels'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.RadialLabelVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.RadialLabelFormat = '%-#3.1f'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.RadialLabelLocation = 'Bottom'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.RadialUnitsVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.ScreenSize = 10.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTitleFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisLabelFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTextFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextOpacity = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFamily = 'Arial'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontFile = ''
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextBold = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextItalic = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextShadow = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SecondaryRadialAxesTextFontSize = 12
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.EnableDistanceLOD = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.DistanceLODThreshold = 0.7
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.EnableViewAngleLOD = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.ViewAngleLODThreshold = 0.7
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.SmallestVisiblePolarAngle = 0.5
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarTicksVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.ArcTicksOriginToPolarAxis = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.TickLocation = 'Both'
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.AxisTickVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.AxisMinorTickVisibility = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.ArcTickVisibility = 1
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.ArcMinorTickVisibility = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.DeltaAngleMajor = 10.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.DeltaAngleMinor = 5.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisMajorTickSize = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTickRatioSize = 0.3
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisMajorTickThickness = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.PolarAxisTickRatioThickness = 0.5
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisMajorTickSize = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTickRatioSize = 0.3
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisMajorTickThickness = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.LastRadialAxisTickRatioThickness = 0.5
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.ArcMajorTickSize = 0.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.ArcTickRatioSize = 0.3
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.ArcMajorTickThickness = 1.0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.ArcTickRatioThickness = 0.5
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.Use2DMode = 0
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.PolarAxes.UseLogAxis = 0
+
+ # hide color bar/color legend
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.SetScalarBarVisibility(renderView1, False)
+
+ # Properties modified on cylindrical_2variableBC_delta05_level3_NCvtuDisplay
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.NonlinearSubdivisionLevel = 4
+
+ # Properties modified on cylindrical_2variableBC_delta05_level3_NCvtuDisplay
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.Ambient = 0.2
+
+ renderView1.ResetActiveCameraToPositiveZ()
+
+ # reset view to fit data
+ renderView1.ResetCamera(False)
+
+ renderView1.ResetActiveCameraToNegativeZ()
+
+ # reset view to fit data
+ renderView1.ResetCamera(False)
+
+ # reset view to fit data bounds
+ renderView1.ResetCamera(-1.0, 1.0, -1.0, 1.0, 0.0, 0.0, False)
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+
+ # Apply a preset using its name. Note this may not work as expected when presets have duplicate names.
+ displacementduneVTKLUT.ApplyPreset('Cool to Warm', True)
+
+ # set scalar coloring
+ ColorBy(cylindrical_2variableBC_delta05_level3_NCvtuDisplay, ('POINTS', 'Displacement dune-VTK', 'Z'))
+
+ # rescale color and/or opacity maps used to exactly fit the current data range
+ cylindrical_2variableBC_delta05_level3_NCvtuDisplay.RescaleTransferFunctionToDataRange(False, False)
+
+ # Update a scalar bar component title.
+ UpdateScalarBarsComponentTitle(displacementduneVTKLUT, cylindrical_2variableBC_delta05_level3_NCvtuDisplay)
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+
+
+
+
+
+
+ #TEST:Set Size in Pixels:
+ # layout/tab size in pixels
+ layout1.SetSize(750, 620)
+
+
+
+
+
+ # reset view to fit data
+ renderView1.ResetCamera(True)
+
+
+ # Write to pdf
+ # ExportView(outputName + '.pdf', view=renderView1)
+
+ # export view
+ ExportView(outputName + '.pdf', view=renderView1, Plottitle='ParaView GL2PS Export',
+ Compressoutputfile=0,
+ Drawbackground=1,
+ Cullhiddenprimitives=1,
+ Linewidthscalingfactor=0.714,
+ Pointsizescalingfactor=0.714,
+ GL2PSdepthsortmethod='Simple sorting (fast, good)',
+ Rasterize3Dgeometry=1,
+ Dontrasterizecubeaxes=1,
+ Rendertextaspaths=1)
+
+#================================================================
+# addendum: following script captures some of the application
+# state to faithfully reproduce the visualization during playback
+#================================================================
+
+ # get layout
+ layout1 = GetLayout()
+
+ #--------------------------------
+ # saving layout sizes for layouts
+
+ # layout/tab size in pixels
+ layout1.SetSize(750, 620)
+
+
+
+ # # get active view
+ # renderView1 = GetActiveViewOrCreate('RenderView')
+
+ # # get layout
+ # layout1 = GetLayout()
+
+ # # layout/tab size in pixels
+ # layout1.SetSize(2922, 908)
+
+ # # current camera placement for renderView1
+ # renderView1.InteractionMode = '2D'
+ # renderView1.CameraPosition = [-1.1764082767995223, -6.3731178885162665, 3.0455402693025344]
+ # renderView1.CameraFocalPoint = [1.75, 0.49948221910744905, 0.03305599093437195]
+ # renderView1.CameraViewUp = [0.12613103997492955, 0.35271102737899473, 0.9271924783560838]
+ # renderView1.CameraParallelScale = 1.3953474628479614
+
+ # save screenshot
+ SaveScreenshot(outputName + '.png', renderView1, ImageResolution=[1500, 1240],
+ FontScaling='Scale fonts proportionally',
+ OverrideColorPalette='WhiteBackground',
+ StereoMode='No change',
+ TransparentBackground=0,
+ # PNG options
+ CompressionLevel='5',
+ MetaData=['Application', 'ParaView'])
+
+ # # save screenshot
+ # SaveScreenshot(outputName + '.png', renderView1, ImageResolution=[5844, 1816],
+ # FontScaling='Scale fonts proportionally',
+ # OverrideColorPalette='WhiteBackground',
+ # StereoMode='No change',
+ # TransparentBackground=0,
+ # # PNG options
+ # CompressionLevel='5',
+ # MetaData=['Application', 'ParaView'])
diff --git a/experiment/macro-problem/variableBC/create_boundaryBox.py b/experiment/macro-problem/variableBC/create_boundaryBox.py
index 7b7724fdc9598f0cb641abc135fdb54a1f0008bb..1724a08fc23af4a10c822f1f23e8b5624385c640 100644
--- a/experiment/macro-problem/variableBC/create_boundaryBox.py
+++ b/experiment/macro-problem/variableBC/create_boundaryBox.py
@@ -1,28 +1,13 @@
-# trace generated using paraview version 5.10.0-RC1
-#import paraview
-#paraview.compatibility.major = 5
-#paraview.compatibility.minor = 10
-
#### import the simple module from the paraview
from paraview.simple import *
#### disable automatic camera reset on 'Show'
paraview.simple._DisableFirstRenderCameraReset()
+delta = 2.0
+
# create a new 'Box'
box1 = Box(registrationName='Box1')
-# find source
-warpByVector3 = FindSource('WarpByVector3')
-
-# find source
-warpByVector2 = FindSource('WarpByVector2')
-
-# find source
-cylindrical_2variableBC_delta01_level3_NCvtu = FindSource('cylindrical_2variableBC_delta0.1_level3_NC.vtu')
-
-# find source
-cylindrical_2variableBC_delta10_level3_NCvtu = FindSource('cylindrical_2variableBC_delta1.0_level3_NC.vtu')
-
# get active view
renderView1 = GetActiveViewOrCreate('RenderView')
@@ -52,19 +37,9 @@ box1Display.PolarAxes = 'PolarAxesRepresentation'
# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
box1Display.ScaleTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
-
# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
box1Display.OpacityTransferFunction.Points = [-1.0, 0.0, 0.5, 0.0, 1.0, 1.0, 0.5, 0.0]
-# find source
-warpByVector1 = FindSource('WarpByVector1')
-
-# find source
-cylindrical_2variableBC_delta05_level3_NCvtu = FindSource('cylindrical_2variableBC_delta0.5_level3_NC.vtu')
-
-# update the view to ensure updated data information
-renderView1.Update()
-
# Properties modified on box1
box1.XLength = 2.0
@@ -73,7 +48,7 @@ renderView1.Update()
# Properties modified on box1
box1.XLength = 0.1
-box1.YLength = 2.0
+box1.YLength = delta
box1.ZLength = 0.1
# update the view to ensure updated data information
@@ -88,37 +63,7 @@ box1Display.DataAxesGrid.Position = [-1.0, 0.0, 0.0]
# Properties modified on box1Display.PolarAxes
box1Display.PolarAxes.Translation = [-1.0, 0.0, 0.0]
-# Properties modified on box1
-box1.YLength = 1.0
-
# update the view to ensure updated data information
renderView1.Update()
-#================================================================
-# addendum: following script captures some of the application
-# state to faithfully reproduce the visualization during playback
-#================================================================
-
-# get layout
-layout1 = GetLayout()
-
-#--------------------------------
-# saving layout sizes for layouts
-
-# layout/tab size in pixels
-layout1.SetSize(2292, 1171)
-
-#-----------------------------------
-# saving camera placements for views
-
-# current camera placement for renderView1
-renderView1.InteractionMode = '2D'
-renderView1.CameraPosition = [3152.297535110951, -8555.241086160378, 4107.416501946229]
-renderView1.CameraFocalPoint = [-0.14072623447374652, -0.17247711115688338, -0.25121865343020566]
-renderView1.CameraViewUp = [-0.11249939664840285, 0.3960965825556926, 0.9112910528702928]
-renderView1.CameraParallelScale = 2.5053655927712435
-
-#--------------------------------------------
-# uncomment the following to render all views
-# RenderAllViews()
-# alternatively, if you want to write images, you can use SaveScreenshot(...).
\ No newline at end of file
+#-------------------------------------------------------------------------------
\ No newline at end of file
diff --git a/experiment/macro-problem/variableBC/cylindrical_2variableBC.py b/experiment/macro-problem/variableBC/cylindrical_2variableBC.py
index 84df30f4ee1fea543c03859a34d7f865dcbeeb3a..fdec935ec4108a3df0e8dc7e46d7ecbdabb2db7c 100644
--- a/experiment/macro-problem/variableBC/cylindrical_2variableBC.py
+++ b/experiment/macro-problem/variableBC/cylindrical_2variableBC.py
@@ -9,7 +9,6 @@ class ParameterSet(dict):
parameterSet = ParameterSet()
-
#############################################
# Paths
#############################################
@@ -17,8 +16,13 @@ parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/
# parameterSet.outputPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_buckling_experiment' # This is currently still used in prestrainedMaterial
parameterSet.baseName= 'cylindrical_2variableBC'
+
+"""
+ ----- MACRO-PROBLEM PARAMETERS: -----
+"""
+
#############################################
-# Grid parameters
+# Macro-Grid parameters
#############################################
nX=8
nY=8
@@ -29,7 +33,6 @@ parameterSet.upper = '1 1'
parameterSet.elements = str(nX)+' '+ str(nY)
parameterSet.macroGridLevel = 1
-
#############################################
# Options
#############################################
@@ -48,13 +51,16 @@ parameterSet.conforming_DiscreteJacobian = 0
# Tolerance of the multigrid solver
parameterSet.tolerance = 1e-12
# Maximum number of multigrid iterations
-parameterSet.maxProximalNewtonSteps = 100
+parameterSet.maxProximalNewtonSteps = 1000
# Initial regularization
parameterSet.initialRegularization = 2000
# parameterSet.initialRegularization = 1
# Measure convergence
parameterSet.instrumented = 0
+# parameterSet.regularizationNorm = 'Euclidean'
+parameterSet.regularizationNorm = 'H1semi'
+
# --- (optional) Riemannian Trust-region solver:
@@ -94,7 +100,7 @@ parameterSet.vtkwrite_analyticalSolution = 0
parameterSet.vtkWrite_analyticalSurfaceNormal = 0
# The grid can be refined several times for a higher resolution in the VTK-file.
-parameterSet.subsamplingRefinement = 2
+# parameterSet.subsamplingRefinement = 2
# Write Dof-Vector to .txt-file
parameterSet.writeDOFvector = 0
@@ -102,16 +108,19 @@ parameterSet.writeDOFvector = 0
#############################################
# Dirichlet boundary indicator
#############################################
+parameterSet.delta = 1.3
+print('parameterSet.delta:', parameterSet.delta)
+
def dirichlet_indicator(x) :
- delta = 0.75
- if( (x[0] < -0.99) and (abs(x[1]) <(delta/2.0) )):
+ # length of the clamped boundary-segment
+ delta = parameterSet.delta
+ print('delta:', delta)
+ # if( (x[0] < -0.99) and (abs(x[1]) <(delta/2.0) )):
+ if( (x[0] < -0.99) and (abs(x[1]) <=(delta/2.0) )):
return True
else:
return False
-
-
-
#############################################
# Microstructure
############################################
@@ -128,66 +137,8 @@ def df(x):
return ((1,0),
(0,1),
(0,0))
-# #Rotation:
-# def R(beta):
-# return [[math.cos(beta),0],
-# [0,1],
-# [-math.sin(beta),0]]
-
-
-# def f(x):
-# a = 0.5
-# if(x[0] <= 0.01):
-# return [x[0], x[1], 0]
-# elif(x[0] >= 3.99):
-# return [x[0] - a, x[1], 0]
-# else:
-# return [x[0], x[1], 0]
-
-
-# # beta = math.pi/4.0
-# beta= 0.05
-# # beta= math.pi/12.0
-# # beta= 0.10
-# # beta = 0
-
-# def df(x):
-# a = 0.5
-# if(x[0] <= 0.01):
-# # return R(-1.0*beta)
-# return R(beta)
-# elif(x[0] >= 3.99):
-# # return R(beta)
-# return R(-1.0*beta)
-# else:
-# return ((1,0),
-# (0,1),
-# (0,0))
-
-
-
-
-# def f(x):
-# # a = 0.4
-# a = 1.4
-# if(x[0] <= -1.99):
-# return [x[0] + a, x[1], 0]
-# elif(x[0] >= 1.99):
-# return [x[0] - a, x[1], 0]
-# else:
-# return [x[0], x[1], 0]
-
-
-# def df(x):
-# return ((1,0),
-# (0,1),
-# (0,0))
-
-
fdf = (f, df)
-
-
#############################################
# Force
############################################
@@ -196,25 +147,6 @@ parameterSet.assemble_force_term = False
def force(x):
return [0, 0, 0]
-
-
-#############################################
-# Analytical reference Solution
-#############################################
-# def f(x):
-# return [x[0], x[1], 0]
-#
-#
-# def df(x):
-# return ((1,0),
-# (0,1),
-# (0,0))
-#
-#
-# fdf = (f, df)
-
-
-
##################### MICROSCALE PROBLEM ####################
# parameterSet.prestrainFlag = True #deprecated
@@ -225,8 +157,6 @@ def force(x):
# parameterSet.read_effectiveQuantities_from_Parset = True
-
-parameterSet.printMicroOutput = False
parameterSet.VTKwriteMacroPhaseIndicator = True
parameterSet.MacroPhaseSubsamplingRefinement = 3
@@ -269,22 +199,36 @@ class GlobalMicrostructure:
# Represents the local microstructure in Phase 1
class LocalMicrostructure_1:
+
+ rho = 0.95
+ # rho = 0.75
+ # rho = 0.33
+
def __init__(self,macroPoint=[0,0]):
# self.macroPoint = macroPoint
self.gamma = 1.0 #in the future this might change depending on macroPoint.
-
self.phases = 3 #in the future this might change depending on macroPoint.
#--- Define different material phases:
+ # #- PHASE 1
+ # self.phase1_type="isotropic"
+ # self.materialParameters_phase1 = [200, 1.0]
+ # #- PHASE 2
+ # self.phase2_type="isotropic"
+ # self.materialParameters_phase2 = [200, 1.0]
+
+ # self.phase3_type="isotropic"
+ # self.materialParameters_phase3 = [100, 1.0] #(Matrix-material)
+ # # self.materialParameters_phase3 = [100, 0.1] #(Matrix-material)
+
#- PHASE 1
self.phase1_type="isotropic"
- self.materialParameters_phase1 = [200, 1.0]
+ self.materialParameters_phase1 = [28.7,22.5] # glass
#- PHASE 2
self.phase2_type="isotropic"
- self.materialParameters_phase2 = [200, 1.0]
-
+ self.materialParameters_phase2 = [28.7,22.5] # glass
+ #- PHASE 3
self.phase3_type="isotropic"
- self.materialParameters_phase3 = [100, 1.0] #(Matrix-material)
- # self.materialParameters_phase3 = [100, 0.1] #(Matrix-material)
+ self.materialParameters_phase3 = [1.2,2.58] #(Matrix-material: polystyrene
# Three-phase composite
def indicatorFunction(self,x):
@@ -298,27 +242,15 @@ class GlobalMicrostructure:
return 2 #Phase2
else :
return 3 #Phase3
-
- # Two-phase composite:
- def indicatorFunction(self,x):
- if (abs(x[0]) < (1.0/2.0) and x[2] >= 0 ):
- return 1 #Phase1
- else :
- return 2 #Phase2
- # elif (abs(x[1]) < (1.0/2.0) and x[2] < 0 ):
- # return 2 #Phase2
- # else :
- # return 3 #Phase3
+
# prestrained fibre in top layer , e2-aligned
def prestrain_phase1(self,x):
return [[1.0, 0, 0], [0,1.0,0], [0,0,1.0]]
-
# prestrained fibre in bottom layer , e1-aligned
def prestrain_phase2(self,x):
- rho = 0.5
- return [[rho*1.0, 0, 0], [0,rho*1.0,0], [0,0,rho*1.0]]
+ return [[self.rho*1.0, 0, 0], [0,self.rho*1.0,0], [0,0,self.rho*1.0]]
def prestrain_phase3(self,x):
return [[0, 0, 0], [0,0,0], [0,0,0]]
@@ -370,50 +302,49 @@ class GlobalMicrostructure:
# return [[0, 0, 0], [0,0,0], [0,0,0]]
-
-
+"""
+ ----- MICRO-PROBLEM PARAMETERS: -----
+"""
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
#############################################
-# Grid parameters
+# Micro-Grid parameters
#############################################
-parameterSet.microGridLevel = 3
+parameterSet.microGridLevel = 2 #5
+
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
-parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
+parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
# --- write effective quantities (Qhom.Beff) to .txt-files
-parameterSet.write_EffectiveQuantitiesToTxt = True
\ No newline at end of file
+parameterSet.write_EffectiveQuantitiesToTxt = True
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
\ No newline at end of file
diff --git a/experiment/macro-problem/variableBC/cylindrical_2variableBC_delta025.py b/experiment/macro-problem/variableBC/cylindrical_2variableBC_delta025.py
new file mode 100644
index 0000000000000000000000000000000000000000..1643bcb4fb8cc1abe597a1271cf434b7ddfb7c45
--- /dev/null
+++ b/experiment/macro-problem/variableBC/cylindrical_2variableBC_delta025.py
@@ -0,0 +1,11 @@
+from cylindrical_2variableBC import*
+
+
+def dirichlet_indicator(x) :
+ # length of the clamped boundary-segment
+ delta = 0.25
+ # if( (x[0] < -0.99) and (abs(x[1]) <(delta/2.0) )):
+ if( (x[0] < -0.99) and (abs(x[1]) <=(delta/2.0) )):
+ return True
+ else:
+ return False
diff --git a/experiment/macro-problem/variableBC/cylindrical_2variableBC_delta20.py b/experiment/macro-problem/variableBC/cylindrical_2variableBC_delta20.py
new file mode 100644
index 0000000000000000000000000000000000000000..b809c99c88d1665484932bf98ee0ae41328f7a6b
--- /dev/null
+++ b/experiment/macro-problem/variableBC/cylindrical_2variableBC_delta20.py
@@ -0,0 +1,11 @@
+from cylindrical_2variableBC import*
+
+
+def dirichlet_indicator(x) :
+ # length of the clamped boundary-segment
+ delta = 2.0
+ # if( (x[0] < -0.99) and (abs(x[1]) <(delta/2.0) )):
+ if( (x[0] < -0.99) and (abs(x[1]) <=(delta/2.0) )):
+ return True
+ else:
+ return False
diff --git a/experiment/micro-problem/ElasticModuliComputer.py b/experiment/micro-problem/ElasticModuliComputer.py
new file mode 100644
index 0000000000000000000000000000000000000000..2cf7cfefe64522e99b2dc5ec7f6da3a221f0f995
--- /dev/null
+++ b/experiment/micro-problem/ElasticModuliComputer.py
@@ -0,0 +1,124 @@
+import numpy as np
+
+# todo: write as functions ..
+
+
+
+def computeLameParameters(E,nu):
+ # Lamé first parameter (lambda)
+ lame_1 = (nu*E)/((1+nu)*(1-2*nu))
+ # Lamé second parameter (mu)
+ lame_2 = E/(2*(1+nu))
+ return [lame_1,lame_2]
+
+
+def computeElasticModuliFromLame(lame_1,lame_2):
+ E = (lame_2*(3*lame_1 + 2*lame_2))/(lame_1 + lame_2)
+ nu = lame_1/(2*(lame_1+lame_2))
+ return [E,nu]
+
+def computeModuliRatio(moduli_1,moduli_2):
+ ratio_1 = moduli_1[0]/moduli_2[0]
+ ratio_2 = moduli_1[1]/moduli_2[1]
+ return [ratio_1,ratio_2]
+
+
+"""
+ Parameters taken from [Zhang et al. - The near-isotropic elastic properties of interpenetrating composites reinforced by regular fibre-networks]
+ Composites often used in practice:
+ 1. SiC / Aluminium (matrix)
+ 2. Glass / Polystyrene (matrix)
+ 3. Glass / Epoxy (matrix)
+"""
+
+#1. MaterialName 2. Youngs Modulus, 3. Poisson ratio
+material = [ ['SiC', 410, 0.19],
+ ['Steel', 200, 0.28],
+ ['Aluminium', 74, 0.33],
+ ['Glass', 70, 0.22],
+ ['Polystyrene', 3.25, 0.34],
+ ['Epoxy', 3.0, 0.35],
+ ['Rubber', 0.1, 0.4999],
+ ['Glass_2(Wang)', 72, 0.26],
+ ['Epoxy_2(Wang)', 3.79, 0.37]
+ ]
+
+# # Young's modulus
+# # E = 3.14 #Polyethylene
+# E_Steel = 200 # Steel
+# E_SiC = 410 # Silicium Carbide
+# E_Alu = 74 # Aluminium (Computational results)
+# E_Glass = 70 # Glass
+# E_Polystyrene = 3.25 # Polystyrene
+# E_epoxy = 3.0 # Epoxy
+# # Poisson ratio
+# nu_SiC = 0.19 # Silicium Carbide
+# nu_Alu = 0.33 #Aluminium
+# nu_Glass = 0.22 #Glass
+# nu_Polystyrene = 0.34 #Polystyrene
+# nu_Epoxy = 0.35 # Epoxy
+
+for i in range(0, len(material)):
+ print('material ' + str(i) + ':', material[i][0] )
+ print('Lame parameters', computeLameParameters(material[i][1],material[i][2]))
+
+
+print('elastic moduli ratio Sic/Alu:', computeModuliRatio(computeLameParameters(material[0][1],material[0][2]),computeLameParameters(material[2][1],material[2][2])))
+print('elastic moduli ratio Glass/Polystyrene:', computeModuliRatio(computeLameParameters(material[3][1],material[3][2]),computeLameParameters(material[4][1],material[4][2])))
+print('elastic moduli ratio Glass/Epoxy:', computeModuliRatio(computeLameParameters(material[3][1],material[3][2]),computeLameParameters(material[5][1],material[5][2])))
+
+
+print('elastic moduli paper:', computeElasticModuliFromLame(1,100))
+print('elastic moduli paper:', computeElasticModuliFromLame(1,150))
+print('elastic moduli ratio paper',computeModuliRatio(computeElasticModuliFromLame(1,150),computeElasticModuliFromLame(1,100)))
+# print('Lame parameters of SiC:', computeLameParameters(E_SiC,nu_SiC))
+
+
+
+# Shear modulus / Lamé second parameter
+# mu = 0.117 #Polyethylene
+# mu = 79.3 # Steel
+
+# print('Youngs modulus:', E)
+# print('Shear modulus:', mu)
+
+
+# # Poisson ratio
+# nu_ = (E/(2*mu)) - 1
+
+# # Lamé first parameter
+# lambda_ = (nu_*E)/((1+nu_)*(1-2*nu_))
+
+
+
+# print('Lame parameter (nu):', nu_)
+# print('Lame parameter (lambda):', lambda_)
+
+
+# #TEST:
+# mu = 150
+# lambda_ =1
+
+# #Rumpf ~ E = 6, nu = 0.2
+# mu = 5.0/2.0
+# lambda_ = 5.0/3.0
+
+#----- Lamé parameters to Young/Shear modulus
+# E_b = (mu*(3*lambda_ + 2*mu))/(lambda_ + mu)
+# nu_b = lambda_/(2*(lambda_+mu))
+
+# print('E_ backwards', E_b)
+# print('nu_ backwards', nu_b)
+
+
+
+
+# # TEST (paper values)
+# E_1 = 200.99
+# nu_1 = 0.00495
+
+
+# E_2 = 300.99
+# nu_2 = 0.00331
+
+
diff --git a/experiment/micro-problem/MVM_infinitynorm_microproblem.py b/experiment/micro-problem/MVM_infinitynorm_microproblem.py
new file mode 100644
index 0000000000000000000000000000000000000000..c968c3c0dc9da970269ff1beedda22a0e9e2dc64
--- /dev/null
+++ b/experiment/micro-problem/MVM_infinitynorm_microproblem.py
@@ -0,0 +1,165 @@
+import math
+import numpy as np
+
+class ParameterSet(dict):
+ def __init__(self, *args, **kwargs):
+ super(ParameterSet, self).__init__(*args, **kwargs)
+ self.__dict__ = self
+
+parameterSet = ParameterSet()
+
+""""
+ Experiment: Microstructure with infinity distances (squares) from vertices
+ and RVE center but constant in one space direction.
+
+"""
+
+#############################################
+# Paths
+#############################################
+parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_buckling_microproblem'
+parameterSet.baseName= 'buckling_microproblem'
+
+##################### MICROSCALE PROBLEM ####################
+class Microstructure:
+ def __init__(self):
+ # self.macroPoint = macroPoint
+ self.gamma = 1.0 #in the future this might change depending on macroPoint.
+ self.phases = 2 #in the future this might change depending on macroPoint.
+ #--- Define different material phases:
+ #- PHASE 1
+ self.phase1_type="isotropic"
+ # self.materialParameters_phase1 = [200, 1.0]
+ self.materialParameters_phase1 = [28.7,22.5] # glass (Fibre)
+
+ #- PHASE 2
+ self.phase2_type="isotropic"
+ # self.materialParameters_phase2 = [100, 1.0]
+ self.materialParameters_phase2 = [1.2,2.58] #Matrix-material: polystyrene
+
+
+ self.theta = 0.2 # Distance from the nodes
+
+
+ def one_norm(self,v):
+ # r = 0
+ # for i in range(0, len(v)):
+ # r += np.abs(v[i])
+ # return r
+ return np.linalg.norm(v,1)
+
+ def two_norm(self,v):
+ # r = 0
+ # for i in range(0, len(v)):
+ # r += v[i]**2
+ # return np.sqrt(r)
+ return np.linalg.norm(v, 'fro') # frobenius-norm (default)
+
+
+ def infinity_norm(self,v):
+ # return np.abs(v).max()
+ return np.linalg.norm(v,np.inf) # Use already exisiting norm from numpy..
+
+
+ """
+ extract subarray from A with index i removed.
+ """
+ def subArray(self,v,i):
+ r = []
+ for j in range(0,len(v)):
+ if not (j == i):
+ r.append(v[j])
+
+ return np.array(r)
+
+
+
+ #--- Indicator function for material phases
+ def indicatorFunction(self,y):
+
+ # cast to numpy array
+ x = np.array(y)
+ # print('y:', y)
+
+ """
+ We assume constancy in one space-direction:
+ """
+ # constant in ...
+ # x = self.subArray(x,0) #y1-direction
+ # x = self.subArray(x,1) #y2-direction
+ x = self.subArray(x,2) #x3-direction
+ # print('y:', y)
+
+ # Dfine nodes (2D as we assume constanty in one direction)
+ node1 = [-0.5,-0.5]
+ node2 = [0.5,-0.5]
+ node3 = [-0.5,0.5]
+ node4 = [0.5,0.5]
+ center = [0,0]
+
+ indicator = (self.infinity_norm(x-node1) < self.theta) | (self.infinity_norm(x-node2) < self.theta) \
+ | (self.infinity_norm(x-node3) < self.theta) | (self.infinity_norm(x-node4) < self.theta) \
+ | (self.infinity_norm(x-center) < self.theta)
+
+
+ indicator = indicator & (y[2]>= 0)
+
+ if(indicator):
+ return 1 #Phase1
+ else :
+ return 2 #Phase2
+
+ #--- Define prestrain function for each phase
+ def prestrain_phase1(self,x):
+ rho = 1.0
+ return [[rho*1.0, 0, 0], [0,rho*1.0,0], [0,0,rho*1.0]]
+
+ def prestrain_phase2(self,x):
+ return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+#############################################
+# Grid parameters
+#############################################
+parameterSet.microGridLevel = 3
+
+#############################################
+# Assembly options
+#############################################
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
+
+#############################################
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
+#############################################
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
+
+#############################################
+# Write/Output options #(default=false)
+#############################################
+# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
+parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
+#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
+parameterSet.MaterialSubsamplingRefinement= 2
+# --- Write Correctos to VTK-File:
+parameterSet.writeCorrectorsVTK = 1
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 1 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
+
+
+
diff --git a/experiment/micro-problem/buckling_microproblem.py b/experiment/micro-problem/buckling_microproblem.py
index 446536ea5dddb241ea3f6c06767349c84f4c62c7..28d058a864c8b5e98e0973f824b0eb9799b502c8 100644
--- a/experiment/micro-problem/buckling_microproblem.py
+++ b/experiment/micro-problem/buckling_microproblem.py
@@ -24,7 +24,6 @@ parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/
parameterSet.baseName= 'buckling_microproblem'
##################### MICROSCALE PROBLEM ####################
-
class Microstructure:
def __init__(self):
# self.macroPoint = macroPoint
@@ -33,16 +32,20 @@ class Microstructure:
#--- Define different material phases:
#- PHASE 1
self.phase1_type="isotropic"
- self.materialParameters_phase1 = [200, 1.0]
+ # self.materialParameters_phase1 = [200, 1.0]
+ self.materialParameters_phase1 = [28.7,22.5] # glass (Fibre)
+
#- PHASE 2
self.phase2_type="isotropic"
- self.materialParameters_phase2 = [100, 1.0]
-
+ # self.materialParameters_phase2 = [100, 1.0]
+ self.materialParameters_phase2 = [1.2,2.58] #Matrix-material: polystyrene
#--- Indicator function for material phases
def indicatorFunction(self,x):
- fibreRadius = 0.2
- if (abs(x[0]) < fibreRadius and x[2] >= 0 ):
+ # fibreRadius = 0.1
+ fibreRadius = 0.25
+ # if (abs(x[0]) < fibreRadius and x[2] >= 0 ):
+ if (abs(x[1]) < fibreRadius and x[2] >= 0 ):
return 1 #Phase1
else :
return 2 #Phase2
@@ -56,7 +59,7 @@ class Microstructure:
return [[0, 0, 0], [0,0,0], [0,0,0]]
-
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
#############################################
# Grid parameters
@@ -66,17 +69,18 @@ parameterSet.microGridLevel = 4
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
@@ -85,23 +89,18 @@ parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for sol
parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
# --- write effective quantities (Qhom.Beff) to .txt-files
parameterSet.write_EffectiveQuantitiesToTxt = True
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
+
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/perforated_wood_upper.py b/experiment/micro-problem/compWood/perforated-bilayer/perforated_wood_upper.py
index 2c1f8381bda86844af5e9c9db11396d2a42cdf3e..46d4a4312c32d5c14115a93bcf618e813a0d43ca 100644
--- a/experiment/micro-problem/compWood/perforated-bilayer/perforated_wood_upper.py
+++ b/experiment/micro-problem/compWood/perforated-bilayer/perforated_wood_upper.py
@@ -69,9 +69,9 @@ parameterSet.Phases=3
# Parameters of the model
# -- (thickness upper layer) / (thickness)
# param_r = 0.22
-param_r = 0.12
+param_r = 0.49
# -- thickness [meter]
-param_h = 0.0047
+param_h = 0.008
# -- moisture content in the flat state [%]
param_omega_flat = 17.17547062
# -- moisture content in the target state [%]
@@ -80,7 +80,7 @@ param_omega_target = 8.959564147
param_theta = 0.0
# Design Parameter ratio between perforaton (cylindrical) volume and volume of upper layer
-param_beta = 0.0
+param_beta = 0.3
# Depth of perforation
# perfDepth = 0.12
# perfDepth = param_r
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/BMatrix.txt
deleted file mode 100644
index 6137c432727280d2dfa86fd721657aeb9a3c66f1..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.02691656716370883
-1 2 -0.576108730383210088
-1 3 2.03963883345130819e-29
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/QMatrix.txt
deleted file mode 100644
index 1534b2f63411bcda7d39fe9bba6dbfc3f37a9f36..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 344.448324198946295
-1 2 46.0309380450088881
-1 3 -1.8599861030914169e-29
-2 1 46.0309380450078862
-2 2 889.279295541113925
-2 3 4.12349304813084745e-29
-3 1 2.07158959089932232e-28
-3 2 6.15195762196629843e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/perforated_wood_lower_log.txt
deleted file mode 100644
index 0312883171aca42ba74cb4759d4f05da8ad6ebdd..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/0/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.192467 9.00929e-30 0
-9.00929e-30 0.00914117 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00914117 2.49611e-30 0
-2.49611e-30 0.053197 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.37629e-31 8.75336e-20 0
-8.75336e-20 1.55529e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-344.448 46.0309 -1.85999e-29
-46.0309 889.279 4.12349e-29
-2.07159e-28 6.15196e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1360.55 -326.959 5.3719e-27
-Beff_: 4.02692 -0.576109 2.03964e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=344.448
-q2=889.279
-q3=224.213
-q12=46.0309
-q13=-1.85999e-29
-q23=4.12349e-29
-q_onetwo=46.030938
-b1=4.026917
-b2=-0.576109
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.44448e+02 & 8.89279e+02 & 2.24213e+02 & 4.60309e+01 & -1.85999e-29 & 4.12349e-29 & 4.02692e+00 & -5.76109e-01 & 2.03964e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/BMatrix.txt
deleted file mode 100644
index 53933e8ac6cdbf8198a47dcc29523939faf99f5e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.03220960821014707
-1 2 -0.57899301528280267
-1 3 3.87469583876794542e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/QMatrix.txt
deleted file mode 100644
index 4c3e74f2425ee4251cdce53fb5dba3c4ac2cfe63..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 341.83041637042902
-1 2 45.7592918336055732
-1 3 6.30246511107586914e-17
-2 1 45.7592918336055803
-2 2 881.640271660192298
-2 3 1.19046245571855641e-17
-3 1 8.86270689744671734e-17
-3 2 3.46848345197611242e-17
-3 3 222.764482947247643
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/perforated_wood_lower_log.txt
deleted file mode 100644
index 6d23b7202d214bd4f6f0502d4c3ede135618a722..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/1/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.194024 9.29013e-20 0
-9.29013e-20 0.00918894 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0090968 -1.74666e-20 0
--1.74666e-20 0.0518476 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-3.02467e-20 -0.000995565 0
--0.000995565 5.05146e-21 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-341.83 45.7593 6.30247e-17
-45.7593 881.64 1.19046e-17
-8.86271e-17 3.46848e-17 222.764
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1351.84 -325.953 1.20043e-15
-Beff_: 4.03221 -0.578993 3.8747e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=341.83
-q2=881.64
-q3=222.764
-q12=45.7593
-q13=6.30247e-17
-q23=1.19046e-17
-q_onetwo=45.759292
-b1=4.032210
-b2=-0.578993
-b3=0.000000
-mu_gamma=222.764483
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.41830e+02 & 8.81640e+02 & 2.22764e+02 & 4.57593e+01 & 6.30247e-17 & 1.19046e-17 & 4.03221e+00 & -5.78993e-01 & 3.87470e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/BMatrix.txt
deleted file mode 100644
index 1cfb292da7b3f35c863bdfeffadedc319af856f8..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.04192623650617211
-1 2 -0.586174091360423644
-1 3 -7.24811870491674609e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/QMatrix.txt
deleted file mode 100644
index d502f6e9b88e1d25f215a711443292585d4a0593..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 337.282454261228338
-1 2 45.5269144900198199
-1 3 -7.07619794465715046e-17
-2 1 45.5269144900194789
-2 2 863.761709093920445
-2 3 -3.39968955358248628e-16
-3 1 -2.0273521834294865e-17
-3 2 -1.25148694440349248e-16
-3 3 219.834572890977029
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/perforated_wood_lower_log.txt
deleted file mode 100644
index 7ade1110cd8e27f595a9e02aa33f120baf87fb78..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/2/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.196742 -3.83847e-21 0
--3.83847e-21 0.00938185 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0087842 -2.20051e-20 0
--2.20051e-20 0.0484485 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.89255e-21 -0.00311244 0
--0.00311244 -2.37572e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-337.282 45.5269 -7.0762e-17
-45.5269 863.762 -3.39969e-16
--2.02735e-17 -1.25149e-16 219.835
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1336.58 -322.298 -1.60197e-15
-Beff_: 4.04193 -0.586174 -7.24812e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=337.282
-q2=863.762
-q3=219.835
-q12=45.5269
-q13=-7.0762e-17
-q23=-3.39969e-16
-q_onetwo=45.526914
-b1=4.041926
-b2=-0.586174
-b3=-0.000000
-mu_gamma=219.834573
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.37282e+02 & 8.63762e+02 & 2.19835e+02 & 4.55269e+01 & -7.07620e-17 & -3.39969e-16 & 4.04193e+00 & -5.86174e-01 & -7.24812e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/BMatrix.txt
deleted file mode 100644
index 8a84a45dde4a66b20cc77b8c574ae7e1a5d38ba3..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.0510966048893593
-1 2 -0.592799193287436799
-1 3 -1.27894493167162919e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/QMatrix.txt
deleted file mode 100644
index 181902373d83fcc8f9d8fa3225c602e43c351d46..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 333.129401873112613
-1 2 45.4664696489353162
-1 3 4.00456848671099097e-16
-2 1 45.4664696489350959
-2 2 848.052528549609065
-2 3 7.57850542303789565e-16
-3 1 4.67562186884373787e-19
-3 2 8.90829421066794379e-16
-3 3 217.016329559314272
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/perforated_wood_lower_log.txt
deleted file mode 100644
index ac56a197ffcbf14b0fd5bc75fc720983c8e7ec76..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/3/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.19923 2.70664e-19 0
-2.70664e-19 0.00960818 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00842772 4.46676e-19 0
-4.46676e-19 0.0452917 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.15583e-20 -0.00523522 0
--0.00523522 9.95678e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-333.129 45.4665 4.00457e-16
-45.4665 848.053 7.57851e-16
-4.67562e-19 8.90829e-16 217.016
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1322.59 -318.536 -3.30171e-15
-Beff_: 4.0511 -0.592799 -1.27894e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=333.129
-q2=848.053
-q3=217.016
-q12=45.4665
-q13=4.00457e-16
-q23=7.57851e-16
-q_onetwo=45.466470
-b1=4.051097
-b2=-0.592799
-b3=-0.000000
-mu_gamma=217.016330
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.33129e+02 & 8.48053e+02 & 2.17016e+02 & 4.54665e+01 & 4.00457e-16 & 7.57851e-16 & 4.05110e+00 & -5.92799e-01 & -1.27894e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/BMatrix.txt
deleted file mode 100644
index 84873de4c1702c281b222bc2f65c7917afe4d92e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.06213250662411784
-1 2 -0.600853091095135405
-1 3 -1.76581875274302341e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/QMatrix.txt
deleted file mode 100644
index 8342c937ddcadcdc2de1e497584dc00ce2ad9c10..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 328.21767735791525
-1 2 45.7178016487789165
-1 3 1.31289429198058749e-15
-2 1 45.7178016487785897
-2 2 830.689816984109711
-2 3 1.85496996723492208e-15
-3 1 8.90803374803666309e-16
-3 2 -4.52927786896424427e-16
-3 3 214.513694726799343
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/perforated_wood_lower_log.txt
deleted file mode 100644
index b378f820fe0563846e02cea024ff529d0181c56d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/4/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.202204 4.76658e-19 0
-4.76658e-19 0.00999719 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00787285 1.44137e-18 0
-1.44137e-18 0.0416783 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-5.30861e-19 -0.00714429 0
--0.00714429 -4.96051e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-328.218 45.7178 1.31289e-15
-45.7178 830.69 1.85497e-15
-8.90803e-16 -4.52928e-16 214.514
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1305.79 -313.411 3.51191e-15
-Beff_: 4.06213 -0.600853 -1.76582e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=328.218
-q2=830.69
-q3=214.514
-q12=45.7178
-q13=1.31289e-15
-q23=1.85497e-15
-q_onetwo=45.717802
-b1=4.062133
-b2=-0.600853
-b3=-0.000000
-mu_gamma=214.513695
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.28218e+02 & 8.30690e+02 & 2.14514e+02 & 4.57178e+01 & 1.31289e-15 & 1.85497e-15 & 4.06213e+00 & -6.00853e-01 & -1.76582e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/BMatrix.txt
deleted file mode 100644
index aa29196f4d717bcd6f7c8e2de6fb63da6ecbee1f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.07287843223964341
-1 2 -0.607469647844943061
-1 3 3.47293172159315383e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/QMatrix.txt
deleted file mode 100644
index 360769c9a67e969939fa90d943ec10d2a4918adb..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 323.402432382580912
-1 2 45.354332404498507
-1 3 4.66176440982665752e-16
-2 1 45.3543324044984004
-2 2 814.514553930954435
-2 3 3.51400935530866293e-16
-3 1 1.13632858005953408e-15
-3 2 9.79726587672317267e-16
-3 3 210.828881808632161
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/perforated_wood_lower_log.txt
deleted file mode 100644
index b018fb58c0b3068216c46a8b3b05917ae09bc8a4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/5/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.20509 3.8885e-19 0
-3.8885e-19 0.0101425 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00762404 2.66808e-19 0
-2.66808e-19 0.0382047 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-3.88905e-19 -0.0100947 0
--0.0100947 2.45295e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-323.402 45.3543 4.66176e-16
-45.3543 814.515 3.51401e-16
-1.13633e-15 9.79727e-16 210.829
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1289.63 -310.07 1.13549e-14
-Beff_: 4.07288 -0.60747 3.47293e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=323.402
-q2=814.515
-q3=210.829
-q12=45.3543
-q13=4.66176e-16
-q23=3.51401e-16
-q_onetwo=45.354332
-b1=4.072878
-b2=-0.607470
-b3=0.000000
-mu_gamma=210.828882
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.23402e+02 & 8.14515e+02 & 2.10829e+02 & 4.53543e+01 & 4.66176e-16 & 3.51401e-16 & 4.07288e+00 & -6.07470e-01 & 3.47293e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/BMatrix.txt
deleted file mode 100644
index 0f22405dded4516711b87d53c96c285763bc9a9e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.08102798827461033
-1 2 -0.613288405472155684
-1 3 1.63374360884752171e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/QMatrix.txt
deleted file mode 100644
index 77c61c4b5097243ef103403d5cf88a762f228102..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 319.901329194990751
-1 2 45.6480214365010895
-1 3 1.90502707331880947e-15
-2 1 45.648021436501061
-2 2 802.995915583982992
-2 3 3.3191519668916529e-15
-3 1 1.67252669369287107e-15
-3 2 1.69958219657759431e-15
-3 3 208.621458107481772
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/perforated_wood_lower_log.txt
deleted file mode 100644
index 29778657d24abfc007be5a3bf35ed36d6155f74d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_0/6/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.207228 1.95485e-18 0
-1.95485e-18 0.0104677 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00718107 2.31491e-18 0
-2.31491e-18 0.035673 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-6.92822e-19 -0.0118549 0
--0.0118549 9.82379e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-319.901 45.648 1.90503e-15
-45.648 802.996 3.31915e-15
-1.67253e-15 1.69958e-15 208.621
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1277.53 -306.177 9.19163e-15
-Beff_: 4.08103 -0.613288 1.63374e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=319.901
-q2=802.996
-q3=208.621
-q12=45.648
-q13=1.90503e-15
-q23=3.31915e-15
-q_onetwo=45.648021
-b1=4.081028
-b2=-0.613288
-b3=0.000000
-mu_gamma=208.621458
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.19901e+02 & 8.02996e+02 & 2.08621e+02 & 4.56480e+01 & 1.90503e-15 & 3.31915e-15 & 4.08103e+00 & -6.13288e-01 & 1.63374e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/BMatrix.txt
deleted file mode 100644
index 910cfcd016877f3d866c6eaf21b888ed5a6882e2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.15596094148045392
-1 2 -0.776402193757820269
-1 3 1.7703424517171586e-29
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/QMatrix.txt
deleted file mode 100644
index 2c5d3a2b37ab326494910bb78231fb135d60cb0f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 357.254344081100442
-1 2 42.7769003929809344
-1 3 -3.54062960976149439e-29
-2 1 42.7769003929807212
-2 2 790.334706977815472
-2 3 -2.1239155426702437e-30
-3 1 2.04724547529040308e-28
-3 2 5.65787579245127431e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/perforated_wood_lower_log.txt
deleted file mode 100644
index 2eb85621c635924c36e85dafcc2c2078d3c97e56..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/0/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.214567 9.80362e-30 0
-9.80362e-30 0.0106599 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0104814 2.4435e-30 0
-2.4435e-30 0.0717071 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.07707e-31 8.75336e-20 0
-8.75336e-20 1.54743e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-357.254 42.7769 -3.54063e-29
-42.7769 790.335 -2.12392e-30
-2.04725e-28 5.65788e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1451.52 -435.838 4.77623e-27
-Beff_: 4.15596 -0.776402 1.77034e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=357.254
-q2=790.335
-q3=224.213
-q12=42.7769
-q13=-3.54063e-29
-q23=-2.12392e-30
-q_onetwo=42.776900
-b1=4.155961
-b2=-0.776402
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.57254e+02 & 7.90335e+02 & 2.24213e+02 & 4.27769e+01 & -3.54063e-29 & -2.12392e-30 & 4.15596e+00 & -7.76402e-01 & 1.77034e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/BMatrix.txt
deleted file mode 100644
index 1f077dfe3da31925f5b56ce3aebaae18fd0483e8..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.16747086366115305
-1 2 -0.787908264368778033
-1 3 -4.37460529529542092e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/QMatrix.txt
deleted file mode 100644
index 78269e50188f1221e288e20324fee638d01e60e7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 350.319317619259664
-1 2 42.2688647672164777
-1 3 1.54207430245328903e-16
-2 1 42.2688647672159163
-2 2 770.507424566568261
-2 3 3.44517945801477848e-16
-3 1 1.12816106486563449e-16
-3 2 4.47586370661259207e-16
-3 3 220.28914689225067
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/perforated_wood_lower_log.txt
deleted file mode 100644
index 5bb7c8e9661a03a80296d89d3b4565c3a3e952e3..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/1/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.217968 2.0765e-19 0
-2.0765e-19 0.0108203 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0102482 1.05418e-19 0
-1.05418e-19 0.067367 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-4.40253e-20 -0.00297989 0
--0.00297989 7.28066e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-350.319 42.2689 1.54207e-16
-42.2689 770.507 3.44518e-16
-1.12816e-16 4.47586e-16 220.289
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1426.64 -430.935 -8.46177e-16
-Beff_: 4.16747 -0.787908 -4.37461e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=350.319
-q2=770.507
-q3=220.289
-q12=42.2689
-q13=1.54207e-16
-q23=3.44518e-16
-q_onetwo=42.268865
-b1=4.167471
-b2=-0.787908
-b3=-0.000000
-mu_gamma=220.289147
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.50319e+02 & 7.70507e+02 & 2.20289e+02 & 4.22689e+01 & 1.54207e-16 & 3.44518e-16 & 4.16747e+00 & -7.87908e-01 & -4.37461e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/BMatrix.txt
deleted file mode 100644
index ce6bf5648110b148f26fe564babe720e1d170967..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.17727072832930535
-1 2 -0.797892159648131316
-1 3 4.1301237300981938e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/QMatrix.txt
deleted file mode 100644
index 7498ece7be4874f0a31e7d97c2b6bbdcf1fa5197..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 344.883201764133844
-1 2 42.3473865811605918
-1 3 2.06460045728499436e-16
-2 1 42.3473865811604497
-2 2 754.881771804827849
-2 3 2.80793539597168698e-16
-3 1 2.00514245015688672e-16
-3 2 7.23904744030507818e-16
-3 3 217.121115659475748
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/perforated_wood_lower_log.txt
deleted file mode 100644
index 0f706e09e6a69ed7db9688339b3bd2e10874fe6b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/2/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.22065 2.00996e-19 0
-2.00996e-19 0.0111369 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00986091 4.6626e-20 0
-4.6626e-20 0.0637154 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-6.32571e-20 -0.00548097 0
--0.00548097 1.16374e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-344.883 42.3474 2.0646e-16
-42.3474 754.882 2.80794e-16
-2.00514e-16 7.23905e-16 217.121
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1406.88 -425.418 1.15674e-15
-Beff_: 4.17727 -0.797892 4.13012e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=344.883
-q2=754.882
-q3=217.121
-q12=42.3474
-q13=2.0646e-16
-q23=2.80794e-16
-q_onetwo=42.347387
-b1=4.177271
-b2=-0.797892
-b3=0.000000
-mu_gamma=217.121116
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.44883e+02 & 7.54882e+02 & 2.17121e+02 & 4.23474e+01 & 2.06460e-16 & 2.80794e-16 & 4.17727e+00 & -7.97892e-01 & 4.13012e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/BMatrix.txt
deleted file mode 100644
index c307e672fcaf5cf11b5a4fa8a94480ee3b4f434e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.19322740638802749
-1 2 -0.815291083271237005
-1 3 -4.62434020017104174e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/QMatrix.txt
deleted file mode 100644
index f3ff2b544a9234d957f57f1e506670bbe881c0ba..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 336.557374084184175
-1 2 43.0074654887870551
-1 3 1.30792983187673004e-15
-2 1 43.0074654887870551
-2 2 729.67799510550708
-2 3 9.50445505718683359e-16
-3 1 5.09702777459434674e-16
-3 2 8.45123060011809303e-16
-3 3 212.123863225977914
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/perforated_wood_lower_log.txt
deleted file mode 100644
index 975958d8017dc35894af12e6a568ecf4c511125a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/3/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.22479 1.16266e-18 0
-1.16266e-18 0.011866 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00899841 3.81537e-19 0
-3.81537e-19 0.0575174 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.46908e-19 -0.00954319 0
--0.00954319 7.33649e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-336.557 43.0075 1.30793e-15
-43.0075 729.678 9.50446e-16
-5.09703e-16 8.45123e-16 212.124
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1376.2 -414.56 4.67345e-16
-Beff_: 4.19323 -0.815291 -4.62434e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=336.557
-q2=729.678
-q3=212.124
-q12=43.0075
-q13=1.30793e-15
-q23=9.50446e-16
-q_onetwo=43.007465
-b1=4.193227
-b2=-0.815291
-b3=-0.000000
-mu_gamma=212.123863
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.36557e+02 & 7.29678e+02 & 2.12124e+02 & 4.30075e+01 & 1.30793e-15 & 9.50446e-16 & 4.19323e+00 & -8.15291e-01 & -4.62434e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/BMatrix.txt
deleted file mode 100644
index 82cb18514bcf124a51e9a52f0850ee13c852c337..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.20409317115905257
-1 2 -0.824066795212823444
-1 3 1.30882766567444831e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/QMatrix.txt
deleted file mode 100644
index 293777988da5f8cb8b7df8236a5626eeaae97948..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 330.485351953942939
-1 2 42.6372030389351551
-1 3 1.89715305504113349e-15
-2 1 42.6372030389351266
-2 2 715.848291505663724
-2 3 1.53457806087008847e-16
-3 1 1.31443451551605103e-15
-3 2 5.4174453831151736e-16
-3 3 208.781630065269923
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/perforated_wood_lower_log.txt
deleted file mode 100644
index b351765efecc63341baaa668ffdb1599fd06871d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/4/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.227788 1.98021e-18 0
-1.98021e-18 0.0120262 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00881008 -4.43055e-20 0
--4.43055e-20 0.0540886 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-5.63743e-19 -0.0123176 0
--0.0123176 6.74047e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-330.485 42.6372 1.89715e-15
-42.6372 715.848 1.53458e-16
-1.31443e-15 5.41745e-16 208.782
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1354.26 -410.656 7.81216e-15
-Beff_: 4.20409 -0.824067 1.30883e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=330.485
-q2=715.848
-q3=208.782
-q12=42.6372
-q13=1.89715e-15
-q23=1.53458e-16
-q_onetwo=42.637203
-b1=4.204093
-b2=-0.824067
-b3=0.000000
-mu_gamma=208.781630
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.30485e+02 & 7.15848e+02 & 2.08782e+02 & 4.26372e+01 & 1.89715e-15 & 1.53458e-16 & 4.20409e+00 & -8.24067e-01 & 1.30883e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/BMatrix.txt
deleted file mode 100644
index c703e944fc66951d224cae1ed5c1f78242b68042..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.21657987985527871
-1 2 -0.833795656851315847
-1 3 -3.57357798101385084e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/QMatrix.txt
deleted file mode 100644
index 7d1c29f0da1efcbd29c96ca40777c83afbe0909f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 323.591225430740565
-1 2 41.9617675119484517
-1 3 1.31211925683384981e-15
-2 1 41.9617675119482101
-2 2 700.20700851681886
-2 3 3.26024675464074709e-15
-3 1 5.88216312748354904e-16
-3 2 2.73355584468651077e-15
-3 3 204.353098695254914
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/perforated_wood_lower_log.txt
deleted file mode 100644
index b7376cfa2696e10b6212ad94a6715502c911d267..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/5/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.231186 1.44451e-18 0
-1.44451e-18 0.0120991 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00869934 2.07143e-18 0
-2.07143e-18 0.0500877 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.20169e-19 -0.0160681 0
--0.0160681 1.21238e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-323.591 41.9618 1.31212e-15
-41.9618 700.207 3.26025e-15
-5.88216e-16 2.73356e-15 204.353
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1329.46 -406.894 -7.10168e-15
-Beff_: 4.21658 -0.833796 -3.57358e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=323.591
-q2=700.207
-q3=204.353
-q12=41.9618
-q13=1.31212e-15
-q23=3.26025e-15
-q_onetwo=41.961768
-b1=4.216580
-b2=-0.833796
-b3=-0.000000
-mu_gamma=204.353099
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.23591e+02 & 7.00207e+02 & 2.04353e+02 & 4.19618e+01 & 1.31212e-15 & 3.26025e-15 & 4.21658e+00 & -8.33796e-01 & -3.57358e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/BMatrix.txt
deleted file mode 100644
index 5cd411ab74f9a2783a0ef185766da24f18b22107..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.23112307756473705
-1 2 -0.845475233201549936
-1 3 -3.48722926218938752e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/QMatrix.txt
deleted file mode 100644
index a26c6a02e67067ac86451fc637eee37a78c9f946..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 315.851642515818298
-1 2 41.4100179913812454
-1 3 2.92177408298382318e-15
-2 1 41.4100179913806414
-2 2 682.59687770089954
-2 3 2.55132761163394395e-15
-3 1 9.38393073912201919e-16
-3 2 3.54651964449458545e-15
-3 3 199.508657961051227
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/perforated_wood_lower_log.txt
deleted file mode 100644
index c1e929931c862ca032d7ae6ad30369f90ab30650..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_1/6/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.235023 3.00607e-18 0
-3.00607e-18 0.0122714 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00848705 2.48771e-18 0
-2.48771e-18 0.0454293 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-5.03289e-19 -0.0202436 0
--0.0202436 7.54728e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-315.852 41.41 2.92177e-15
-41.41 682.597 2.55133e-15
-9.38393e-16 3.54652e-15 199.509
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1301.4 -401.908 -5.98536e-15
-Beff_: 4.23112 -0.845475 -3.48723e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=315.852
-q2=682.597
-q3=199.509
-q12=41.41
-q13=2.92177e-15
-q23=2.55133e-15
-q_onetwo=41.410018
-b1=4.231123
-b2=-0.845475
-b3=-0.000000
-mu_gamma=199.508658
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.15852e+02 & 6.82597e+02 & 1.99509e+02 & 4.14100e+01 & 2.92177e-15 & 2.55133e-15 & 4.23112e+00 & -8.45475e-01 & -3.48723e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/BMatrix.txt
deleted file mode 100644
index be8657c5a7c7ec0fdcf0db4b7caa753e557a9c73..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.03873445069710524
-1 2 -1.05995320800370529
-1 3 1.36076669459033724e-29
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/QMatrix.txt
deleted file mode 100644
index 655f1ff64c6cb9651d8618f4c60a9a720c897fe2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 362.077597710087787
-1 2 38.6653780788820356
-1 3 7.65965450042136346e-29
-2 1 38.6653780788812682
-2 2 673.576799924798138
-2 3 2.35949529346769039e-29
-3 1 1.91929433331978192e-28
-3 2 5.49556981433154364e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/perforated_wood_lower_log.txt
deleted file mode 100644
index 23e4ac9988a480ac380211e83f971bdf72e55340..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/0/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.228051 8.83488e-30 0
-8.83488e-30 0.0120825 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0119521 2.30937e-30 0
-2.30937e-30 0.0967075 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-7.67493e-32 8.75336e-20 0
-8.75336e-20 1.40158e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-362.078 38.6654 7.65965e-29
-38.6654 673.577 2.3595e-29
-1.91929e-28 5.49557e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1421.35 -557.801 3.76792e-27
-Beff_: 4.03873 -1.05995 1.36077e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=362.078
-q2=673.577
-q3=224.213
-q12=38.6654
-q13=7.65965e-29
-q23=2.3595e-29
-q_onetwo=38.665378
-b1=4.038734
-b2=-1.059953
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.62078e+02 & 6.73577e+02 & 2.24213e+02 & 3.86654e+01 & 7.65965e-29 & 2.35950e-29 & 4.03873e+00 & -1.05995e+00 & 1.36077e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/BMatrix.txt
deleted file mode 100644
index cfc89d36215f35995f2970f5813244a911a80feb..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.04999007563965829
-1 2 -1.08093307893877499
-1 3 -7.6171819283678007e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/QMatrix.txt
deleted file mode 100644
index 0fa1530f2c2e9db4d492d2279f067adc61f789ac..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 352.070772869657958
-1 2 38.3755898253089001
-1 3 4.91537030939933131e-16
-2 1 38.3755898253085377
-2 2 651.985363682309867
-2 3 5.01316026315984029e-16
-3 1 3.56474133489327518e-16
-3 2 -1.48215042720419151e-16
-3 3 219.115897677100861
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/perforated_wood_lower_log.txt
deleted file mode 100644
index 127f05d56723ca378a9716eeea165d9cf2449b55..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/1/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.23203 5.00488e-19 0
-5.00488e-19 0.0124378 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.011597 2.63189e-19 0
-2.63189e-19 0.0911294 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.27388e-19 -0.00402529 0
--0.00402529 -1.66064e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-352.071 38.3756 4.91537e-16
-38.3756 651.985 5.01316e-16
-3.56474e-16 -1.48215e-16 219.116
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1384.4 -549.332 -6.51184e-17
-Beff_: 4.04999 -1.08093 -7.61718e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=352.071
-q2=651.985
-q3=219.116
-q12=38.3756
-q13=4.91537e-16
-q23=5.01316e-16
-q_onetwo=38.375590
-b1=4.049990
-b2=-1.080933
-b3=-0.000000
-mu_gamma=219.115898
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.52071e+02 & 6.51985e+02 & 2.19116e+02 & 3.83756e+01 & 4.91537e-16 & 5.01316e-16 & 4.04999e+00 & -1.08093e+00 & -7.61718e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/BMatrix.txt
deleted file mode 100644
index 6fb1e0b1cc53d661cbf3a14b257927d272ee872a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.06569482979447194
-1 2 -1.11069937965733834
-1 3 -8.81203681641755608e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/QMatrix.txt
deleted file mode 100644
index dbfd83b76ab8a0bafac017305d42ab7f89cdeb07..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 340.447245262669469
-1 2 38.9900921055484488
-1 3 9.98984305244617413e-16
-2 1 38.9900921055476744
-2 2 623.427813598986177
-2 3 1.46048681842433394e-15
-3 1 7.89492093323184395e-16
-3 2 1.09986105882315787e-15
-3 3 212.168284823904514
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/perforated_wood_lower_log.txt
deleted file mode 100644
index 79fdc6d74e8feb4767e342ce5ee6b191748ab4ac..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/2/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.236673 1.10305e-18 0
-1.10305e-18 0.0133219 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0107483 8.82359e-19 0
-8.82359e-19 0.0829747 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.90047e-19 -0.00974864 0
--0.00974864 2.92401e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-340.447 38.9901 9.98984e-16
-38.9901 623.428 1.46049e-15
-7.89492e-16 1.09986e-15 212.168
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1340.85 -533.919 1.18584e-16
-Beff_: 4.06569 -1.1107 -8.81204e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=340.447
-q2=623.428
-q3=212.168
-q12=38.9901
-q13=9.98984e-16
-q23=1.46049e-15
-q_onetwo=38.990092
-b1=4.065695
-b2=-1.110699
-b3=-0.000000
-mu_gamma=212.168285
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.40447e+02 & 6.23428e+02 & 2.12168e+02 & 3.89901e+01 & 9.98984e-16 & 1.46049e-15 & 4.06569e+00 & -1.11070e+00 & -8.81204e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/BMatrix.txt
deleted file mode 100644
index 05556a474c9c2ca562a447b76a86fadece581f95..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.07522521316911224
-1 2 -1.12490731268905186
-1 3 -5.60557530105352452e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/QMatrix.txt
deleted file mode 100644
index 00529def5dc54a40e97fb61edae29aba70975998..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 331.879414845983206
-1 2 38.0845052426550126
-1 3 2.85464841597981439e-15
-2 1 38.0845052426548492
-2 2 608.896465572778993
-2 3 1.46121653730839351e-17
-3 1 2.45055229025083719e-15
-3 2 1.70718114090564945e-15
-3 3 207.252566029754433
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/perforated_wood_lower_log.txt
deleted file mode 100644
index e686481643636c62aef1014f046c31e6f3fde1c2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/3/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.240067 2.29917e-18 0
-2.29917e-18 0.0132941 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0107149 3.0661e-20 0
-3.0661e-20 0.0788311 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-6.45753e-19 -0.0138948 0
--0.0138948 7.62571e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-331.879 38.0845 2.85465e-15
-38.0845 608.896 1.46122e-17
-2.45055e-15 1.70718e-15 207.253
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1309.64 -529.749 6.90436e-15
-Beff_: 4.07523 -1.12491 -5.60558e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=331.879
-q2=608.896
-q3=207.253
-q12=38.0845
-q13=2.85465e-15
-q23=1.46122e-17
-q_onetwo=38.084505
-b1=4.075225
-b2=-1.124907
-b3=-0.000000
-mu_gamma=207.252566
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.31879e+02 & 6.08896e+02 & 2.07253e+02 & 3.80845e+01 & 2.85465e-15 & 1.46122e-17 & 4.07523e+00 & -1.12491e+00 & -5.60558e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/BMatrix.txt
deleted file mode 100644
index 74b8a5d704c867f74a0c6ffa8c27e008cefe27fc..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.08391953036553446
-1 2 -1.13712862436162232
-1 3 -3.22492018316077058e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/QMatrix.txt
deleted file mode 100644
index 804f67f00929efcc31e93a2d5c9f86929a9dc453..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 324.258487924717656
-1 2 36.9759022876518699
-1 3 8.71286888665979975e-16
-2 1 36.9759022876519978
-2 2 596.282689315279072
-2 3 1.06255624551842079e-16
-3 1 1.09839336248380298e-15
-3 2 2.4915950599518075e-15
-3 3 201.223021216891823
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/perforated_wood_lower_log.txt
deleted file mode 100644
index 74de42e764c7a4da4bfb9e3fe4058fce5827469b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/4/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.243068 7.49364e-19 0
-7.49364e-19 0.0131093 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0107975 1.22099e-20 0
-1.22099e-20 0.0751146 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-3.75858e-19 -0.019107 0
--0.019107 5.97949e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-324.258 36.9759 8.71287e-16
-36.9759 596.283 1.06256e-16
-1.09839e-15 2.4916e-15 201.223
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1282.2 -527.044 1.00356e-15
-Beff_: 4.08392 -1.13713 -3.22492e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=324.258
-q2=596.283
-q3=201.223
-q12=36.9759
-q13=8.71287e-16
-q23=1.06256e-16
-q_onetwo=36.975902
-b1=4.083920
-b2=-1.137129
-b3=-0.000000
-mu_gamma=201.223021
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.24258e+02 & 5.96283e+02 & 2.01223e+02 & 3.69759e+01 & 8.71287e-16 & 1.06256e-16 & 4.08392e+00 & -1.13713e+00 & -3.22492e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/BMatrix.txt
deleted file mode 100644
index 453b31666ce628f1609bf2da1c2650dc0455ccd3..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.0995890348852857
-1 2 -1.16321704880237808
-1 3 2.3980641859732622e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/QMatrix.txt
deleted file mode 100644
index 314647c63944302d55350e16a22ff88d26f6fb0e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 312.854491459566361
-1 2 36.8999891191427025
-1 3 4.81830287474283026e-15
-2 1 36.8999891191426741
-2 2 573.051681988519476
-2 3 6.92613250552389509e-15
-3 1 4.46786713325536024e-15
-3 2 5.5546311568898353e-15
-3 3 194.421949041239856
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/perforated_wood_lower_log.txt
deleted file mode 100644
index 7af06d4743daa329a98e661b63416925bed882e0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/5/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.247636 4.9213e-18 0
-4.9213e-18 0.0136516 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0102666 5.91604e-18 0
-5.91604e-18 0.067768 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.34007e-18 -0.0250186 0
--0.0250186 1.54394e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-312.854 36.9 4.8183e-15
-36.9 573.052 6.92613e-15
-4.46787e-15 5.55463e-15 194.422
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1239.65 -515.309 1.65175e-14
-Beff_: 4.09959 -1.16322 2.39806e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=312.854
-q2=573.052
-q3=194.422
-q12=36.9
-q13=4.8183e-15
-q23=6.92613e-15
-q_onetwo=36.899989
-b1=4.099589
-b2=-1.163217
-b3=0.000000
-mu_gamma=194.421949
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.12854e+02 & 5.73052e+02 & 1.94422e+02 & 3.69000e+01 & 4.81830e-15 & 6.92613e-15 & 4.09959e+00 & -1.16322e+00 & 2.39806e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/BMatrix.txt
deleted file mode 100644
index 59ae65e6430d2a22d81b75cd0f1d8f169d2677bd..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.10987377483157346
-1 2 -1.17735571055468613
-1 3 1.4162292737214143e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/QMatrix.txt
deleted file mode 100644
index efbf744dd2348b835990b72146c17051224d0154..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 304.292427642370228
-1 2 35.8259334588520275
-1 3 6.14487759585452195e-15
-2 1 35.8259334588520062
-2 2 559.888769051529607
-2 3 2.29185685593448138e-15
-3 1 5.43392303267546672e-15
-3 2 -3.1505559879713152e-16
-3 3 188.472903784859085
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/perforated_wood_lower_log.txt
deleted file mode 100644
index 8ccb9c1c677f3773f51e7fea047412a72976c044..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_2/6/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.251043 5.27593e-18 0
-5.27593e-18 0.0135199 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0103203 1.73829e-18 0
-1.73829e-18 0.0636326 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.05042e-18 -0.0303056 0
--0.0303056 -5.04844e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-304.292 35.8259 6.14488e-15
-35.8259 559.889 2.29186e-15
-5.43392e-15 -3.15056e-16 188.473
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1208.42 -511.948 2.53729e-14
-Beff_: 4.10987 -1.17736 1.41623e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=304.292
-q2=559.889
-q3=188.473
-q12=35.8259
-q13=6.14488e-15
-q23=2.29186e-15
-q_onetwo=35.825933
-b1=4.109874
-b2=-1.177356
-b3=0.000000
-mu_gamma=188.472904
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.04292e+02 & 5.59889e+02 & 1.88473e+02 & 3.58259e+01 & 6.14488e-15 & 2.29186e-15 & 4.10987e+00 & -1.17736e+00 & 1.41623e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/BMatrix.txt
deleted file mode 100644
index 29f046f95765f89baf0b3926693da51f9fa1cd71..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.38385954774598163
-1 2 -1.4580752040276912
-1 3 6.56599696043288159e-30
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/QMatrix.txt
deleted file mode 100644
index e37cbac73f60b005f3262687867e554af818225a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 362.884400627699449
-1 2 33.598217280456808
-1 3 2.66764408456964812e-29
-2 1 33.5982172804586838
-2 2 535.044060612796784
-2 3 -9.76610185849601493e-30
-3 1 1.41209476925862098e-28
-3 2 5.2699761983748409e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/perforated_wood_lower_log.txt
deleted file mode 100644
index a196c459b6f8346156aaddc6c15a94da6e9864e4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/0/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.226315 4.74252e-30 0
-4.74252e-30 0.0133775 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0133074 2.25105e-30 0
-2.25105e-30 0.133677 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-3.78604e-32 8.75336e-20 0
-8.75336e-20 8.16086e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-362.884 33.5982 2.66764e-29
-33.5982 535.044 -9.7661e-30
-1.41209e-28 5.26998e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1178.96 -666.443 1.87317e-27
-Beff_: 3.38386 -1.45808 6.566e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=362.884
-q2=535.044
-q3=224.213
-q12=33.5982
-q13=2.66764e-29
-q23=-9.7661e-30
-q_onetwo=33.598217
-b1=3.383860
-b2=-1.458075
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.62884e+02 & 5.35044e+02 & 2.24213e+02 & 3.35982e+01 & 2.66764e-29 & -9.76610e-30 & 3.38386e+00 & -1.45808e+00 & 6.56600e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/BMatrix.txt
deleted file mode 100644
index 702bf5d7f9b49384ac40aba5831c0ca1e50d0438..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.38622447818192507
-1 2 -1.50729967730868508
-1 3 8.64824522312232702e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/QMatrix.txt
deleted file mode 100644
index 1e244e88b94b95db23b56f03b18f5ab22e77252f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 344.998044908976908
-1 2 33.6599693231505128
-1 3 7.8376530356679807e-16
-2 1 33.6599693231504205
-2 2 504.509099129817287
-2 3 2.28891489875043038e-16
-3 1 1.27892340035624334e-15
-3 2 -5.5903528656161541e-16
-3 3 214.696384378512647
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/perforated_wood_lower_log.txt
deleted file mode 100644
index d250ff21f56c27147b6456d6272a5a6b3a74f52e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/1/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.231826 6.04268e-19 0
-6.04268e-19 0.014246 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0125956 9.4124e-20 0
-9.4124e-20 0.122725 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-4.01162e-19 -0.00765556 0
--0.00765556 -5.05207e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-344.998 33.66 7.83765e-16
-33.66 504.509 2.28891e-16
-1.27892e-15 -5.59035e-16 214.696
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1117.51 -646.466 7.0301e-15
-Beff_: 3.38622 -1.5073 8.64825e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=344.998
-q2=504.509
-q3=214.696
-q12=33.66
-q13=7.83765e-16
-q23=2.28891e-16
-q_onetwo=33.659969
-b1=3.386224
-b2=-1.507300
-b3=0.000000
-mu_gamma=214.696384
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.44998e+02 & 5.04509e+02 & 2.14696e+02 & 3.36600e+01 & 7.83765e-16 & 2.28891e-16 & 3.38622e+00 & -1.50730e+00 & 8.64825e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/BMatrix.txt
deleted file mode 100644
index 4cf7f767ae212797dcc277633bac32733accbbb7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.38751867781356752
-1 2 -1.54825517746634622
-1 3 2.63368964115580119e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/QMatrix.txt
deleted file mode 100644
index 3e29b6f10e2b7a84d37f87e8f65aa1427d3829de..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 329.166779877348517
-1 2 33.2427905220994759
-1 3 -7.6088884948559074e-16
-2 1 33.2427905220995967
-2 2 480.185910971666715
-2 3 3.65489422784310257e-16
-3 1 6.93205834802288617e-16
-3 2 3.50498781914569419e-15
-3 3 204.431808589058903
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/perforated_wood_lower_log.txt
deleted file mode 100644
index 46237fad5e39f22f383021b8551fe6c8e86677f6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/2/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.236688 -2.76952e-19 0
--2.76952e-19 0.0147455 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0121199 1.42316e-19 0
-1.42316e-19 0.113357 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--5.67924e-20 -0.0161343 0
--0.0161343 1.94741e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-329.167 33.2428 -7.60889e-16
-33.2428 480.186 3.65489e-16
-6.93206e-16 3.50499e-15 204.432
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1063.59 -630.84 -2.53996e-15
-Beff_: 3.38752 -1.54826 2.63369e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=329.167
-q2=480.186
-q3=204.432
-q12=33.2428
-q13=-7.60889e-16
-q23=3.65489e-16
-q_onetwo=33.242791
-b1=3.387519
-b2=-1.548255
-b3=0.000000
-mu_gamma=204.431809
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.29167e+02 & 4.80186e+02 & 2.04432e+02 & 3.32428e+01 & -7.60889e-16 & 3.65489e-16 & 3.38752e+00 & -1.54826e+00 & 2.63369e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/BMatrix.txt
deleted file mode 100644
index fae9f46859f20e7038e99d7d952798a98d57a20d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.38677315818319613
-1 2 -1.58548811490238983
-1 3 2.66345360256195294e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/QMatrix.txt
deleted file mode 100644
index ad1aa6d963e2ab8a6e1b12bad2efddd7ef872d4d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 313.716635430162569
-1 2 32.0398639550847264
-1 3 4.85905659445055003e-15
-2 1 32.0398639550851598
-2 2 459.039654096284096
-2 3 5.41997049421005708e-15
-3 1 3.32577407047328702e-15
-3 2 4.10582915797287444e-15
-3 3 192.997144512449893
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/perforated_wood_lower_log.txt
deleted file mode 100644
index 420bd6058efc82bddb052a3686fc26fb7ddd7da1..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/3/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.241417 4.21599e-18 0
-4.21599e-18 0.0147446 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0119257 4.39247e-18 0
-4.39247e-18 0.104877 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-9.21444e-19 -0.0257544 0
--0.0257544 1.64891e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-313.717 32.0399 4.85906e-15
-32.0399 459.04 5.41997e-15
-3.32577e-15 4.10583e-15 192.997
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1011.69 -619.29 9.89429e-15
-Beff_: 3.38677 -1.58549 2.66345e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=313.717
-q2=459.04
-q3=192.997
-q12=32.0399
-q13=4.85906e-15
-q23=5.41997e-15
-q_onetwo=32.039864
-b1=3.386773
-b2=-1.585488
-b3=0.000000
-mu_gamma=192.997145
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.13717e+02 & 4.59040e+02 & 1.92997e+02 & 3.20399e+01 & 4.85906e-15 & 5.41997e-15 & 3.38677e+00 & -1.58549e+00 & 2.66345e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/BMatrix.txt
deleted file mode 100644
index 462213a66879654daa9d18e0de1b77e3ebd91838..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.38329165935905918
-1 2 -1.62307733423587353
-1 3 -4.75481677545238855e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/QMatrix.txt
deleted file mode 100644
index afea9392560251a252f8abbc29c9bc99a50d491e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 296.999292925999669
-1 2 29.9252990199986542
-1 3 3.96837307480892021e-15
-2 1 29.9252990199986577
-2 2 438.524434249791966
-2 3 1.97615793561391022e-15
-3 1 3.68911181781333454e-15
-3 2 6.03818829043368567e-15
-3 3 179.344860199959697
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/perforated_wood_lower_log.txt
deleted file mode 100644
index 6802dc4900633123e43132ae6be5fd3d0288fe7c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/4/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.246518 2.90359e-18 0
-2.90359e-18 0.0142323 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0119901 1.44253e-18 0
-1.44253e-18 0.0963391 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-8.95888e-19 -0.0373961 0
--0.0373961 2.63468e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-296.999 29.9253 3.96837e-15
-29.9253 438.524 1.97616e-15
-3.68911e-15 6.03819e-15 179.345
-
-------------------------
---- Prestrain Output ---
-Bhat_: 956.264 -610.513 1.82814e-15
-Beff_: 3.38329 -1.62308 -4.75482e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=296.999
-q2=438.524
-q3=179.345
-q12=29.9253
-q13=3.96837e-15
-q23=1.97616e-15
-q_onetwo=29.925299
-b1=3.383292
-b2=-1.623077
-b3=-0.000000
-mu_gamma=179.344860
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.96999e+02 & 4.38524e+02 & 1.79345e+02 & 2.99253e+01 & 3.96837e-15 & 1.97616e-15 & 3.38329e+00 & -1.62308e+00 & -4.75482e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/BMatrix.txt
deleted file mode 100644
index a94193556c8c9bd64f1f7ecddda8edbdf108d0f0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.38122519218866069
-1 2 -1.6616122530121884
-1 3 1.26485126661345282e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/QMatrix.txt
deleted file mode 100644
index 7ba3810a534d1e9aa8f805b9a2f4230f7fba627d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 283.375878161345554
-1 2 28.7826308829220778
-1 3 8.55205714052472907e-15
-2 1 28.7826308829218718
-2 2 418.964184128026147
-2 3 5.2669287930583869e-15
-3 1 9.6672920590987893e-15
-3 2 1.07166930359134036e-14
-3 3 168.2955375686536
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/perforated_wood_lower_log.txt
deleted file mode 100644
index 049d514fc97e59a346cb64862b6650a1005b36e3..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/5/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.250708 7.1493e-18 0
-7.1493e-18 0.0141849 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0117984 4.04093e-18 0
-4.04093e-18 0.0877191 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.55168e-18 -0.0468698 0
--0.0468698 5.25253e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-283.376 28.7826 8.55206e-15
-28.7826 418.964 5.26693e-15
-9.66729e-15 1.07167e-14 168.296
-
-------------------------
---- Prestrain Output ---
-Bhat_: 910.332 -598.835 3.61672e-14
-Beff_: 3.38123 -1.66161 1.26485e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=283.376
-q2=418.964
-q3=168.296
-q12=28.7826
-q13=8.55206e-15
-q23=5.26693e-15
-q_onetwo=28.782631
-b1=3.381225
-b2=-1.661612
-b3=0.000000
-mu_gamma=168.295538
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.83376e+02 & 4.18964e+02 & 1.68296e+02 & 2.87826e+01 & 8.55206e-15 & 5.26693e-15 & 3.38123e+00 & -1.66161e+00 & 1.26485e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/BMatrix.txt
deleted file mode 100644
index 1177db1a0425decde8da32e63cee783fda9b322b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.37520090948035811
-1 2 -1.68941079783955828
-1 3 5.86037437913984807e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/QMatrix.txt
deleted file mode 100644
index 24a3ba01b79789377971e9ec164e9cef359d1338..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 269.780072688275425
-1 2 26.4907150971832621
-1 3 1.19321997147834279e-14
-2 1 26.490715097183049
-2 2 405.237829781547759
-2 3 2.43658281112648246e-15
-3 1 9.93233967972297419e-15
-3 2 2.34726509266264781e-15
-3 3 154.36202894496958
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/perforated_wood_lower_log.txt
deleted file mode 100644
index 89342e523f4df5fcfb9a23927051579bdf31b74c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_3/6/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.254852 1.03996e-17 0
-1.03996e-17 0.0133238 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0120823 1.82025e-18 0
-1.82025e-18 0.081642 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.77565e-18 -0.0590472 0
--0.0590472 1.38459e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-269.78 26.4907 1.19322e-14
-26.4907 405.238 2.43658e-15
-9.93234e-15 2.34727e-15 154.362
-
-------------------------
---- Prestrain Output ---
-Bhat_: 865.808 -595.202 3.86043e-14
-Beff_: 3.3752 -1.68941 5.86037e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=269.78
-q2=405.238
-q3=154.362
-q12=26.4907
-q13=1.19322e-14
-q23=2.43658e-15
-q_onetwo=26.490715
-b1=3.375201
-b2=-1.689411
-b3=0.000000
-mu_gamma=154.362029
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.69780e+02 & 4.05238e+02 & 1.54362e+02 & 2.64907e+01 & 1.19322e-14 & 2.43658e-15 & 3.37520e+00 & -1.68941e+00 & 5.86037e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/BMatrix.txt
deleted file mode 100644
index cf985a30eec284ccfb47a20e95b7be9188929eda..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.66483564170735132
-1 2 -1.79630256913598552
-1 3 4.21524999060086665e-30
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/QMatrix.txt
deleted file mode 100644
index 4a9637791f9660e319dd9c2c48cf0c28e5488883..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 373.387124642992148
-1 2 30.7757080923943889
-1 3 -2.37028050115625891e-29
-2 1 30.775708092396453
-2 2 448.128969415925155
-2 3 1.50199183761628701e-29
-3 1 1.20071502034347367e-28
-3 2 5.43021142564616303e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/perforated_wood_lower_log.txt
deleted file mode 100644
index f4172fa32c2016934adf939bcc038327f5941ce6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/0/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.210626 4.03909e-30 0
-4.03909e-30 0.0139554 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0139207 2.21589e-30 0
-2.21589e-30 0.165225 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.46285e-32 8.75336e-20 0
-8.75336e-20 5.29448e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-373.387 30.7757 -2.37028e-29
-30.7757 448.129 1.50199e-29
-1.20072e-28 5.43021e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 939.733 -722.963 1.16754e-27
-Beff_: 2.66484 -1.7963 4.21525e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=373.387
-q2=448.129
-q3=224.213
-q12=30.7757
-q13=-2.37028e-29
-q23=1.50199e-29
-q_onetwo=30.775708
-b1=2.664836
-b2=-1.796303
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.73387e+02 & 4.48129e+02 & 2.24213e+02 & 3.07757e+01 & -2.37028e-29 & 1.50199e-29 & 2.66484e+00 & -1.79630e+00 & 4.21525e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/BMatrix.txt
deleted file mode 100644
index 5f409bdfc57b7470f35ca8375f2f1b2573f2c7a2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.64084196068768717
-1 2 -1.86292581212924491
-1 3 2.80587556336952648e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/QMatrix.txt
deleted file mode 100644
index 08889376bea01410515148a8e1e4beff1e8b3059..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 350.941627827251864
-1 2 30.8198020787422848
-1 3 1.21673932356651613e-15
-2 1 30.8198020787423559
-2 2 416.367504742039273
-2 3 3.32948428654049767e-16
-3 1 1.42819040505759312e-15
-3 2 1.51145628487153261e-15
-3 3 210.405969407880406
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/perforated_wood_lower_log.txt
deleted file mode 100644
index 9018c192bb997389291d15551dba1e486f99a86b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/1/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.216356 8.21075e-19 0
-8.21075e-19 0.01497 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0130783 2.41671e-19 0
-2.41671e-19 0.15004 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.86302e-19 -0.0107364 0
--0.0107364 7.63935e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-350.942 30.8198 1.21674e-15
-30.8198 416.368 3.32948e-16
-1.42819e-15 1.51146e-15 210.406
-
-------------------------
---- Prestrain Output ---
-Bhat_: 869.366 -694.272 6.85962e-15
-Beff_: 2.64084 -1.86293 2.80588e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=350.942
-q2=416.368
-q3=210.406
-q12=30.8198
-q13=1.21674e-15
-q23=3.32948e-16
-q_onetwo=30.819802
-b1=2.640842
-b2=-1.862926
-b3=0.000000
-mu_gamma=210.405969
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.50942e+02 & 4.16368e+02 & 2.10406e+02 & 3.08198e+01 & 1.21674e-15 & 3.32948e-16 & 2.64084e+00 & -1.86293e+00 & 2.80588e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/BMatrix.txt
deleted file mode 100644
index 275f0014fe6feebaa58ba2695be1c791b404b130..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.61335363713313429
-1 2 -1.9186806441407207
-1 3 2.81160794142212136e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/QMatrix.txt
deleted file mode 100644
index 6165b3d1621163ebb93391c5e4d16d789732d972..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 330.617420397262265
-1 2 29.5717994893105676
-1 3 3.10627734065359665e-15
-2 1 29.571799489311168
-2 2 391.802621169245697
-2 3 5.74697145455518117e-15
-3 1 2.74744919672473102e-15
-3 2 5.98663722998907851e-15
-3 3 193.98359385074221
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/perforated_wood_lower_log.txt
deleted file mode 100644
index 99ba84e395a464b80b3c9d9d3edf16583a4a1164..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/2/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.221497 2.47417e-18 0
-2.47417e-18 0.0150259 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0126967 4.55047e-18 0
-4.55047e-18 0.137577 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-5.53843e-19 -0.0236685 0
--0.0236685 2.95013e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-330.617 29.5718 3.10628e-15
-29.5718 391.803 5.74697e-15
-2.74745e-15 5.98664e-15 193.984
-
-------------------------
---- Prestrain Output ---
-Bhat_: 807.281 -674.463 1.14767e-15
-Beff_: 2.61335 -1.91868 2.81161e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=330.617
-q2=391.803
-q3=193.984
-q12=29.5718
-q13=3.10628e-15
-q23=5.74697e-15
-q_onetwo=29.571799
-b1=2.613354
-b2=-1.918681
-b3=0.000000
-mu_gamma=193.983594
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.30617e+02 & 3.91803e+02 & 1.93984e+02 & 2.95718e+01 & 3.10628e-15 & 5.74697e-15 & 2.61335e+00 & -1.91868e+00 & 2.81161e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/BMatrix.txt
deleted file mode 100644
index c5cdc8658be335b4c6ccd23549d9c9f100ed6f71..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.57983447425291912
-1 2 -1.96959270886908477
-1 3 6.7069316956404983e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/QMatrix.txt
deleted file mode 100644
index 579e4e2e683971e7afbca984f8d70d2f191215af..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 311.03932809744191
-1 2 27.4499183923376222
-1 3 8.71578627988838037e-15
-2 1 27.4499183923380947
-2 2 371.121451353094471
-2 3 -2.38052638243542967e-15
-3 1 7.44154527766455881e-15
-3 2 4.64443729209938674e-15
-3 3 177.032179766534455
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/perforated_wood_lower_log.txt
deleted file mode 100644
index 3e6940c9fb9869645232a9b77f9afaf2283edbb8..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/3/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.226439 6.2743e-18 0
-6.2743e-18 0.0144478 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0126154 -1.74495e-18 0
--1.74495e-18 0.126644 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.67747e-18 -0.0371856 0
--0.0371856 1.69041e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-311.039 27.4499 8.71579e-15
-27.4499 371.121 -2.38053e-15
-7.44155e-15 4.64444e-15 177.032
-
-------------------------
---- Prestrain Output ---
-Bhat_: 748.365 -660.142 2.19237e-14
-Beff_: 2.57983 -1.96959 6.70693e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=311.039
-q2=371.121
-q3=177.032
-q12=27.4499
-q13=8.71579e-15
-q23=-2.38053e-15
-q_onetwo=27.449918
-b1=2.579834
-b2=-1.969593
-b3=0.000000
-mu_gamma=177.032180
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.11039e+02 & 3.71121e+02 & 1.77032e+02 & 2.74499e+01 & 8.71579e-15 & -2.38053e-15 & 2.57983e+00 & -1.96959e+00 & 6.70693e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/BMatrix.txt
deleted file mode 100644
index 9fef61d6aa3181e531351ef52b94b1f02282ba84..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.54359903624110961
-1 2 -2.02706836820654068
-1 3 1.56564847223068667e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/QMatrix.txt
deleted file mode 100644
index adeaadcc88752576e4f1963716171bd09a5f84b5..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 292.462287506646305
-1 2 25.3977418053974979
-1 3 9.8710763277469124e-15
-2 1 25.3977418053975263
-2 2 349.523219123234981
-2 3 6.57707493958116702e-15
-3 1 1.07156565852233195e-14
-3 2 3.56775804273492137e-15
-3 3 159.642188914734078
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/perforated_wood_lower_log.txt
deleted file mode 100644
index 4e7cfe7cae4b9c9b3203ca0c125f97349526d649..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/4/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.231137 7.93719e-18 0
-7.93719e-18 0.013851 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0124778 4.69729e-18 0
-4.69729e-18 0.114697 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.41765e-18 -0.051106 0
--0.051106 2.80905e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-292.462 25.3977 9.87108e-15
-25.3977 349.523 6.57707e-15
-1.07157e-14 3.56776e-15 159.642
-
-------------------------
---- Prestrain Output ---
-Bhat_: 692.424 -643.906 4.50186e-14
-Beff_: 2.5436 -2.02707 1.56565e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=292.462
-q2=349.523
-q3=159.642
-q12=25.3977
-q13=9.87108e-15
-q23=6.57707e-15
-q_onetwo=25.397742
-b1=2.543599
-b2=-2.027068
-b3=0.000000
-mu_gamma=159.642189
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.92462e+02 & 3.49523e+02 & 1.59642e+02 & 2.53977e+01 & 9.87108e-15 & 6.57707e-15 & 2.54360e+00 & -2.02707e+00 & 1.56565e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/BMatrix.txt
deleted file mode 100644
index 41444cd147ea878738bc62a7d0b2fdc26ba81e19..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.50985555274914951
-1 2 -2.07270084155500633
-1 3 -1.82786735055732479e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/QMatrix.txt
deleted file mode 100644
index e3e456fb788b7457c3c97249a1ef6cc3958784e4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 277.912968581139125
-1 2 23.2625137861003921
-1 3 4.62919980465299231e-15
-2 1 23.2625137861004276
-2 2 333.788388979598949
-2 3 6.62905645158165698e-15
-3 1 4.80927551522834914e-15
-3 2 3.73496499350088043e-15
-3 3 144.67579710917019
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/perforated_wood_lower_log.txt
deleted file mode 100644
index acf86395401ba0eb90b17aff14e2efbf4653d74b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/5/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.234799 3.63985e-18 0
-3.63985e-18 0.0129734 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.012521 5.57489e-18 0
-5.57489e-18 0.105707 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.08842e-18 -0.0631254 0
--0.0631254 2.22954e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-277.913 23.2625 4.6292e-15
-23.2625 333.788 6.62906e-15
-4.80928e-15 3.73496e-15 144.676
-
-------------------------
---- Prestrain Output ---
-Bhat_: 649.305 -633.458 1.68464e-15
-Beff_: 2.50986 -2.0727 -1.82787e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=277.913
-q2=333.788
-q3=144.676
-q12=23.2625
-q13=4.6292e-15
-q23=6.62906e-15
-q_onetwo=23.262514
-b1=2.509856
-b2=-2.072701
-b3=-0.000000
-mu_gamma=144.675797
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.77913e+02 & 3.33788e+02 & 1.44676e+02 & 2.32625e+01 & 4.62920e-15 & 6.62906e-15 & 2.50986e+00 & -2.07270e+00 & -1.82787e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/BMatrix.txt
deleted file mode 100644
index 49eda31319e6b4cad4b8aeb5d5c89a9c7d95d270..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.46804739698933817
-1 2 -2.13505755233524619
-1 3 -1.13034066728119737e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/QMatrix.txt
deleted file mode 100644
index eb97b4b3941d02303a46defcc7623ecf7e6bb750..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 261.64171605394705
-1 2 21.1839222220784009
-1 3 1.20140802722121329e-14
-2 1 21.1839222220786496
-2 2 313.790650921373697
-2 3 -9.32894226015877647e-15
-3 1 8.9196925874553571e-15
-3 2 -1.05039799249617544e-14
-3 3 127.92370442847799
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/perforated_wood_lower_log.txt
deleted file mode 100644
index e7b2de5a9cc6e8e0d1413a1182b1d41407d8c0b6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_4/6/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.238922 9.55391e-18 0
-9.55391e-18 0.0121993 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0124125 -6.93357e-18 0
--6.93357e-18 0.0938459 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.54823e-18 -0.076615 0
--0.076615 -5.59273e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-261.642 21.1839 1.20141e-14
-21.1839 313.791 -9.32894e-15
-8.91969e-15 -1.0504e-14 127.924
-
-------------------------
---- Prestrain Output ---
-Bhat_: 600.515 -617.678 2.99811e-14
-Beff_: 2.46805 -2.13506 -1.13034e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=261.642
-q2=313.791
-q3=127.924
-q12=21.1839
-q13=1.20141e-14
-q23=-9.32894e-15
-q_onetwo=21.183922
-b1=2.468047
-b2=-2.135058
-b3=-0.000000
-mu_gamma=127.923704
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.61642e+02 & 3.13791e+02 & 1.27924e+02 & 2.11839e+01 & 1.20141e-14 & -9.32894e-15 & 2.46805e+00 & -2.13506e+00 & -1.13034e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/BMatrix.txt
deleted file mode 100644
index fe91116a66419140efcfa10e10a57b8649f812fe..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.16105074507935901
-1 2 -1.98344337231396772
-1 3 2.57091952786952586e-30
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/QMatrix.txt
deleted file mode 100644
index 4b39868fc16ffde1fb3c56a29652891f988e3867..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 392.349438313312987
-1 2 30.0048996530020879
-1 3 7.23841510298498723e-30
-2 1 30.0048996530034842
-2 2 408.259132159441322
-2 3 1.7046791123760302e-29
-3 1 9.62934661366485363e-29
-3 2 5.3155620009550965e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/perforated_wood_lower_log.txt
deleted file mode 100644
index 7b23e855a378beb2a618a6c315b373a59da5242f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/0/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.194908 4.70518e-30 0
-4.70518e-30 0.0140927 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0140835 1.635e-30 0
-1.635e-30 0.184932 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.58978e-32 8.75336e-20 0
-8.75336e-20 2.01554e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-392.349 30.0049 7.23842e-30
-30.0049 408.259 1.70468e-29
-9.62935e-29 5.31556e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 788.374 -744.917 6.79097e-28
-Beff_: 2.16105 -1.98344 2.57092e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=392.349
-q2=408.259
-q3=224.213
-q12=30.0049
-q13=7.23842e-30
-q23=1.70468e-29
-q_onetwo=30.004900
-b1=2.161051
-b2=-1.983443
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.92349e+02 & 4.08259e+02 & 2.24213e+02 & 3.00049e+01 & 7.23842e-30 & 1.70468e-29 & 2.16105e+00 & -1.98344e+00 & 2.57092e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/BMatrix.txt
deleted file mode 100644
index b058a2ec04cd31f1ad0efbfba4203373beebfc34..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.1061545917084481
-1 2 -2.05749963086853249
-1 3 4.12058797616348285e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/QMatrix.txt
deleted file mode 100644
index ae302b27657c743e4ae725341b0ffb82ee92d460..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 366.098378118214782
-1 2 29.7018808193731338
-1 3 1.29384992083187702e-15
-2 1 29.7018808193747752
-2 2 375.701560639536922
-2 3 6.14731554196517704e-16
-3 1 1.38543668174272833e-15
-3 2 2.39509492561173001e-15
-3 3 205.870165856768466
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/perforated_wood_lower_log.txt
deleted file mode 100644
index d75c57c86d5988e126f6b2483ae341269e309a43..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/1/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.201008 8.80611e-19 0
-8.80611e-19 0.0150933 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.013212 4.23397e-19 0
-4.23397e-19 0.166592 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.34117e-19 -0.0139935 0
--0.0139935 8.14355e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-366.098 29.7019 1.29385e-15
-29.7019 375.702 6.14732e-16
-1.38544e-15 2.39509e-15 205.87
-
-------------------------
---- Prestrain Output ---
-Bhat_: 709.948 -710.449 6.4731e-15
-Beff_: 2.10615 -2.0575 4.12059e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=366.098
-q2=375.702
-q3=205.87
-q12=29.7019
-q13=1.29385e-15
-q23=6.14732e-16
-q_onetwo=29.701881
-b1=2.106155
-b2=-2.057500
-b3=0.000000
-mu_gamma=205.870166
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.66098e+02 & 3.75702e+02 & 2.05870e+02 & 2.97019e+01 & 1.29385e-15 & 6.14732e-16 & 2.10615e+00 & -2.05750e+00 & 4.12059e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/BMatrix.txt
deleted file mode 100644
index 98fec13bd8239f6d45efe4097c6965b28a77bd56..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.04691426025401491
-1 2 -2.12015269213630875
-1 3 -7.55855336156709028e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/QMatrix.txt
deleted file mode 100644
index edb0a1945429c8dc868f9b8993bdf8c4fbe153ed..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 342.753261612282586
-1 2 28.1135342761408502
-1 3 6.41393972913221859e-15
-2 1 28.1135342761428859
-2 2 350.632046979650966
-2 3 2.92675479553235608e-15
-3 1 3.00056985229774651e-15
-3 2 1.60552024657618832e-15
-3 3 185.675683578806257
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/perforated_wood_lower_log.txt
deleted file mode 100644
index 593b579b054897ec93e38503cabe282af526c425..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/2/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.206393 3.81715e-18 0
-3.81715e-18 0.0149939 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0127955 2.04777e-18 0
-2.04777e-18 0.15147 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-5.73124e-19 -0.0295733 0
--0.0295733 -5.19757e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-342.753 28.1135 6.41394e-15
-28.1135 350.632 2.92675e-15
-3.00057e-15 1.60552e-15 185.676
-
-------------------------
---- Prestrain Output ---
-Bhat_: 641.982 -685.847 1.33452e-15
-Beff_: 2.04691 -2.12015 -7.55855e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=342.753
-q2=350.632
-q3=185.676
-q12=28.1135
-q13=6.41394e-15
-q23=2.92675e-15
-q_onetwo=28.113534
-b1=2.046914
-b2=-2.120153
-b3=-0.000000
-mu_gamma=185.675684
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.42753e+02 & 3.50632e+02 & 1.85676e+02 & 2.81135e+01 & 6.41394e-15 & 2.92675e-15 & 2.04691e+00 & -2.12015e+00 & -7.55855e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/BMatrix.txt
deleted file mode 100644
index c457041bcfa22edb9a203265b1a0e69f014bc99f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.98562237208890258
-1 2 -2.17940998837972355
-1 3 7.38115124322571334e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/QMatrix.txt
deleted file mode 100644
index c32d99d4eac191062e6a9a5bb66e26f2e4daa3a2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 322.352575642990985
-1 2 25.8272422694688366
-1 3 2.73533006107365331e-15
-2 1 25.8272422694702222
-2 2 329.242014984973252
-2 3 7.46489400555341962e-15
-3 1 3.58096498044851042e-15
-3 2 7.34050875249634251e-15
-3 3 165.903215269326296
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/perforated_wood_lower_log.txt
deleted file mode 100644
index 2d6cfb63c3145159def3fb305cec3535116b28c0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/3/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.21108 1.65143e-18 0
-1.65143e-18 0.0141639 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0126209 5.35595e-18 0
-5.35595e-18 0.137885 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-6.78027e-19 -0.0449324 0
--0.0449324 2.88833e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-322.353 25.8272 2.73533e-15
-25.8272 329.242 7.46489e-15
-3.58096e-15 7.34051e-15 165.903
-
-------------------------
---- Prestrain Output ---
-Bhat_: 583.782 -666.27 3.35803e-15
-Beff_: 1.98562 -2.17941 7.38115e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=322.353
-q2=329.242
-q3=165.903
-q12=25.8272
-q13=2.73533e-15
-q23=7.46489e-15
-q_onetwo=25.827242
-b1=1.985622
-b2=-2.179410
-b3=0.000000
-mu_gamma=165.903215
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.22353e+02 & 3.29242e+02 & 1.65903e+02 & 2.58272e+01 & 2.73533e-15 & 7.46489e-15 & 1.98562e+00 & -2.17941e+00 & 7.38115e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/BMatrix.txt
deleted file mode 100644
index 250785c2c51b58e6a98a97ffc58c2a584d7e3425..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.91570194411631678
-1 2 -2.24295725570139792
-1 3 1.34912644755279199e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/QMatrix.txt
deleted file mode 100644
index 92013f4aeb09a89976ab502347ca3a2ab9436c10..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 302.234080455674871
-1 2 23.2535298002713233
-1 3 8.81338395716986262e-15
-2 1 23.2535298002727835
-2 2 308.309813768154072
-2 3 4.5191842802576272e-15
-3 1 6.55517878055261873e-15
-3 2 5.66079233726805853e-15
-3 3 143.920826132131651
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/perforated_wood_lower_log.txt
deleted file mode 100644
index 8b2d0d619bd3c28c34ee8acf84d175ebcd20f51c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/4/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.215697 6.32367e-18 0
-6.32367e-18 0.0130381 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0125048 3.38341e-18 0
-3.38341e-18 0.123946 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.34089e-18 -0.0620494 0
--0.0620494 1.15303e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-302.234 23.2535 8.81338e-15
-23.2535 308.31 4.51918e-15
-6.55518e-15 5.66079e-15 143.921
-
-------------------------
---- Prestrain Output ---
-Bhat_: 526.834 -646.979 1.92776e-14
-Beff_: 1.9157 -2.24296 1.34913e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=302.234
-q2=308.31
-q3=143.921
-q12=23.2535
-q13=8.81338e-15
-q23=4.51918e-15
-q_onetwo=23.253530
-b1=1.915702
-b2=-2.242957
-b3=0.000000
-mu_gamma=143.920826
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.02234e+02 & 3.08310e+02 & 1.43921e+02 & 2.32535e+01 & 8.81338e-15 & 4.51918e-15 & 1.91570e+00 & -2.24296e+00 & 1.34913e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/BMatrix.txt
deleted file mode 100644
index 7aea8150e38e4abc41c64dcd4f04f00091669cf4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.85603858117051512
-1 2 -2.29768785669702602
-1 3 2.83658073463701581e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/QMatrix.txt
deleted file mode 100644
index a1f2f24b1ca97b4c8adfb448ec7e8c4a6a0cbd74..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 287.227199663029864
-1 2 21.1402971366876073
-1 3 1.11864520027464814e-14
-2 1 21.1402971366892807
-2 2 291.812840215799497
-2 3 6.28886335012974118e-15
-3 1 1.02101052088826068e-14
-3 2 1.00539629171577326e-14
-3 3 127.350584733715976
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/perforated_wood_lower_log.txt
deleted file mode 100644
index 3e7837ebced262e22635f14cae63f44c5d6b2eea..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/5/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.219149 8.84267e-18 0
-8.84267e-18 0.0119812 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0124179 4.92072e-18 0
-4.92072e-18 0.11251 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.70323e-18 -0.0750794 0
--0.0750794 6.87087e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-287.227 21.1403 1.11865e-14
-21.1403 291.813 6.28886e-15
-1.02101e-14 1.0054e-14 127.351
-
-------------------------
---- Prestrain Output ---
-Bhat_: 484.531 -631.258 3.19735e-14
-Beff_: 1.85604 -2.29769 2.83658e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=287.227
-q2=291.813
-q3=127.351
-q12=21.1403
-q13=1.11865e-14
-q23=6.28886e-15
-q_onetwo=21.140297
-b1=1.856039
-b2=-2.297688
-b3=0.000000
-mu_gamma=127.350585
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.87227e+02 & 2.91813e+02 & 1.27351e+02 & 2.11403e+01 & 1.11865e-14 & 6.28886e-15 & 1.85604e+00 & -2.29769e+00 & 2.83658e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/BMatrix.txt
deleted file mode 100644
index 886ebf51c5dd330f61d3c49b555f97e4f7f8a867..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.77198211972579278
-1 2 -2.39434522901654789
-1 3 1.4424981126321284e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/QMatrix.txt
deleted file mode 100644
index 297de60d4c82f3c922a69297c274587abbe83061..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 268.290759685767568
-1 2 18.5710614166336114
-1 3 6.66333316180462934e-15
-2 1 18.5710614166351675
-2 2 265.249471970727427
-2 3 6.20437371946525604e-15
-3 1 6.98960597821758015e-15
-3 2 7.63185473442952369e-15
-3 3 108.737718776175683
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/perforated_wood_lower_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/perforated_wood_lower_log.txt
deleted file mode 100644
index 1673673e0af9a4ab78bd5060300c641913bcf365..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_lower_5/6/perforated_wood_lower_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.22351 4.98536e-18 0
-4.98536e-18 0.0107635 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0120637 4.47891e-18 0
-4.47891e-18 0.093279 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.49156e-18 -0.0895979 0
--0.0895979 1.62664e-18 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-268.291 18.5711 6.66333e-15
-18.5711 265.249 6.20437e-15
-6.98961e-15 7.63185e-15 108.738
-
-------------------------
---- Prestrain Output ---
-Bhat_: 430.941 -602.191 9.79756e-15
-Beff_: 1.77198 -2.39435 1.4425e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=268.291
-q2=265.249
-q3=108.738
-q12=18.5711
-q13=6.66333e-15
-q23=6.20437e-15
-q_onetwo=18.571061
-b1=1.771982
-b2=-2.394345
-b3=0.000000
-mu_gamma=108.737719
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.68291e+02 & 2.65249e+02 & 1.08738e+02 & 1.85711e+01 & 6.66333e-15 & 6.20437e-15 & 1.77198e+00 & -2.39435e+00 & 1.44250e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/BMatrix.txt
deleted file mode 100644
index 6137c432727280d2dfa86fd721657aeb9a3c66f1..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.02691656716370883
-1 2 -0.576108730383210088
-1 3 2.03963883345130819e-29
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/QMatrix.txt
deleted file mode 100644
index 1534b2f63411bcda7d39fe9bba6dbfc3f37a9f36..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 344.448324198946295
-1 2 46.0309380450088881
-1 3 -1.8599861030914169e-29
-2 1 46.0309380450078862
-2 2 889.279295541113925
-2 3 4.12349304813084745e-29
-3 1 2.07158959089932232e-28
-3 2 6.15195762196629843e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/perforated_wood_upper_log.txt
deleted file mode 100644
index 99f7b04aed50a6f5f8b809662c422788b272d41a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/0/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/BMatrix.txt
deleted file mode 100644
index 162fada30f719de54b5eeef8bdc99c855c68846d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.01673193948725782
-1 2 -0.571408585630656329
-1 3 2.51259428533307006e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/QMatrix.txt
deleted file mode 100644
index 81a5a9f0d6ece78aac370812c8d3d1de316a823f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 342.715642066076271
-1 2 45.9631740539720255
-1 3 -9.74079419012972847e-17
-2 1 45.9631740539719189
-2 2 888.598101699151925
-2 3 -1.20719135642682884e-17
-3 1 5.65142499990437322e-17
-3 2 1.88651178012477772e-17
-3 3 223.44819507587161
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/perforated_wood_upper_log.txt
deleted file mode 100644
index d3fb0f043d1a7fb318cc5c9901d6bec3fc899007..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/1/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.190569 4.46494e-20 0
-4.46494e-20 0.00907093 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0090996 4.2367e-21 0
-4.2367e-21 0.0532993 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.02978e-20 0.000454423 0
-0.000454423 2.17517e-21 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-342.716 45.9632 -9.74079e-17
-45.9632 888.598 -1.20719e-17
-5.65142e-17 1.88651e-17 223.448
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1350.33 -323.131 7.77658e-16
-Beff_: 4.01673 -0.571409 2.51259e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=342.716
-q2=888.598
-q3=223.448
-q12=45.9632
-q13=-9.74079e-17
-q23=-1.20719e-17
-q_onetwo=45.963174
-b1=4.016732
-b2=-0.571409
-b3=0.000000
-mu_gamma=223.448195
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.42716e+02 & 8.88598e+02 & 2.23448e+02 & 4.59632e+01 & -9.74079e-17 & -1.20719e-17 & 4.01673e+00 & -5.71409e-01 & 2.51259e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/BMatrix.txt
deleted file mode 100644
index 7b2067cd914aa770d23c951458a16167124e57be..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.99261936981966148
-1 2 -0.563429760320957818
-1 3 -1.73558493291249697e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/QMatrix.txt
deleted file mode 100644
index dd1672f3194271d20ab8f057eb3f254f1a343238..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 338.762457579968952
-1 2 45.8870250767289463
-1 3 9.94653849301779802e-17
-2 1 45.8870250767283565
-2 2 887.509454114953996
-2 3 -9.22249472970482209e-18
-3 1 -4.02255946651067231e-17
-3 2 1.38371302263462503e-17
-3 3 222.060151454125048
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/perforated_wood_upper_log.txt
deleted file mode 100644
index 234539afcf5e6d24e6e414b2130aced7eac58916..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/2/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.186263 2.29123e-20 0
-2.29123e-20 0.00889962 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0090719 -9.77089e-21 0
--9.77089e-21 0.0534633 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.22798e-19 0.00127509 0
-0.00127509 -1.1496e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-338.762 45.887 9.94654e-17
-45.887 887.509 -9.22249e-18
--4.02256e-17 1.38371e-17 222.06
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1326.7 -316.84 -4.02244e-15
-Beff_: 3.99262 -0.56343 -1.73558e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=338.762
-q2=887.509
-q3=222.06
-q12=45.887
-q13=9.94654e-17
-q23=-9.22249e-18
-q_onetwo=45.887025
-b1=3.992619
-b2=-0.563430
-b3=-0.000000
-mu_gamma=222.060151
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.38762e+02 & 8.87509e+02 & 2.22060e+02 & 4.58870e+01 & 9.94654e-17 & -9.22249e-18 & 3.99262e+00 & -5.63430e-01 & -1.73558e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/BMatrix.txt
deleted file mode 100644
index faab1ef9f610361cffdc0059f14e4e3f31715186..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.97078368225017275
-1 2 -0.556369464925766444
-1 3 -9.32048369001289406e-18
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/QMatrix.txt
deleted file mode 100644
index 5df80343bf9dfc9e3bcf58d76fd3d7c031902594..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 335.306350973629947
-1 2 45.8394886569432529
-1 3 -1.28505062493844413e-16
-2 1 45.8394886569433737
-2 2 886.559257726907504
-2 3 5.96311194867027439e-19
-3 1 -1.06392420372823648e-16
-3 2 1.24032728532341707e-16
-3 3 220.830700202961594
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/perforated_wood_upper_log.txt
deleted file mode 100644
index f308d41511558d9dac56697c23d7bc4f69b113f1..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/3/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.1825 1.13671e-19 0
-1.13671e-19 0.00874706 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00906937 6.22089e-21 0
-6.22089e-21 0.0536072 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-5.80917e-20 0.00200073 0
-0.00200073 -2.09481e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-335.306 45.8395 -1.28505e-16
-45.8395 886.559 5.96311e-19
--1.06392e-16 1.24033e-16 220.831
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1305.93 -311.236 -2.54972e-15
-Beff_: 3.97078 -0.556369 -9.32048e-18 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=335.306
-q2=886.559
-q3=220.831
-q12=45.8395
-q13=-1.28505e-16
-q23=5.96311e-19
-q_onetwo=45.839489
-b1=3.970784
-b2=-0.556369
-b3=-0.000000
-mu_gamma=220.830700
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.35306e+02 & 8.86559e+02 & 2.20831e+02 & 4.58395e+01 & -1.28505e-16 & 5.96311e-19 & 3.97078e+00 & -5.56369e-01 & -9.32048e-18 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/BMatrix.txt
deleted file mode 100644
index 64d788e9b2bf57804e0ea30efa23689e8dc02971..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.94438143205773395
-1 2 -0.547901184739255753
-1 3 -4.47874406120455803e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/QMatrix.txt
deleted file mode 100644
index 3f164ebaa534826c30ef3493687036a0e21369c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 331.414065437273905
-1 2 45.8424572655846063
-1 3 -3.23397179261691869e-16
-2 1 45.8424572655844003
-2 2 885.454376361429695
-2 3 2.10213248717783241e-16
-3 1 -7.78118346665690463e-17
-3 2 2.77135627814451002e-16
-3 3 219.689155392519297
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/perforated_wood_upper_log.txt
deleted file mode 100644
index be0ea3f61f9e43fd75efab3cb7862f6c1da7a155..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/4/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.178244 1.54067e-19 0
-1.54067e-19 0.00856605 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00913131 -1.01188e-19 0
--1.01188e-19 0.0537782 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--2.96965e-19 0.00267882 0
-0.00267882 -5.31212e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-331.414 45.8425 -3.23397e-16
-45.8425 885.454 2.10213e-16
--7.78118e-17 2.77136e-16 219.689
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1282.11 -304.321 -1.02981e-14
-Beff_: 3.94438 -0.547901 -4.47874e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=331.414
-q2=885.454
-q3=219.689
-q12=45.8425
-q13=-3.23397e-16
-q23=2.10213e-16
-q_onetwo=45.842457
-b1=3.944381
-b2=-0.547901
-b3=-0.000000
-mu_gamma=219.689155
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.31414e+02 & 8.85454e+02 & 2.19689e+02 & 4.58425e+01 & -3.23397e-16 & 2.10213e-16 & 3.94438e+00 & -5.47901e-01 & -4.47874e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/BMatrix.txt
deleted file mode 100644
index 75e9fc8a6197f26f6ef957049d969e5d98c64210..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.92097133914863383
-1 2 -0.540085381245060669
-1 3 -6.32868304100547971e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/QMatrix.txt
deleted file mode 100644
index 0a342cdaac1897ca0f9d11f21d43d6b6f412273d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 327.71805083935061
-1 2 45.7253975106491382
-1 3 -8.34517188425670797e-16
-2 1 45.7253975106488824
-2 2 884.378237235491497
-2 3 -7.08255069176155772e-17
-3 1 3.63470307996292818e-16
-3 2 1.69406589450860068e-17
-3 3 218.200168053860807
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/perforated_wood_upper_log.txt
deleted file mode 100644
index e75eb77e7f1bd78503aebecb4346e24f1ff695f5..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/5/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.174218 4.80035e-19 0
-4.80035e-19 0.00841287 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00905803 4.17841e-20 0
-4.17841e-20 0.0539386 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--5.12678e-19 0.00356092 0
-0.00356092 -3.5313e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-327.718 45.7254 -8.34517e-16
-45.7254 884.378 -7.08255e-17
-3.6347e-16 1.69407e-17 218.2
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1260.28 -298.352 -1.23932e-14
-Beff_: 3.92097 -0.540085 -6.32868e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=327.718
-q2=884.378
-q3=218.2
-q12=45.7254
-q13=-8.34517e-16
-q23=-7.08255e-17
-q_onetwo=45.725398
-b1=3.920971
-b2=-0.540085
-b3=-0.000000
-mu_gamma=218.200168
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.27718e+02 & 8.84378e+02 & 2.18200e+02 & 4.57254e+01 & -8.34517e-16 & -7.08255e-17 & 3.92097e+00 & -5.40085e-01 & -6.32868e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/BMatrix.txt
deleted file mode 100644
index 9e069aa4aeba316d9ab0094172e2f6688dad72ef..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.90142234921865816
-1 2 -0.534276810382432465
-1 3 -2.15544494999674406e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/QMatrix.txt
deleted file mode 100644
index 2203179fa31f11ef6ae0e6b3a42b2d6cb41ff827..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 325.032716633168945
-1 2 45.743787702752492
-1 3 1.33255223262046529e-16
-2 1 45.7437877027524493
-2 2 883.641778144533646
-2 3 4.0467846088021453e-17
-3 1 6.04557907641495307e-16
-3 2 8.70072243419617308e-17
-3 3 217.317881532470125
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/parameter.txt
deleted file mode 100644
index 4dd2428f3e774b36551278b72a914a000870210d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/perforated_wood_upper_log.txt
deleted file mode 100644
index d9aee5ce3d0a94747a691d0790c15f191dae67b6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_0/6/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.171263 -1.31601e-19 0
--1.31601e-19 0.00828488 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00911954 2.29238e-20 0
-2.29238e-20 0.0540531 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--5.52529e-19 0.00408412 0
-0.00408412 -1.89684e-22 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-325.033 45.7438 1.33255e-16
-45.7438 883.642 4.04678e-17
-6.04558e-16 8.70072e-17 217.318
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1243.65 -293.643 -2.37202e-15
-Beff_: 3.90142 -0.534277 -2.15544e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=325.033
-q2=883.642
-q3=217.318
-q12=45.7438
-q13=1.33255e-16
-q23=4.04678e-17
-q_onetwo=45.743788
-b1=3.901422
-b2=-0.534277
-b3=-0.000000
-mu_gamma=217.317882
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.25033e+02 & 8.83642e+02 & 2.17318e+02 & 4.57438e+01 & 1.33255e-16 & 4.04678e-17 & 3.90142e+00 & -5.34277e-01 & -2.15544e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/BMatrix.txt
deleted file mode 100644
index 910cfcd016877f3d866c6eaf21b888ed5a6882e2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.15596094148045392
-1 2 -0.776402193757820269
-1 3 1.7703424517171586e-29
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/QMatrix.txt
deleted file mode 100644
index 2c5d3a2b37ab326494910bb78231fb135d60cb0f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 357.254344081100442
-1 2 42.7769003929809344
-1 3 -3.54062960976149439e-29
-2 1 42.7769003929807212
-2 2 790.334706977815472
-2 3 -2.1239155426702437e-30
-3 1 2.04724547529040308e-28
-3 2 5.65787579245127431e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/perforated_wood_upper_log.txt
deleted file mode 100644
index 2eb85621c635924c36e85dafcc2c2078d3c97e56..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/0/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.214567 9.80362e-30 0
-9.80362e-30 0.0106599 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0104814 2.4435e-30 0
-2.4435e-30 0.0717071 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.07707e-31 8.75336e-20 0
-8.75336e-20 1.54743e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-357.254 42.7769 -3.54063e-29
-42.7769 790.335 -2.12392e-30
-2.04725e-28 5.65788e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1451.52 -435.838 4.77623e-27
-Beff_: 4.15596 -0.776402 1.77034e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=357.254
-q2=790.335
-q3=224.213
-q12=42.7769
-q13=-3.54063e-29
-q23=-2.12392e-30
-q_onetwo=42.776900
-b1=4.155961
-b2=-0.776402
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.57254e+02 & 7.90335e+02 & 2.24213e+02 & 4.27769e+01 & -3.54063e-29 & -2.12392e-30 & 4.15596e+00 & -7.76402e-01 & 1.77034e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/BMatrix.txt
deleted file mode 100644
index 793152d09f66fa8fcb70aa938f03a38379473038..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.13442510329290425
-1 2 -0.761066391549365284
-1 3 -6.10068019675320299e-19
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/QMatrix.txt
deleted file mode 100644
index e1a50a255d8c2e481e11330819b4cf576d25c539..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 352.205529898235284
-1 2 42.6272984833696711
-1 3 6.73526718338729458e-17
-2 1 42.6272984833698629
-2 2 788.115619530062986
-2 3 -1.20414203781671336e-17
-3 1 -2.44538411872316508e-17
-3 2 -5.69477191098011204e-17
-3 3 221.657917731570791
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/perforated_wood_upper_log.txt
deleted file mode 100644
index 6e53f5a64f5fa170850185b6557381c2d2ce46b3..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/1/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.208951 -1.80991e-20 0
--1.80991e-20 0.0104445 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0104296 -1.10549e-20 0
--1.10549e-20 0.0720598 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-4.83005e-20 0.00158443 0
-0.00158443 6.68314e-21 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-352.206 42.6273 6.73527e-17
-42.6273 788.116 -1.20414e-17
--2.44538e-17 -5.69477e-17 221.658
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1423.73 -423.569 -1.92988e-16
-Beff_: 4.13443 -0.761066 -6.10068e-19 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=352.206
-q2=788.116
-q3=221.658
-q12=42.6273
-q13=6.73527e-17
-q23=-1.20414e-17
-q_onetwo=42.627298
-b1=4.134425
-b2=-0.761066
-b3=-0.000000
-mu_gamma=221.657918
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.52206e+02 & 7.88116e+02 & 2.21658e+02 & 4.26273e+01 & 6.73527e-17 & -1.20414e-17 & 4.13443e+00 & -7.61066e-01 & -6.10068e-19 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/BMatrix.txt
deleted file mode 100644
index c6d38d27a08e9a16906b8f8014e8c771e2129254..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.11505098866691288
-1 2 -0.749296713287428751
-1 3 -7.32826357717602112e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/QMatrix.txt
deleted file mode 100644
index cbc3e4b7222e8b3aa9f631006c68426abb2a3210..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 348.190067089190165
-1 2 42.6319483590075663
-1 3 2.4658145534109388e-16
-2 1 42.6319483590077368
-2 2 786.478246888986405
-2 3 7.86724201409794155e-17
-3 1 -1.74847929104021693e-16
-3 2 8.88639205623431572e-17
-3 3 219.764323824433177
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/perforated_wood_upper_log.txt
deleted file mode 100644
index 2edc78c6ded4a240773739d1908ef5ed0702f7ce..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/2/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.204475 -9.62772e-20 0
--9.62772e-20 0.0102534 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0105248 -2.53109e-20 0
--2.53109e-20 0.0723245 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--2.92089e-19 0.00275487 0
-0.00275487 -5.86464e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-348.19 42.6319 2.46581e-16
-42.6319 786.478 7.86724e-17
--1.74848e-16 8.88639e-17 219.764
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1400.88 -413.873 -1.6891e-14
-Beff_: 4.11505 -0.749297 -7.32826e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=348.19
-q2=786.478
-q3=219.764
-q12=42.6319
-q13=2.46581e-16
-q23=7.86724e-17
-q_onetwo=42.631948
-b1=4.115051
-b2=-0.749297
-b3=-0.000000
-mu_gamma=219.764324
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.48190e+02 & 7.86478e+02 & 2.19764e+02 & 4.26319e+01 & 2.46581e-16 & 7.86724e-17 & 4.11505e+00 & -7.49297e-01 & -7.32826e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/BMatrix.txt
deleted file mode 100644
index 62722e6009a92ab9e961e645abb937c09ba98a57..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.08050615456700694
-1 2 -0.73144242244332025
-1 3 -4.20314988069956106e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/QMatrix.txt
deleted file mode 100644
index 97f9779d38dc680fcf4f05d1024e1a6f5c65c0a2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 341.627629555911824
-1 2 42.7674134516251456
-1 3 -9.80525339741578073e-17
-2 1 42.7674134516250319
-2 2 784.093316263540828
-2 3 -1.06089182577706609e-16
-3 1 -1.32611478222133261e-16
-3 2 8.55977615177305751e-17
-3 3 217.009545182652829
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/perforated_wood_upper_log.txt
deleted file mode 100644
index 781ea8f13e5ea08e315b5b6983f36992823eb60a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/3/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.19714 -2.98785e-20 0
--2.98785e-20 0.00992025 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0108136 7.00252e-20 0
-7.00252e-20 0.0727161 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--2.43409e-19 0.00445286 0
-0.00445286 -3.57987e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-341.628 42.7674 -9.80525e-17
-42.7674 784.093 -1.06089e-16
--1.32611e-16 8.55978e-17 217.01
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1362.73 -399.006 -9.72497e-15
-Beff_: 4.08051 -0.731442 -4.20315e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=341.628
-q2=784.093
-q3=217.01
-q12=42.7674
-q13=-9.80525e-17
-q23=-1.06089e-16
-q_onetwo=42.767413
-b1=4.080506
-b2=-0.731442
-b3=-0.000000
-mu_gamma=217.009545
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.41628e+02 & 7.84093e+02 & 2.17010e+02 & 4.27674e+01 & -9.80525e-17 & -1.06089e-16 & 4.08051e+00 & -7.31442e-01 & -4.20315e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/BMatrix.txt
deleted file mode 100644
index 4c1a389a618639e6bbed6ce91290fdc0f3de88cb..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.06266367704278597
-1 2 -0.718825370832016808
-1 3 3.24433259090061982e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/QMatrix.txt
deleted file mode 100644
index 415bdde5de530ff4d3ea4df185d916b31764799c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 337.838538529932919
-1 2 42.6219015262391636
-1 3 -8.75344176483328074e-16
-2 1 42.6219015262392702
-2 2 782.293495386122913
-2 3 1.35958952429682256e-16
-3 1 2.72541321108543677e-17
-3 2 -1.18909873267347699e-16
-3 3 215.014871910282892
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/perforated_wood_upper_log.txt
deleted file mode 100644
index f33b0434496dde3c6f49ca117daa07a0f90e30dc..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/4/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.192887 4.66918e-19 0
-4.66918e-19 0.00976243 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0107474 -1.09949e-19 0
--1.09949e-19 0.0730012 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-3.45406e-19 0.00570009 0
-0.00570009 3.37319e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-337.839 42.6219 -8.75344e-16
-42.6219 782.293 1.35959e-16
-2.72541e-17 -1.1891e-16 215.015
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1341.89 -389.174 7.172e-15
-Beff_: 4.06266 -0.718825 3.24433e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=337.839
-q2=782.293
-q3=215.015
-q12=42.6219
-q13=-8.75344e-16
-q23=1.35959e-16
-q_onetwo=42.621902
-b1=4.062664
-b2=-0.718825
-b3=0.000000
-mu_gamma=215.014872
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.37839e+02 & 7.82293e+02 & 2.15015e+02 & 4.26219e+01 & -8.75344e-16 & 1.35959e-16 & 4.06266e+00 & -7.18825e-01 & 3.24433e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/BMatrix.txt
deleted file mode 100644
index 289c9a7ca93a6648863a970a1a45611457d525bf..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.04288253631956351
-1 2 -0.705185243526694983
-1 3 -6.84585736367396456e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/QMatrix.txt
deleted file mode 100644
index 04c88fc6a10b0e867cdb61d920c05bafd751e35c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 333.524228024803961
-1 2 42.4011555210887678
-1 3 2.12286785372661768e-16
-2 1 42.401155521088441
-2 2 780.338343855242897
-2 3 2.21719344273285657e-16
-3 1 3.67300590983776765e-16
-3 2 2.35813972515597214e-18
-3 3 212.665377706522094
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/perforated_wood_upper_log.txt
deleted file mode 100644
index 6e202f7007f5fb7d7aa6383934a9a437d3bc4d1f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/5/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.188057 -2.46985e-19 0
--2.46985e-19 0.00959183 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0106116 -1.39295e-19 0
--1.39295e-19 0.0733071 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.28709e-18 0.0071551 0
-0.0071551 -8.4942e-21 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-333.524 42.4012 2.12287e-16
-42.4012 780.338 2.21719e-16
-3.67301e-16 2.35814e-18 212.665
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1318.5 -378.86 -1.30755e-14
-Beff_: 4.04288 -0.705185 -6.84586e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=333.524
-q2=780.338
-q3=212.665
-q12=42.4012
-q13=2.12287e-16
-q23=2.21719e-16
-q_onetwo=42.401156
-b1=4.042883
-b2=-0.705185
-b3=-0.000000
-mu_gamma=212.665378
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.33524e+02 & 7.80338e+02 & 2.12665e+02 & 4.24012e+01 & 2.12287e-16 & 2.21719e-16 & 4.04288e+00 & -7.05185e-01 & -6.84586e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/BMatrix.txt
deleted file mode 100644
index 149ddc0dd2c3e2cc7d2abb1db74670bdca7d5ab8..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.01742880383738843
-1 2 -0.689493055535777
-1 3 -1.90486319366914336e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/QMatrix.txt
deleted file mode 100644
index 4e7f7be929ebdd44cae606791c2683c63d65424a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 328.49229649245774
-1 2 42.2259949799839731
-1 3 2.9292432195127116e-16
-2 1 42.2259949799840513
-2 2 778.156393812941815
-2 3 -5.34836931687099337e-16
-3 1 -4.87565716966731344e-16
-3 2 3.49329939974829529e-16
-3 3 210.160266174309385
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/parameter.txt
deleted file mode 100644
index df29ca67fc1a4e1876e08fc54fabc111c35df15c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/perforated_wood_upper_log.txt
deleted file mode 100644
index 8b9f956e24fd7220e687d3a9ddf09d1664393117..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_1/6/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.182388 -1.38955e-19 0
--1.38955e-19 0.00937824 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0105452 -5.7906e-20 0
--5.7906e-20 0.0736528 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.46323e-18 0.00870782 0
-0.00870782 -1.94894e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-328.492 42.226 2.92924e-16
-42.226 778.156 -5.34837e-16
--4.87566e-16 3.4933e-16 210.16
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1290.58 -366.894 -4.22323e-14
-Beff_: 4.01743 -0.689493 -1.90486e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=328.492
-q2=778.156
-q3=210.16
-q12=42.226
-q13=2.92924e-16
-q23=-5.34837e-16
-q_onetwo=42.225995
-b1=4.017429
-b2=-0.689493
-b3=-0.000000
-mu_gamma=210.160266
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.28492e+02 & 7.78156e+02 & 2.10160e+02 & 4.22260e+01 & 2.92924e-16 & -5.34837e-16 & 4.01743e+00 & -6.89493e-01 & -1.90486e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/BMatrix.txt
deleted file mode 100644
index be8657c5a7c7ec0fdcf0db4b7caa753e557a9c73..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.03873445069710524
-1 2 -1.05995320800370529
-1 3 1.36076669459033724e-29
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/QMatrix.txt
deleted file mode 100644
index 655f1ff64c6cb9651d8618f4c60a9a720c897fe2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 362.077597710087787
-1 2 38.6653780788820356
-1 3 7.65965450042136346e-29
-2 1 38.6653780788812682
-2 2 673.576799924798138
-2 3 2.35949529346769039e-29
-3 1 1.91929433331978192e-28
-3 2 5.49556981433154364e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/perforated_wood_upper_log.txt
deleted file mode 100644
index 23e4ac9988a480ac380211e83f971bdf72e55340..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/0/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.228051 8.83488e-30 0
-8.83488e-30 0.0120825 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0119521 2.30937e-30 0
-2.30937e-30 0.0967075 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-7.67493e-32 8.75336e-20 0
-8.75336e-20 1.40158e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-362.078 38.6654 7.65965e-29
-38.6654 673.577 2.3595e-29
-1.91929e-28 5.49557e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1421.35 -557.801 3.76792e-27
-Beff_: 4.03873 -1.05995 1.36077e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=362.078
-q2=673.577
-q3=224.213
-q12=38.6654
-q13=7.65965e-29
-q23=2.3595e-29
-q_onetwo=38.665378
-b1=4.038734
-b2=-1.059953
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.62078e+02 & 6.73577e+02 & 2.24213e+02 & 3.86654e+01 & 7.65965e-29 & 2.35950e-29 & 4.03873e+00 & -1.05995e+00 & 1.36077e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/BMatrix.txt
deleted file mode 100644
index 86ec8a93ba84c84b794702900d4e60d913d41501..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.02377345176769374
-1 2 -1.03211443248861734
-1 3 -7.26474377269934067e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/QMatrix.txt
deleted file mode 100644
index 08f28f4f305c344f3a72ee87156ee97945f0923a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 355.810139303233541
-1 2 38.5862517984604807
-1 3 3.6017534983147359e-16
-2 1 38.5862517984603386
-2 2 669.422764467591037
-2 3 1.63565450246594413e-16
-3 1 -2.22295326677418581e-16
-3 2 2.4947491988891457e-16
-3 3 220.118133157945493
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/perforated_wood_upper_log.txt
deleted file mode 100644
index 861b2c1c280760fff626801400aef70ca3788f89..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/1/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.221215 -1.59445e-19 0
--1.59445e-19 0.0118022 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.012096 -1.08659e-19 0
--1.08659e-19 0.0974249 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--3.89456e-19 0.00270105 0
-0.00270105 -9.359e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-355.81 38.5863 3.60175e-16
-38.5863 669.423 1.63565e-16
--2.22295e-16 2.49475e-16 220.118
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1391.87 -535.659 -1.7143e-14
-Beff_: 4.02377 -1.03211 -7.26474e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=355.81
-q2=669.423
-q3=220.118
-q12=38.5863
-q13=3.60175e-16
-q23=1.63565e-16
-q_onetwo=38.586252
-b1=4.023773
-b2=-1.032114
-b3=-0.000000
-mu_gamma=220.118133
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.55810e+02 & 6.69423e+02 & 2.20118e+02 & 3.85863e+01 & 3.60175e-16 & 1.63565e-16 & 4.02377e+00 & -1.03211e+00 & -7.26474e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/BMatrix.txt
deleted file mode 100644
index 89062208ec04b57f2e9a4d640f4337115a3cbc63..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.99757443016028047
-1 2 -1.00013271605385889
-1 3 -1.14935565289428614e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/QMatrix.txt
deleted file mode 100644
index 73bc0cba954fd29f78a9e01e95843e17ed82a184..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 347.182628314476574
-1 2 38.8187385592631458
-1 3 -7.29356353958154902e-16
-2 1 38.8187385592630108
-2 2 664.845609741155727
-2 3 1.42518375573219558e-16
-3 1 -5.93356743947004439e-16
-3 2 3.05446857043478737e-16
-3 3 215.022217543475278
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/perforated_wood_upper_log.txt
deleted file mode 100644
index 481fa7aad41739107d79f18668a224254ad334e6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/2/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.211687 3.26127e-19 0
-3.26127e-19 0.0113549 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0126416 -4.19497e-20 0
--4.19497e-20 0.098226 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--6.37825e-19 0.00603871 0
-0.00603871 -9.75697e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-347.183 38.8187 -7.29356e-16
-38.8187 664.846 1.42518e-16
--5.93357e-16 3.05447e-16 215.022
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1349.06 -509.753 -2.73912e-14
-Beff_: 3.99757 -1.00013 -1.14936e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=347.183
-q2=664.846
-q3=215.022
-q12=38.8187
-q13=-7.29356e-16
-q23=1.42518e-16
-q_onetwo=38.818739
-b1=3.997574
-b2=-1.000133
-b3=-0.000000
-mu_gamma=215.022218
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.47183e+02 & 6.64846e+02 & 2.15022e+02 & 3.88187e+01 & -7.29356e-16 & 1.42518e-16 & 3.99757e+00 & -1.00013e+00 & -1.14936e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/BMatrix.txt
deleted file mode 100644
index 1108602b7fce80b0a07903c04dbdbf619b24ba1d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.98757882012712583
-1 2 -0.97733387105430658
-1 3 -2.11608364322198754e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/QMatrix.txt
deleted file mode 100644
index 3f19bac74e24fe1cfa8c6372c0eddc1fc9620aa5..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 342.606918624207992
-1 2 38.4769635042124349
-1 3 -8.10007443063920363e-16
-2 1 38.4769635042122005
-2 2 661.441768602280263
-2 3 5.10171332263054111e-16
-3 1 -8.61127575496611897e-16
-3 2 7.03565894780155965e-16
-3 3 211.378527346908072
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/perforated_wood_upper_log.txt
deleted file mode 100644
index b5a87e41d26b30156cff8eeee4406f1ae4d92d7f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/3/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.206599 4.60914e-19 0
-4.60914e-19 0.0111937 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0124401 -3.63618e-19 0
--3.63618e-19 0.0987998 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.17488e-18 0.00845973 0
-0.00845973 -2.34817e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-342.607 38.477 -8.10007e-16
-38.477 661.442 5.10171e-16
--8.61128e-16 7.03566e-16 211.379
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1328.57 -493.02 -4.88509e-14
-Beff_: 3.98758 -0.977334 -2.11608e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=342.607
-q2=661.442
-q3=211.379
-q12=38.477
-q13=-8.10007e-16
-q23=5.10171e-16
-q_onetwo=38.476964
-b1=3.987579
-b2=-0.977334
-b3=-0.000000
-mu_gamma=211.378527
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.42607e+02 & 6.61442e+02 & 2.11379e+02 & 3.84770e+01 & -8.10007e-16 & 5.10171e-16 & 3.98758e+00 & -9.77334e-01 & -2.11608e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/BMatrix.txt
deleted file mode 100644
index 824cd5b5d4ec033901c23ebee14ec03253938d87..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.97974557013765562
-1 2 -0.95737789458995004
-1 3 -8.48359863034261441e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/QMatrix.txt
deleted file mode 100644
index bb2ca72ed3cf9db4de3f655281f296915057d563..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 338.531947870258421
-1 2 38.0781946817730557
-1 3 6.15989464297639344e-16
-2 1 38.0781946817725228
-2 2 658.446948090768501
-2 3 8.23072079242370691e-16
-3 1 1.07273673451147022e-15
-3 2 2.47523355978440662e-16
-3 3 207.261751962500597
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/perforated_wood_upper_log.txt
deleted file mode 100644
index 9c5d777f60d2548d99697c7fdc3a8eb863033228..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/4/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.202073 -3.39597e-19 0
--3.39597e-19 0.0110662 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0121503 -3.70583e-19 0
--3.70583e-19 0.099298 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--2.63287e-18 0.0111751 0
-0.0111751 -2.37248e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-338.532 38.0782 6.15989e-16
-38.0782 658.447 8.23072e-16
-1.07274e-15 2.47523e-16 207.262
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1310.82 -478.841 -1.3551e-14
-Beff_: 3.97975 -0.957378 -8.4836e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=338.532
-q2=658.447
-q3=207.262
-q12=38.0782
-q13=6.15989e-16
-q23=8.23072e-16
-q_onetwo=38.078195
-b1=3.979746
-b2=-0.957378
-b3=-0.000000
-mu_gamma=207.261752
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.38532e+02 & 6.58447e+02 & 2.07262e+02 & 3.80782e+01 & 6.15989e-16 & 8.23072e-16 & 3.97975e+00 & -9.57378e-01 & -8.48360e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/BMatrix.txt
deleted file mode 100644
index 182d4eeecb0a5352b6f3104b5ce5af1943f6b62c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.95446460518779697
-1 2 -0.926667684659633895
-1 3 -1.40441385234805723e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/QMatrix.txt
deleted file mode 100644
index fce7e3d36c15739523f8ce0c6e6ee9e9f428fe9b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 330.831533962576202
-1 2 38.05150103565704
-1 3 1.14616432664305101e-15
-2 1 38.0515010356566137
-2 2 654.161970082551989
-2 3 1.13797860024078545e-15
-3 1 1.05940104778989852e-15
-3 2 7.50213693251344793e-16
-3 3 202.772513340456413
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/perforated_wood_upper_log.txt
deleted file mode 100644
index c219b292a98b4f93906d08685bccef69670cd04b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/5/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.193383 -6.04574e-19 0
--6.04574e-19 0.0106989 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0123916 -6.98207e-19 0
--6.98207e-19 0.100038 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.26523e-18 0.0141215 0
-0.0141215 -1.33292e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-330.832 38.0515 1.14616e-15
-38.0515 654.162 1.13798e-15
-1.0594e-15 7.50214e-16 202.773
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1273 -455.717 -2.49835e-14
-Beff_: 3.95446 -0.926668 -1.40441e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=330.832
-q2=654.162
-q3=202.773
-q12=38.0515
-q13=1.14616e-15
-q23=1.13798e-15
-q_onetwo=38.051501
-b1=3.954465
-b2=-0.926668
-b3=-0.000000
-mu_gamma=202.772513
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.30832e+02 & 6.54162e+02 & 2.02773e+02 & 3.80515e+01 & 1.14616e-15 & 1.13798e-15 & 3.95446e+00 & -9.26668e-01 & -1.40441e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/BMatrix.txt
deleted file mode 100644
index c3b8d1b6b7c9d4444b51fdeaeee7538c7c11850c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.9433016908575671
-1 2 -0.903758032287096058
-1 3 -1.63589735484389128e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/QMatrix.txt
deleted file mode 100644
index 56950f142d6b5039d8a49195591480adc31d04a0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 326.311455994734445
-1 2 37.6594087896928968
-1 3 -8.40541286746543381e-16
-2 1 37.6594087896925203
-2 2 650.843627093951568
-2 3 6.357761539454998e-16
-3 1 1.08311797031301893e-16
-3 2 1.71596677839280787e-15
-3 3 198.773755124234498
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/perforated_wood_upper_log.txt
deleted file mode 100644
index 1bb42bb823ca853d129b3fbd1df832b51972610f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_2/6/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.188276 6.45669e-19 0
-6.45669e-19 0.010546 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0121211 -2.52801e-19 0
--2.52801e-19 0.100595 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--6.5818e-19 0.0167807 0
-0.0167807 -3.08629e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-326.311 37.6594 -8.40541e-16
-37.6594 650.844 6.35776e-16
-1.08312e-16 1.71597e-15 198.774
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1252.71 -439.703 -3.36411e-14
-Beff_: 3.9433 -0.903758 -1.6359e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=326.311
-q2=650.844
-q3=198.774
-q12=37.6594
-q13=-8.40541e-16
-q23=6.35776e-16
-q_onetwo=37.659409
-b1=3.943302
-b2=-0.903758
-b3=-0.000000
-mu_gamma=198.773755
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.26311e+02 & 6.50844e+02 & 1.98774e+02 & 3.76594e+01 & -8.40541e-16 & 6.35776e-16 & 3.94330e+00 & -9.03758e-01 & -1.63590e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/BMatrix.txt
deleted file mode 100644
index 29f046f95765f89baf0b3926693da51f9fa1cd71..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.38385954774598163
-1 2 -1.4580752040276912
-1 3 6.56599696043288159e-30
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/QMatrix.txt
deleted file mode 100644
index e37cbac73f60b005f3262687867e554af818225a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 362.884400627699449
-1 2 33.598217280456808
-1 3 2.66764408456964812e-29
-2 1 33.5982172804586838
-2 2 535.044060612796784
-2 3 -9.76610185849601493e-30
-3 1 1.41209476925862098e-28
-3 2 5.2699761983748409e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/perforated_wood_upper_log.txt
deleted file mode 100644
index a196c459b6f8346156aaddc6c15a94da6e9864e4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/0/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.226315 4.74252e-30 0
-4.74252e-30 0.0133775 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0133074 2.25105e-30 0
-2.25105e-30 0.133677 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-3.78604e-32 8.75336e-20 0
-8.75336e-20 8.16086e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-362.884 33.5982 2.66764e-29
-33.5982 535.044 -9.7661e-30
-1.41209e-28 5.26998e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1178.96 -666.443 1.87317e-27
-Beff_: 3.38386 -1.45808 6.566e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=362.884
-q2=535.044
-q3=224.213
-q12=33.5982
-q13=2.66764e-29
-q23=-9.7661e-30
-q_onetwo=33.598217
-b1=3.383860
-b2=-1.458075
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.62884e+02 & 5.35044e+02 & 2.24213e+02 & 3.35982e+01 & 2.66764e-29 & -9.76610e-30 & 3.38386e+00 & -1.45808e+00 & 6.56600e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/BMatrix.txt
deleted file mode 100644
index b7b96f770fafb314b2705b28efadc67eb10d5522..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.39464385395850465
-1 2 -1.39780905619579343
-1 3 -6.1157192498742141e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/QMatrix.txt
deleted file mode 100644
index f179d0cbf4d877174b2bb097a4953763eb1c5a7b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 350.335508396627233
-1 2 33.6525131410389875
-1 3 -1.37137344665902439e-15
-2 1 33.6525131410388951
-2 2 524.418402685342585
-2 3 5.51967326012370307e-16
-3 1 4.75829228449575758e-17
-3 2 1.72713406076940856e-16
-3 3 215.364975192733624
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/perforated_wood_upper_log.txt
deleted file mode 100644
index 5833696735f9fa9af62f804412d01ee73d7b2543..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/1/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.215069 1.14465e-18 0
-1.14465e-18 0.0128671 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0140776 -3.28962e-19 0
--3.28962e-19 0.135739 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--4.25768e-19 0.00637426 0
-0.00637426 -9.93355e-20 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-350.336 33.6525 -1.37137e-15
-33.6525 524.418 5.51967e-16
-4.75829e-17 1.72713e-16 215.365
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1142.22 -618.798 -1.3251e-14
-Beff_: 3.39464 -1.39781 -6.11572e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=350.336
-q2=524.418
-q3=215.365
-q12=33.6525
-q13=-1.37137e-15
-q23=5.51967e-16
-q_onetwo=33.652513
-b1=3.394644
-b2=-1.397809
-b3=-0.000000
-mu_gamma=215.364975
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.50336e+02 & 5.24418e+02 & 2.15365e+02 & 3.36525e+01 & -1.37137e-15 & 5.51967e-16 & 3.39464e+00 & -1.39781e+00 & -6.11572e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/BMatrix.txt
deleted file mode 100644
index 155abd3c1066188ac9bc92e9c6f99ea00083da04..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.40075937921618188
-1 2 -1.34332250644236861
-1 3 9.00920865929376997e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/QMatrix.txt
deleted file mode 100644
index 00491eb236cbffe212550b04d3b4c9a9cf8d25c8..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 339.958119372016711
-1 2 33.4485153108648063
-1 3 -1.6669879452507752e-15
-2 1 33.4485153108644582
-2 2 515.171934755594293
-2 3 -7.1145346558498801e-16
-3 1 1.53875393330005217e-15
-3 2 -7.21970226658097403e-16
-3 3 206.182025376447143
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/perforated_wood_upper_log.txt
deleted file mode 100644
index 1ea2fd4bb3c9eb374dc6a71b23f28064df4960e6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/2/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.205245 1.11051e-18 0
-1.11051e-18 0.0124684 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0144728 3.31827e-19 0
-3.31827e-19 0.137519 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.80632e-18 0.0130176 0
-0.0130176 3.05636e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-339.958 33.4485 -1.66699e-15
-33.4485 515.172 -7.11453e-16
-1.53875e-15 -7.2197e-16 206.182
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1111.18 -578.292 2.47781e-14
-Beff_: 3.40076 -1.34332 9.00921e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=339.958
-q2=515.172
-q3=206.182
-q12=33.4485
-q13=-1.66699e-15
-q23=-7.11453e-16
-q_onetwo=33.448515
-b1=3.400759
-b2=-1.343323
-b3=0.000000
-mu_gamma=206.182025
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.39958e+02 & 5.15172e+02 & 2.06182e+02 & 3.34485e+01 & -1.66699e-15 & -7.11453e-16 & 3.40076e+00 & -1.34332e+00 & 9.00921e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/BMatrix.txt
deleted file mode 100644
index b24548e7b116cb013c6f4b62e130b29d349264d5..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.40695240408272948
-1 2 -1.28900297488421911
-1 3 -1.70540029873929896e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/QMatrix.txt
deleted file mode 100644
index 7f93b994e293a3872bb0dfe21caded233b364e76..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 330.611925325416792
-1 2 32.8514773147708894
-1 3 1.039207782327356e-16
-2 1 32.8514773147708041
-2 2 506.221137494260461
-2 3 7.37907998593634318e-16
-3 1 -1.15229006891759411e-15
-3 2 8.42858768890231147e-16
-3 3 196.299556573179387
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/perforated_wood_upper_log.txt
deleted file mode 100644
index 8c22240170b107219aa364728032e42e9982ba9d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/3/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.196113 -5.92073e-20 0
--5.92073e-20 0.0121742 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0143594 -4.01451e-19 0
--4.01451e-19 0.139224 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--2.69295e-18 0.0201865 0
-0.0201865 -2.50247e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-330.612 32.8515 1.03921e-16
-32.8515 506.221 7.37908e-16
--1.15229e-15 8.42859e-16 196.3
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1084.03 -540.597 -3.84892e-14
-Beff_: 3.40695 -1.289 -1.7054e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=330.612
-q2=506.221
-q3=196.3
-q12=32.8515
-q13=1.03921e-16
-q23=7.37908e-16
-q_onetwo=32.851477
-b1=3.406952
-b2=-1.289003
-b3=-0.000000
-mu_gamma=196.299557
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.30612e+02 & 5.06221e+02 & 1.96300e+02 & 3.28515e+01 & 1.03921e-16 & 7.37908e-16 & 3.40695e+00 & -1.28900e+00 & -1.70540e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/BMatrix.txt
deleted file mode 100644
index 181de2b009567cd9c82c786e890c3404aac14d24..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.41450724731424904
-1 2 -1.22877476553790377
-1 3 -2.43365513870715063e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/QMatrix.txt
deleted file mode 100644
index 00d3763e25dfab6963bfbf2fe0ab24cac82f0706..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 321.243547030319235
-1 2 31.7759780748884992
-1 3 1.20935976077179985e-15
-2 1 31.7759780748880658
-2 2 496.601023868031064
-2 3 3.64042563455457824e-15
-3 1 1.52850822277006415e-15
-3 2 1.16736047911514262e-15
-3 3 184.812501038148838
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/perforated_wood_upper_log.txt
deleted file mode 100644
index b42aad93a14175aa297693ba5c3e4125af5f4307..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/4/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.186662 -4.92101e-19 0
--4.92101e-19 0.0119553 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0137036 -2.42243e-18 0
--2.42243e-18 0.141038 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--5.86314e-18 0.0285596 0
-0.0285596 -3.67591e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-321.244 31.776 1.20936e-15
-31.776 496.601 3.64043e-15
-1.52851e-15 1.16736e-15 184.813
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1057.84 -501.711 -4.11923e-14
-Beff_: 3.41451 -1.22877 -2.43366e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=321.244
-q2=496.601
-q3=184.813
-q12=31.776
-q13=1.20936e-15
-q23=3.64043e-15
-q_onetwo=31.775978
-b1=3.414507
-b2=-1.228775
-b3=-0.000000
-mu_gamma=184.812501
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.21244e+02 & 4.96601e+02 & 1.84813e+02 & 3.17760e+01 & 1.20936e-15 & 3.64043e-15 & 3.41451e+00 & -1.22877e+00 & -2.43366e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/BMatrix.txt
deleted file mode 100644
index 88ba2b4838bc5dd8d4e2078bb7c55dd769e7a74a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.41540551912849732
-1 2 -1.17764773520423716
-1 3 -5.16818756679569065e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/QMatrix.txt
deleted file mode 100644
index ab413c8561f7c0246b02e22ef2d8bb27d601d430..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 312.04495452059524
-1 2 31.2127302159720621
-1 3 1.10365004895446317e-16
-2 1 31.2127302159718774
-2 2 488.84302442329323
-2 3 2.29840018545202085e-15
-3 1 1.92727778181023268e-15
-3 2 3.80338122107914955e-16
-3 3 175.775898189916944
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/perforated_wood_upper_log.txt
deleted file mode 100644
index fc7e61ced79b9e817c722e0565b74050336b392a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/5/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.177012 3.54168e-20 0
-3.54168e-20 0.0116374 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0135569 -1.0986e-18 0
--1.0986e-18 0.142519 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--3.23897e-18 0.0351179 0
-0.0351179 6.79919e-21 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-312.045 31.2127 1.10365e-16
-31.2127 488.843 2.2984e-15
-1.92728e-15 3.80338e-16 175.776
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1029 -469.081 -2.9499e-15
-Beff_: 3.41541 -1.17765 -5.16819e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=312.045
-q2=488.843
-q3=175.776
-q12=31.2127
-q13=1.10365e-16
-q23=2.2984e-15
-q_onetwo=31.212730
-b1=3.415406
-b2=-1.177648
-b3=-0.000000
-mu_gamma=175.775898
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.12045e+02 & 4.88843e+02 & 1.75776e+02 & 3.12127e+01 & 1.10365e-16 & 2.29840e-15 & 3.41541e+00 & -1.17765e+00 & -5.16819e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/BMatrix.txt
deleted file mode 100644
index a5d953a1821b7bb9d0b2cd0df70cc4956aa8a371..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.4214232290988793
-1 2 -1.12609856275354803
-1 3 -1.54012851387092775e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/QMatrix.txt
deleted file mode 100644
index c34822af4294e9febff4c94041236a619b0dabcf..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 305.383628906016497
-1 2 30.0252173849794275
-1 3 1.23000025963049264e-15
-2 1 30.0252173849790012
-2 2 481.058350591651958
-2 3 1.34224228953705449e-15
-3 1 3.16652086496116425e-15
-3 2 1.25745767964868804e-15
-3 3 164.622781415592755
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/parameter.txt
deleted file mode 100644
index a7297f96dd45c411563af48a17333b00179873f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/perforated_wood_upper_log.txt
deleted file mode 100644
index dacd86f92f1cfacd5b517defb256c18dc4750a1e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_3/6/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.169928 -8.9274e-19 0
--8.9274e-19 0.0115478 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.012549 -7.29558e-19 0
--7.29558e-19 0.143973 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--5.99142e-18 0.0433121 0
-0.0433121 -2.02816e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-305.384 30.0252 1.23e-15
-30.0252 481.058 1.34224e-15
-3.16652e-15 1.25746e-15 164.623
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1011.04 -438.99 -1.5936e-14
-Beff_: 3.42142 -1.1261 -1.54013e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=305.384
-q2=481.058
-q3=164.623
-q12=30.0252
-q13=1.23e-15
-q23=1.34224e-15
-q_onetwo=30.025217
-b1=3.421423
-b2=-1.126099
-b3=-0.000000
-mu_gamma=164.622781
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.05384e+02 & 4.81058e+02 & 1.64623e+02 & 3.00252e+01 & 1.23000e-15 & 1.34224e-15 & 3.42142e+00 & -1.12610e+00 & -1.54013e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/BMatrix.txt
deleted file mode 100644
index cf985a30eec284ccfb47a20e95b7be9188929eda..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.66483564170735132
-1 2 -1.79630256913598552
-1 3 4.21524999060086665e-30
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/QMatrix.txt
deleted file mode 100644
index 4a9637791f9660e319dd9c2c48cf0c28e5488883..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 373.387124642992148
-1 2 30.7757080923943889
-1 3 -2.37028050115625891e-29
-2 1 30.775708092396453
-2 2 448.128969415925155
-2 3 1.50199183761628701e-29
-3 1 1.20071502034347367e-28
-3 2 5.43021142564616303e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/perforated_wood_upper_log.txt
deleted file mode 100644
index f4172fa32c2016934adf939bcc038327f5941ce6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/0/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.210626 4.03909e-30 0
-4.03909e-30 0.0139554 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0139207 2.21589e-30 0
-2.21589e-30 0.165225 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.46285e-32 8.75336e-20 0
-8.75336e-20 5.29448e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-373.387 30.7757 -2.37028e-29
-30.7757 448.129 1.50199e-29
-1.20072e-28 5.43021e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 939.733 -722.963 1.16754e-27
-Beff_: 2.66484 -1.7963 4.21525e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=373.387
-q2=448.129
-q3=224.213
-q12=30.7757
-q13=-2.37028e-29
-q23=1.50199e-29
-q_onetwo=30.775708
-b1=2.664836
-b2=-1.796303
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.73387e+02 & 4.48129e+02 & 2.24213e+02 & 3.07757e+01 & -2.37028e-29 & 1.50199e-29 & 2.66484e+00 & -1.79630e+00 & 4.21525e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/BMatrix.txt
deleted file mode 100644
index 8ef5e785179f54efa5c13e858a8e3b1a088ef731..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.72842834946343116
-1 2 -1.71510501811600702
-1 3 -1.13887732938608317e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/QMatrix.txt
deleted file mode 100644
index 426502388e89fa692c990a53e817cff6760cf7f7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 352.015046544344955
-1 2 30.6506546140377303
-1 3 -1.35385680530980546e-15
-2 1 30.6506546140377729
-2 2 429.414420749313535
-2 3 3.45535232371130263e-16
-3 1 -5.49039980146659445e-16
-3 2 3.08238677637628911e-16
-3 3 210.404710571575862
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/perforated_wood_upper_log.txt
deleted file mode 100644
index 550b504e7db977dd65dcbe5bf9f0c1cb6d8b0ae9..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/1/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.19763 1.01892e-18 0
-1.01892e-18 0.0133576 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0152367 -2.38909e-19 0
--2.38909e-19 0.169308 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.22392e-18 0.0107283 0
-0.0107283 -1.59637e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-352.015 30.6507 -1.35386e-15
-30.6507 429.414 3.45535e-16
--5.4904e-16 3.08239e-16 210.405
-
-------------------------
---- Prestrain Output ---
-Bhat_: 907.879 -652.863 -2.59892e-14
-Beff_: 2.72843 -1.71511 -1.13888e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=352.015
-q2=429.414
-q3=210.405
-q12=30.6507
-q13=-1.35386e-15
-q23=3.45535e-16
-q_onetwo=30.650655
-b1=2.728428
-b2=-1.715105
-b3=-0.000000
-mu_gamma=210.404711
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.52015e+02 & 4.29414e+02 & 2.10405e+02 & 3.06507e+01 & -1.35386e-15 & 3.45535e-16 & 2.72843e+00 & -1.71511e+00 & -1.13888e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/BMatrix.txt
deleted file mode 100644
index a3c2ce7a70d6f6bdff1ea34e5faafd0080836a0b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.77583637707342934
-1 2 -1.6356527828754206
-1 3 -3.18768078138547899e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/QMatrix.txt
deleted file mode 100644
index 62f938bc5a03f3206409baffc0b8aac369ae40a8..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 335.603958058077353
-1 2 29.6976473848427744
-1 3 9.49042819158030238e-16
-2 1 29.6976473848427034
-2 2 412.587832091221969
-2 3 1.61470229548266175e-15
-3 1 -7.34113290989935052e-16
-3 2 1.73472347597680709e-15
-3 3 193.975426554225066
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/perforated_wood_upper_log.txt
deleted file mode 100644
index 5e11517ccff59a6dbd2950e3500c8c314f611251..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/2/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.186318 -8.78858e-19 0
--8.78858e-19 0.0130091 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0154031 -1.1756e-18 0
--1.1756e-18 0.172928 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--2.87499e-18 0.0236536 0
-0.0236536 -5.1461e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-335.604 29.6976 9.49043e-16
-29.6976 412.588 1.6147e-15
--7.34113e-16 1.73472e-15 193.975
-
-------------------------
---- Prestrain Output ---
-Bhat_: 883.007 -592.415 -6.67084e-14
-Beff_: 2.77584 -1.63565 -3.18768e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=335.604
-q2=412.588
-q3=193.975
-q12=29.6976
-q13=9.49043e-16
-q23=1.6147e-15
-q_onetwo=29.697647
-b1=2.775836
-b2=-1.635653
-b3=-0.000000
-mu_gamma=193.975427
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.35604e+02 & 4.12588e+02 & 1.93975e+02 & 2.96976e+01 & 9.49043e-16 & 1.61470e-15 & 2.77584e+00 & -1.63565e+00 & -3.18768e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/BMatrix.txt
deleted file mode 100644
index 05dec83692646343db309a7a93bca0e737f55855..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.81639032538744649
-1 2 -1.55208705952154413
-1 3 -9.56667849998420272e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/QMatrix.txt
deleted file mode 100644
index b9c6df1c532cacbdd5ba3601399c45332d5b6f24..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 321.75440547307403
-1 2 28.1515506663391015
-1 3 -5.09070867057981324e-15
-2 1 28.1515506663388173
-2 2 396.439738111100155
-2 3 1.1247513337364623e-15
-3 1 -1.93465035658313411e-15
-3 2 2.38567846033710396e-15
-3 3 177.009809364907568
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/perforated_wood_upper_log.txt
deleted file mode 100644
index 0b6060ff0acc5b5b88a74b7f125326e24dab3363..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/3/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.175919 4.17416e-18 0
-4.17416e-18 0.0128299 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0147476 -6.19557e-19 0
--6.19557e-19 0.176386 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--3.05866e-18 0.037176 0
-0.037176 -3.90345e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-321.754 28.1516 -5.09071e-15
-28.1516 396.44 1.12475e-15
--1.93465e-15 2.38568e-15 177.01
-
-------------------------
---- Prestrain Output ---
-Bhat_: 862.492 -536.023 -2.60855e-14
-Beff_: 2.81639 -1.55209 -9.56668e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=321.754
-q2=396.44
-q3=177.01
-q12=28.1516
-q13=-5.09071e-15
-q23=1.12475e-15
-q_onetwo=28.151551
-b1=2.816390
-b2=-1.552087
-b3=-0.000000
-mu_gamma=177.009809
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.21754e+02 & 3.96440e+02 & 1.77010e+02 & 2.81516e+01 & -5.09071e-15 & 1.12475e-15 & 2.81639e+00 & -1.55209e+00 & -9.56668e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/BMatrix.txt
deleted file mode 100644
index a8d9aadba3386b9921e5be4add85b81c07d8ed70..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.85479834918858755
-1 2 -1.46601145892171303
-1 3 -1.93770698195683035e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/QMatrix.txt
deleted file mode 100644
index 49d37ffb7b124f9c3fcd3363e754fd33215b4ad4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 307.250229504379888
-1 2 26.6630047664167122
-1 3 -4.76540736125269371e-15
-2 1 26.6630047664166234
-2 2 381.155206059032992
-2 3 1.44914462374412523e-15
-3 1 -3.94454434393676223e-15
-3 2 8.803721640582296e-16
-3 3 159.59134007818102
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/perforated_wood_upper_log.txt
deleted file mode 100644
index 289188b51ec586a1b27906f0a18be43e342a8c6c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/4/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.163896 3.93416e-18 0
-3.93416e-18 0.0125785 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0140495 -9.16052e-19 0
--9.16052e-19 0.179666 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.56641e-18 0.0511248 0
-0.0511248 -3.82233e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-307.25 26.663 -4.76541e-15
-26.663 381.155 1.44914e-15
--3.94454e-15 8.80372e-16 159.591
-
-------------------------
---- Prestrain Output ---
-Bhat_: 838.049 -482.66 -4.34756e-14
-Beff_: 2.8548 -1.46601 -1.93771e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=307.25
-q2=381.155
-q3=159.591
-q12=26.663
-q13=-4.76541e-15
-q23=1.44914e-15
-q_onetwo=26.663005
-b1=2.854798
-b2=-1.466011
-b3=-0.000000
-mu_gamma=159.591340
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.07250e+02 & 3.81155e+02 & 1.59591e+02 & 2.66630e+01 & -4.76541e-15 & 1.44914e-15 & 2.85480e+00 & -1.46601e+00 & -1.93771e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/BMatrix.txt
deleted file mode 100644
index 2bc890245caa171038bda3207e1ad671f6eb3175..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.88319240044684388
-1 2 -1.39426637648585916
-1 3 1.74906808466104268e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/QMatrix.txt
deleted file mode 100644
index d0c22f1eb864f8266883b8ef89df2166a15a4bc7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 296.573207401094123
-1 2 25.1122945899925085
-1 3 -6.58408874296134705e-16
-2 1 25.1122945899920857
-2 2 369.236802748597881
-2 3 -2.05239471251505989e-15
-3 1 4.17200995972422106e-15
-3 2 -1.15510899456605642e-15
-3 3 144.619279683215865
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/perforated_wood_upper_log.txt
deleted file mode 100644
index a4ea92856943385260496120f62397cd20ce77d1..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/5/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.154396 7.21716e-19 0
-7.21716e-19 0.0124597 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0129253 1.33594e-18 0
-1.33594e-18 0.182201 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--9.74693e-18 0.0631464 0
-0.0631464 7.96082e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-296.573 25.1123 -6.58409e-16
-25.1123 369.237 -2.05239e-15
-4.17201e-15 -1.15511e-15 144.619
-
-------------------------
---- Prestrain Output ---
-Bhat_: 820.064 -442.411 3.89341e-14
-Beff_: 2.88319 -1.39427 1.74907e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=296.573
-q2=369.237
-q3=144.619
-q12=25.1123
-q13=-6.58409e-16
-q23=-2.05239e-15
-q_onetwo=25.112295
-b1=2.883192
-b2=-1.394266
-b3=0.000000
-mu_gamma=144.619280
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.96573e+02 & 3.69237e+02 & 1.44619e+02 & 2.51123e+01 & -6.58409e-16 & -2.05239e-15 & 2.88319e+00 & -1.39427e+00 & 1.74907e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/BMatrix.txt
deleted file mode 100644
index e9e567790e16123aede7f6ac0a6bac93645dca9f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.91359694498981536
-1 2 -1.30765195122041744
-1 3 5.14673481338230188e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/QMatrix.txt
deleted file mode 100644
index 2b66e09e47671b92442629ea03408a58c3e7a9cc..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 282.830748165004252
-1 2 23.5800196165115423
-1 3 -2.72850318727702046e-15
-2 1 23.5800196165115956
-2 2 355.940441861028489
-2 3 -6.73506389547995354e-16
-3 1 1.76649059963063237e-15
-3 2 -2.01444763647806724e-16
-3 3 127.850912313532632
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/parameter.txt
deleted file mode 100644
index 0b7599f37fe80b4c5af8039d95a431bedeb42057..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/perforated_wood_upper_log.txt
deleted file mode 100644
index b940fa689a82235d0cd74619f4a74a77a5a78cbd..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_4/6/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.141195 2.29074e-18 0
-2.29074e-18 0.0121828 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.011898 4.46199e-19 0
-4.46199e-19 0.185053 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--4.0585e-18 0.076655 0
-0.076655 4.45182e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-282.831 23.58 -2.7285e-15
-23.58 355.94 -6.73506e-16
-1.76649e-15 -2.01445e-16 127.851
-
-------------------------
---- Prestrain Output ---
-Bhat_: 793.22 -396.744 1.19904e-14
-Beff_: 2.9136 -1.30765 5.14673e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=282.831
-q2=355.94
-q3=127.851
-q12=23.58
-q13=-2.7285e-15
-q23=-6.73506e-16
-q_onetwo=23.580020
-b1=2.913597
-b2=-1.307652
-b3=0.000000
-mu_gamma=127.850912
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.82831e+02 & 3.55940e+02 & 1.27851e+02 & 2.35800e+01 & -2.72850e-15 & -6.73506e-16 & 2.91360e+00 & -1.30765e+00 & 5.14673e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/BMatrix.txt
deleted file mode 100644
index fe91116a66419140efcfa10e10a57b8649f812fe..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.16105074507935901
-1 2 -1.98344337231396772
-1 3 2.57091952786952586e-30
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/QMatrix.txt
deleted file mode 100644
index 4b39868fc16ffde1fb3c56a29652891f988e3867..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 392.349438313312987
-1 2 30.0048996530020879
-1 3 7.23841510298498723e-30
-2 1 30.0048996530034842
-2 2 408.259132159441322
-2 3 1.7046791123760302e-29
-3 1 9.62934661366485363e-29
-3 2 5.3155620009550965e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/perforated_wood_upper_log.txt
deleted file mode 100644
index 7b23e855a378beb2a618a6c315b373a59da5242f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/0/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.194908 4.70518e-30 0
-4.70518e-30 0.0140927 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0140835 1.635e-30 0
-1.635e-30 0.184932 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.58978e-32 8.75336e-20 0
-8.75336e-20 2.01554e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-392.349 30.0049 7.23842e-30
-30.0049 408.259 1.70468e-29
-9.62935e-29 5.31556e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 788.374 -744.917 6.79097e-28
-Beff_: 2.16105 -1.98344 2.57092e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=392.349
-q2=408.259
-q3=224.213
-q12=30.0049
-q13=7.23842e-30
-q23=1.70468e-29
-q_onetwo=30.004900
-b1=2.161051
-b2=-1.983443
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.92349e+02 & 4.08259e+02 & 2.24213e+02 & 3.00049e+01 & 7.23842e-30 & 1.70468e-29 & 2.16105e+00 & -1.98344e+00 & 2.57092e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/BMatrix.txt
deleted file mode 100644
index 092530f0d8c71a4f91e5f22374713c0b00c60af0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.23160521945286439
-1 2 -1.91334790361761331
-1 3 -7.57149462266542763e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/QMatrix.txt
deleted file mode 100644
index bb0929eca7011e40491feefdf4a82f846e2c5668..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 362.687769809739336
-1 2 29.6990270195989297
-1 3 -2.60322362624632042e-15
-2 1 29.6990270196001767
-2 2 383.000901065517837
-2 3 1.29215214916822418e-15
-3 1 -2.2488521461694333e-15
-3 2 5.51804695686497482e-16
-3 3 205.866189919680295
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/perforated_wood_upper_log.txt
deleted file mode 100644
index 79bf6df91b2b34ab01ea5990f56154613e059089..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/1/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.176945 2.14973e-18 0
-2.14973e-18 0.013266 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0151414 -7.43633e-19 0
--7.43633e-19 0.190607 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.73746e-20 0.0139975 0
-0.0139975 -3.326e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-362.688 29.699 -2.60322e-15
-29.699 383.001 1.29215e-15
--2.24885e-15 5.51805e-16 205.866
-
-------------------------
---- Prestrain Output ---
-Bhat_: 752.551 -666.537 -2.16615e-14
-Beff_: 2.23161 -1.91335 -7.57149e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=362.688
-q2=383.001
-q3=205.866
-q12=29.699
-q13=-2.60322e-15
-q23=1.29215e-15
-q_onetwo=29.699027
-b1=2.231605
-b2=-1.913348
-b3=-0.000000
-mu_gamma=205.866190
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.62688e+02 & 3.83001e+02 & 2.05866e+02 & 2.96990e+01 & -2.60322e-15 & 1.29215e-15 & 2.23161e+00 & -1.91335e+00 & -7.57149e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/BMatrix.txt
deleted file mode 100644
index bf7272113e186f8ae4f6a6fdd49e94b624861519..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.29011587124539995
-1 2 -1.8401643988405223
-1 3 -1.18820375265033187e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/QMatrix.txt
deleted file mode 100644
index 0246e2c0bab9d2aa41aed8f41f995caf0b358682..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 339.803415812414471
-1 2 28.2115964246570137
-1 3 -5.16478678401488533e-15
-2 1 28.2115964246582394
-2 2 360.569431146881982
-2 3 2.10432799657711556e-15
-3 1 -6.18862600054725931e-16
-3 2 1.20248862950367297e-15
-3 3 185.664934323018571
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/perforated_wood_upper_log.txt
deleted file mode 100644
index 1d35c9643034926672b026cf5b7f899c34789182..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/2/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.161941 4.4991e-18 0
-4.4991e-18 0.0128443 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0150536 -1.26978e-18 0
--1.26978e-18 0.195606 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--5.51053e-19 0.0295837 0
-0.0295837 -2.95435e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-339.803 28.2116 -5.16479e-15
-28.2116 360.569 2.10433e-15
--6.18863e-16 1.20249e-15 185.665
-
-------------------------
---- Prestrain Output ---
-Bhat_: 726.275 -598.899 -2.56908e-14
-Beff_: 2.29012 -1.84016 -1.1882e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=339.803
-q2=360.569
-q3=185.665
-q12=28.2116
-q13=-5.16479e-15
-q23=2.10433e-15
-q_onetwo=28.211596
-b1=2.290116
-b2=-1.840164
-b3=-0.000000
-mu_gamma=185.664934
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.39803e+02 & 3.60569e+02 & 1.85665e+02 & 2.82116e+01 & -5.16479e-15 & 2.10433e-15 & 2.29012e+00 & -1.84016e+00 & -1.18820e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/BMatrix.txt
deleted file mode 100644
index 555cb38ed87d967fc14a60624ae0a857a40ad62b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.3448199646108252
-1 2 -1.7665448201501821
-1 3 3.0247750366783579e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/QMatrix.txt
deleted file mode 100644
index 0851292487e9a731c67341cd1b732c20d30554c1..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 320.217438744446383
-1 2 26.0781487507539786
-1 3 9.4629165614534827e-16
-2 1 26.0781487507546998
-2 2 340.992179310037841
-2 3 2.63677968348474678e-15
-3 1 2.86966631013463314e-15
-3 2 6.82071586710630839e-16
-3 3 165.887254477211002
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/perforated_wood_upper_log.txt
deleted file mode 100644
index d79bb2155bedd0c29977883a51dd78eb22820ece..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/3/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.148307 -3.91889e-19 0
--3.91889e-19 0.0126372 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0141936 -1.88981e-18 0
--1.88981e-18 0.199947 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--7.53193e-19 0.0449477 0
-0.0449477 1.98722e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-320.217 26.0781 9.46292e-16
-26.0781 340.992 2.63678e-15
-2.86967e-15 6.82072e-16 165.887
-
-------------------------
---- Prestrain Output ---
-Bhat_: 704.784 -541.229 5.57011e-14
-Beff_: 2.34482 -1.76654 3.02478e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=320.217
-q2=340.992
-q3=165.887
-q12=26.0781
-q13=9.46292e-16
-q23=2.63678e-15
-q_onetwo=26.078149
-b1=2.344820
-b2=-1.766545
-b3=0.000000
-mu_gamma=165.887254
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.20217e+02 & 3.40992e+02 & 1.65887e+02 & 2.60781e+01 & 9.46292e-16 & 2.63678e-15 & 2.34482e+00 & -1.76654e+00 & 3.02478e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/BMatrix.txt
deleted file mode 100644
index 50c1a2898b87323595656810c87a64677d47ef23..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.40244279357842849
-1 2 -1.68421839310098331
-1 3 -4.12497472918141648e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/QMatrix.txt
deleted file mode 100644
index cd4b947072bdbe27b769541a753981f390fb74b4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 300.975714043243556
-1 2 23.6706831991565068
-1 3 -7.60619323601774422e-15
-2 1 23.6706831991571427
-2 2 321.705081650932982
-2 3 -4.24139889876329335e-16
-3 1 -1.87935604578637339e-15
-3 2 6.73289549113498254e-16
-3 3 143.901203683265294
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/perforated_wood_upper_log.txt
deleted file mode 100644
index dd26e7f03028c75b7ad4e109521b16655778a8f4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/4/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.134157 5.97128e-18 0
-5.97128e-18 0.0124762 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0130103 3.23521e-19 0
-3.23521e-19 0.204218 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--6.29971e-19 0.0620681 0
-0.0620681 -4.26503e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-300.976 23.6707 -7.60619e-15
-23.6707 321.705 -4.2414e-16
--1.87936e-15 6.7329e-16 143.901
-
-------------------------
---- Prestrain Output ---
-Bhat_: 683.21 -484.954 -6.50079e-14
-Beff_: 2.40244 -1.68422 -4.12497e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=300.976
-q2=321.705
-q3=143.901
-q12=23.6707
-q13=-7.60619e-15
-q23=-4.2414e-16
-q_onetwo=23.670683
-b1=2.402443
-b2=-1.684218
-b3=-0.000000
-mu_gamma=143.901204
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.00976e+02 & 3.21705e+02 & 1.43901e+02 & 2.36707e+01 & -7.60619e-15 & -4.24140e-16 & 2.40244e+00 & -1.68422e+00 & -4.12497e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/BMatrix.txt
deleted file mode 100644
index 49315929ffb0f1285aef019206f76b44532ea1ac..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.45121389338952334
-1 2 -1.61528346762097952
-1 3 -9.88204600694902147e-17
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/QMatrix.txt
deleted file mode 100644
index 5bd5b338917e27ff4d84e2a1a4eb4f454b1c107f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 285.741904809618518
-1 2 21.6885814533246162
-1 3 8.69866245006845062e-15
-2 1 21.6885814533249679
-2 2 307.331680445533266
-2 3 3.56550726443582988e-15
-3 1 4.69687223142445376e-15
-3 2 3.95083271653717816e-16
-3 3 127.328917972637129
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/perforated_wood_upper_log.txt
deleted file mode 100644
index 9b884e122046d98e9eaae0f90e43509c954507fd..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/5/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.12242 -5.90961e-18 0
--5.90961e-18 0.0123474 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0118873 -2.33307e-18 0
--2.33307e-18 0.207407 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--4.80897e-18 0.0751002 0
-0.0751002 1.34901e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-285.742 21.6886 8.69866e-15
-21.6886 307.332 3.56551e-15
-4.69687e-15 3.95083e-16 127.329
-
-------------------------
---- Prestrain Output ---
-Bhat_: 665.381 -443.264 -1.70784e-15
-Beff_: 2.45121 -1.61528 -9.88205e-17 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=285.742
-q2=307.332
-q3=127.329
-q12=21.6886
-q13=8.69866e-15
-q23=3.56551e-15
-q_onetwo=21.688581
-b1=2.451214
-b2=-1.615283
-b3=-0.000000
-mu_gamma=127.328918
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.85742e+02 & 3.07332e+02 & 1.27329e+02 & 2.16886e+01 & 8.69866e-15 & 3.56551e-15 & 2.45121e+00 & -1.61528e+00 & -9.88205e-17 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/BMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/BMatrix.txt
deleted file mode 100644
index 178608f68e5fd5c4a67d8cbbc40dbc4b1bf33cd5..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.53436002218693135
-1 2 -1.51902586283187846
-1 3 -3.49427326769003352e-16
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/QMatrix.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/QMatrix.txt
deleted file mode 100644
index ec528163072730a8f8a05208d3996a971b25db58..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 261.043359656164114
-1 2 19.263569495098789
-1 3 1.29380013647040215e-14
-2 1 19.2635694950995493
-2 2 289.207872157255906
-2 3 1.15565109565229918e-14
-3 1 1.44054012425273714e-14
-3 2 3.89380368226444062e-15
-3 3 108.717343442563958
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/parameter.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/parameter.txt
deleted file mode 100644
index 912bdbaa5ad1102b3520cf79a0d2781a8b2bef3c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/perforated_wood_upper_log.txt b/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/perforated_wood_upper_log.txt
deleted file mode 100644
index dba0c00eda2479a6fc95bdffde53b21778d13908..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/perforated-bilayer/results_upper_5/6/perforated_wood_upper_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.102381 -9.27855e-18 0
--9.27855e-18 0.0119339 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0105774 -8.68316e-18 0
--8.68316e-18 0.211433 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.34791e-17 0.0896179 0
-0.0896179 -3.6337e-19 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-261.043 19.2636 1.2938e-14
-19.2636 289.208 1.15565e-14
-1.44054e-14 3.8938e-15 108.717
-
-------------------------
---- Prestrain Output ---
-Bhat_: 632.316 -390.493 -7.39513e-15
-Beff_: 2.53436 -1.51903 -3.49427e-16 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=261.043
-q2=289.208
-q3=108.717
-q12=19.2636
-q13=1.2938e-14
-q23=1.15565e-14
-q_onetwo=19.263569
-b1=2.534360
-b2=-1.519026
-b3=-0.000000
-mu_gamma=108.717343
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 2.61043e+02 & 2.89208e+02 & 1.08717e+02 & 1.92636e+01 & 1.29380e-14 & 1.15565e-14 & 2.53436e+00 & -1.51903e+00 & -3.49427e-16 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/runWoodSimulations.py b/experiment/micro-problem/compWood/runWoodSimulations.py
index 99fd093b823a9c5b1c3e54fdd436bff796482d9d..2cfe2d2cf70e88cc2d781b62ebd5bab428b12580 100644
--- a/experiment/micro-problem/compWood/runWoodSimulations.py
+++ b/experiment/micro-problem/compWood/runWoodSimulations.py
@@ -13,15 +13,22 @@ import codecs
import sys
import threading
# ------------------------------------------------------------------------------------------------------------------------------------------------------------------------
-def SetParameterMaterialFunction(inputFunction, parameterName, parameterValue):
- with open(inputFunction+'.py', 'r') as file:
+def SetParameterMaterialFunction(parameterFile, parameterName, parameterValue):
+ """"
+ Overwrite parameter 'parameterName' in the 'parameterFile'
+ with new value: 'parameterValue.
+ """
+ with open(parameterFile +'.py', 'r') as file:
filedata = file.read()
- filedata = re.sub('(?m)^'+str(parameterName)+'\s?=.*',str(parameterName)+' = '+str(parameterValue),filedata)
- f = open(inputFunction+'.py','w')
+ filedata = re.sub('(?m)'+str(parameterName)+'\s?=.*',str(parameterName)+' = '+str(parameterValue),filedata)
+ f = open(parameterFile +'.py','w')
f.write(filedata)
f.close()
+
+
+
# Read effective quantites
def ReadEffectiveQuantities(QFilePath = os.path.dirname(os.getcwd()) + '/outputs/QMatrix.txt', BFilePath = os.path.dirname(os.getcwd())+ '/outputs/BMatrix.txt'):
# Read Output Matrices (effective quantities)
@@ -186,13 +193,13 @@ materialFunctionParameter_2=[
### DATASET Experiment 3
materialFunctionParameter_3=[
[ # Dataset Ratio r = 0.12
-[0.12, 0.0047, 17.32986047, 9.005046347, np.pi/12.0, 4.312080261],
-[0.12, 0.0047, 17.32986047, 9.005046347, np.pi/6.0, 4.312080261],
-[0.12, 0.0047, 17.32986047, 9.005046347, np.pi/4.0, 4.312080261],
-[0.12, 0.0047, 17.32986047, 9.005046347, np.pi/3.0, 4.312080261],
-[0.12, 0.0047, 17.32986047, 9.005046347, 5.0*np.pi/12.0, 4.312080261],
-[0.12, 0.0047, 17.32986047, 9.005046347, np.pi/2.0, 4.312080261],
-[0.12, 0.0047, 17.32986047, 9.005046347, 7.0*np.pi/12.0, 4.312080261]
+# [0.12, 0.0047, 17.32986047, 9.005046347, np.pi/12.0, 4.312080261],
+# [0.12, 0.0047, 17.32986047, 9.005046347, np.pi/6.0, 4.312080261],
+[0.12, 0.0047, 17.32986047, 9.005046347, np.pi/4.0, 4.312080261]
+# [0.12, 0.0047, 17.32986047, 9.005046347, np.pi/3.0, 4.312080261],
+# [0.12, 0.0047, 17.32986047, 9.005046347, 5.0*np.pi/12.0, 4.312080261],
+# [0.12, 0.0047, 17.32986047, 9.005046347, np.pi/2.0, 4.312080261],
+# [0.12, 0.0047, 17.32986047, 9.005046347, 7.0*np.pi/12.0, 4.312080261]
]
]
# ------------------------------------------------------------------------------------------------------------------------------------------------------------------------
@@ -204,15 +211,21 @@ materialFunctionParameter_3=[
# 1. material, 2. material-parameters, 3. ExperimentPathExtension 4. Perforation 5. perforatedLayer 6. Dataset-numbers
-scenarios = [["wood_european_beech" , materialFunctionParameter_1 , "/wood-bilayer" , False , '' , [5]],
- # ["wood_european_beech" , materialFunctionParameter_1 , "/wood-bilayer" , False , '' , [0, 1, 2, 3, 4, 5]],
- ["perforated_wood_upper" , materialFunctionParameter_2 , "/perforated-bilayer" , True , 'upper' , [0, 1, 2, 3, 4, 5]],
- ["perforated_wood_lower" , materialFunctionParameter_2 , "/perforated-bilayer" , True , 'lower' , [0, 1, 2, 3, 4, 5]],
+# scenarios = [["wood_european_beech" , materialFunctionParameter_1 , "/wood-bilayer" , False , '' , [5]],
+# # ["wood_european_beech" , materialFunctionParameter_1 , "/wood-bilayer" , False , '' , [0, 1, 2, 3, 4, 5]],
+# ["perforated_wood_upper" , materialFunctionParameter_2 , "/perforated-bilayer" , True , 'upper' , [0, 1, 2, 3, 4, 5]],
+# ["perforated_wood_lower" , materialFunctionParameter_2 , "/perforated-bilayer" , True , 'lower' , [0, 1, 2, 3, 4, 5]],
+# ["wood_european_beech" , materialFunctionParameter_3 , "/wood-bilayer-rotatedLayer" , False , '' , [0]]
+# ]
+
+scenarios = [
+ ["wood_european_beech" , materialFunctionParameter_3 , "/wood-bilayer-rotatedLayer" , False , '' , [0]],
["wood_european_beech" , materialFunctionParameter_3 , "/wood-bilayer-rotatedLayer" , False , '' , [0]]
]
+
print('sys.argv[0]', sys.argv[0])
print('sys.argv[1]', sys.argv[1])
print('sys.argv[2]', sys.argv[2])
@@ -242,7 +255,7 @@ for slurm_array_task_id in scenarioNumbers:
if CONTAINER:
#--- Taurus version
# print('CONTAINER SETUP USED')
- pythonPath = "/dune/dune-microstructure/experiment/compWood" + pathExtension
+ pythonPath = "/dune/dune-microstructure/experiment/micro-problem/compWood" + pathExtension
# instrumentedPath = "/dune/dune-gfe/instrumented"
# resultPath = "/dune/dune-gfe/outputs"
resultBasePath = "results_" + scenarios[slurm_array_task_id][0]
@@ -255,12 +268,12 @@ for slurm_array_task_id in scenarioNumbers:
else :
#--- Local version
# print('LOCAL SETUP USED')
- pythonPath = "/home/klaus/Desktop/Dune_release/dune-microstructure/experiment/compWood" + pathExtension
+ pythonPath = "/home/klaus/Desktop/Dune_TestTest/dune-microstructure/experiment/micro-problem/compWood" + pathExtension
# instrumentedPath = '/home/klaus/Desktop/harmonicmapBenchmark/dune-gfe/instrumented'
# resultPath = '/home/klaus/Desktop/harmonicmapBenchmark/dune-gfe/outputs' + "_" + scenarios[slurm_array_task_id][0]
- resultBasePath = '/home/klaus/Desktop/Dune_release/dune-microstructure/experiment/compWood' + pathExtension
+ resultBasePath = '/home/klaus/Desktop/Dune_TestTest/dune-microstructure/experiment/micro-problem/compWood' + pathExtension
- executablePath = '/home/klaus/Desktop/Dune_release/dune-microstructure/build-cmake/src'
+ executablePath = '/home/klaus/Desktop/Dune_TestTest/dune-microstructure/build-cmake/src'
try:
os.mkdir(resultBasePath)
@@ -269,7 +282,8 @@ for slurm_array_task_id in scenarioNumbers:
print(error)
- executable = executablePath + '/Cell-Problem'
+ # executable = executablePath + '/Cell-Problem'
+ executable = executablePath + '/micro-problem'
gamma = 1.0
@@ -318,6 +332,7 @@ for slurm_array_task_id in scenarioNumbers:
SetParameterMaterialFunction(pythonPath + "/" + pythonModule, "param_omega_flat",materialFunctionParameter[dataset_number][i][2])
SetParameterMaterialFunction(pythonPath + "/" + pythonModule, "param_omega_target",materialFunctionParameter[dataset_number][i][3])
SetParameterMaterialFunction(pythonPath + "/" + pythonModule, "param_theta",materialFunctionParameter[dataset_number][i][4])
+
if perforation:
SetParameterMaterialFunction(pythonPath + "/" + pythonModule, "param_beta",materialFunctionParameter[dataset_number][i][5])
diff --git a/experiment/micro-problem/compWood/wood-bilayer-rotatedLayer/wood_european_beech.py b/experiment/micro-problem/compWood/wood-bilayer-rotatedLayer/wood_european_beech.py
index 2c039df3abb94109b8d79f03b9bedef185377270..c980b745e1ff2e18827512bfccfc755c9d683471 100644
--- a/experiment/micro-problem/compWood/wood-bilayer-rotatedLayer/wood_european_beech.py
+++ b/experiment/micro-problem/compWood/wood-bilayer-rotatedLayer/wood_european_beech.py
@@ -25,169 +25,169 @@ parameterSet.baseName= 'wood_european_beech' #(needed for Output-Filename)
#---------------------------------------------------------------
# Wooden bilayer, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191116/#pone.0205607.ref015
-#--- define indicator function
-# x[0] : y1-component -1/2 to 1/2
-# x[1] : y2-component -1/2 to 1/2
-# x[2] : x3-component range -1/2 to 1/2
-#--- define indicator function
-def indicatorFunction(x):
- factor=1
- if (x[2]>=(0.5-param_r)):
- return 1 #Phase1
- else :
- return 2 #Phase2
-
-# --- Number of material phases
-parameterSet.Phases=2
-
-# Parameters of the model
-# -- (thickness upper layer) / (thickness)
-param_r = 0.12
-# -- thickness [meter]
-param_h = 0.0047
-# -- moisture content in the flat state [%]
-param_omega_flat = 17.32986047
-# -- moisture content in the target state [%]
-param_omega_target = 9.005046347
-# -- Drehwinkel
-param_theta = 1.832595714594046
-
-#
-#
-#
-# -- increment of the moisture content
-delta_omega=param_omega_target-param_omega_flat
-# moisture content for material law
-omega=param_omega_target
-
-# --- Material properties from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191116/#pone.0205607.ref015
-# --- for European beech, moisture content omega = 15%
-# --- L=direction orthogonal to layering and fibres = orthogonal to wood stem cross-section
-# --- T=tangential zu layering
-# --- R=orthogonal zu layering
-# --- in MPa
-# --- Properties are defined by affine function in dependence of moisture content omega via property = b_0+b_1 \omega
-# --- coefficients of affine function are contained in the following array
-# --- data taken from http://dx.doi.org/10.1016/j.cma.2014.10.031
-
-properties_coefficients=np.array([
- # [b_0, b_1]
- [2565.6,-59.7], # E_R [MPa]
- [885.4, -23.4], # E_T [MPa]
- [17136.7,-282.4], # E_L [MPa]
- [667.8, -15.19], # G_RT [MPa]
- [1482, -15.26], # G_RL [MPa]
- [1100, -17.72], # G_TL [MPa]
- [0.2933, -0.001012], # nu_TR [1]
- [0.383, -0.008722], # nu_LR [1]
- [0.3368, -0.009071] # nu_LT [1]
- ])
-# Compute actual material properties
-E_R = properties_coefficients[0,0]+properties_coefficients[0,1]*omega
-E_T = properties_coefficients[1,0]+properties_coefficients[1,1]*omega
-E_L = properties_coefficients[2,0]+properties_coefficients[2,1]*omega
-G_RT = properties_coefficients[3,0]+properties_coefficients[3,1]*omega
-G_LR = properties_coefficients[4,0]+properties_coefficients[4,1]*omega
-G_LT = properties_coefficients[5,0]+properties_coefficients[5,1]*omega
-nu_TR = properties_coefficients[6,0]+properties_coefficients[6,1]*omega
-nu_LR = properties_coefficients[7,0]+properties_coefficients[7,1]*omega
-nu_LT = properties_coefficients[8,0]+properties_coefficients[8,1]*omega
-# Compute the remaining Poisson ratios
-nu_TL=nu_LT*E_T/E_L
-nu_RT=nu_TR*E_R/E_T
-nu_RL=nu_LR*E_R/E_L
-#
-# --- differential swelling strain
-# --- relation to swelling strain eps: eps=alpha* delta_omega with delta_omega = change of water content in %
-alpha_L=0.00011 # PLOS paper
-alpha_R=0.00191 # PLOS paper
-alpha_T=0.00462 # PLOS paper
-# Umrechnen
-#alpha_L=(1-1/(1+delta_omega*alpha_L))/delta_omega
-#alpha_R=(1-1/(1+delta_omega*alpha_R))/delta_omega
-#alpha_T=(1-1/(1+delta_omega*alpha_T))/delta_omega
-# --- define geometry
-
-
-
-# # --- PHASE 1
-# # y_1-direction: L
-# # y_2-direction: T
-# # x_3-direction: R
-# # phase1_type="orthotropic"
-# # materialParameters_phase1 = [E_L,E_T,E_R,G_TL,G_RT,G_RL,nu_LT,nu_LR,nu_TR]
-# parameterSet.phase1_type="general_anisotropic"
-# [E_1,E_2,E_3]=[E_L,E_T,E_R]
-# [nu_12,nu_13,nu_23]=[nu_LT,nu_LR,nu_TR]
-# [nu_21,nu_31,nu_32]=[nu_TL,nu_RL,nu_RT]
-# [G_12,G_31,G_23]=[G_LT,G_LR,G_RT]
-# compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
-# [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
-# [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
-# [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
-# [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
-# [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
-# materialParameters_phase1 = compliance_S
-
-# def prestrain_phase1(x):
-# # hB=delta_omega * alpha with delta_omega increment of moisture content and alpha swelling factor.
-# return [[1/param_h*delta_omega*alpha_L, 0, 0], [0,1/param_h*delta_omega*alpha_T,0], [0,0,1/param_h*delta_omega*alpha_R]]
-
-
-#Nun mit R und T vertauscht:
-
-# y_1-direction: L
-# y_2-direction: R
-# x_3-direction: T
-# phase1_type="orthotropic"
-# materialParameters_phase1 = [E_L,E_T,E_R,G_TL,G_RT,G_RL,nu_LT,nu_LR,nu_TR]
-parameterSet.phase1_type="general_anisotropic"
-[E_1,E_2,E_3]=[E_L,E_R,E_T]
-[nu_12,nu_13,nu_23]=[nu_LR,nu_LT,nu_RT]
-[nu_21,nu_31,nu_32]=[nu_RL,nu_TL,nu_TR]
-[G_12,G_31,G_23]=[G_LR,G_LT,G_RT]
-compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
- [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
- [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
- [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
- [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
- [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
-materialParameters_phase1 = compliance_S
-
-def prestrain_phase1(x):
- # hB=delta_omega * alpha with delta_omega increment of moisture content and alpha swelling factor.
- return [[1/param_h*delta_omega*alpha_L, 0, 0], [0,1/param_h*delta_omega*alpha_R,0], [0,0,1/param_h*delta_omega*alpha_T]]
-
-
-
-# --- PHASE 2
-# y_1-direction: R
-# y_2-direction: L
-# x_3-direction: T
-parameterSet.phase2_type="general_anisotropic"
-[E_1,E_2,E_3]=[E_R,E_L,E_T]
-[nu_12,nu_13,nu_23]=[nu_RL,nu_RT,nu_LT]
-[nu_21,nu_31,nu_32]=[nu_LR,nu_TR,nu_TL]
-[G_12,G_31,G_23]=[G_LR,G_RT,G_LT]
-compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
- [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
- [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
- [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
- [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
- [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
-materialParameters_phase2 = compliance_S
-def prestrain_phase2(x):
- return [[1/param_h*delta_omega*alpha_R, 0, 0], [0,1/param_h*delta_omega*alpha_L,0], [0,0,1/param_h*delta_omega*alpha_T]]
-
-#Rotation um 2. Achse (= L)
-# parameterSet.phase2_axis = 1
-parameterSet.phase2_axis = 2
-# phase2_angle = param_theta
-# -- Drehwinkel
-parameterSet.phase2_angle = param_theta
-# parameterSet.phase2_angle = 4*np.pi/12
+class Microstructure:
+ def __init__(self):
+ # self.macroPoint = macroPoint
+ self.gamma = 1.0 #in the future this might change depending on macroPoint.
+ self.phases = 2 #in the future this might change depending on macroPoint.
+
+
+ # Parameters of the model
+ # -- (thickness upper layer) / (thickness)
+ self.param_r = 0.12
+ # -- thickness [meter]
+ self.param_h = 0.0047
+ # -- moisture content in the flat state [%]
+ self.param_omega_flat = 17.32986047
+ # -- moisture content in the target state [%]
+ self.param_omega_target = 9.005046347
+ # -- Drehwinkel
+ param_theta = 0.7853981633974483
+ # -- increment of the moisture content
+ self.delta_omega=self.param_omega_target-self.param_omega_flat
+ # moisture content for material law
+ self.omega=self.param_omega_target
+
+ # --- Material properties from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191116/#pone.0205607.ref015
+ # --- for European beech, moisture content omega = 15%
+ # --- L=direction orthogonal to layering and fibres = orthogonal to wood stem cross-section
+ # --- T=tangential zu layering
+ # --- R=orthogonal zu layering
+ # --- in MPa
+ # --- Properties are defined by affine function in dependence of moisture content omega via property = b_0+b_1 \omega
+ # --- coefficients of affine function are contained in the following array
+ # --- data taken from http://dx.doi.org/10.1016/j.cma.2014.10.031
+ self.properties_coefficients=np.array([
+ # [b_0, b_1]
+ [2565.6,-59.7], # E_R [MPa]
+ [885.4, -23.4], # E_T [MPa]
+ [17136.7,-282.4], # E_L [MPa]
+ [667.8, -15.19], # G_RT [MPa]
+ [1482, -15.26], # G_RL [MPa]
+ [1100, -17.72], # G_TL [MPa]
+ [0.2933, -0.001012], # nu_TR [1]
+ [0.383, -0.008722], # nu_LR [1]
+ [0.3368, -0.009071] # nu_LT [1]
+ ])
+
+ # Compute actual material properties
+ self.E_R = self.properties_coefficients[0,0]+self.properties_coefficients[0,1]*self.omega
+ self.E_T = self.properties_coefficients[1,0]+self.properties_coefficients[1,1]*self.omega
+ self.E_L = self.properties_coefficients[2,0]+self.properties_coefficients[2,1]*self.omega
+ self.G_RT = self.properties_coefficients[3,0]+self.properties_coefficients[3,1]*self.omega
+ self.G_LR = self.properties_coefficients[4,0]+self.properties_coefficients[4,1]*self.omega
+ self.G_LT = self.properties_coefficients[5,0]+self.properties_coefficients[5,1]*self.omega
+ self.nu_TR = self.properties_coefficients[6,0]+self.properties_coefficients[6,1]*self.omega
+ self.nu_LR = self.properties_coefficients[7,0]+self.properties_coefficients[7,1]*self.omega
+ self.nu_LT = self.properties_coefficients[8,0]+self.properties_coefficients[8,1]*self.omega
+ # Compute the remaining Poisson ratios
+ self.nu_TL=self.nu_LT*self.E_T/self.E_L
+ self.nu_RT=self.nu_TR*self.E_R/self.E_T
+ self.nu_RL=self.nu_LR*self.E_R/self.E_L
+ #
+ # --- differential swelling strain
+ # --- relation to swelling strain eps: eps=alpha* delta_omega with delta_omega = change of water content in %
+ self.alpha_L=0.00011 # PLOS paper
+ self.alpha_R=0.00191 # PLOS paper
+ self.alpha_T=0.00462 # PLOS paper
+ # Umrechnen
+ #alpha_L=(1-1/(1+delta_omega*alpha_L))/delta_omega
+ #alpha_R=(1-1/(1+delta_omega*alpha_R))/delta_omega
+ #alpha_T=(1-1/(1+delta_omega*alpha_T))/delta_omega
+
+
+
+ # # --- PHASE 1
+ # # y_1-direction: L
+ # # y_2-direction: T
+ # # x_3-direction: R
+ # # phase1_type="orthotropic"
+ # # materialParameters_phase1 = [E_L,E_T,E_R,G_TL,G_RT,G_RL,nu_LT,nu_LR,nu_TR]
+ # parameterSet.phase1_type="general_anisotropic"
+ # [E_1,E_2,E_3]=[E_L,E_T,E_R]
+ # [nu_12,nu_13,nu_23]=[nu_LT,nu_LR,nu_TR]
+ # [nu_21,nu_31,nu_32]=[nu_TL,nu_RL,nu_RT]
+ # [G_12,G_31,G_23]=[G_LT,G_LR,G_RT]
+ # compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
+ # [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
+ # [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
+ # [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
+ # [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
+ # [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
+ # materialParameters_phase1 = compliance_S
+
+ # def prestrain_phase1(x):
+ # # hB=delta_omega * alpha with delta_omega increment of moisture content and alpha swelling factor.
+ # return [[1/param_h*delta_omega*alpha_L, 0, 0], [0,1/param_h*delta_omega*alpha_T,0], [0,0,1/param_h*delta_omega*alpha_R]]
+
+
+ #Nun mit R und T vertauscht:
+
+ # y_1-direction: L
+ # y_2-direction: R
+ # x_3-direction: T
+ # phase1_type="orthotropic"
+ # materialParameters_phase1 = [E_L,E_T,E_R,G_TL,G_RT,G_RL,nu_LT,nu_LR,nu_TR]
+ self.phase1_type="general_anisotropic"
+ [E_1,E_2,E_3]=[self.E_L,self.E_R,self.E_T]
+ [nu_12,nu_13,nu_23]=[self.nu_LR,self.nu_LT,self.nu_RT]
+ [nu_21,nu_31,nu_32]=[self.nu_RL,self.nu_TL,self.nu_TR]
+ [G_12,G_31,G_23]=[self.G_LR,self.G_LT,self.G_RT]
+ compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
+ [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
+ [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
+ [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
+ [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
+ [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
+ self.materialParameters_phase1 = compliance_S
+
+ # --- PHASE 2
+ # y_1-direction: R
+ # y_2-direction: L
+ # x_3-direction: T
+ self.phase2_type="general_anisotropic"
+ [E_1,E_2,E_3]=[self.E_R,self.E_L,self.E_T]
+ [nu_12,nu_13,nu_23]=[self.nu_RL,self.nu_RT,self.nu_LT]
+ [nu_21,nu_31,nu_32]=[self.nu_LR,self.nu_TR,self.nu_TL]
+ [G_12,G_31,G_23]=[self.G_LR,self.G_RT,self.G_LT]
+ compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
+ [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
+ [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
+ [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
+ [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
+ [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
+ self.materialParameters_phase2 = compliance_S
+
+ #Rotation um 3. Achse (= T) note that axis starts from 0
+ # parameterSet.phase2_axis = 1
+ self.phase2_axis = 2
+ # phase2_angle = param_theta
+ # -- Drehwinkel
+ self.phase2_angle = param_theta
+ # parameterSet.phase2_angle = 4*np.pi/12
+
+
+ def prestrain_phase1(self,x):
+ # hB=delta_omega * alpha with delta_omega increment of moisture content and alpha swelling factor.
+ return [[1/self.param_h*self.delta_omega*self.alpha_L, 0, 0], [0,1/self.param_h*self.delta_omega*self.alpha_R,0], [0,0,1/self.param_h*self.delta_omega*self.alpha_T]]
+
+ def prestrain_phase2(self,x):
+ return [[1/self.param_h*self.delta_omega*self.alpha_R, 0, 0], [0,1/self.param_h*self.delta_omega*self.alpha_L,0], [0,0,1/self.param_h*self.delta_omega*self.alpha_T]]
+
+ #--- define indicator function
+ # x[0] : y1-component -1/2 to 1/2
+ # x[1] : y2-component -1/2 to 1/2
+ # x[2] : x3-component range -1/2 to 1/2
+ #--- define indicator function
+ def indicatorFunction(self,x):
+ factor=1
+ if (x[2]>=(0.5-self.param_r)):
+ return 1 #Phase1
+ else :
+ return 2 #Phase2
+
# # --- PHASE 3 = Phase 1 gedreht
# # y_1-direction: L
@@ -204,36 +204,33 @@ parameterSet.phase2_angle = param_theta
-# --- Choose scale ratio gamma:
-parameterSet.gamma=1.0
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+
#############################################
# Grid parameters
#############################################
-## numLevels : Number of Levels on which solution is computed. starting with a 2x2x2 cube mesh.
-## {start,finish} computes on all grid from 2^(start) to 2^finish refinement
-#----------------------------------------------------
-# parameterSet.numLevels= '3 3' # computes all levels from first to second entry
-parameterSet.numLevels= '4 4' # computes all levels from first to second entry
-
+parameterSet.microGridLevel = 4
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER (default), #4: UMFPACK - SOLVER
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
@@ -241,35 +238,16 @@ parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for sol
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
+parameterSet.MaterialSubsamplingRefinement= 2
# --- Write Correctos to VTK-File:
-parameterSet.write_VTK = 0
-
-# The grid can be refined several times for a higher resolution in the VTK-file.
-parameterSet.subsamplingRefinement = 0
+parameterSet.writeCorrectorsVTK = 0
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
-
-
-# The assembly uses a cache for element matrices this can be turned on/off
-# parameterSet.cacheElementMatrices = 1
-
-# --- (Optional output) L2Error, integral mean:
-#parameterSet.write_L2Error = 1
-#parameterSet.write_IntegralMean = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
-# --- Write corrector-coefficients to log-File:
-#parameterSet.write_corrector_phi1 = 1
-#parameterSet.write_corrector_phi2 = 1
-#parameterSet.write_corrector_phi3 = 1
-
-# --- Print Condition number of matrix (can be expensive):
-#parameterSet.print_conditionNumber= 1 #(default=false)
-
-# --- write effective quantities to Matlab-folder for symbolic minimization:
-parameterSet.write_toMATLAB = 1 # writes effective quantities to .txt-files QMatrix.txt and BMatrix.txt
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
\ No newline at end of file
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/0/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/0/BMatrix.txt
deleted file mode 100644
index 1d064c0444d7f52f7eb82a1300f5de9103d808f2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.30957793337868611
-1 2 -0.16799616054069974
-1 3 -3.49364675888413947e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/0/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/0/QMatrix.txt
deleted file mode 100644
index c5af3f6a33ca9875c9df9c79c0185ad2e74ac759..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 291.65125028076119
-1 2 31.5914277949655009
-1 3 -5.63265175255268547e-29
-2 1 31.5914277949653055
-2 2 783.465935671704187
-2 3 2.90083568223605464e-30
-3 1 -2.02055995549057814e-28
-3 2 -7.37074541371326025e-29
-3 3 209.608425967589852
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/0/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/0/parameter.txt
deleted file mode 100644
index bd45649a7a6806013717afa08fcd0b14ae88daad..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.32986047
-omega_target = 14.70179844
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/0/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/0/wood_european_beech_log.txt
deleted file mode 100644
index 99f7b04aed50a6f5f8b809662c422788b272d41a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/0/wood_european_beech_log.txt
+++ /dev/null
@@ -1 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/1/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/1/BMatrix.txt
deleted file mode 100644
index cad9d10bd080653dabf6065da16c86bc4d431be6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.84025869320214608
-1 2 -0.241409881003110893
-1 3 8.74700097788480588e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/1/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/1/QMatrix.txt
deleted file mode 100644
index 3ae1d7f010ee58a0ffa14d0b96dab839e176ee0c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 301.544403021167
-1 2 34.0854771606682121
-1 3 2.59461282107848414e-30
-2 1 34.0854771606677929
-2 2 803.183286976336035
-2 3 -1.74628882882451643e-30
-3 1 1.95447414833141715e-28
-3 2 4.5428166061398123e-29
-3 3 212.348100666669637
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/1/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/1/parameter.txt
deleted file mode 100644
index 3f5914283d52269acd40f7348784827fd093e61e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.32986047
-omega_target = 13.6246
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/1/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/1/wood_european_beech_log.txt
deleted file mode 100644
index 4cf884733e0df42685175a7881cba84c1355323b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/1/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.198639 5.89621e-31 0
-5.89621e-31 0.00776103 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00776103 -2.90924e-31 0
--2.90924e-31 0.0535593 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.39735e-31 1.27546e-17 0
-1.27546e-17 1.38333e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-301.544 34.0855 2.59461e-30
-34.0855 803.183 -1.74629e-30
-1.95447e-28 4.54282e-29 212.348
-
-------------------------
---- Prestrain Output ---
-Bhat_: 546.691 -131.17 2.20612e-27
-Beff_: 1.84026 -0.24141 8.747e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=301.544
-q2=803.183
-q3=212.348
-q12=34.0855
-q13=2.59461e-30
-q23=-1.74629e-30
-q_onetwo=34.085477
-b1=1.840259
-b2=-0.241410
-b3=0.000000
-mu_gamma=212.348101
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.01544e+02 & 8.03183e+02 & 2.12348e+02 & 3.40855e+01 & 2.59461e-30 & -1.74629e-30 & 1.84026e+00 & -2.41410e-01 & 8.74700e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/2/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/2/BMatrix.txt
deleted file mode 100644
index 9dcf95339cd4cafbf49af7ed31be99b5012d77e2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.42497835969141029
-1 2 -0.325737200491554135
-1 3 1.4268463918470752e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/2/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/2/QMatrix.txt
deleted file mode 100644
index 521bd8cd90125114b2c3a4a3a2f70f6e6a424acb..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 312.519242246794022
-1 2 36.9667738045496321
-1 3 9.85074647955183394e-30
-2 1 36.9667738045513019
-2 2 825.119122698170941
-2 3 1.86832537975061363e-29
-3 1 2.29567371412312849e-28
-3 2 5.57429379889294185e-29
-3 3 215.386506346531121
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/2/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/2/parameter.txt
deleted file mode 100644
index b2961f62035e900f0367c01d0b8bc85c54fa966e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.32986047
-omega_target = 12.42994508
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/2/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/2/wood_european_beech_log.txt
deleted file mode 100644
index ec9bc460e3b9f03997cdb2df866f09537a4db5f1..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/2/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.196895 3.87756e-30 0
-3.87756e-30 0.00811353 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00811353 7.30271e-31 0
-7.30271e-31 0.0534549 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.68676e-31 5.46724e-18 0
-5.46724e-18 1.70292e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-312.519 36.9668 9.85075e-30
-36.9668 825.119 1.86833e-29
-2.29567e-28 5.57429e-29 215.387
-
-------------------------
---- Prestrain Output ---
-Bhat_: 745.811 -179.128 3.61177e-27
-Beff_: 2.42498 -0.325737 1.42685e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=312.519
-q2=825.119
-q3=215.387
-q12=36.9668
-q13=9.85075e-30
-q23=1.86833e-29
-q_onetwo=36.966774
-b1=2.424978
-b2=-0.325737
-b3=0.000000
-mu_gamma=215.386506
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.12519e+02 & 8.25119e+02 & 2.15387e+02 & 3.69668e+01 & 9.85075e-30 & 1.86833e-29 & 2.42498e+00 & -3.25737e-01 & 1.42685e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/3/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/3/BMatrix.txt
deleted file mode 100644
index cd96ffc0d92e915ec8499455c65b7511614bfa4d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.78145732352313413
-1 2 -0.378880335298565851
-1 3 4.10783387181023803e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/3/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/3/QMatrix.txt
deleted file mode 100644
index 87467ee032ec1860fc5960c7d00239e733f6a093..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 319.248761807926712
-1 2 38.7929603649761248
-1 3 -1.94726924817104643e-29
-2 1 38.7929603649761248
-2 2 838.600683836862345
-2 3 -1.91100398731823478e-30
-3 1 4.51418520301082312e-28
-3 2 6.33065043420398845e-29
-3 3 217.248762862696651
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/3/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/3/parameter.txt
deleted file mode 100644
index c994c4c8a64b05115e74b088be6f4090c312fa2c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.32986047
-omega_target = 11.69773413
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/3/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/3/wood_european_beech_log.txt
deleted file mode 100644
index 84ccce1188b2f1719bd1940c7435f12ce40246ad..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/3/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.195885 0 0
-0 0.00832989 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00832989 0 0
-0 0.053395 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-3.94138e-31 -1.95736e-18 0
--1.95736e-18 4.47411e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-319.249 38.793 -1.94727e-29
-38.793 838.601 -1.911e-30
-4.51419e-28 6.33065e-29 217.249
-
-------------------------
---- Prestrain Output ---
-Bhat_: 873.279 -209.828 1.01558e-26
-Beff_: 2.78146 -0.37888 4.10783e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=319.249
-q2=838.601
-q3=217.249
-q12=38.793
-q13=-1.94727e-29
-q23=-1.911e-30
-q_onetwo=38.792960
-b1=2.781457
-b2=-0.378880
-b3=0.000000
-mu_gamma=217.248763
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.19249e+02 & 8.38601e+02 & 2.17249e+02 & 3.87930e+01 & -1.94727e-29 & -1.91100e-30 & 2.78146e+00 & -3.78880e-01 & 4.10783e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/4/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/4/BMatrix.txt
deleted file mode 100644
index 4507389cbfbe6c35f7899a726a6b450d9a0920a0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.05128342151052845
-1 2 -0.419963670790280019
-1 3 -6.7274670078047127e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/4/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/4/QMatrix.txt
deleted file mode 100644
index 5e78d05f7696a4476977c6fca6b886508514fcc7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 324.362101137586365
-1 2 40.2107071602111006
-1 3 1.44978228423637953e-29
-2 1 40.2107071602082726
-2 2 848.859633290990359
-2 3 -4.10049744459486385e-30
-3 1 -6.51075415763388712e-28
-3 2 -9.66795967527863043e-29
-3 3 218.663197663963047
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/4/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/4/parameter.txt
deleted file mode 100644
index 8b5b4696dc1893163238150d0242c8f44c80dcf2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.32986047
-omega_target = 11.14159987
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/4/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/4/wood_european_beech_log.txt
deleted file mode 100644
index abbd2b7ae6a3221ec01b761cf14ff43701dc3e26..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/4/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.195147 0 0
-0 0.00849438 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00849438 0 0
-0 0.0533516 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--5.8642e-31 -5.62466e-18 0
--5.62466e-18 -6.55118e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-324.362 40.2107 1.44978e-29
-40.2107 848.86 -4.1005e-30
--6.51075e-28 -9.66796e-29 218.663
-
-------------------------
---- Prestrain Output ---
-Bhat_: 972.834 -233.796 -1.66565e-26
-Beff_: 3.05128 -0.419964 -6.72747e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=324.362
-q2=848.86
-q3=218.663
-q12=40.2107
-q13=1.44978e-29
-q23=-4.1005e-30
-q_onetwo=40.210707
-b1=3.051283
-b2=-0.419964
-b3=-0.000000
-mu_gamma=218.663198
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.24362e+02 & 8.48860e+02 & 2.18663e+02 & 4.02107e+01 & 1.44978e-29 & -4.10050e-30 & 3.05128e+00 & -4.19964e-01 & -6.72747e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/5/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/5/BMatrix.txt
deleted file mode 100644
index a9f764bfc92f2b939450c022f98313e98d0677f9..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.84294705196740471
-1 2 -0.544690224125797706
-1 3 2.61477368966447197e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/5/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/5/QMatrix.txt
deleted file mode 100644
index 09a7dc9867dfcfc37c8cdb2d15732ac768cf706c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 339.46321808419026
-1 2 44.5491962625941937
-1 3 2.20634534429001739e-30
-2 1 44.5491962625928366
-2 2 879.230358021768325
-2 3 -8.91455193358519859e-30
-3 1 2.9028399508855626e-28
-3 2 8.47924719082015293e-29
-3 3 222.836628592952195
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/5/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/5/parameter.txt
deleted file mode 100644
index a14b4fa7d671b0f483d3d229ad7d92fa8f488141..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.32986047
-omega_target = 9.500670278
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/5/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/5/wood_european_beech_log.txt
deleted file mode 100644
index f2ffc0033fe36e7972dacd86e69544a8039d36e5..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/5/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.193101 -1.48756e-30 0
--1.48756e-30 0.00898057 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00898057 -2.04379e-31 0
--2.04379e-31 0.053233 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.86632e-31 -4.31564e-18 0
--4.31564e-18 2.11692e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-339.463 44.5492 2.20635e-30
-44.5492 879.23 -8.91455e-30
-2.90284e-28 8.47925e-29 222.837
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1280.27 -307.708 6.89603e-27
-Beff_: 3.84295 -0.54469 2.61477e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=339.463
-q2=879.23
-q3=222.837
-q12=44.5492
-q13=2.20635e-30
-q23=-8.91455e-30
-q_onetwo=44.549196
-b1=3.842947
-b2=-0.544690
-b3=0.000000
-mu_gamma=222.836629
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.39463e+02 & 8.79230e+02 & 2.22837e+02 & 4.45492e+01 & 2.20635e-30 & -8.91455e-30 & 3.84295e+00 & -5.44690e-01 & 2.61477e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/6/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/6/BMatrix.txt
deleted file mode 100644
index 7c61f6e1f77e064db13e9f5a8a8cf9c5a679891b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.08079095797733249
-1 2 -0.583363076166479533
-1 3 2.85775978363957378e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/6/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/6/QMatrix.txt
deleted file mode 100644
index 582af45ebbf97a6dd09cd0bb32f3b7bb1c2c5a32..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 344.029188416625061
-1 2 45.9054122338217852
-1 3 9.47865681429621997e-30
-2 1 45.90541223382656
-2 2 888.433975916668828
-2 3 -3.61535569160371914e-30
-3 1 6.40920762052510879e-29
-3 2 -5.71160128097841747e-29
-3 3 224.097165457464655
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/6/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/6/parameter.txt
deleted file mode 100644
index e6e12711388c45f982819a5a91d18faea6c2bd00..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.12
-h = 0.0047
-omega_flat = 17.32986047
-omega_target = 9.005046347
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_0/6/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_0/6/wood_european_beech_log.txt
deleted file mode 100644
index 8d0d6af46a3c45077965ffd613e028d77551768f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_0/6/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.192519 7.20329e-32 0
-7.20329e-32 0.00912767 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00912767 -2.33924e-31 0
--2.33924e-31 0.0532 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.59148e-31 -1.86835e-18 0
--1.86835e-18 2.18407e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-344.029 45.9054 9.47866e-30
-45.9054 888.434 -3.61536e-30
-6.40921e-29 -5.7116e-29 224.097
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1377.13 -330.949 6.69902e-27
-Beff_: 4.08079 -0.583363 2.85776e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=344.029
-q2=888.434
-q3=224.097
-q12=45.9054
-q13=9.47866e-30
-q23=-3.61536e-30
-q_onetwo=45.905412
-b1=4.080791
-b2=-0.583363
-b3=0.000000
-mu_gamma=224.097165
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.44029e+02 & 8.88434e+02 & 2.24097e+02 & 4.59054e+01 & 9.47866e-30 & -3.61536e-30 & 4.08079e+00 & -5.83363e-01 & 2.85776e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/0/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/0/BMatrix.txt
deleted file mode 100644
index 1dce0991991bc1b209d09f2ade87f24beb506210..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.29752030545534569
-1 2 -0.22064583149339706
-1 3 5.77592973758246185e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/0/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/0/QMatrix.txt
deleted file mode 100644
index 2b21a4a46691222c38848728db0289f1e7705641..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 301.469198503229222
-1 2 29.1190124599649494
-1 3 3.94430452610505903e-31
-2 1 29.1190124599661502
-2 2 693.959113110051476
-2 3 -3.40966637354316235e-30
-3 1 9.93104511931752164e-29
-3 2 -1.89403173673628836e-29
-3 3 209.474297561760352
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/0/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/0/parameter.txt
deleted file mode 100644
index 8c7e42ed8815ae515c983da42c5a95ba9aae5ffa..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.28772791
-omega_target = 14.75453569
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/0/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/0/wood_european_beech_log.txt
deleted file mode 100644
index e4ba84954859345b00663e98cc9e60e521bcdf72..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/0/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.222151 1.45463e-32 0
-1.45463e-32 0.0086233 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00836305 -9.45314e-33 0
--9.45314e-33 0.0723745 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.04806e-31 1.34292e-18 0
-1.34292e-18 1.59846e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-301.469 29.119 3.9443e-31
-29.119 693.959 -3.40967e-30
-9.93105e-29 -1.89403e-29 209.474
-
-------------------------
---- Prestrain Output ---
-Bhat_: 384.737 -115.337 1.34295e-27
-Beff_: 1.29752 -0.220646 5.77593e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=301.469
-q2=693.959
-q3=209.474
-q12=29.119
-q13=3.9443e-31
-q23=-3.40967e-30
-q_onetwo=29.119012
-b1=1.297520
-b2=-0.220646
-b3=0.000000
-mu_gamma=209.474298
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.01469e+02 & 6.93959e+02 & 2.09474e+02 & 2.91190e+01 & 3.94430e-31 & -3.40967e-30 & 1.29752e+00 & -2.20646e-01 & 5.77593e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/1/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/1/BMatrix.txt
deleted file mode 100644
index 51e95b75a2f354c67a4c369b1adadee77bd5d0b8..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.82704644820739048
-1 2 -0.316520389633071719
-1 3 -2.32578838926937533e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/1/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/1/QMatrix.txt
deleted file mode 100644
index b864a516c5b04575d8728aec77709151173cc245..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 311.495612033295629
-1 2 31.3746169055476329
-1 3 2.19894977330357041e-29
-2 1 31.3746169055493915
-2 2 711.180546897385966
-2 3 -4.8023063163295726e-30
-3 1 -1.17190056554606093e-27
-3 2 -4.54434240643236942e-28
-3 3 212.125110381436087
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/1/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/1/parameter.txt
deleted file mode 100644
index 74be9cd75e7de037ac66ef17537213f8ff37a123..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.28772791
-omega_target = 13.71227639
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/1/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/1/wood_european_beech_log.txt
deleted file mode 100644
index 3180a0700f614c0367c79c835eb6174be3162aac..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/1/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.220595 0 0
-0 0.00898797 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00874334 0 0
-0 0.0722346 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--4.37856e-31 1.41866e-18 0
-1.41866e-18 -3.84461e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-311.496 31.3746 2.19895e-29
-31.3746 711.181 -4.80231e-30
--1.1719e-27 -4.54434e-28 212.125
-
-------------------------
---- Prestrain Output ---
-Bhat_: 559.186 -167.78 -6.93086e-27
-Beff_: 1.82705 -0.31652 -2.32579e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=311.496
-q2=711.181
-q3=212.125
-q12=31.3746
-q13=2.19895e-29
-q23=-4.80231e-30
-q_onetwo=31.374617
-b1=1.827046
-b2=-0.316520
-b3=-0.000000
-mu_gamma=212.125110
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.11496e+02 & 7.11181e+02 & 2.12125e+02 & 3.13746e+01 & 2.19895e-29 & -4.80231e-30 & 1.82705e+00 & -3.16520e-01 & -2.32579e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/2/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/2/BMatrix.txt
deleted file mode 100644
index b0489cf2465cfc77f8b3755756cee2f73226333b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.41486954141673316
-1 2 -0.426713983496025018
-1 3 9.97876487122218751e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/2/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/2/QMatrix.txt
deleted file mode 100644
index 458046f1ed124ba015a14e4c7a085c7ade8042f5..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 322.679479524483497
-1 2 33.9938655476088911
-1 3 1.25840262566261991e-29
-2 1 33.9938655476077045
-2 2 730.444621428729647
-2 3 -2.13547112233656711e-30
-3 1 2.16107010167487616e-28
-3 2 5.65973073341019462e-29
-3 3 215.081802194802265
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/2/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/2/parameter.txt
deleted file mode 100644
index c2cb9086be0c779e97a6cb3461eab04da1fa2f83..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.28772791
-omega_target = 12.54975012
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/2/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/2/wood_european_beech_log.txt
deleted file mode 100644
index a5b0e74e3227e777a48c0e2deb4d33d59f8ceaa6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/2/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.218967 1.70747e-30 0
-1.70747e-30 0.00939555 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00916787 -3.68532e-31 0
--3.68532e-31 0.0720895 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.13233e-31 -1.18625e-18 0
--1.18625e-18 1.41587e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-322.679 33.9939 1.2584e-29
-33.9939 730.445 -2.13547e-30
-2.16107e-28 5.65973e-29 215.082
-
-------------------------
---- Prestrain Output ---
-Bhat_: 764.723 -229.6 2.64397e-27
-Beff_: 2.41487 -0.426714 9.97876e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=322.679
-q2=730.445
-q3=215.082
-q12=33.9939
-q13=1.2584e-29
-q23=-2.13547e-30
-q_onetwo=33.993866
-b1=2.414870
-b2=-0.426714
-b3=0.000000
-mu_gamma=215.081802
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.22679e+02 & 7.30445e+02 & 2.15082e+02 & 3.39939e+01 & 1.25840e-29 & -2.13547e-30 & 2.41487e+00 & -4.26714e-01 & 9.97876e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/3/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/3/BMatrix.txt
deleted file mode 100644
index d397753607f8bbf758aebc5d4af52c4deee8d16f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.77508060298853554
-1 2 -0.496140746694544832
-1 3 -3.51719672988597282e-46
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/3/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/3/QMatrix.txt
deleted file mode 100644
index 3d2247077c0c39a89e739b9d1443b250f137a377..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 329.561454885542219
-1 2 35.6596265578670426
-1 3 -1.96121298096841001e-29
-2 1 35.6596265578661544
-2 2 742.326125001064497
-2 3 -4.73162468737056104e-30
-3 1 -6.81258281384692346e-45
-3 2 -1.7954103463951185e-45
-3 3 216.900770109434205
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/3/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/3/parameter.txt
deleted file mode 100644
index 69db3b5cb3f1ed9c971972d61284aa10d683f23f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.28772791
-omega_target = 11.83455959
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/3/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/3/wood_european_beech_log.txt
deleted file mode 100644
index dec30376a0cfa5b7cf09a0de40ffdebfce47b6e0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/3/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.218018 2.33857e-31 0
-2.33857e-31 0.00964673 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00942924 4.16336e-32 0
-4.16336e-32 0.0720056 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--3.43304e-48 6.06246e-18 0
-6.06246e-18 -4.52175e-49 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-329.561 35.6596 -1.96121e-29
-35.6596 742.326 -4.73162e-30
--6.81258e-45 -1.79541e-45 216.901
-
-------------------------
---- Prestrain Output ---
-Bhat_: 896.867 -269.34 -9.4303e-44
-Beff_: 2.77508 -0.496141 -3.5172e-46 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=329.561
-q2=742.326
-q3=216.901
-q12=35.6596
-q13=-1.96121e-29
-q23=-4.73162e-30
-q_onetwo=35.659627
-b1=2.775081
-b2=-0.496141
-b3=-0.000000
-mu_gamma=216.900770
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.29561e+02 & 7.42326e+02 & 2.16901e+02 & 3.56596e+01 & -1.96121e-29 & -4.73162e-30 & 2.77508e+00 & -4.96141e-01 & -3.51720e-46 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/4/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/4/BMatrix.txt
deleted file mode 100644
index 2c89878b6f6ae5a9abbe21d6f212a7dbb4e93cf6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.04819746864895968
-1 2 -0.549722239723354544
-1 3 -1.5661476142943759e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/4/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/4/QMatrix.txt
deleted file mode 100644
index 082860093fd48be595b0bcecafdc4205173e1deb..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 334.794275071445611
-1 2 36.9537023835250196
-1 3 4.07249442320347345e-29
-2 1 36.9537023835256875
-2 2 751.373908322565285
-2 3 7.30312634911639835e-31
-3 1 -1.65894852274599059e-28
-3 2 -6.88883408567756262e-30
-3 3 218.283489849225845
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/4/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/4/parameter.txt
deleted file mode 100644
index 7bf61ea17f062559dcabef0a25f53d6f43ba8142..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.28772791
-omega_target = 11.29089521
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/4/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/4/wood_european_beech_log.txt
deleted file mode 100644
index d53ae938bee11b6c018d0479e9adf5244d292469..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/4/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.217322 0 0
-0 0.0098379 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00962801 0 0
-0 0.0719445 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.20419e-31 5.21486e-18 0
-5.21486e-18 -1.93821e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-334.794 36.9537 4.07249e-29
-36.9537 751.374 7.30313e-31
--1.65895e-28 -6.88883e-30 218.283
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1000.2 -300.405 -3.92053e-27
-Beff_: 3.0482 -0.549722 -1.56615e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=334.794
-q2=751.374
-q3=218.283
-q12=36.9537
-q13=4.07249e-29
-q23=7.30313e-31
-q_onetwo=36.953702
-b1=3.048197
-b2=-0.549722
-b3=-0.000000
-mu_gamma=218.283490
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.34794e+02 & 7.51374e+02 & 2.18283e+02 & 3.69537e+01 & 4.07249e-29 & 7.30313e-31 & 3.04820e+00 & -5.49722e-01 & -1.56615e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/5/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/5/BMatrix.txt
deleted file mode 100644
index fff538b84525108bf3913a54017cf453fa89f2e0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.88360589206635165
-1 2 -0.718524153096883778
-1 3 -3.64042134077714142e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/5/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/5/QMatrix.txt
deleted file mode 100644
index c369f7357b6fb73b0c7b63733427cc17d5aec854..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 350.881684034111856
-1 2 41.08045251248992
-1 3 6.36943551207746641e-30
-2 1 41.0804525124909432
-2 2 779.259994526643936
-2 3 -2.07846359598270493e-30
-3 1 -3.98049900527083252e-28
-3 2 -8.21904929898942036e-29
-3 3 222.531584654428428
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/5/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/5/parameter.txt
deleted file mode 100644
index f54d4a21ac1dc4db1133101807e54df44f71b2eb..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.28772791
-omega_target = 9.620608917
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/5/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/5/wood_european_beech_log.txt
deleted file mode 100644
index 7037f895e2e1e81caba0ecb39d63ebdf2d6797c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/5/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.215312 0 0
-0 0.0104264 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0102393 0 0
-0 0.0717706 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--2.30192e-31 -7.20259e-18 0
--7.20259e-18 -3.46946e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-350.882 41.0805 6.36944e-30
-41.0805 779.26 -2.07846e-30
--3.9805e-28 -8.21905e-29 222.532
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1333.17 -400.377 -9.5879e-27
-Beff_: 3.88361 -0.718524 -3.64042e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=350.882
-q2=779.26
-q3=222.532
-q12=41.0805
-q13=6.36944e-30
-q23=-2.07846e-30
-q_onetwo=41.080453
-b1=3.883606
-b2=-0.718524
-b3=-0.000000
-mu_gamma=222.531585
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.50882e+02 & 7.79260e+02 & 2.22532e+02 & 4.10805e+01 & 6.36944e-30 & -2.07846e-30 & 3.88361e+00 & -7.18524e-01 & -3.64042e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/6/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/6/BMatrix.txt
deleted file mode 100644
index fa861cb33cf03fd8208fde7ece1f14b3f08f9556..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.14205856116698445
-1 2 -0.772209514335703617
-1 3 -2.24064806627448823e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/6/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/6/QMatrix.txt
deleted file mode 100644
index 46f45c98366cab20fdcf398eefe627f737a9c088..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 355.884063208915393
-1 2 42.4091720984219052
-1 3 1.16018019849887088e-29
-2 1 42.4091720984202141
-2 2 787.952048308325288
-2 3 -1.61134854727102475e-29
-3 1 -2.92480416439338895e-28
-3 2 -8.72219224656324881e-29
-3 3 223.851414869513405
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/6/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/6/parameter.txt
deleted file mode 100644
index ffb14c1a55fe9061a7a309f7af461af58cccba44..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.17
-h = 0.0049
-omega_flat = 17.28772791
-omega_target = 9.101671742
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_1/6/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_1/6/wood_european_beech_log.txt
deleted file mode 100644
index 2179fd47db4b7f8eb67b1c4b5a34eaa0b0de128f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_1/6/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.214725 0 0
-0 0.0106097 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0104293 0 0
-0 0.0717205 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.39357e-31 -2.338e-19 0
--2.338e-19 -2.01766e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-355.884 42.4092 1.16018e-29
-42.4092 787.952 -1.61135e-29
--2.9248e-28 -8.72219e-29 223.851
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1441.34 -432.803 -6.15984e-27
-Beff_: 4.14206 -0.77221 -2.24065e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=355.884
-q2=787.952
-q3=223.851
-q12=42.4092
-q13=1.16018e-29
-q23=-1.61135e-29
-q_onetwo=42.409172
-b1=4.142059
-b2=-0.772210
-b3=-0.000000
-mu_gamma=223.851415
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.55884e+02 & 7.87952e+02 & 2.23851e+02 & 4.24092e+01 & 1.16018e-29 & -1.61135e-29 & 4.14206e+00 & -7.72210e-01 & -2.24065e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/0/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/0/BMatrix.txt
deleted file mode 100644
index 61d6ab546848473f72ea90896e5693793d75f655..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.21307686572728635
-1 2 -0.295167273983245715
-1 3 9.93151852571420649e-31
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/0/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/0/QMatrix.txt
deleted file mode 100644
index 611f3f1716f7bfc37c3867bd045fa094862fb469..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 305.333970272295403
-1 2 26.280029011200611
-1 3 -3.74061817518666496e-29
-2 1 26.2800290111988346
-2 2 589.543718551700977
-2 3 -1.69867021094954202e-31
-3 1 2.8924560814186473e-29
-3 2 1.07299643213611696e-31
-3 3 209.544838005396343
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/0/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/0/parameter.txt
deleted file mode 100644
index ee7ee08fcca4bcbcac93d88a2edf8ee1497033da..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 14.72680026
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/0/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/0/wood_european_beech_log.txt
deleted file mode 100644
index 239685d24d33e5c150b4de5b2a9681ff78666547..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/0/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.234702 2.7313e-30 0
-2.7313e-30 0.00973024 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00954138 4.80797e-31 0
-4.80797e-31 0.0977184 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.76617e-32 -7.86751e-18 0
--7.86751e-18 3.39807e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-305.334 26.28 -3.74062e-29
-26.28 589.544 -1.69867e-31
-2.89246e-29 1.073e-31 209.545
-
-------------------------
---- Prestrain Output ---
-Bhat_: 362.637 -142.134 2.43166e-28
-Beff_: 1.21308 -0.295167 9.93152e-31 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=305.334
-q2=589.544
-q3=209.545
-q12=26.28
-q13=-3.74062e-29
-q23=-1.69867e-31
-q_onetwo=26.280029
-b1=1.213077
-b2=-0.295167
-b3=0.000000
-mu_gamma=209.544838
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.05334e+02 & 5.89544e+02 & 2.09545e+02 & 2.62800e+01 & -3.74062e-29 & -1.69867e-31 & 1.21308e+00 & -2.95167e-01 & 9.93152e-31 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/1/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/1/BMatrix.txt
deleted file mode 100644
index b27ac9109230e0ff4122bd65cea10b60c94b1073..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.74721683094474689
-1 2 -0.431854985698120308
-1 3 -5.84630560666126324e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/1/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/1/QMatrix.txt
deleted file mode 100644
index fbda5fc359f97b1c0eb6dc0efed2f1cddad73e7b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 315.986734638774749
-1 2 28.4165214680945937
-1 3 1.32658054569392806e-30
-2 1 28.4165214680950413
-2 2 605.235748478189748
-2 3 4.68809867062740951e-30
-3 1 -1.51932315987481074e-28
-3 2 -2.05530334109993845e-29
-3 3 212.300314307290364
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/1/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/1/parameter.txt
deleted file mode 100644
index 23cacfffe7ac1743e8de3970520ef790b1d315ab..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 13.64338887
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/1/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/1/wood_european_beech_log.txt
deleted file mode 100644
index 1145352d652c0926571c2539622be70255a17a95..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/1/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.233284 9.69058e-30 0
-9.69058e-30 0.0101698 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.00999254 1.11162e-30 0
-1.11162e-30 0.0974998 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--7.56699e-32 -3.01988e-18 0
--3.01988e-18 -1.36803e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-315.987 28.4165 1.32658e-30
-28.4165 605.236 4.6881e-30
--1.51932e-28 -2.0553e-29 212.3
-
-------------------------
---- Prestrain Output ---
-Bhat_: 539.826 -211.724 -1.49776e-27
-Beff_: 1.74722 -0.431855 -5.84631e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=315.987
-q2=605.236
-q3=212.3
-q12=28.4165
-q13=1.32658e-30
-q23=4.6881e-30
-q_onetwo=28.416521
-b1=1.747217
-b2=-0.431855
-b3=-0.000000
-mu_gamma=212.300314
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.15987e+02 & 6.05236e+02 & 2.12300e+02 & 2.84165e+01 & 1.32658e-30 & 4.68810e-30 & 1.74722e+00 & -4.31855e-01 & -5.84631e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/2/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/2/BMatrix.txt
deleted file mode 100644
index 82712b2d6b47b5d07f5973ce3e1db1a3c438ba28..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.35190162820338777
-1 2 -0.591227643058709118
-1 3 4.38024227344357821e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/2/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/2/QMatrix.txt
deleted file mode 100644
index 58aa21077b08d0cdce72f97be11d3721334c4689..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 328.085006014902774
-1 2 30.9488820417910553
-1 3 -4.35568316222617261e-30
-2 1 30.9488820417903092
-2 2 623.10614499795588
-2 3 4.60451331104100348e-30
-3 1 7.43002619664811867e-28
-3 2 6.39535455360702413e-29
-3 3 215.429464009525645
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/2/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/2/parameter.txt
deleted file mode 100644
index 1b0b796f34fbcecdcb056432bd2b48af88d3876a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 12.41305478
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/2/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/2/wood_european_beech_log.txt
deleted file mode 100644
index b46ce23e7e3e114a72daa39735e0a4cdbedcd35b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/2/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.231775 0 0
-0 0.0106703 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0105059 0 0
-0 0.0972686 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-3.99152e-31 -2.4294e-19 0
--2.4294e-19 7.87597e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-328.085 30.9489 -4.35568e-30
-30.9489 623.106 4.60451e-30
-7.43003e-28 6.39535e-29 215.429
-
-------------------------
---- Prestrain Output ---
-Bhat_: 753.326 -295.609 1.1146e-26
-Beff_: 2.3519 -0.591228 4.38024e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=328.085
-q2=623.106
-q3=215.429
-q12=30.9489
-q13=-4.35568e-30
-q23=4.60451e-30
-q_onetwo=30.948882
-b1=2.351902
-b2=-0.591228
-b3=0.000000
-mu_gamma=215.429464
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.28085e+02 & 6.23106e+02 & 2.15429e+02 & 3.09489e+01 & -4.35568e-30 & 4.60451e-30 & 2.35190e+00 & -5.91228e-01 & 4.38024e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/3/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/3/BMatrix.txt
deleted file mode 100644
index 253485faeba3ed1031a9d2f869bde4cf0af17e5e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.71866845877622554
-1 2 -0.690194332731962734
-1 3 -2.08049887556767705e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/3/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/3/QMatrix.txt
deleted file mode 100644
index d9e7197922b55ba9f09d23b48fc07d4b372362d2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 335.44443009692975
-1 2 32.5443746778594871
-1 3 -2.06074504049434236e-29
-2 1 32.5443746778596577
-2 2 634.001301001279444
-2 3 -2.59461282107848414e-30
-3 1 -1.62487302355124666e-29
-3 2 4.82491991388277131e-30
-3 3 217.332450788238617
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/3/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/3/parameter.txt
deleted file mode 100644
index 3ab41d62a901caa341c63e0f671904b3fff6ca30..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 11.66482931
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/3/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/3/wood_european_beech_log.txt
deleted file mode 100644
index 093e4a03d6f0b72a45954bbaa082edc44006ace0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/3/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.230907 0 0
-0 0.0109753 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0108185 0 0
-0 0.0971364 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.47517e-32 -3.31117e-19 0
--3.31117e-19 -3.24018e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-335.444 32.5444 -2.06075e-29
-32.5444 634.001 -2.59461e-30
--1.62487e-29 4.82492e-30 217.332
-
-------------------------
---- Prestrain Output ---
-Bhat_: 889.5 -349.107 -4.99665e-28
-Beff_: 2.71867 -0.690194 -2.0805e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=335.444
-q2=634.001
-q3=217.332
-q12=32.5444
-q13=-2.06075e-29
-q23=-2.59461e-30
-q_onetwo=32.544375
-b1=2.718668
-b2=-0.690194
-b3=-0.000000
-mu_gamma=217.332451
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.35444e+02 & 6.34001e+02 & 2.17332e+02 & 3.25444e+01 & -2.06075e-29 & -2.59461e-30 & 2.71867e+00 & -6.90194e-01 & -2.08050e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/4/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/4/BMatrix.txt
deleted file mode 100644
index 482e2c2a77fcabaa54eca178a97c739a8e4c1705..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.9961249524663085
-1 2 -0.766178724462287963
-1 3 2.02452020099075162e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/4/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/4/QMatrix.txt
deleted file mode 100644
index 809c0b2bff057ee7879388decdf5030252bde973..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 341.023009642631223
-1 2 33.781494341820931
-1 3 6.83445129714976451e-30
-2 1 33.7814943418196947
-2 2 642.272014006948893
-2 3 1.33235833552708976e-29
-3 1 4.31449620244680706e-28
-3 2 1.31969118789025237e-28
-3 3 218.77455792090413
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/4/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/4/parameter.txt
deleted file mode 100644
index 391a2bf4441d18b9c73c1769757935cd7b532d0d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 11.09781471
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/4/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/4/wood_european_beech_log.txt
deleted file mode 100644
index a86495ab512d0d7d3ba6d8ae5f5b0ca84b91442a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/4/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.230273 0 0
-0 0.0112068 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0110557 0 0
-0 0.0970403 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.65521e-31 9.24008e-18 0
-9.24008e-18 2.63001e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-341.023 33.7815 6.83445e-30
-33.7815 642.272 1.33236e-29
-4.3145e-28 1.31969e-28 218.775
-
-------------------------
---- Prestrain Output ---
-Bhat_: 995.865 -390.882 5.6207e-27
-Beff_: 2.99612 -0.766179 2.02452e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=341.023
-q2=642.272
-q3=218.775
-q12=33.7815
-q13=6.83445e-30
-q23=1.33236e-29
-q_onetwo=33.781494
-b1=2.996125
-b2=-0.766179
-b3=0.000000
-mu_gamma=218.774558
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.41023e+02 & 6.42272e+02 & 2.18775e+02 & 3.37815e+01 & 6.83445e-30 & 1.33236e-29 & 2.99612e+00 & -7.66179e-01 & 2.02452e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/5/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/5/BMatrix.txt
deleted file mode 100644
index b25bfb12028de7d2d3e09eebffe079b5e27ef270..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.80702510779013625
-1 2 -0.99356874581675747
-1 3 4.17782921610859132e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/5/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/5/QMatrix.txt
deleted file mode 100644
index cc9c32f26654e2219ccf440aac91b840a59236c9..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 357.385455166212182
-1 2 37.5476183903305625
-1 3 1.19338323074010682e-28
-2 1 37.547618390329994
-2 2 666.588358047611791
-2 3 -1.73951918506999529e-29
-3 1 5.50300887202620269e-28
-3 2 1.09745228114263782e-28
-3 3 223.001625544819092
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/5/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/5/parameter.txt
deleted file mode 100644
index 861b07bc1e875136fb5095ba4ff5be4e8a86befe..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 9.435795985
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/5/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/5/wood_european_beech_log.txt
deleted file mode 100644
index 24fff293a64462021f90580e0d34ce77760bf31f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/5/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.228524 0 0
-0 0.0118871 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0117522 0 0
-0 0.0967777 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.36843e-31 -3.93107e-18 0
--3.93107e-18 4.84859e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-357.385 37.5476 1.19338e-28
-37.5476 666.588 -1.73952e-29
-5.50301e-28 1.09745e-28 223.002
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1323.27 -519.357 1.13026e-26
-Beff_: 3.80703 -0.993569 4.17783e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=357.385
-q2=666.588
-q3=223.002
-q12=37.5476
-q13=1.19338e-28
-q23=-1.73952e-29
-q_onetwo=37.547618
-b1=3.807025
-b2=-0.993569
-b3=0.000000
-mu_gamma=223.001626
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.57385e+02 & 6.66588e+02 & 2.23002e+02 & 3.75476e+01 & 1.19338e-28 & -1.73952e-29 & 3.80703e+00 & -9.93569e-01 & 4.17783e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/6/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/6/BMatrix.txt
deleted file mode 100644
index be8657c5a7c7ec0fdcf0db4b7caa753e557a9c73..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 4.03873445069710524
-1 2 -1.05995320800370529
-1 3 1.36076669459033724e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/6/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/6/QMatrix.txt
deleted file mode 100644
index 655f1ff64c6cb9651d8618f4c60a9a720c897fe2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 362.077597710087787
-1 2 38.6653780788820356
-1 3 7.65965450042136346e-29
-2 1 38.6653780788812682
-2 2 673.576799924798138
-2 3 2.35949529346769039e-29
-3 1 1.91929433331978192e-28
-3 2 5.49556981433154364e-29
-3 3 224.212841852790206
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/6/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/6/parameter.txt
deleted file mode 100644
index 4dc714627ad1059b77194447695b20aaa3a0c7c6..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.22
-h = 0.0053
-omega_flat = 17.17547062
-omega_target = 8.959564147
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_2/6/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_2/6/wood_european_beech_log.txt
deleted file mode 100644
index 23e4ac9988a480ac380211e83f971bdf72e55340..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_2/6/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.228051 8.83488e-30 0
-8.83488e-30 0.0120825 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0119521 2.30937e-30 0
-2.30937e-30 0.0967075 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-7.67493e-32 8.75336e-20 0
-8.75336e-20 1.40158e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-362.078 38.6654 7.65965e-29
-38.6654 673.577 2.3595e-29
-1.91929e-28 5.49557e-29 224.213
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1421.35 -557.801 3.76792e-27
-Beff_: 4.03873 -1.05995 1.36077e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=362.078
-q2=673.577
-q3=224.213
-q12=38.6654
-q13=7.65965e-29
-q23=2.3595e-29
-q_onetwo=38.665378
-b1=4.038734
-b2=-1.059953
-b3=0.000000
-mu_gamma=224.212842
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.62078e+02 & 6.73577e+02 & 2.24213e+02 & 3.86654e+01 & 7.65965e-29 & 2.35950e-29 & 4.03873e+00 & -1.05995e+00 & 1.36077e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/0/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/0/BMatrix.txt
deleted file mode 100644
index 5975624257523d290a4cdf64017543d968dfda4f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 0.888018894288113203
-1 2 -0.363071170868670634
-1 3 -6.8393725826953037e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/0/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/0/QMatrix.txt
deleted file mode 100644
index 5f2dce579015187f26e09b702421e55ee6b4700c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 303.750850362798019
-1 2 22.2901008761475694
-1 3 -5.33097408606386884e-29
-2 1 22.2901008761482515
-2 2 461.524556065935087
-2 3 9.07883375784142981e-31
-3 1 -2.66640803580283758e-28
-3 2 3.57211764959721557e-29
-3 3 208.891179720402704
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/0/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/0/parameter.txt
deleted file mode 100644
index 2bbd2fe2c4362735dafe912c705b19c7bba9c3a7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.14061081
-omega_target = 14.98380876
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/0/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/0/wood_european_beech_log.txt
deleted file mode 100644
index 9926aef480c9c69e9d498cfd7f3ee6580b16640d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/0/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.231779 0 0
-0 0.0105971 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0104946 0 0
-0 0.135415 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.17439e-31 5.38669e-18 0
-5.38669e-18 -4.27837e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-303.751 22.2901 -5.33097e-29
-22.2901 461.525 9.07883e-31
--2.66641e-28 3.57212e-29 208.891
-
-------------------------
---- Prestrain Output ---
-Bhat_: 261.644 -147.772 -1.67844e-27
-Beff_: 0.888019 -0.363071 -6.83937e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=303.751
-q2=461.525
-q3=208.891
-q12=22.2901
-q13=-5.33097e-29
-q23=9.07883e-31
-q_onetwo=22.290101
-b1=0.888019
-b2=-0.363071
-b3=-0.000000
-mu_gamma=208.891180
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.03751e+02 & 4.61525e+02 & 2.08891e+02 & 2.22901e+01 & -5.33097e-29 & 9.07883e-31 & 8.88019e-01 & -3.63071e-01 & -6.83937e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/1/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/1/BMatrix.txt
deleted file mode 100644
index 6e3917e83769661595e63f238cdd7d90aa75424e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.30508274038096705
-1 2 -0.538889045251408572
-1 3 -1.51367430075867004e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/1/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/1/QMatrix.txt
deleted file mode 100644
index 716636d4afa159e954eebc7faeb369d6766ccab2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 313.675435374170945
-1 2 24.020025141600911
-1 3 2.54407641933776307e-29
-2 1 24.0200251416029893
-2 2 473.811929529085603
-2 3 5.95921243392298518e-30
-3 1 -7.28007590171598279e-29
-3 2 -2.4535429994642681e-29
-3 3 211.465693328505836
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/1/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/1/parameter.txt
deleted file mode 100644
index a5ae665d6a39cc9cd835ff01d7dc5d75cd84acbd..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.14061081
-omega_target = 13.97154915
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/1/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/1/wood_european_beech_log.txt
deleted file mode 100644
index b06fdf82e687f03805c8d572f48d297e0cf24a6e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/1/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.23073 4.76847e-30 0
-4.76847e-30 0.0110612 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0109644 5.28137e-31 0
-5.28137e-31 0.135078 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--2.46557e-32 -3.09367e-18 0
--3.09367e-18 -3.53433e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-313.675 24.02 2.54408e-29
-24.02 473.812 5.95921e-30
--7.28008e-29 -2.45354e-29 211.466
-
-------------------------
---- Prestrain Output ---
-Bhat_: 396.428 -223.984 -4.01879e-28
-Beff_: 1.30508 -0.538889 -1.51367e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=313.675
-q2=473.812
-q3=211.466
-q12=24.02
-q13=2.54408e-29
-q23=5.95921e-30
-q_onetwo=24.020025
-b1=1.305083
-b2=-0.538889
-b3=-0.000000
-mu_gamma=211.465693
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.13675e+02 & 4.73812e+02 & 2.11466e+02 & 2.40200e+01 & 2.54408e-29 & 5.95921e-30 & 1.30508e+00 & -5.38889e-01 & -1.51367e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/2/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/2/BMatrix.txt
deleted file mode 100644
index 76a2d8bb2756a6dae3c275afa2088a259e2c6911..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.79892448477151423
-1 2 -0.751085958674864496
-1 3 1.01442609214623335e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/2/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/2/QMatrix.txt
deleted file mode 100644
index ae38f6adc223678f0cab5728d05978a9b984c23e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 325.429115093306848
-1 2 26.1565314786407512
-1 3 -2.34655304424140816e-30
-2 1 26.1565314786419343
-2 2 488.391939970416161
-2 3 1.20332102925314496e-30
-3 1 2.68140351019715306e-28
-3 2 3.13149909473036588e-29
-3 3 214.513767998696522
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/2/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/2/parameter.txt
deleted file mode 100644
index 9c040f67472caf2803ca81b355822d38d96134de..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.14061081
-omega_target = 12.77309253
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/2/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/2/wood_european_beech_log.txt
deleted file mode 100644
index 9ad5c49ccd7b4a5e1abdfb198d69f1c45b025856..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/2/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.229562 0 0
-0 0.0116123 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0115222 0 0
-0 0.134705 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-9.59546e-32 -1.13449e-17 0
--1.13449e-17 2.77514e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-325.429 26.1565 -2.34655e-30
-26.1565 488.392 1.20332e-30
-2.6814e-28 3.1315e-29 214.514
-
-------------------------
---- Prestrain Output ---
-Bhat_: 565.777 -319.771 2.63493e-27
-Beff_: 1.79892 -0.751086 1.01443e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=325.429
-q2=488.392
-q3=214.514
-q12=26.1565
-q13=-2.34655e-30
-q23=1.20332e-30
-q_onetwo=26.156531
-b1=1.798924
-b2=-0.751086
-b3=0.000000
-mu_gamma=214.513768
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.25429e+02 & 4.88392e+02 & 2.14514e+02 & 2.61565e+01 & -2.34655e-30 & 1.20332e-30 & 1.79892e+00 & -7.51086e-01 & 1.01443e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/3/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/3/BMatrix.txt
deleted file mode 100644
index 57869a01ede1f26f105466559d5f9d6a7dd155a8..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.11351306952047935
-1 2 -0.888405173079592658
-1 3 1.27346347145998165e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/3/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/3/QMatrix.txt
deleted file mode 100644
index cfecff5418397025001ab7c0646b8e1c396379b1..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 332.92013010337962
-1 2 27.5678040586021424
-1 3 -2.57735648877677451e-29
-2 1 27.5678040586032189
-2 2 497.699616739978637
-2 3 -4.68078013683873802e-30
-3 1 2.0332860867890775e-28
-3 2 -5.94813750941514078e-29
-3 3 216.455585805768351
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/3/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/3/parameter.txt
deleted file mode 100644
index 63062a787f7fc26cf1e771e4083314a1625cc4c7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.14061081
-omega_target = 12.00959929
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/3/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/3/wood_european_beech_log.txt
deleted file mode 100644
index 9ce87f94c4598cff0873aaae538c507c0b139a77..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/3/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.228857 0 0
-0 0.0119644 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0118784 0 0
-0 0.13448 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-8.21459e-32 -4.23129e-19 0
--4.23129e-19 3.87368e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-332.92 27.5678 -2.57736e-29
-27.5678 497.7 -4.68078e-30
-2.03329e-28 -5.94814e-29 216.456
-
-------------------------
---- Prestrain Output ---
-Bhat_: 679.14 -383.894 3.23906e-27
-Beff_: 2.11351 -0.888405 1.27346e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=332.92
-q2=497.7
-q3=216.456
-q12=27.5678
-q13=-2.57736e-29
-q23=-4.68078e-30
-q_onetwo=27.567804
-b1=2.113513
-b2=-0.888405
-b3=0.000000
-mu_gamma=216.455586
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.32920e+02 & 4.97700e+02 & 2.16456e+02 & 2.75678e+01 & -2.57736e-29 & -4.68078e-30 & 2.11351e+00 & -8.88405e-01 & 1.27346e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/4/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/4/BMatrix.txt
deleted file mode 100644
index 13370ca94877308c0c0510c005f7ca0528ef863e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.3564106106421594
-1 2 -0.995521307111207787
-1 3 -2.12264293066437136e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/4/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/4/QMatrix.txt
deleted file mode 100644
index 1523c4900e69d37adfea019d45aa3dcec6d83112..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 338.707013847318535
-1 2 28.6844379761628403
-1 3 -1.57833810802422753e-29
-2 1 28.6844379761595007
-2 2 504.897845624664797
-2 3 -5.67764147605357129e-31
-3 1 -2.95919385724138452e-28
-3 2 2.78381721795209232e-29
-3 3 217.955089308235671
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/4/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/4/parameter.txt
deleted file mode 100644
index e8cb7a45c217a7bb28edc05d138cc423e8d1adcf..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.14061081
-omega_target = 11.42001731
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/4/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/4/wood_european_beech_log.txt
deleted file mode 100644
index 91c1a8c8b4d661efdf67628071f35a2b820cb63b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/4/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.228333 0 0
-0 0.0122367 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0121538 0 0
-0 0.134314 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.37125e-31 -6.12318e-18 0
--6.12318e-18 -4.75814e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-338.707 28.6844 -1.57834e-29
-28.6844 504.898 -5.67764e-31
--2.95919e-28 2.78382e-29 217.955
-
-------------------------
---- Prestrain Output ---
-Bhat_: 769.577 -435.044 -5.35143e-27
-Beff_: 2.35641 -0.995521 -2.12264e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=338.707
-q2=504.898
-q3=217.955
-q12=28.6844
-q13=-1.57834e-29
-q23=-5.67764e-31
-q_onetwo=28.684438
-b1=2.356411
-b2=-0.995521
-b3=-0.000000
-mu_gamma=217.955089
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.38707e+02 & 5.04898e+02 & 2.17955e+02 & 2.86844e+01 & -1.57834e-29 & -5.67764e-31 & 2.35641e+00 & -9.95521e-01 & -2.12264e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/5/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/5/BMatrix.txt
deleted file mode 100644
index baed026d232ba9bfe5c71063ab41e14520e51d8a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.12178458865361863
-1 2 -1.33892605865016301
-1 3 -2.0384347807883082e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/5/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/5/QMatrix.txt
deleted file mode 100644
index 9566ac548eaf3de462fcba748c13eb5c68adf54e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 356.965337739626762
-1 2 32.358214893228201
-1 3 3.64786538906497568e-29
-2 1 32.3582148932296008
-2 2 527.65317561488132
-2 3 1.20713437054303169e-29
-3 1 -3.64801232397803751e-28
-3 2 -7.50719002137871569e-29
-3 3 222.682052674732489
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/5/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/5/parameter.txt
deleted file mode 100644
index 8b245b8da67121dc4d1cfec47ff8b843887ec54b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.14061081
-omega_target = 9.561447179
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/5/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/5/wood_european_beech_log.txt
deleted file mode 100644
index adb0eb4917eb0b4f1f600a8960ab7d716dc19bc3..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/5/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.226784 0 0
-0 0.0130978 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0130246 0 0
-0 0.133824 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.13515e-31 -1.02825e-18 0
--1.02825e-18 -3.19398e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-356.965 32.3582 3.64787e-29
-32.3582 527.653 1.20713e-29
--3.64801e-28 -7.50719e-29 222.682
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1071.04 -605.473 -5.57754e-27
-Beff_: 3.12178 -1.33893 -2.03843e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=356.965
-q2=527.653
-q3=222.682
-q12=32.3582
-q13=3.64787e-29
-q23=1.20713e-29
-q_onetwo=32.358215
-b1=3.121785
-b2=-1.338926
-b3=-0.000000
-mu_gamma=222.682053
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.56965e+02 & 5.27653e+02 & 2.22682e+02 & 3.23582e+01 & 3.64787e-29 & 1.20713e-29 & 3.12178e+00 & -1.33893e+00 & -2.03843e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/6/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/6/BMatrix.txt
deleted file mode 100644
index 858649a03b6a27bf2ec88ce309d84b3e4974810a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 3.36738648827831799
-1 2 -1.45092034536636327
-1 3 -1.07391758819950018e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/6/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/6/QMatrix.txt
deleted file mode 100644
index 9ab41623803ce00c1faf628ace7895134e488307..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 362.833829920313804
-1 2 33.5875215742998847
-1 3 4.7676780959294901e-29
-2 1 33.5875215743010713
-2 2 534.980886738369691
-2 3 3.85494137668549128e-30
-3 1 -1.13869304902897546e-28
-3 2 7.24868712730886917e-30
-3 3 224.199767028830422
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/6/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/6/parameter.txt
deleted file mode 100644
index ca8d7ec33acd010f4ca19579d432cd3ad586d9d1..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.34
-h = 0.0063
-omega_flat = 17.14061081
-omega_target = 8.964704969
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_3/6/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_3/6/wood_european_beech_log.txt
deleted file mode 100644
index 888c505aac624ccdf71d7f8678163256711c7773..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_3/6/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.226319 0 0
-0 0.0133752 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.013305 0 0
-0 0.133678 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--4.73317e-32 6.06935e-18 0
-6.06935e-18 -1.78063e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-362.834 33.5875 4.76768e-29
-33.5875 534.981 3.85494e-30
--1.13869e-28 7.24869e-30 224.2
-
-------------------------
---- Prestrain Output ---
-Bhat_: 1173.07 -663.112 -2.80168e-27
-Beff_: 3.36739 -1.45092 -1.07392e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=362.834
-q2=534.981
-q3=224.2
-q12=33.5875
-q13=4.76768e-29
-q23=3.85494e-30
-q_onetwo=33.587522
-b1=3.367386
-b2=-1.450920
-b3=-0.000000
-mu_gamma=224.199767
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.62834e+02 & 5.34981e+02 & 2.24200e+02 & 3.35875e+01 & 4.76768e-29 & 3.85494e-30 & 3.36739e+00 & -1.45092e+00 & -1.07392e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/0/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/0/BMatrix.txt
deleted file mode 100644
index 8f40abe6c5826721cd6107196ca8ca42a2383138..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 0.629334607532929691
-1 2 -0.413228766006793202
-1 3 -6.54889290933756321e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/0/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/0/QMatrix.txt
deleted file mode 100644
index 3f1abb9def5f57ff965d3cfb05c0caba17cf7590..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 312.84066156510022
-1 2 20.1442519996664871
-1 3 -3.86603473316516176e-29
-2 1 20.1442519996660145
-2 2 381.577433311366065
-2 3 -1.56847734670896488e-30
-3 1 -2.61950844478257189e-28
-3 2 8.13012202048741462e-29
-3 3 208.562187778097865
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/0/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/0/parameter.txt
deleted file mode 100644
index eeb849b30c553b5d422fd328cdc52ff1a2cb9d3b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.07559686
-omega_target = 15.11316339
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/0/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/0/wood_european_beech_log.txt
deleted file mode 100644
index b4ba1730bca6193f9a72e691a6f366d9c46d1780..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/0/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.214951 -4.39831e-34 0
--4.39831e-34 0.0109616 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0109105 7.68912e-33 0
-7.68912e-33 0.167779 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--1.10851e-31 1.20451e-17 0
-1.20451e-17 -6.1768e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-312.841 20.1443 -3.86603e-29
-20.1443 381.577 -1.56848e-30
--2.61951e-28 8.13012e-29 208.562
-
-------------------------
---- Prestrain Output ---
-Bhat_: 188.557 -145.001 -1.5643e-27
-Beff_: 0.629335 -0.413229 -6.54889e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=312.841
-q2=381.577
-q3=208.562
-q12=20.1443
-q13=-3.86603e-29
-q23=-1.56848e-30
-q_onetwo=20.144252
-b1=0.629335
-b2=-0.413229
-b3=-0.000000
-mu_gamma=208.562188
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.12841e+02 & 3.81577e+02 & 2.08562e+02 & 2.01443e+01 & -3.86603e-29 & -1.56848e-30 & 6.29335e-01 & -4.13229e-01 & -6.54889e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/1/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/1/BMatrix.txt
deleted file mode 100644
index 7889302eda9e328c724af1d4167ddc20a65be6d5..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 0.930568829859895752
-1 2 -0.613780762609916541
-1 3 5.36799267402824536e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/1/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/1/QMatrix.txt
deleted file mode 100644
index 2bf6643eb7bcd2c3a5660b22e930273c2340e83a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 322.002694849312206
-1 2 21.6038821691577247
-1 3 4.61144665884079753e-30
-2 1 21.6038821691562859
-2 2 391.625995128890054
-2 3 -2.83959111000454054e-30
-3 1 9.6934339262027579e-29
-3 2 -6.95957489636903426e-29
-3 3 210.935607547800174
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/1/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/1/parameter.txt
deleted file mode 100644
index 5540a8f8bba7b5972e6fd7bdd031236ddb6908dd..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.07559686
-omega_target = 14.17997082
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/1/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/1/wood_european_beech_log.txt
deleted file mode 100644
index 5cda8f5153c115b893b025dfe849698075d77869..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/1/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.214198 0 0
-0 0.0114122 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0113637 0 0
-0 0.167333 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-5.74701e-32 1.02348e-18 0
-1.02348e-18 3.533e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-322.003 21.6039 4.61145e-30
-21.6039 391.626 -2.83959e-30
-9.69343e-29 -6.95957e-29 210.936
-
-------------------------
---- Prestrain Output ---
-Bhat_: 286.386 -220.269 1.26522e-27
-Beff_: 0.930569 -0.613781 5.36799e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=322.003
-q2=391.626
-q3=210.936
-q12=21.6039
-q13=4.61145e-30
-q23=-2.83959e-30
-q_onetwo=21.603882
-b1=0.930569
-b2=-0.613781
-b3=0.000000
-mu_gamma=210.935608
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.22003e+02 & 3.91626e+02 & 2.10936e+02 & 2.16039e+01 & 4.61145e-30 & -2.83959e-30 & 9.30569e-01 & -6.13781e-01 & 5.36799e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/2/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/2/BMatrix.txt
deleted file mode 100644
index e47f7b8029cff8f18dfce3bfa25de6e903d89653..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.29434817154833848
-1 2 -0.858121606718679097
-1 3 4.59552118470703921e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/2/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/2/QMatrix.txt
deleted file mode 100644
index 618bb356e49323a9bb394b4f5efd803f33d99610..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 333.031417165489643
-1 2 23.4315932635608029
-1 3 2.3222092897443535e-29
-2 1 23.4315932635636557
-2 2 403.732812298977763
-2 3 2.47308664158764956e-30
-3 1 1.17707081570013008e-28
-3 2 -6.92749354405336637e-30
-3 3 213.790683300929572
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/2/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/2/parameter.txt
deleted file mode 100644
index 0502ee63b23145e6f367455c753d942f65608b11..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.07559686
-omega_target = 13.05739844
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/2/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/2/wood_european_beech_log.txt
deleted file mode 100644
index c0b182f029e108ad326feefd5efd293f43da53c5..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/2/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.213342 0 0
-0 0.011956 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0119106 0 0
-0 0.166826 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-4.07853e-32 -1.25461e-18 0
--1.25461e-18 1.95459e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-333.031 23.4316 2.32221e-29
-23.4316 403.733 2.47309e-30
-1.17707e-28 -6.92749e-30 213.791
-
-------------------------
---- Prestrain Output ---
-Bhat_: 410.951 -316.123 1.14078e-27
-Beff_: 1.29435 -0.858122 4.59552e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=333.031
-q2=403.733
-q3=213.791
-q12=23.4316
-q13=2.32221e-29
-q23=2.47309e-30
-q_onetwo=23.431593
-b1=1.294348
-b2=-0.858122
-b3=0.000000
-mu_gamma=213.790683
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.33031e+02 & 4.03733e+02 & 2.13791e+02 & 2.34316e+01 & 2.32221e-29 & 2.47309e-30 & 1.29435e+00 & -8.58122e-01 & 4.59552e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/3/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/3/BMatrix.txt
deleted file mode 100644
index 5193934400406562aa8ba93113178f7d1f1894e8..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.53304778949421516
-1 2 -1.01964423760620693
-1 3 1.18963511285505427e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/3/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/3/QMatrix.txt
deleted file mode 100644
index dbd6df0bba945718c4724535657a08aa43c570ee..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 340.250810371440707
-1 2 24.6697846682606716
-1 3 -5.01974380705089153e-29
-2 1 24.669784668261002
-2 2 411.664198549653975
-2 3 -1.77512962974171529e-30
-3 1 2.63133591347105406e-28
-3 2 -9.56099395610442216e-30
-3 3 215.658269117771624
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/3/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/3/parameter.txt
deleted file mode 100644
index cc114cdcbee67e72ce25863ab4c8d4b3cb004d4f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.07559686
-omega_target = 12.32309209
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/3/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/3/wood_european_beech_log.txt
deleted file mode 100644
index 4dae878763552007b78fd2e935e4def4a0ae21e2..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/3/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.21281 -2.66081e-30 0
--2.66081e-30 0.0123126 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0122692 2.37775e-31 0
-2.37775e-31 0.166512 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-8.8982e-32 1.06173e-17 0
-1.06173e-17 4.29173e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-340.251 24.6698 -5.01974e-29
-24.6698 411.664 -1.77513e-30
-2.63134e-28 -9.56099e-30 215.658
-
-------------------------
---- Prestrain Output ---
-Bhat_: 496.466 -381.931 2.97869e-27
-Beff_: 1.53305 -1.01964 1.18964e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=340.251
-q2=411.664
-q3=215.658
-q12=24.6698
-q13=-5.01974e-29
-q23=-1.77513e-30
-q_onetwo=24.669785
-b1=1.533048
-b2=-1.019644
-b3=0.000000
-mu_gamma=215.658269
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.40251e+02 & 4.11664e+02 & 2.15658e+02 & 2.46698e+01 & -5.01974e-29 & -1.77513e-30 & 1.53305e+00 & -1.01964e+00 & 1.18964e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/4/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/4/BMatrix.txt
deleted file mode 100644
index c9db3e03c9ad3b60bd8cacb8adb52355da0d504e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.72098482922552654
-1 2 -1.14744657779775872
-1 3 3.91825309510527099e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/4/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/4/QMatrix.txt
deleted file mode 100644
index ccea1bdd7273e9e9e9062263a6d35740211cd985..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 345.926976950185121
-1 2 25.6664796283641685
-1 3 2.08401027422254017e-29
-2 1 25.6664796283634722
-2 2 417.903558759234386
-2 3 -1.57155883461998446e-30
-3 1 4.44003335674174342e-28
-3 2 -2.59958830228052177e-28
-3 3 217.125790025531217
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/4/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/4/parameter.txt
deleted file mode 100644
index 432ce2be318a17bdc10e3fd17f599981c7fc0712..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.07559686
-omega_target = 11.74608518
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/4/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/4/wood_european_beech_log.txt
deleted file mode 100644
index bf6089333681bccd265676d7b911340fb01b02f7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/4/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.212406 0 0
-0 0.0125934 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0125515 0 0
-0 0.166273 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-2.2583e-31 -9.09933e-18 0
--9.09933e-18 1.43314e-31 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-345.927 25.6665 2.08401e-29
-25.6665 417.904 -1.57156e-30
-4.44003e-28 -2.59959e-28 217.126
-
-------------------------
---- Prestrain Output ---
-Bhat_: 565.884 -435.35 9.56995e-27
-Beff_: 1.72098 -1.14745 3.91825e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=345.927
-q2=417.904
-q3=217.126
-q12=25.6665
-q13=2.08401e-29
-q23=-1.57156e-30
-q_onetwo=25.666480
-b1=1.720985
-b2=-1.147447
-b3=0.000000
-mu_gamma=217.125790
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.45927e+02 & 4.17904e+02 & 2.17126e+02 & 2.56665e+01 & 2.08401e-29 & -1.57156e-30 & 1.72098e+00 & -1.14745e+00 & 3.91825e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/5/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/5/BMatrix.txt
deleted file mode 100644
index 674e2ddf1da6e148efe2eded2b80af0be11f209a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.35288504646399543
-1 2 -1.58094620095160066
-1 3 -1.45140493978968462e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/5/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/5/QMatrix.txt
deleted file mode 100644
index afbc9f1b09e7736bd78753ec6c9caa6c1931b8d7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 364.973667574458489
-1 2 29.1597737399917705
-1 3 2.48152221474406565e-29
-2 1 29.159773739991568
-2 2 438.861265726750389
-2 3 1.17705134481170306e-29
-3 1 -2.08570636398829079e-28
-3 2 8.41465803799723714e-30
-3 3 222.043866028139036
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/5/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/5/parameter.txt
deleted file mode 100644
index 4c4941fedec79ce486526cddfbd8a6d467e1ca0e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.07559686
-omega_target = 9.812372466
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/5/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/5/wood_european_beech_log.txt
deleted file mode 100644
index 054f8db86088c55ecaaaa67bb1c552734953c45c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/5/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.211143 -3.41888e-31 0
--3.41888e-31 0.0135375 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0135007 3.94723e-32 0
-3.94723e-32 0.165529 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--6.88618e-32 3.77125e-18 0
-3.77125e-18 -3.55924e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-364.974 29.1598 2.48152e-29
-29.1598 438.861 1.17705e-29
--2.08571e-28 8.41466e-30 222.044
-
-------------------------
---- Prestrain Output ---
-Bhat_: 812.641 -625.206 -3.7268e-27
-Beff_: 2.35289 -1.58095 -1.4514e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=364.974
-q2=438.861
-q3=222.044
-q12=29.1598
-q13=2.48152e-29
-q23=1.17705e-29
-q_onetwo=29.159774
-b1=2.352885
-b2=-1.580946
-b3=-0.000000
-mu_gamma=222.043866
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.64974e+02 & 4.38861e+02 & 2.22044e+02 & 2.91598e+01 & 2.48152e-29 & 1.17705e-29 & 2.35289e+00 & -1.58095e+00 & -1.45140e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/6/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/6/BMatrix.txt
deleted file mode 100644
index 15dbbfeae71d005fa53223fcff8f72785d66b053..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.58466945364569956
-1 2 -1.74132517676458631
-1 3 3.26160858382710013e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/6/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/6/QMatrix.txt
deleted file mode 100644
index 2d7c8ad2867e9b71a805f3dd67fe6a01586c3fa4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 371.949765502413925
-1 2 30.4964857903768802
-1 3 2.94466984777030813e-29
-2 1 30.4964857903752353
-2 2 446.545241351734717
-2 3 -7.35320052767046649e-30
-3 1 3.20809705973873481e-29
-3 2 -1.02525233530851167e-29
-3 3 223.84245697482865
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/6/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/6/parameter.txt
deleted file mode 100644
index e55a742522e93d4e884e8ccb19be9f57ed83ec5e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.43
-h = 0.0073
-omega_flat = 17.07559686
-omega_target = 9.10519385
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_4/6/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_4/6/wood_european_beech_log.txt
deleted file mode 100644
index d3fc190c554b76e56a608e5630e998fe11e23e4a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_4/6/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.210713 -2.01199e-30 0
--2.01199e-30 0.013884 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0138489 1.0203e-30 0
-1.0203e-30 0.165276 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.29985e-32 -1.01999e-17 0
--1.01999e-17 7.85856e-33 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-371.95 30.4965 2.94467e-29
-30.4965 446.545 -7.3532e-30
-3.2081e-29 -1.02525e-29 223.842
-
-------------------------
---- Prestrain Output ---
-Bhat_: 908.263 -698.757 8.30858e-28
-Beff_: 2.58467 -1.74133 3.26161e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=371.95
-q2=446.545
-q3=223.842
-q12=30.4965
-q13=2.94467e-29
-q23=-7.3532e-30
-q_onetwo=30.496486
-b1=2.584669
-b2=-1.741325
-b3=0.000000
-mu_gamma=223.842457
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.71950e+02 & 4.46545e+02 & 2.23842e+02 & 3.04965e+01 & 2.94467e-29 & -7.35320e-30 & 2.58467e+00 & -1.74133e+00 & 3.26161e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/0/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/0/BMatrix.txt
deleted file mode 100644
index 61bf4c02de7349b920df34927596b2ea8dc6d283..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/0/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 0.439924156703411118
-1 2 -0.401353478359851856
-1 3 -1.33917713774311741e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/0/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/0/QMatrix.txt
deleted file mode 100644
index 0573239c940e97e54ff7aea5abd7349a52dac632..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/0/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 328.656957590727984
-1 2 19.3307033947678626
-1 3 2.16486081328791633e-29
-2 1 19.3307033947683422
-2 2 343.27522247238096
-2 3 -9.07344115399714555e-30
-3 1 -1.1380929756198016e-28
-3 2 -1.41723767576839792e-29
-3 3 208.07137340394371
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/0/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/0/parameter.txt
deleted file mode 100644
index d0b8e76dd1b2ed8f051b6acb14c347d78a5c3428..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/0/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.01520754
-omega_target = 15.30614414
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/0/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/0/wood_european_beech_log.txt
deleted file mode 100644
index 4005139d3bf9a5ce1f2672a9e8f9e299d7a095b0..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/0/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.198603 0 0
-0 0.0109617 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0109478 0 0
-0 0.188228 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--3.06281e-32 -1.4463e-18 0
--1.4463e-18 -1.32067e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-328.657 19.3307 2.16486e-29
-19.3307 343.275 -9.07344e-30
--1.13809e-28 -1.41724e-29 208.071
-
-------------------------
---- Prestrain Output ---
-Bhat_: 136.826 -129.271 -3.23024e-28
-Beff_: 0.439924 -0.401353 -1.33918e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=328.657
-q2=343.275
-q3=208.071
-q12=19.3307
-q13=2.16486e-29
-q23=-9.07344e-30
-q_onetwo=19.330703
-b1=0.439924
-b2=-0.401353
-b3=-0.000000
-mu_gamma=208.071373
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.28657e+02 & 3.43275e+02 & 2.08071e+02 & 1.93307e+01 & 2.16486e-29 & -9.07344e-30 & 4.39924e-01 & -4.01353e-01 & -1.33918e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/1/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/1/BMatrix.txt
deleted file mode 100644
index 9e9590303632ffce0ce014ddc566c70a36438144..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/1/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 0.650970125236008834
-1 2 -0.594416405999156905
-1 3 3.48694300476661071e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/1/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/1/QMatrix.txt
deleted file mode 100644
index aba9b1599f2fc6c95227fbd96ad9f91d0e0389fe..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/1/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 336.775668188409043
-1 2 20.5576645525588759
-1 3 1.12674605466430846e-29
-2 1 20.5576645525585455
-2 2 351.554256318237776
-2 3 7.74917172423648218e-30
-3 1 1.21263679753312909e-28
-3 2 -3.18041240931078951e-29
-3 3 210.135302315968403
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/1/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/1/parameter.txt
deleted file mode 100644
index b0d2c55fd2d771fe89952ee2a9d7950154e2f9b4..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/1/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.01520754
-omega_target = 14.49463867
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/1/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/1/wood_european_beech_log.txt
deleted file mode 100644
index f932bde557e428ab3df47b4d231c622f1a195b77..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/1/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.198056 0 0
-0 0.0113588 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0113456 0 0
-0 0.187739 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-4.43007e-32 7.09823e-18 0
-7.09823e-18 3.07893e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-336.776 20.5577 1.12675e-29
-20.5577 351.554 7.74917e-30
-1.21264e-28 -3.18041e-29 210.135
-
-------------------------
---- Prestrain Output ---
-Bhat_: 207.011 -195.587 8.30574e-28
-Beff_: 0.65097 -0.594416 3.48694e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=336.776
-q2=351.554
-q3=210.135
-q12=20.5577
-q13=1.12675e-29
-q23=7.74917e-30
-q_onetwo=20.557665
-b1=0.650970
-b2=-0.594416
-b3=0.000000
-mu_gamma=210.135302
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.36776e+02 & 3.51554e+02 & 2.10135e+02 & 2.05577e+01 & 1.12675e-29 & 7.74917e-30 & 6.50970e-01 & -5.94416e-01 & 3.48694e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/2/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/2/BMatrix.txt
deleted file mode 100644
index 2d2ef9f9781cfd1c5eb667068cea04fc95ac037b..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/2/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 0.920172747390642365
-1 2 -0.841121624353958652
-1 3 1.18942225067663841e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/2/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/2/QMatrix.txt
deleted file mode 100644
index b81882e3e562c134c9c183d9430a76e42187d887..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/2/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 347.072689494949373
-1 2 22.1701727096316503
-1 3 2.62373288183761915e-29
-2 1 22.1701727096318493
-2 2 362.056508873997416
-2 3 3.94584527006056882e-30
-3 1 3.76458164879766929e-28
-3 2 -1.91446370346706928e-29
-3 3 212.750716895134673
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/2/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/2/parameter.txt
deleted file mode 100644
index 050ee47ec1030d87c9702622b517e8a1f97d9837..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/2/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.01520754
-omega_target = 13.46629742
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/2/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/2/wood_european_beech_log.txt
deleted file mode 100644
index 3949bbded0b8b0f0c282355bd0f530ef7271d90f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/2/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.197396 2.8545e-30 0
-2.8545e-30 0.0118635 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.011851 -3.30222e-31 0
--3.30222e-31 0.187151 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-1.14677e-31 4.82773e-18 0
-4.82773e-18 6.89019e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-347.073 22.1702 2.62373e-29
-22.1702 362.057 3.94585e-30
-3.76458e-28 -1.91446e-29 212.751
-
-------------------------
---- Prestrain Output ---
-Bhat_: 300.719 -284.133 2.89301e-27
-Beff_: 0.920173 -0.841122 1.18942e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=347.073
-q2=362.057
-q3=212.751
-q12=22.1702
-q13=2.62373e-29
-q23=3.94585e-30
-q_onetwo=22.170173
-b1=0.920173
-b2=-0.841122
-b3=0.000000
-mu_gamma=212.750717
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.47073e+02 & 3.62057e+02 & 2.12751e+02 & 2.21702e+01 & 2.62373e-29 & 3.94585e-30 & 9.20173e-01 & -8.41122e-01 & 1.18942e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/3/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/3/BMatrix.txt
deleted file mode 100644
index 8c520a8b7bb89acd1df77393bbf23e922adff722..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/3/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.09981717181125194
-1 2 -1.0060095222047456
-1 3 1.1129634830271552e-28
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/3/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/3/QMatrix.txt
deleted file mode 100644
index 5b9b5d35efc1ba760cd232593bad2d4619486769..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/3/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 353.912010679764023
-1 2 23.2759790076002773
-1 3 1.64459009811114844e-29
-2 1 23.2759790075993571
-2 2 369.033280851314771
-2 3 -8.32540996359714315e-30
-3 1 2.33091146878111801e-27
-3 2 -6.01444150150604479e-28
-3 3 214.486325915278201
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/3/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/3/parameter.txt
deleted file mode 100644
index 92eb0b4bac35f2decac8339fa42884e36b31dd84..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/3/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.01520754
-omega_target = 12.78388234
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/3/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/3/wood_european_beech_log.txt
deleted file mode 100644
index cb723bea063bdf42de3ca636cc48e103eda4dc53..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/3/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.196979 -7.05512e-31 0
--7.05512e-31 0.0121993 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0121873 5.01799e-31 0
-5.01799e-31 0.186778 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-8.3234e-31 -8.23528e-18 0
--8.23528e-18 5.91048e-31 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-353.912 23.276 1.64459e-29
-23.276 369.033 -8.32541e-30
-2.33091e-27 -6.01444e-28 214.486
-
-------------------------
---- Prestrain Output ---
-Bhat_: 365.823 -345.652 2.70402e-26
-Beff_: 1.09982 -1.00601 1.11296e-28 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=353.912
-q2=369.033
-q3=214.486
-q12=23.276
-q13=1.64459e-29
-q23=-8.32541e-30
-q_onetwo=23.275979
-b1=1.099817
-b2=-1.006010
-b3=0.000000
-mu_gamma=214.486326
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.53912e+02 & 3.69033e+02 & 2.14486e+02 & 2.32760e+01 & 1.64459e-29 & -8.32541e-30 & 1.09982e+00 & -1.00601e+00 & 1.11296e-28 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/4/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/4/BMatrix.txt
deleted file mode 100644
index c4f90cafe0b44639789f26859db0bee5b1c4d125..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/4/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.24601613780542619
-1 2 -1.14034184949737205
-1 3 -5.56274868992305688e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/4/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/4/QMatrix.txt
deleted file mode 100644
index b89cf8ca6c6c10345c7bd3c2ae2be3a1fccc8cb7..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/4/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 359.461266865855634
-1 2 24.1935687071423047
-1 3 -1.79774004728882143e-29
-2 1 24.1935687071398782
-2 2 374.694710914329562
-2 3 -7.77266806955800646e-30
-3 1 -1.0385872795169322e-27
-3 2 2.48082284039166116e-28
-3 3 215.893565448499913
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/4/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/4/parameter.txt
deleted file mode 100644
index de3cf45338146cc687c275e484e04203ac26b97c..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/4/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.01520754
-omega_target = 12.23057715
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/4/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/4/wood_european_beech_log.txt
deleted file mode 100644
index f1747012bca1b1a8f4361d297e94ed7f11bb258e..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/4/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.196652 0 0
-0 0.012472 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0124604 0 0
-0 0.186487 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--3.67324e-31 1.09088e-18 0
-1.09088e-18 -2.60864e-31 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-359.461 24.1936 -1.79774e-29
-24.1936 374.695 -7.77267e-30
--1.03859e-27 2.48082e-28 215.894
-
-------------------------
---- Prestrain Output ---
-Bhat_: 420.306 -397.134 -1.35866e-26
-Beff_: 1.24602 -1.14034 -5.56275e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=359.461
-q2=374.695
-q3=215.894
-q12=24.1936
-q13=-1.79774e-29
-q23=-7.77267e-30
-q_onetwo=24.193569
-b1=1.246016
-b2=-1.140342
-b3=-0.000000
-mu_gamma=215.893565
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.59461e+02 & 3.74695e+02 & 2.15894e+02 & 2.41936e+01 & -1.79774e-29 & -7.77267e-30 & 1.24602e+00 & -1.14034e+00 & -5.56275e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/5/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/5/BMatrix.txt
deleted file mode 100644
index 15cb2b552a732fd65bdfbe2dca2f3a5487a2fd5a..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/5/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 1.78134022927832869
-1 2 -1.63322079509065432
-1 3 -9.22326172522742552e-30
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/5/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/5/QMatrix.txt
deleted file mode 100644
index 99bb345dd7509905e9e8d47874dea6d6c105833d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/5/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 379.673394129127701
-1 2 27.6895846892567299
-1 3 -1.86283647940911001e-29
-2 1 27.6895846892586732
-2 2 395.32017570776992
-2 3 6.30472426594605529e-30
-3 1 -1.12615676524030904e-28
-3 2 4.01302962758947862e-29
-3 3 221.010876128094736
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/5/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/5/parameter.txt
deleted file mode 100644
index 8bb31a3266867396524dcaa72685b079b930087d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/5/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.01520754
-omega_target = 10.21852839
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/5/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/5/wood_european_beech_log.txt
deleted file mode 100644
index ffb48f4e262c769fba10166a4ce9b6ce9dbb39fc..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/5/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.195543 0 0
-0 0.0134673 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0134571 0 0
-0 0.185497 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
--4.0418e-32 9.62019e-18 0
-9.62019e-18 -3.27252e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-379.673 27.6896 -1.86284e-29
-27.6896 395.32 6.30472e-30
--1.12616e-28 4.01303e-29 221.011
-
-------------------------
---- Prestrain Output ---
-Bhat_: 631.104 -596.321 -2.30459e-27
-Beff_: 1.78134 -1.63322 -9.22326e-30 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=379.673
-q2=395.32
-q3=221.011
-q12=27.6896
-q13=-1.86284e-29
-q23=6.30472e-30
-q_onetwo=27.689585
-b1=1.781340
-b2=-1.633221
-b3=-0.000000
-mu_gamma=221.010876
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.79673e+02 & 3.95320e+02 & 2.21011e+02 & 2.76896e+01 & -1.86284e-29 & 6.30472e-30 & 1.78134e+00 & -1.63322e+00 & -9.22326e-30 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/6/BMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/6/BMatrix.txt
deleted file mode 100644
index 60f803635315c5f708ac1c621cdf059635e2c93d..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/6/BMatrix.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-1 1 2.01623688784649513
-1 2 -1.84995173859702033
-1 3 1.83523047826535922e-29
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/6/QMatrix.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/6/QMatrix.txt
deleted file mode 100644
index 8dcdbd2ade45a6ed89181f3c5b88afeceb681ddc..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/6/QMatrix.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-1 1 388.499002728981282
-1 2 29.2916250098108364
-1 3 -9.65584236917984567e-30
-2 1 29.2916250098084028
-2 2 404.328541633218379
-2 3 3.02563594263234753e-31
-3 1 3.47951730227354385e-28
-3 2 5.37822581451953635e-29
-3 3 223.240865161292078
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/6/parameter.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/6/parameter.txt
deleted file mode 100644
index d346b36383690b8262327fc2dfd64991e2c0af4f..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/6/parameter.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-r = 0.49
-h = 0.008
-omega_flat = 17.01520754
-omega_target = 9.341730605
diff --git a/experiment/micro-problem/compWood/wood-bilayer/results_5/6/wood_european_beech_log.txt b/experiment/micro-problem/compWood/wood-bilayer/results_5/6/wood_european_beech_log.txt
deleted file mode 100644
index 3cc58b5d9fd9cddb87c0190dffa7e5baec8b7854..0000000000000000000000000000000000000000
--- a/experiment/micro-problem/compWood/wood-bilayer/results_5/6/wood_european_beech_log.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-Number of Grid-Elements in each direction: [16,16,16]
-solveLinearSystems: We use UMFPACK solver.
-Solver-type used: UMFPACK-Solver
----------- OUTPUT ----------
- --------------------
-Corrector-Matrix M_1:
--0.195096 0 0
-0 0.0139027 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_2:
--0.0138931 0 0
-0 0.185099 0
-0 0 0
-
- --------------------
-Corrector-Matrix M_3:
-8.60627e-32 -1.35096e-17 0
--1.35096e-17 4.55113e-32 0
-0 0 0
-
- --------------------
---- Effective moduli ---
-Qeff_:
-388.499 29.2916 -9.65584e-30
-29.2916 404.329 3.02564e-31
-3.47952e-28 5.37823e-29 223.241
-
-------------------------
---- Prestrain Output ---
-Bhat_: 729.118 -688.929 4.69904e-27
-Beff_: 2.01624 -1.84995 1.83523e-29 (Effective Prestrain)
-------------------------
-size of FiniteElementBasis: 13056
-q1=388.499
-q2=404.329
-q3=223.241
-q12=29.2916
-q13=-9.65584e-30
-q23=3.02564e-31
-q_onetwo=29.291625
-b1=2.016237
-b2=-1.849952
-b3=0.000000
-mu_gamma=223.240865
-------------------------------------------------------------------------------------------------------------------------------------------------------
- Levels | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-------------------------------------------------------------------------------------------------------------------------------------------------------
- 4 & 3.88499e+02 & 4.04329e+02 & 2.23241e+02 & 2.92916e+01 & -9.65584e-30 & 3.02564e-31 & 2.01624e+00 & -1.84995e+00 & 1.83523e-29 &
-------------------------------------------------------------------------------------------------------------------------------------------------------
diff --git a/experiment/micro-problem/compWood/wood-bilayer/wood_european_beech.py b/experiment/micro-problem/compWood/wood-bilayer/wood_european_beech.py
index 3f3e00ca1b1a7e51d8138cb6b21b19189b192b33..ec8525d5d972cb9d0c965c692b392ef4e2dec2fd 100644
--- a/experiment/micro-problem/compWood/wood-bilayer/wood_european_beech.py
+++ b/experiment/micro-problem/compWood/wood-bilayer/wood_european_beech.py
@@ -17,7 +17,7 @@ parameterSet = ParameterSet()
# Paths
#############################################
# Path for results and logfile
-parameterSet.outputPath='/home/klaus/Desktop/Dune_release/dune-microstructure/experiment/wood-bilayer/results'
+parameterSet.outputPath='/home/klaus/Desktop/Dune_TestTest/dune-microstructure/experiment/wood-bilayer/results'
parameterSet.baseName= 'wood_european_beech' #(needed for Output-Filename)
# Path for material description
@@ -25,182 +25,153 @@ parameterSet.baseName= 'wood_european_beech' #(needed for Output-Filename)
#---------------------------------------------------------------
# Wooden bilayer, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191116/#pone.0205607.ref015
-#--- define indicator function
-# x[0] : y1-component -1/2 to 1/2
-# x[1] : y2-component -1/2 to 1/2
-# x[2] : x3-component range -1/2 to 1/2
-#--- define indicator function
-def indicatorFunction(x):
- factor=1
- if (x[2]>=(0.5-param_r)):
- return 1 #Phase1
- else :
- return 2 #Phase2
-
-# --- Number of material phases
-parameterSet.Phases=2
-
-# Parameters of the model
-# -- (thickness upper layer) / (thickness)
-param_r = 0.12
-# -- thickness [meter]
-param_h = 0.0047
-# -- moisture content in the flat state [%]
-param_omega_flat = 17.32986047
-# -- moisture content in the target state [%]
-param_omega_target = 14.70179844
-# -- Drehwinkel
-param_theta = 0
-
-#
-#
-#
-# -- increment of the moisture content
-delta_omega=param_omega_target-param_omega_flat
-# moisture content for material law
-omega=param_omega_target
-
-# --- Material properties from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191116/#pone.0205607.ref015
-# --- for European beech, moisture content omega = 15%
-# --- L=direction orthogonal to layering and fibres = orthogonal to wood stem cross-section
-# --- T=tangential zu layering
-# --- R=orthogonal zu layering
-# --- in MPa
-# --- Properties are defined by affine function in dependence of moisture content omega via property = b_0+b_1 \omega
-# --- coefficients of affine function are contained in the following array
-# --- data taken from http://dx.doi.org/10.1016/j.cma.2014.10.031
-
-properties_coefficients=np.array([
- # [b_0, b_1]
- [2565.6,-59.7], # E_R [MPa]
- [885.4, -23.4], # E_T [MPa]
- [17136.7,-282.4], # E_L [MPa]
- [667.8, -15.19], # G_RT [MPa]
- [1482, -15.26], # G_RL [MPa]
- [1100, -17.72], # G_TL [MPa]
- [0.2933, -0.001012], # nu_TR [1]
- [0.383, -0.008722], # nu_LR [1]
- [0.3368, -0.009071] # nu_LT [1]
- ])
-# Compute actual material properties
-E_R = properties_coefficients[0,0]+properties_coefficients[0,1]*omega
-E_T = properties_coefficients[1,0]+properties_coefficients[1,1]*omega
-E_L = properties_coefficients[2,0]+properties_coefficients[2,1]*omega
-G_RT = properties_coefficients[3,0]+properties_coefficients[3,1]*omega
-G_LR = properties_coefficients[4,0]+properties_coefficients[4,1]*omega
-G_LT = properties_coefficients[5,0]+properties_coefficients[5,1]*omega
-nu_TR = properties_coefficients[6,0]+properties_coefficients[6,1]*omega
-nu_LR = properties_coefficients[7,0]+properties_coefficients[7,1]*omega
-nu_LT = properties_coefficients[8,0]+properties_coefficients[8,1]*omega
-# Compute the remaining Poisson ratios
-nu_TL=nu_LT*E_T/E_L
-nu_RT=nu_TR*E_R/E_T
-nu_RL=nu_LR*E_R/E_L
-#
-# --- differential swelling strain
-# --- relation to swelling strain eps: eps=alpha* delta_omega with delta_omega = change of water content in %
-alpha_L=0.00011 # PLOS paper
-alpha_R=0.00191 # PLOS paper
-alpha_T=0.00462 # PLOS paper
-# Umrechnen
-#alpha_L=(1-1/(1+delta_omega*alpha_L))/delta_omega
-#alpha_R=(1-1/(1+delta_omega*alpha_R))/delta_omega
-#alpha_T=(1-1/(1+delta_omega*alpha_T))/delta_omega
-# --- define geometry
-
-
-
-# --- PHASE 1
-# y_1-direction: L
-# y_2-direction: T
-# x_3-direction: R
-# phase1_type="orthotropic"
-# materialParameters_phase1 = [E_L,E_T,E_R,G_TL,G_RT,G_RL,nu_LT,nu_LR,nu_TR]
-# parameterSet.phase1_type="general_anisotropic"
-# [E_1,E_2,E_3]=[E_L,E_T,E_R]
-# [nu_12,nu_13,nu_23]=[nu_LT,nu_LR,nu_TR]
-# [nu_21,nu_31,nu_32]=[nu_TL,nu_RL,nu_RT]
-# [G_12,G_31,G_23]=[G_LT,G_LR,G_RT]
-# compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
-# [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
-# [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
-# [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
-# [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
-# [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
-# materialParameters_phase1 = compliance_S
-
-# def prestrain_phase1(x):
-# # hB=delta_omega * alpha with delta_omega increment of moisture content and alpha swelling factor.
-# return [[1/param_h*delta_omega*alpha_L, 0, 0], [0,1/param_h*delta_omega*alpha_T,0], [0,0,1/param_h*delta_omega*alpha_R]]
-
-#Nun mit R und T vertauscht:
-
-# y_1-direction: L
-# y_2-direction: R
-# x_3-direction: T
-# phase1_type="orthotropic"
-# materialParameters_phase1 = [E_L,E_T,E_R,G_TL,G_RT,G_RL,nu_LT,nu_LR,nu_TR]
-parameterSet.phase1_type="general_anisotropic"
-[E_1,E_2,E_3]=[E_L,E_R,E_T]
-[nu_12,nu_13,nu_23]=[nu_LR,nu_LT,nu_RT]
-[nu_21,nu_31,nu_32]=[nu_RL,nu_TL,nu_TR]
-[G_12,G_31,G_23]=[G_LR,G_LT,G_RT]
-compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
- [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
- [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
- [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
- [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
- [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
-materialParameters_phase1 = compliance_S
-
-def prestrain_phase1(x):
- # hB=delta_omega * alpha with delta_omega increment of moisture content and alpha swelling factor.
- return [[1/param_h*delta_omega*alpha_L, 0, 0], [0,1/param_h*delta_omega*alpha_R,0], [0,0,1/param_h*delta_omega*alpha_T]]
-
-# --- PHASE 2
-# y_1-direction: R
-# y_2-direction: L
-# x_3-direction: T
-parameterSet.phase2_type="general_anisotropic"
-[E_1,E_2,E_3]=[E_R,E_L,E_T]
-[nu_12,nu_13,nu_23]=[nu_RL,nu_RT,nu_LT]
-[nu_21,nu_31,nu_32]=[nu_LR,nu_TR,nu_TL]
-[G_12,G_31,G_23]=[G_LR,G_RT,G_LT]
-compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
- [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
- [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
- [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
- [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
- [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
-materialParameters_phase2 = compliance_S
-def prestrain_phase2(x):
- return [[1/param_h*delta_omega*alpha_R, 0, 0], [0,1/param_h*delta_omega*alpha_L,0], [0,0,1/param_h*delta_omega*alpha_T]]
-
-#Rotation um 2. Achse (= L)
-parameterSet.phase2_axis = 2
-# phase2_angle = param_theta
-# -- Drehwinkel
-parameterSet.phase2_angle = param_theta
-
-
-
-# # --- PHASE 3 = Phase 1 gedreht
-# # y_1-direction: L
-# # y_2-direction: R
-# # x_3-direction: T
-# parameterSet.phase3_type="general_anisotropic"
-# # Drehung um theta um Achse 2 = x_3-Achse
-# N=elast.rotation_matrix_compliance(2,param_theta)
-# materialParameters_phase3 = np.dot(np.dot(N,materialParameters_phase1),N.T)
-# materialParameters_phase3 = 0.5*(materialParameters_phase3.T+materialParameters_phase3)
-# # rotation of strain
-# def prestrain_phase3(x):
-# return elast.voigt_to_strain(np.dot(elast.rotation_matrix_compliance(2,param_theta),np.dot(elast.strain_to_voigt(np.array(prestrain_phase1(x))),N.T))).tolist()
-
-
-
-# --- Choose scale ratio gamma:
-parameterSet.gamma=1.0
+
+class Microstructure:
+ def __init__(self):
+ # self.macroPoint = macroPoint
+ self.gamma = 1.0 #in the future this might change depending on macroPoint.
+ self.phases = 2 #in the future this might change depending on macroPoint.
+ #--- Define different material phases:
+
+ # ########### Options for material phases: #################################
+ # # 1. "isotropic" 2. "orthotropic" 3. "transversely_isotropic" 4. "general_anisotropic"
+ # #########################################################################
+ # ## Notation - Parameter input :
+ # # isotropic (Lame parameters) : [mu , lambda]
+ # # orthotropic : [E1,E2,E3,G12,G23,G31,nu12,nu13,nu23] # see https://en.wikipedia.org/wiki/Poisson%27s_ratio with x=1,y=2,z=3
+ # # transversely_isotropic : [E1,E2,G12,nu12,nu23]
+ # # general_anisotropic : full compliance matrix C
+ # ######################################################################
+ # Parameters of the model
+ # -- (thickness upper layer) / (thickness)
+ self.param_r = 0.49
+ # -- thickness [meter]
+ self.param_h = 0.008
+ # -- moisture content in the flat state [%]
+ self.param_omega_flat = 17.01520754
+ # -- moisture content in the target state [%]
+ self.param_omega_target = 9.341730605
+ # -- Drehwinkel
+ self.param_theta = np.pi/4.0
+ # -- increment of the moisture content
+ self.delta_omega=self.param_omega_target-self.param_omega_flat
+ # moisture content for material law
+ self.omega=self.param_omega_target
+
+ # --- Material properties from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191116/#pone.0205607.ref015
+ # --- for European beech, moisture content omega = 15%
+ # --- L=direction orthogonal to layering and fibres = orthogonal to wood stem cross-section
+ # --- T=tangential zu layering
+ # --- R=orthogonal zu layering
+ # --- in MPa
+ # --- Properties are defined by affine function in dependence of moisture content omega via property = b_0+b_1 \omega
+ # --- coefficients of affine function are contained in the following array
+ # --- data taken from http://dx.doi.org/10.1016/j.cma.2014.10.031
+ self.properties_coefficients=np.array([
+ # [b_0, b_1]
+ [2565.6,-59.7], # E_R [MPa]
+ [885.4, -23.4], # E_T [MPa]
+ [17136.7,-282.4], # E_L [MPa]
+ [667.8, -15.19], # G_RT [MPa]
+ [1482, -15.26], # G_RL [MPa]
+ [1100, -17.72], # G_TL [MPa]
+ [0.2933, -0.001012], # nu_TR [1]
+ [0.383, -0.008722], # nu_LR [1]
+ [0.3368, -0.009071] # nu_LT [1]
+ ])
+ # Compute actual material properties
+ self.E_R = self.properties_coefficients[0,0]+self.properties_coefficients[0,1]*self.omega
+ self.E_T = self.properties_coefficients[1,0]+self.properties_coefficients[1,1]*self.omega
+ self.E_L = self.properties_coefficients[2,0]+self.properties_coefficients[2,1]*self.omega
+ self.G_RT = self.properties_coefficients[3,0]+self.properties_coefficients[3,1]*self.omega
+ self.G_LR = self.properties_coefficients[4,0]+self.properties_coefficients[4,1]*self.omega
+ self.G_LT = self.properties_coefficients[5,0]+self.properties_coefficients[5,1]*self.omega
+ self.nu_TR = self.properties_coefficients[6,0]+self.properties_coefficients[6,1]*self.omega
+ self.nu_LR = self.properties_coefficients[7,0]+self.properties_coefficients[7,1]*self.omega
+ self.nu_LT = self.properties_coefficients[8,0]+self.properties_coefficients[8,1]*self.omega
+ self# Compute the remaining Poisson ratios
+ self.nu_TL=self.nu_LT*self.E_T/self.E_L
+ self.nu_RT=self.nu_TR*self.E_R/self.E_T
+ self.nu_RL=self.nu_LR*self.E_R/self.E_L
+ #
+ # --- differential swelling strain
+ # --- relation to swelling strain eps: eps=alpha* delta_omega with delta_omega = change of water content in %
+ self.alpha_L=0.00011 # PLOS paper
+ self.alpha_R=0.00191 # PLOS paper
+ self.alpha_T=0.00462 # PLOS paper
+
+ # y_1-direction: L
+ # y_2-direction: R
+ # x_3-direction: T
+ # phase1_type="orthotropic"
+ # materialParameters_phase1 = [E_L,E_T,E_R,G_TL,G_RT,G_RL,nu_LT,nu_LR,nu_TR]
+ self.phase1_type="general_anisotropic"
+ [E_1,E_2,E_3]=[self.E_L,self.E_R,self.E_T]
+ [nu_12,nu_13,nu_23]=[self.nu_LR,self.nu_LT,self.nu_RT]
+ [nu_21,nu_31,nu_32]=[self.nu_RL,self.nu_TL,self.nu_TR]
+ [G_12,G_31,G_23]=[self.G_LR,self.G_LT,self.G_RT]
+ compliance_S=np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
+ [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
+ [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
+ [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
+ [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
+ [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
+ self.materialParameters_phase1 = compliance_S
+
+ # --- PHASE 2
+ # y_1-direction: R
+ # y_2-direction: L
+ # x_3-direction: T
+ self.phase2_type="general_anisotropic"
+ [E_1,E_2,E_3]=[self.E_R,self.E_L,self.E_T]
+ [nu_12,nu_13,nu_23]=[self.nu_RL,self.nu_RT,self.nu_LT]
+ [nu_21,nu_31,nu_32]=[self.nu_LR,self.nu_TR,self.nu_TL]
+ [G_12,G_31,G_23]=[self.G_LR,self.G_RT,self.G_LT]
+ self.materialParameters_phase2 =np.array([[1/E_1, -nu_21/E_2, -nu_31/E_3, 0.0, 0.0, 0.0],
+ [-nu_12/E_1, 1/E_2, -nu_32/E_3, 0.0, 0.0, 0.0],
+ [-nu_13/E_1, -nu_23/E_2, 1/E_3, 0.0, 0.0, 0.0],
+ [0.0, 0.0, 0.0, 1/G_23, 0.0, 0.0],
+ [0.0, 0.0, 0.0, 0.0, 1/G_31, 0.0],
+ [0.0, 0.0, 0.0, 0.0, 0.0, 1/G_12]]);
+ #Rotation um 2. Achse (= L)
+ self.phase2_axis = 2
+ # phase2_angle = param_theta
+ # -- Drehwinkel
+ self.phase2_angle = self.param_theta
+
+ def prestrain_phase1(self,x):
+ # hB=delta_omega * alpha with delta_omega increment of moisture content and alpha swelling factor.
+ return [[1/self.param_h*self.delta_omega*self.alpha_L, 0, 0], [0,1/self.param_h*self.delta_omega*self.alpha_R,0], [0,0,1/self.param_h*self.delta_omega*self.alpha_T]]
+
+
+
+ def prestrain_phase2(self,x):
+ return [[1/self.param_h*self.delta_omega*self.alpha_R, 0, 0], [0,1/self.param_h*self.delta_omega*self.alpha_L,0], [0,0,1/self.param_h*self.delta_omega*self.alpha_T]]
+
+
+
+ #--- define indicator function
+ # x[0] : y1-component -1/2 to 1/2
+ # x[1] : y2-component -1/2 to 1/2
+ # x[2] : x3-component range -1/2 to 1/2
+ #--- define indicator function
+ def indicatorFunction(self,x):
+ factor=1
+ if (x[2]>=(0.5-self.param_r)):
+ return 1 #Phase1
+ else :
+ return 2 #Phase2
+
+
+
+
+
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+
+
+
+
@@ -208,61 +179,40 @@ parameterSet.gamma=1.0
#############################################
# Grid parameters
#############################################
-## numLevels : Number of Levels on which solution is computed. starting with a 2x2x2 cube mesh.
-## {start,finish} computes on all grid from 2^(start) to 2^finish refinement
-#----------------------------------------------------
-# parameterSet.numLevels= '3 3' # computes all levels from first to second entry
-parameterSet.numLevels= '4 4'
+parameterSet.microGridLevel = 4
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER (default), #4: UMFPACK - SOLVER
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
-parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
+parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
+parameterSet.MaterialSubsamplingRefinement= 2
# --- Write Correctos to VTK-File:
-parameterSet.write_VTK = 0
+parameterSet.writeCorrectorsVTK = 1
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# The grid can be refined several times for a higher resolution in the VTK-file.
-parameterSet.subsamplingRefinement = 0
-
-# --- (Optional output) L2Error, integral mean:
-#parameterSet.write_L2Error = 1
-#parameterSet.write_IntegralMean = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
-# --- Write corrector-coefficients to log-File:
-#parameterSet.write_corrector_phi1 = 1
-#parameterSet.write_corrector_phi2 = 1
-#parameterSet.write_corrector_phi3 = 1
-
-# --- Print Condition number of matrix (can be expensive):
-#parameterSet.print_conditionNumber= 1 #(default=false)
-
-# --- write effective quantities to Matlab-folder for symbolic minimization:
-parameterSet.write_toMATLAB = 1 # writes effective quantities to .txt-files QMatrix.txt and BMatrix.txt
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
\ No newline at end of file
diff --git a/experiment/micro-problem/fibreRotation_microproblem.py b/experiment/micro-problem/fibreRotation_microproblem.py
new file mode 100644
index 0000000000000000000000000000000000000000..1e4505dbb90b2858d599948487daadee488f7cc0
--- /dev/null
+++ b/experiment/micro-problem/fibreRotation_microproblem.py
@@ -0,0 +1,107 @@
+import math
+import numpy as np
+
+class ParameterSet(dict):
+ def __init__(self, *args, **kwargs):
+ super(ParameterSet, self).__init__(*args, **kwargs)
+ self.__dict__ = self
+
+parameterSet = ParameterSet()
+
+""""
+ Experiment: Microstructure
+ featuring prestrained isotopic fibres located
+ in the top layer aligned diagonally with an angle alpha
+
+ theta: fibreRadius
+
+"""
+
+#############################################
+# Paths
+#############################################
+parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_buckling_microproblem'
+parameterSet.baseName= 'fibreRotation_microproblem'
+
+##################### MICROSCALE PROBLEM ####################
+class Microstructure:
+ def __init__(self):
+ # self.macroPoint = macroPoint
+ self.gamma = 2
+ self.phases = 2 #in the future this might change depending on macroPoint.
+ #--- Define different material phases:
+ #- PHASE 1
+ self.phase1_type="isotropic"
+ # self.materialParameters_phase1 = [200, 1.0]
+ self.materialParameters_phase1 = [28.7,22.5] # glass (Fibre)
+
+ #- PHASE 2
+ self.phase2_type="isotropic"
+ # self.materialParameters_phase2 = [100, 1.0]
+ self.materialParameters_phase2 = [1.2,2.58] #Matrix-material: polystyrene
+
+
+ self.theta = 0.2
+ self.alpha = 1.0471975511965976
+
+ #--- Indicator function for material phases
+ def indicatorFunction(self,x):
+ if (abs(-np.cos(self.alpha)*x[0] + np.sin(self.alpha)*x[1] ) < self.theta and x[2] >= 0 ):
+ return 1 #Phase1
+ else :
+ return 2 #Phase2
+
+ #--- Define prestrain function for each phase
+ def prestrain_phase1(self,x):
+ rho = 1.0
+ return [[rho*1.0, 0, 0], [0,rho*1.0,0], [0,0,rho*1.0]]
+
+ def prestrain_phase2(self,x):
+ return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+#############################################
+# Grid parameters
+#############################################
+parameterSet.microGridLevel = 4
+
+#############################################
+# Assembly options
+#############################################
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
+
+#############################################
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
+#############################################
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
+
+#############################################
+# Write/Output options #(default=false)
+#############################################
+# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
+parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
+#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
+parameterSet.MaterialSubsamplingRefinement= 2
+# --- Write Correctos to VTK-File:
+parameterSet.writeCorrectorsVTK = 1
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
+
+
+
diff --git a/experiment/micro-problem/material_orthotropic.py b/experiment/micro-problem/material_orthotropic.py
index be1611ca1492f21bc192282ad1f747be3ffed52c..ecb33bf4748abe64b69e193fd2d6a36abfbc1386 100644
--- a/experiment/micro-problem/material_orthotropic.py
+++ b/experiment/micro-problem/material_orthotropic.py
@@ -73,30 +73,28 @@ def prestrain_phase2(x):
def prestrain_phase3(x):
return [[0, 0, 0], [0,0,0], [0,0,0]]
-
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
#############################################
# Grid parameters
#############################################
-## numLevels : Number of Levels on which solution is computed. starting with a 2x2x2 cube mesh.
-## {start,finish} computes on all grid from 2^(start) to 2^finish refinement
-#----------------------------------------------------
-parameterSet.numLevels= '3 3' # computes all levels from first to second entry
+parameterSet.microGridLevel = 3
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER (default), #4: UMFPACK - SOLVER
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 3 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
@@ -104,30 +102,16 @@ parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for sol
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
+parameterSet.MaterialSubsamplingRefinement= 2
# --- Write Correctos to VTK-File:
-parameterSet.write_VTK = 1
-
-# The grid can be refined several times for a higher resolution in the VTK-file.
-parameterSet.subsamplingRefinement = 2
-
-# --- (Optional output) L2Error, integral mean:
-#parameterSet.write_L2Error = 1
-#parameterSet.write_IntegralMean = 1
+parameterSet.writeCorrectorsVTK = 1
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 1
-
-# --- Write corrector-coefficients to log-File:
-#parameterSet.write_corrector_phi1 = 1
-#parameterSet.write_corrector_phi2 = 1
-#parameterSet.write_corrector_phi3 = 1
-
-# --- Print Condition number of matrix (can be expensive):
-#parameterSet.print_conditionNumber= 1 #(default=false)
-
-# --- write effective quantities to Matlab-folder for symbolic minimization:
-#parameterSet.write_toMATLAB = 0 # writes effective quantities to .txt-files QMatrix.txt and BMatrix.txt
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/micro-problem/parametrized_laminate.py b/experiment/micro-problem/parametrized_laminate.py
index 7c89d3693da98d48f4862d4de5ac581907ae2dc4..318c1d8d698afd594d65e8a11bed26f75fd59cb2 100644
--- a/experiment/micro-problem/parametrized_laminate.py
+++ b/experiment/micro-problem/parametrized_laminate.py
@@ -17,7 +17,7 @@ parameterSet = ParameterSet()
theta: width of center material
theta_rho: ratio between the prestrain of the fibres.
- theta_mu: ratio between lema
+ theta_mu: ratio between lame parameters
"""
@@ -38,12 +38,10 @@ parameterSet.baseName= 'parametrized_laminate' #(needed for Output-Filename)
# theta_mu = 10.0
# mu_2 = theta_mu * mu_1;
# rho_1 = 1.0;
-# theta_rho = 10.0
+# theta_rho = 0.1
# rho_2 = rho_1*theta_rho;
-
-
class Microstructure:
def __init__(self):
# self.macroPoint = macroPoint
@@ -94,7 +92,7 @@ class Microstructure:
#--- Define prestrain function for each phase (also works with non-constant values)
def prestrain_phase1(self,x):
- theta_rho = 10.0
+ theta_rho = 0.1
return [[theta_rho*1.0, 0, 0], [0,theta_rho*1.0,0], [0,0,theta_rho*1.0]]
def prestrain_phase2(self,x):
@@ -107,25 +105,28 @@ class Microstructure:
return [[0, 0, 0], [0,0,0], [0,0,0]]
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
#############################################
# Grid parameters
#############################################
-parameterSet.microGridLevel = 3
+parameterSet.microGridLevel = 2
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
@@ -134,23 +135,15 @@ parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for sol
parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-
-parameterSet.write_EffectiveQuantitiesToTxt= True
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
# --- write effective quantities (Qhom.Beff) to .txt-files
-parameterSet.write_EffectiveQuantitiesToTxt = True
\ No newline at end of file
+parameterSet.write_EffectiveQuantitiesToTxt = True
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
\ No newline at end of file
diff --git a/experiment/micro-problem/prestrainedFibre.py b/experiment/micro-problem/prestrainedFibre.py
index 8b4d90d0ffc0072e02de0fd3b4b073e8535d64d0..477bf3c54e8346e8a112f4dca4fda0d2b6da07ba 100644
--- a/experiment/micro-problem/prestrainedFibre.py
+++ b/experiment/micro-problem/prestrainedFibre.py
@@ -22,6 +22,8 @@ parameterSet = ParameterSet()
parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_prestrainedFibre'
parameterSet.baseName= 'prestrainedFibre'
+
+
##################### MICROSCALE PROBLEM ####################
class Microstructure:
def __init__(self):
@@ -30,15 +32,23 @@ class Microstructure:
#--- Define different material phases:
#- PHASE 1
self.phase1_type="isotropic"
- mu_phase1 = 100
- self.materialParameters_phase1 = [mu_phase1, 1.0]
+ mu_phase1 = 1.5
+ # mu_phase1 = 1.5
+ # lambda_phase1 = 100
+
+ # self.materialParameters_phase1 = [mu_phase1, 1.0]
# self.materialParameters_phase1 = [63.89, 0.2] #carbon fibre
+ # self.materialParameters_phase1 = [mu_phase1, 54] #aluminium
+ # self.materialParameters_phase1 = [1.2, lambda_phase1] #aluminium
+ self.materialParameters_phase1 = [mu_phase1,2.58] #Matrix-material: polystyrene
# #- PHASE 2
self.phase2_type="isotropic"
- self.materialParameters_phase2 = [100.0, 1.0]
+ # self.materialParameters_phase2 = [100.0, 1.0]
# self.materialParameters_phase2 = [1.48, 0.26] #epoxy resin
+ # self.materialParameters_phase2 = [27.8, 54] #aluminium
+ self.materialParameters_phase2 = [1.2,2.58] #Matrix-material: polystyrene
def indicatorFunction(self,x):
verticalMidpointPosition = 0.25
@@ -61,26 +71,28 @@ class Microstructure:
return [[0, 0, 0], [0,0,0], [0,0,0]]
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
#############################################
# Grid parameters
#############################################
-parameterSet.microGridLevel = 4
+parameterSet.microGridLevel = 3
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
@@ -89,23 +101,17 @@ parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for sol
parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
# --- write effective quantities (Qhom.Beff) to .txt-files
parameterSet.write_EffectiveQuantitiesToTxt = True
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/micro-problem/prestrainedFibre_anisotropicB.py b/experiment/micro-problem/prestrainedFibre_anisotropicB.py
index 1c06a934d7e74c69ea66ed1dbfd8b0eb1fdf6cdd..8e196b70d7230126cd20456bbf7c8fb5d20abb2b 100644
--- a/experiment/micro-problem/prestrainedFibre_anisotropicB.py
+++ b/experiment/micro-problem/prestrainedFibre_anisotropicB.py
@@ -30,15 +30,17 @@ class Microstructure:
#--- Define different material phases:
#- PHASE 1
self.phase1_type="isotropic"
- mu_phase1 = 100
+ # mu_phase1 = 100
- self.materialParameters_phase1 = [mu_phase1, 1.0]
+ # self.materialParameters_phase1 = [mu_phase1, 1.0]
# self.materialParameters_phase1 = [63.89, 0.2] #carbon fibre
+ self.materialParameters_phase1 = [1.2,2.58] #(Matrix-material: polystyrene
# #- PHASE 2
self.phase2_type="isotropic"
- self.materialParameters_phase2 = [100.0, 1.0]
+ # self.materialParameters_phase2 = [100.0, 1.0]
# self.materialParameters_phase2 = [1.48, 0.26] #epoxy resin
+ self.materialParameters_phase2 = [1.2,2.58] #(Matrix-material: polystyrene
def indicatorFunction(self,x):
verticalMidpointPosition = 0.25
@@ -55,12 +57,12 @@ class Microstructure:
#--- Define prestrain function for each phase (also works with non-constant values)
def prestrain_phase1(self,x):
rho = 1.0
- return [[rho*1.0, -2.0, 0], [-2.0,rho*1.0,0], [0,0,rho*1.0]]
+ return [[rho*1.0, 2.0, 0], [2.0,rho*1.0,0], [0,0,rho*1.0]]
def prestrain_phase2(self,x):
return [[0, 0, 0], [0,0,0], [0,0,0]]
-
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
#############################################
# Grid parameters
@@ -70,17 +72,18 @@ parameterSet.microGridLevel = 4
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
@@ -89,23 +92,17 @@ parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for sol
parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
# --- write effective quantities (Qhom.Beff) to .txt-files
parameterSet.write_EffectiveQuantitiesToTxt = True
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/micro-problem/prestrainedFibre_anisotropicQ.py b/experiment/micro-problem/prestrainedFibre_anisotropicQ.py
index 19cf8026ea80a9652b95f8bc5ede46c13115cd1b..f540a9c49edc00ca08e74595498c3f45bf645fc3 100644
--- a/experiment/micro-problem/prestrainedFibre_anisotropicQ.py
+++ b/experiment/micro-problem/prestrainedFibre_anisotropicQ.py
@@ -29,9 +29,11 @@ class Microstructure:
self.phases = 2 #in the future this might change depending on macroPoint.
#--- Define different material phases:
#- PHASE 1
- # self.phase1_type="isotropic"
+ self.phase1_type="isotropic"
# mu_phase1 = 100
+ # self.materialParameters_phase1 = [1.2, 2.58] #epoxy resin
+
# self.materialParameters_phase1 = [mu_phase1, 1.0]
self.phase1_type="general_anisotropic"
@@ -63,12 +65,39 @@ class Microstructure:
# [0.0, 0.0, 0.0, 0.0, 0.0, 5]]);
- self.materialParameters_phase1 =np.array([ [ 9.13e-01, -5.45e-03, -2.62e-01, 0.00e+00, 0.00e+00, 0.00e+00],
- [-5.45e-03, -1.29e-04, -1.30e-02, -0.00e+00, -0.00e+00, -0.00e+00],
- [-2.62e-01, -1.30e-02, -7.31e-01, -0.00e+00, -0.00e+00, -0.00e+00],
- [ 0.00e+00, 0.00e+00, 0.00e+00, 1.00e+00, 0.00e+00, 0.00e+00],
- [ 0.00e+00, 0.00e+00, 0.00e+00, 0.00e+00, 1.00e-04, 0.00e+00],
- [ 0.00e+00, 0.00e+00, 0.00e+00, 0.00e+00, 0.00e+00, 2.00e-01]])
+ # self.materialParameters_phase1 =np.array([ [ 9.13e-01, -5.45e-03, -2.62e-01, 0.00e+00, 0.00e+00, 0.00e+00],
+ # [-5.45e-03, -1.29e-04, -1.30e-02, -0.00e+00, -0.00e+00, -0.00e+00],
+ # [-2.62e-01, -1.30e-02, -7.31e-01, -0.00e+00, -0.00e+00, -0.00e+00],
+ # [ 0.00e+00, 0.00e+00, 0.00e+00, 1.00e+00, 0.00e+00, 0.00e+00],
+ # [ 0.00e+00, 0.00e+00, 0.00e+00, 0.00e+00, 1.00e-04, 0.00e+00],
+ # [ 0.00e+00, 0.00e+00, 0.00e+00, 0.00e+00, 0.00e+00, 2.00e-01]])
+
+ # self.materialParameters_phase1 =np.array([[ 4.98e-04, -2.08e-05, -4.26e-04, 0.00e+00, 0.00e+00, 0.00e+00],
+ # [-2.08e-05, 6.90e-05, -1.74e-05, 0.00e+00, 0.00e+00, 0.00e+00],
+ # [-4.26e-04, -1.74e-05, 1.50e-03, 0.00e+00, 0.00e+00, 0.00e+00],
+ # [ 0.00e+00, 0.00e+00, 0.00e+00, 1.07e-03, 0.00e+00, 0.00e+00],
+ # [ 0.00e+00, 0.00e+00, 0.00e+00, 0.00e+00, 1.90e-03, 0.00e+00],
+ # [ 0.00e+00, 0.00e+00, 0.00e+00, 0.00e+00, 0.00e+00, 7.47e-04]])
+
+
+
+ # WOOD_European_BEECH (rotated np.pi/4.0) - # Dataset Ratio r = 0.49 with parameters [0.49, 0.008, 17.01520754, 15.30614414, np.pi/4.0, 0.357615902],
+ # self.materialParameters_phase1 =np.array([[ 3.18e-04, -5.53e-05, -2.22e-04, 0.00e+00, 0.00e+00, 2.15e-04],
+ # [-5.53e-05, 3.18e-04, -2.22e-04, 0.00e+00, 0.00e+00, 2.15e-04],
+ # [-2.22e-04, -2.22e-04, 1.50e-03, 0.00e+00, 0.00e+00, -4.08e-04],
+ # [ 0.00e+00, 0.00e+00, 0.00e+00, 1.49e-03, 4.16e-04, 0.00e+00],
+ # [ 0.00e+00, 0.00e+00, 0.00e+00, 4.16e-04, 1.49e-03, 0.00e+00],
+ # [ 2.15e-04, 2.15e-04, -4.08e-04, 0.00e+00, 0.00e+00, 6.09e-04]])
+ # WOOD_European_BEECH (rotated np.pi/4.0) Dataset (RotatedLayer) [0.12, 0.0047, 17.32986047, 9.005046347, np.pi/4.0, 4.312080261]
+ self.materialParameters_phase1 =np.array([
+ [ 3.16e-04, -5.60e-05, -2.19e-04, 0.00e+00, 0.00e+00, 2.12e-04],
+ [-5.60e-05, 3.16e-04, -2.19e-04, 0.00e+00, 0.00e+00, 2.12e-04],
+ [-2.19e-04, -2.19e-04, 1.48e-03, 0.00e+00, 0.00e+00, -4.04e-04],
+ [ 0.00e+00, 0.00e+00, 0.00e+00, 1.47e-03, 4.10e-04, 0.00e+00],
+ [ 0.00e+00, 0.00e+00, 0.00e+00, 4.10e-04, 1.47e-03, 0.00e+00],
+ [ 2.12e-04, 2.12e-04, -4.04e-04, 0.00e+00, 0.00e+00, 6.03e-04]])
+
+
# self.materialParameters_phase1 =np.array([[ 2.80e-01, -2.26e-02, -9.18e-03, 0.00e+00, 0.00e+00, 0.00e+00],
# [-2.26e-02, 2.83e-03, 1.37e-03, -0.00e+00, -0.00e+00, -0.00e+00],
@@ -124,8 +153,9 @@ class Microstructure:
# #- PHASE 2
self.phase2_type="isotropic"
- self.materialParameters_phase2 = [100.0, 1.0]
+ # self.materialParameters_phase2 = [100.0, 1.0]
# self.materialParameters_phase2 = [1.48, 0.26] #epoxy resin
+ self.materialParameters_phase2 = [1.2,2.58] #(Matrix-material: polystyrene
def indicatorFunction(self,x):
verticalMidpointPosition = 0.25
@@ -141,13 +171,13 @@ class Microstructure:
#--- Define prestrain function for each phase (also works with non-constant values)
def prestrain_phase1(self,x):
- rho = 1.0
+ rho = 5.0
return [[rho*1.0, 0.0, 0], [0.0,rho*1.0,0], [0,0,rho*1.0]]
def prestrain_phase2(self,x):
return [[0, 0, 0], [0,0,0], [0,0,0]]
-
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
#############################################
# Grid parameters
@@ -157,17 +187,18 @@ parameterSet.microGridLevel = 4
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
@@ -176,23 +207,17 @@ parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for sol
parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
# --- write effective quantities (Qhom.Beff) to .txt-files
parameterSet.write_EffectiveQuantitiesToTxt = True
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/experiment/micro-problem/three-phase-composite.py b/experiment/micro-problem/three-phase-composite.py
index ddf57e8b949e309ca0edd54b80a6fe96f287e58b..ad3329487fc2de407371ae554ac6afcb4759480e 100644
--- a/experiment/micro-problem/three-phase-composite.py
+++ b/experiment/micro-problem/three-phase-composite.py
@@ -28,22 +28,31 @@ parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/
parameterSet.baseName= 'thee-phase-composite'
##################### MICROSCALE PROBLEM ####################
-
class Microstructure:
def __init__(self):
self.gamma = 1.0 #in the future this might change depending on macroPoint.
self.phases = 3 #in the future this might change depending on macroPoint.
#--- Define different material phases:
+ # #- PHASE 1
+ # self.phase1_type="isotropic"
+ # self.materialParameters_phase1 = [200, 1.0]
+ # #- PHASE 2
+ # self.phase2_type="isotropic"
+ # self.materialParameters_phase2 = [200, 1.0]
+ # #- PHASE 3
+ # self.phase3_type="isotropic"
+ # self.materialParameters_phase3 = [100, 1.0] #(Matrix-material)
+
#- PHASE 1
self.phase1_type="isotropic"
- self.materialParameters_phase1 = [200, 1.0]
+ self.materialParameters_phase1 = [28.7,22.5] # glass
#- PHASE 2
self.phase2_type="isotropic"
- self.materialParameters_phase2 = [200, 1.0]
+ self.materialParameters_phase2 = [28.7,22.5] # glass
#- PHASE 3
self.phase3_type="isotropic"
- self.materialParameters_phase3 = [100, 1.0] #(Matrix-material)
+ self.materialParameters_phase3 = [1.2,2.58] #(Matrix-material: polystyrene
# self.materialParameters_phase3 = [100, 0.1] #(Matrix-material)
#--- Three-phase composite phase indicator
@@ -87,17 +96,21 @@ class Microstructure:
# prestrained fibre in top layer , e2-aligned
def prestrain_phase1(self,x):
return [[1.0, 0, 0], [0,1.0,0], [0,0,1.0]]
+ # return [[0.5, 0, 0], [0,0.5,0], [0,0,0.5]]
# prestrained fibre in bottom layer , e1-aligned
def prestrain_phase2(self,x):
#prestrain ratio
- rho = 1.0
+ rho = 0.95
return [[rho*1.0, 0, 0], [0,rho*1.0,0], [0,0,rho*1.0]]
# no prestrain in matrix-material
def prestrain_phase3(self,x):
return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
#############################################
# Grid parameters
#############################################
@@ -106,17 +119,18 @@ parameterSet.microGridLevel = 3
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER, #4: UMFPACK - SOLVER (default)
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 4 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
@@ -125,20 +139,15 @@ parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for sol
parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
parameterSet.MaterialSubsamplingRefinement= 2
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
-parameterSet.print_corrector_matrices = 0
-
# --- Write Correctos to VTK-File:
parameterSet.writeCorrectorsVTK = 1
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 0
-
# --- write effective quantities (Qhom.Beff) to .txt-files
parameterSet.write_EffectiveQuantitiesToTxt = True
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
\ No newline at end of file
diff --git a/experiment/micro-problem/validation_microproblem.py b/experiment/micro-problem/validation_microproblem.py
new file mode 100644
index 0000000000000000000000000000000000000000..ffd02657c827bab479ee74e2746d7ad6ef7cd128
--- /dev/null
+++ b/experiment/micro-problem/validation_microproblem.py
@@ -0,0 +1,142 @@
+import math
+
+class ParameterSet(dict):
+ def __init__(self, *args, **kwargs):
+ super(ParameterSet, self).__init__(*args, **kwargs)
+ self.__dict__ = self
+
+parameterSet = ParameterSet()
+
+
+""""
+ This is just a dummy parameterFile - we actually only use it to create to appropriate folders automatically
+ and adjust the 'QMatrix' and 'BMatrix' .txt files to plot the energy landscape.
+
+"""
+
+#############################################
+# Paths
+#############################################
+parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_validation_microproblem'
+parameterSet.baseName= 'validation_microproblem' #(needed for Output-Filename)
+
+#############################################
+# Material Setup
+#############################################
+
+
+#Parameters used for analytical solutions:
+# theta = 0.5
+# mu_1 = 1.0;
+# theta_mu = 10.0
+# mu_2 = theta_mu * mu_1;
+# rho_1 = 1.0;
+# theta_rho = 0.1
+# rho_2 = rho_1*theta_rho;
+
+
+class Microstructure:
+ def __init__(self):
+ # self.macroPoint = macroPoint
+ self.gamma = 1.0 #in the future this might change depending on macroPoint.
+ self.phases = 4 #in the future this might change depending on macroPoint.
+ #--- Define different material phases:
+
+ # ########### Options for material phases: #################################
+ # # 1. "isotropic" 2. "orthotropic" 3. "transversely_isotropic" 4. "general_anisotropic"
+ # #########################################################################
+ # ## Notation - Parameter input :
+ # # isotropic (Lame parameters) : [mu , lambda]
+ # # orthotropic : [E1,E2,E3,G12,G23,G31,nu12,nu13,nu23] # see https://en.wikipedia.org/wiki/Poisson%27s_ratio with x=1,y=2,z=3
+ # # transversely_isotropic : [E1,E2,G12,nu12,nu23]
+ # # general_anisotropic : full compliance matrix C
+ # ######################################################################
+
+ # theta_mu = 10.0
+ theta_mu = 2.0
+ #- PHASE 1
+ self.phase1_type="isotropic"
+ self.materialParameters_phase1 = [theta_mu*1.0, 0]
+ #- PHASE 2
+ self.phase2_type="isotropic"
+ self.materialParameters_phase2 = [1.0, 0]
+ #- PHASE 3
+ self.phase3_type="isotropic"
+ self.materialParameters_phase3 = [theta_mu*1.0, 0]
+ #- PHASE 4
+ self.phase4_type="isotropic"
+ self.materialParameters_phase4 = [1.0, 0]
+
+
+
+ #--- Indicator function for material phases
+ def indicatorFunction(self,x):
+ theta = 0.5
+ if (abs(x[0]) < (theta/2) and x[2] < 0 ):
+ return 1 #Phase1
+ elif (abs(x[0]) > (theta/2) and x[2] > 0 ):
+ return 2 #Phase2
+ elif (abs(x[0]) < (theta/2) and x[2] > 0 ):
+ return 3 #Phase3
+ else :
+ return 4 #Phase4
+
+
+
+ #--- Define prestrain function for each phase (also works with non-constant values)
+ def prestrain_phase1(self,x):
+ theta_rho = 0.1
+ return [[theta_rho*1.0, 0, 0], [0,theta_rho*1.0,0], [0,0,theta_rho*1.0]]
+
+ def prestrain_phase2(self,x):
+ return [[1, 0, 0], [0,1,0], [0,0,1]]
+
+ def prestrain_phase3(self,x):
+ return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+ def prestrain_phase4(self,x):
+ return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+#############################################
+# Grid parameters
+#############################################
+parameterSet.microGridLevel = 2
+
+#############################################
+# Assembly options
+#############################################
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
+
+#############################################
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
+#############################################
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
+
+#############################################
+# Write/Output options #(default=false)
+#############################################
+# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
+parameterSet.write_materialFunctions = 1 # VTK indicator function for material/prestrain definition
+#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
+parameterSet.MaterialSubsamplingRefinement= 2
+# --- Write Correctos to VTK-File:
+parameterSet.writeCorrectorsVTK = 1
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
\ No newline at end of file
diff --git a/macroSim_Container/Containerfile b/macroSim_Container/Containerfile
index 75097aa8a7bb9479ebffeb34bb0daf41f8022d77..d2a09602ff75fea104dd664daae5f804ed2bf860 100644
--- a/macroSim_Container/Containerfile
+++ b/macroSim_Container/Containerfile
@@ -26,8 +26,8 @@ RUN apt-get update && apt-get install -y ssh rsh-client && apt-get install -y li
libmetis-dev \
# libopenblas-base \ #causes problem with Suitesparse!
# libopenblas-dev \
- # intel-mkl \
- # intel-mkl-cluster \
+ intel-mkl \
+ intel-mkl-cluster \
liblapack-dev \
libparmetis-dev \
libsuitesparse-dev \
@@ -66,33 +66,36 @@ RUN \
&& git clone https://gitlab.dune-project.org/core/dune-grid.git \
&& git clone https://gitlab.dune-project.org/core/dune-istl.git \
&& git clone https://gitlab.dune-project.org/core/dune-localfunctions.git \
- # && git clone https://gitlab.dune-project.org/staging/dune-functions.git --branch bugfix/reducedcubichermite-local \
- && git clone https://gitlab.dune-project.org/klaus.boehnlein/dune-functions.git --branch bugfix/reducedcubichermite-local \
+ # && git clone https://gitlab.dune-project.org/klaus.boehnlein/dune-functions.git --branch bugfix/reducedcubichermite-local \
+ && git clone https://gitlab.dune-project.org/staging/dune-functions \
&& git clone https://gitlab.dune-project.org/staging/dune-uggrid.git \
&& git clone https://gitlab.dune-project.org/staging/dune-typetree.git \
&& git clone https://gitlab.dune-project.org/fufem/dune-matrix-vector.git \
- && git clone https://gitlab.dune-project.org/fufem/dune-fufem.git --branch releases/2.9 \
+ && git clone https://gitlab.dune-project.org/fufem/dune-fufem.git \
+ # && git clone https://gitlab.dune-project.org/fufem/dune-fufem.git --branch releases/2.9 \
# && git clone https://gitlab.dune-project.org/extensions/dune-vtk.git --branch releases/2.9 \
&& git clone https://gitlab.dune-project.org/extensions/dune-vtk.git \
&& git clone https://git.imp.fu-berlin.de/agnumpde/dune-solvers.git \
- && git clone https://gitlab.mn.tu-dresden.de/iwr/dune-gmsh4.git --branch releases/2.9 \
- && git clone https://gitlab.mn.tu-dresden.de/ag-sander/dune/dune-elasticity.git --branch releases/2.9 \
- && git clone https://gitlab.mn.tu-dresden.de/osander/dune-gfe.git --branch feature/bendingIsometries \
- && git clone https://gitlab.mn.tu-dresden.de/s7603593/dune-microstructure.git
+ # && git clone https://gitlab.mn.tu-dresden.de/iwr/dune-gmsh4.git --branch releases/2.9 \
+ && git clone https://gitlab.mn.tu-dresden.de/iwr/dune-gmsh4.git \
+ # && git clone https://gitlab.mn.tu-dresden.de/ag-sander/dune/dune-elasticity.git --branch releases/2.9 \
+ # && git clone https://gitlab.mn.tu-dresden.de/osander/dune-gfe.git --branch feature/bendingIsometries \
+ && git clone https://gitlab.mn.tu-dresden.de/osander/dune-gfe.git --branch feature/ARRN-mod \
+ && git clone https://gitlab.mn.tu-dresden.de/s7603593/dune-microstructure.git --branch feature/newHermiteBasis
# For the sake of reproducibility:
# Set HEAD to particular commits wherever we are not using release branches.
-RUN cd dune-common && git checkout faaf4e7fffbd25b872380d3307f4f7fa886773ea
-RUN cd dune-geometry && git checkout 1a4f504d95f1a5ccb46b380c316da421b770c091
-RUN cd dune-grid && git checkout 17b91684cff69b2e10c52f922434b61888a9ecf7
-RUN cd dune-istl && git checkout 28997ea7ddd6b1be1ecaefa04c7813dfa7df213f
-RUN cd dune-localfunctions && git checkout 8f1cb33575204e5a245e9e6088e7a6471d3903a9
-RUN cd dune-uggrid && git checkout 68094a7154287db0b10ffe07667d175cdd3eacff
-RUN cd dune-typetree && git checkout d3345d13804d9b6a26973272d799ca345abfd49c
-RUN cd dune-matrix-vector && git checkout c073d2a0d8feb3de23a48668219895ffcfb7e53c
-RUN cd dune-solvers && git checkout 532830e4051f14bae06127e0ca6373519d65601a
-RUN cd dune-vtk && git checkout 98be9d9ad314e0b51647912c2755e03a2ca32ca6
-RUN cd dune-microstructure && git checkout 0c4ebef7f7bea724ab7a602fb8d3619246bfa06b
+# RUN cd dune-common && git checkout faaf4e7fffbd25b872380d3307f4f7fa886773ea
+# RUN cd dune-geometry && git checkout 1a4f504d95f1a5ccb46b380c316da421b770c091
+# RUN cd dune-grid && git checkout 17b91684cff69b2e10c52f922434b61888a9ecf7
+# RUN cd dune-istl && git checkout 28997ea7ddd6b1be1ecaefa04c7813dfa7df213f
+# RUN cd dune-localfunctions && git checkout 8f1cb33575204e5a245e9e6088e7a6471d3903a9
+# RUN cd dune-uggrid && git checkout 68094a7154287db0b10ffe07667d175cdd3eacff
+# RUN cd dune-typetree && git checkout d3345d13804d9b6a26973272d799ca345abfd49c
+# RUN cd dune-matrix-vector && git checkout c073d2a0d8feb3de23a48668219895ffcfb7e53c
+# RUN cd dune-solvers && git checkout 532830e4051f14bae06127e0ca6373519d65601a
+# RUN cd dune-vtk && git checkout 98be9d9ad314e0b51647912c2755e03a2ca32ca6
+# RUN cd dune-microstructure && git checkout 0c4ebef7f7bea724ab7a602fb8d3619246bfa06b
# RUN cd dune-microstructure && git checkout fb8326aadfeabd6e8c4cb2022c8f228479b420ef
diff --git a/macroSim_Container/build_SingularityContainer.sh b/macroSim_Container/build_SingularityContainer.sh
index d520ab9b8fda9b3152bd8cc951bf5e2d9e268f5d..3be0b975845a0ef54785b735649220daba49a158 100755
--- a/macroSim_Container/build_SingularityContainer.sh
+++ b/macroSim_Container/build_SingularityContainer.sh
@@ -37,14 +37,14 @@ singularity build macrosim_container.sif docker-archive://macrosim_image.tar
# ./macrosim_container.sif python3 /dune/dune-microstructure/microstructure_testsuite/macro-problem-testsuite.py 1 #EXPERIMENT_id
-# (Optional) Move Container to Barnard.
-echo "Move to Barnard(HPC) ? "
+# # (Optional) Move Container to Barnard.
+# echo "Move to Barnard(HPC) ? "
-read HPC_flag
+# read HPC_flag
-if [ "$HPC_flag" == "true" ] || [ $HPC_flag -eq 1 ] || [ "$HPC_flag" == "yes" ]
-then
- echo "Moving to Barnard..."
- rsync macrosim_container.sif s7603593@dataport1.hpc.tu-dresden.de:/data/horse/ws/s7603593-microstructure
- rsync macrosim.batch s7603593@dataport1.hpc.tu-dresden.de:/data/horse/ws/s7603593-microstructure
-fi
\ No newline at end of file
+# if [ "$HPC_flag" == "true" ] || [ $HPC_flag -eq 1 ] || [ "$HPC_flag" == "yes" ]
+# then
+# echo "Moving to Barnard..."
+# rsync macrosim_container.sif s7603593@dataport1.hpc.tu-dresden.de:/data/horse/ws/s7603593-microstructure
+# rsync macrosim.batch s7603593@dataport1.hpc.tu-dresden.de:/data/horse/ws/s7603593-microstructure
+# fi
\ No newline at end of file
diff --git a/macroSim_Container/getBarnardResults.sh b/macroSim_Container/getBarnardResults.sh
new file mode 100755
index 0000000000000000000000000000000000000000..cf58afbe0a4ad8381cca8dbfcc082a64212f4318
--- /dev/null
+++ b/macroSim_Container/getBarnardResults.sh
@@ -0,0 +1,3 @@
+echo "get results from Barnard ... "
+echo "directory to store results: " $(pwd)
+rsync -r s7603593@dataport1.hpc.tu-dresden.de:/home/s7603593/* $(pwd)
\ No newline at end of file
diff --git a/macroSim_Container/get_from_barnard.sh b/macroSim_Container/get_from_barnard.sh
deleted file mode 100644
index eecc342a5039e52d10dbc309b8d5c0476d8fa0a3..0000000000000000000000000000000000000000
--- a/macroSim_Container/get_from_barnard.sh
+++ /dev/null
@@ -1,44 +0,0 @@
-# build with "chmod +x build_SingularityContainer.sh"
-# run via "./build_SingularityContainer.sh"
-
-# Define your local path for simulation results and figures
-echo "Define output path on your host machine: "
-# LOCALPATH='/home/klaus/Desktop/test'
-read LOCALPATH
-
-IMAGE_NAME = macrosim_image
-CONTAINER_NAME = macrosim_container
-echo "IMAGE_NAME: $IMAGE_NAME"
-
-# docker build --no-cache=true -t macrosim_image -f Containerfile .
-docker build --no-cache=true -t IMAGE_NAME -f Containerfile .
-
-# docker rm macrosim_container
-
-image_id=$(docker images --quiet | head -1)
-
-echo "image ID used: $image_id"
-
-# Save docker image in .tar-file
-# docker save $image_id -o macrosim_image.tar
-docker save $image_id -o IMAGE_NAME.tar
-
-# Convert docker .tar-file to singularity container
-# singularity build macrosim_container.sif docker-archive://macrosim_image.tar
-singularity build CONTAINER_NAME.sif docker-archive://IMAGE_NAME.tar
-
-#Run Singularity Container via:
-# ./macrosim_container.sif python3 /dune/dune-microstructure/microstructure_testsuite/macro-problem-testsuite.py 1 #EXPERIMENT_id
-
-
-# (Optional) Move Container to Barnard.
-echo "Move to Barnard(HPC) ? "
-
-read HPC_flag
-
-if [ "$HPC_flag" == "true" ] || [ $HPC_flag -eq 1 ] || [ "$HPC_flag" == "yes" ]
-then
- echo "Moving to Barnard..."
- rsync CONTAINER_NAME.sif s7603593@dataport1.hpc.tu-dresden.de:/data/horse/ws/s7603593-microstructure
- rsync macrosim.batch s7603593@dataport1.hpc.tu-dresden.de:/data/horse/ws/s7603593-microstructure
-fi
\ No newline at end of file
diff --git a/macroSim_Container/macrosim.batch b/macroSim_Container/macrosim.batch
index 8ffe52a9c3cb5c47a6226e354943d3839c3cbdca..5f06f48296512f808ea0bedf43f014b633684cca 100644
--- a/macroSim_Container/macrosim.batch
+++ b/macroSim_Container/macrosim.batch
@@ -5,12 +5,11 @@
#SBATCH --job-name=macro-problem
#SBATCH --nodes=1
#SBATCH --ntasks=1
-#SBATCH --time=1:00:00
-#SBATCH --exclusive # ensure that nobody spoils my measurement
+#SBATCH --time=72:00:00
#SBATCH --comment=no_monitoring
-#SBATCH --chdir=/data/horse/ws/s7603593-microstructure/experiments
+#SBATCH --chdir=/data/horse/ws/s7603593-microstructure
#SBATCH --output=macro-problem-log_%a.txt
#SBATCH --error=simulation-%a.err
-#SBATCH --array=0-1
+#SBATCH --array=0-5
./macrosim_container.sif python3 /dune/dune-microstructure/testsuite/macro-problem-testsuite.py 1 $SLURM_ARRAY_TASK_ID
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 22120f5558336c143b90180c9b18f1832701e30d..1528e2f5e6dec56e83a57ed0c55d6b637d345893 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1,21 +1,18 @@
-#add_executable("dune-microstructure" dune-microstructure.cc)
-#target_link_dune_default_libraries("dune-microstructure")
-#set(CMAKE_BUILD_TYPE Debug)#
-
-
set(programs Cell-Problem
- micro-problem
- macro-problem)
-
+ micro-problem)
foreach(_program ${programs})
add_executable(${_program} ${_program}.cc)
- target_link_dune_default_libraries(${_program})
- add_dune_pythonlibs_flags(${_program})
- target_link_libraries(${_program})
-# target_link_libraries(${_program} tinyxml2)
-# target_compile_options(${_program} PRIVATE "-fpermissive")
endforeach()
+
+if(dune-functions_VERSION VERSION_GREATER_EQUAL 2.11.0)
+ add_executable("macro-problem" macro-problem.cc)
+ set(programs macro-problem ${programs})
+endif()
-# set(CMAKE_BUILD_TYPE Debug)
+foreach(_program ${programs})
+ target_link_dune_default_libraries(${_program})
+ add_dune_pythonlibs_flags(${_program})
+ target_link_libraries(${_program} PUBLIC tinyxml2)
+endforeach()
\ No newline at end of file
diff --git a/src/Cell-Problem.cc b/src/Cell-Problem.cc
index 68946e5526256a437a2ce22f5a1b3d168e144d4b..9e7670004e88063f3251e53eafa9ec5605eea0d9 100644
--- a/src/Cell-Problem.cc
+++ b/src/Cell-Problem.cc
@@ -12,7 +12,7 @@
#include <dune/common/float_cmp.hh>
#include <dune/common/math.hh>
#include <dune/common/fvector.hh>
-#include <dune/common/fmatrix.hh>
+#include <dune/common/fmatrix.hh>
#include <dune/geometry/quadraturerules.hh>
@@ -29,7 +29,7 @@
#include <dune/istl/spqr.hh>
#include <dune/istl/preconditioners.hh>
#include <dune/istl/io.hh>
-#include <dune/istl/eigenvalue/test/matrixinfo.hh> // TEST: compute condition Number
+#include <dune/istl/eigenvalue/test/matrixinfo.hh> // TEST: compute condition Number
#include <dune/functions/functionspacebases/interpolate.hh>
#include <dune/functions/backends/istlvectorbackend.hh>
@@ -45,11 +45,11 @@
#include <dune/fufem/dunepython.hh>
#include <dune/microstructure/matrix_operations.hh>
-#include <dune/microstructure/CorrectorComputer.hh>
-#include <dune/microstructure/EffectiveQuantitiesComputer.hh>
-#include <dune/microstructure/prestrainedMaterial.hh>
+#include <dune/microstructure/CorrectorComputer.hh>
+#include <dune/microstructure/EffectiveQuantitiesComputer.hh>
+#include <dune/microstructure/prestrainedMaterial.hh>
-#include <dune/solvers/solvers/umfpacksolver.hh> //TEST
+#include <dune/solvers/solvers/umfpacksolver.hh> //TEST
#include <any>
#include <variant>
@@ -60,7 +60,7 @@ using namespace Dune;
using namespace MatrixOperations;
-using GridView = Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, 3>>::LeafGridView;
+using GridView = Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, 3> >::LeafGridView;
//////////////////////////////////////////////////////////////////////
// Helper functions for Table-Output
@@ -68,28 +68,28 @@ using GridView = Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, 3>
/*! Center-aligns string within a field of width w. Pads with blank spaces
to enforce alignment. */
std::string center(const std::string s, const int w) {
- std::stringstream ss, spaces;
- int padding = w - s.size(); // count excess room to pad
- for(int i=0; i<padding/2; ++i)
- spaces << " ";
- ss << spaces.str() << s << spaces.str(); // format with padding
- if(padding>0 && padding%2!=0) // if odd #, add 1 space
- ss << " ";
- return ss.str();
+ std::stringstream ss, spaces;
+ int padding = w - s.size(); // count excess room to pad
+ for(int i=0; i<padding/2; ++i)
+ spaces << " ";
+ ss << spaces.str() << s << spaces.str(); // format with padding
+ if(padding>0 && padding%2!=0) // if odd #, add 1 space
+ ss << " ";
+ return ss.str();
}
/* Convert double to string with specified number of places after the decimal
and left padding. */
template<class type>
std::string prd(const type x, const int decDigits, const int width) {
- std::stringstream ss;
-// ss << std::fixed << std::right;
- ss << std::scientific << std::right; // Use scientific Output!
- ss.fill(' '); // fill space around displayed #
- ss.width(width); // set width around displayed #
- ss.precision(decDigits); // set # places after decimal
- ss << x;
- return ss.str();
+ std::stringstream ss;
+ // ss << std::fixed << std::right;
+ ss << std::scientific << std::right; // Use scientific Output!
+ ss.fill(' '); // fill space around displayed #
+ ss.width(width); // set width around displayed #
+ ss.precision(decDigits); // set # places after decimal
+ ss << x;
+ return ss.str();
}
/**
@@ -97,12 +97,12 @@ std::string prd(const type x, const int decDigits, const int width) {
* Check whether two points are equal on R/Z x R/Z x R
*/
auto equivalent = [](const FieldVector<double,3>& x, const FieldVector<double,3>& y)
- {
+ {
return ( (FloatCmp::eq(x[0],y[0]) or FloatCmp::eq(x[0]+1,y[0]) or FloatCmp::eq(x[0]-1,y[0]))
- and (FloatCmp::eq(x[1],y[1]) or FloatCmp::eq(x[1]+1,y[1]) or FloatCmp::eq(x[1]-1,y[1]))
- and (FloatCmp::eq(x[2],y[2]))
- );
- };
+ and (FloatCmp::eq(x[1],y[1]) or FloatCmp::eq(x[1]+1,y[1]) or FloatCmp::eq(x[1]-1,y[1]))
+ and (FloatCmp::eq(x[2],y[2]))
+ );
+ };
@@ -110,30 +110,30 @@ auto equivalent = [](const FieldVector<double,3>& x, const FieldVector<double,3>
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
int main(int argc, char *argv[])
{
- feenableexcept(FE_INVALID);
- MPIHelper::instance(argc, argv);
-
- Dune::Timer globalTimer;
-
- if (argc < 3)
- DUNE_THROW(Exception, "Usage: ./Cell-Problem <python path> <python module without extension>");
-
- // Start Python interpreter
- Python::start();
- auto pyMain = Python::main();
- pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << argv[1] << "')" << std::endl;
- auto pyModule = pyMain.import(argv[2]);
-
- ParameterTree parameterSet;
- pyModule.get("parameterSet").toC(parameterSet);
- // read possible further parameters from the command line
- ParameterTreeParser::readOptions(argc, argv, parameterSet);
- // Print all parameters, to make them appear in the log file
- std::cout << "Input parameters:" << std::endl;
- parameterSet.report();
+ feenableexcept(FE_INVALID);
+ MPIHelper::instance(argc, argv);
+
+ Dune::Timer globalTimer;
+
+ if (argc < 3)
+ DUNE_THROW(Exception, "Usage: ./Cell-Problem <python path> <python module without extension>");
+
+ // Start Python interpreter
+ Python::start();
+ auto pyMain = Python::main();
+ pyMain.runStream()
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << argv[1] << "')" << std::endl;
+ auto pyModule = pyMain.import(argv[2]);
+
+ ParameterTree parameterSet;
+ pyModule.get("parameterSet").toC(parameterSet);
+ // read possible further parameters from the command line
+ ParameterTreeParser::readOptions(argc, argv, parameterSet);
+ // Print all parameters, to make them appear in the log file
+ std::cout << "Input parameters:" << std::endl;
+ parameterSet.report();
//--- Output setter
std::string baseName = parameterSet.get("baseName", "CellProblem-result");
@@ -144,32 +144,32 @@ int main(int argc, char *argv[])
constexpr int dim = 3;
- // Debug/Print Options
+ // Debug/Print Options
bool print_debug = parameterSet.get<bool>("print_debug", false);
// VTK-write options
// bool write_prestrainFunctions = parameterSet.get<bool>("write_prestrainFunctions", false); //Not implemented yet.
/**
- * @brief Generate the grid.
- * Corrector Problem Domain (-1/2,1/2)^3.
- */
+ * @brief Generate the grid.
+ * Corrector Problem Domain (-1/2,1/2)^3.
+ */
FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
- std::array<int,2> numLevels = parameterSet.get<std::array<int,2>>("numLevels", {3,3});
+ std::array<int,2> numLevels = parameterSet.get<std::array<int,2> >("numLevels", {3,3});
int levelCounter = 0;
-
-
+
+
///////////////////////////////////
// Create Data Storage
///////////////////////////////////
//--- Storage:: #1 level #2 L2SymError #3 L2SymErrorOrder #4 L2Norm(sym) #5 L2Norm(sym-analytic) #6 L2Norm(phi_1)
- //std::vector<std::variant<std::string, size_t , double>> Storage_Error;
- //--- Storage:: | level | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
- std::vector<std::variant<std::string, size_t , double>> Storage_Quantities;
+ //std::vector<std::variant<std::string, size_t , double>> Storage_Error;
+ //--- Storage:: | level | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
+ std::vector<std::variant<std::string, size_t , double> > Storage_Quantities;
//--- GridLevel-Loop:
- for(size_t level = numLevels[0] ; level <= numLevels[1]; level++)
+ for(size_t level = numLevels[0] ; level <= numLevels[1]; level++)
{
std::cout << " ----------------------------------" << std::endl;
std::cout << "GridLevel: " << level << std::endl;
@@ -186,7 +186,7 @@ int main(int argc, char *argv[])
using GridView = CellGridType::LeafGridView;
const GridView gridView_CE = grid_CE.leafGridView();
if(print_debug)
- std::cout << "Host grid has " << gridView_CE.size(dim) << " vertices." << std::endl;
+ std::cout << "Host grid has " << gridView_CE.size(dim) << " vertices." << std::endl;
//--- Choose a finite element space for Cell Problem
using namespace Functions::BasisFactory;
@@ -194,25 +194,25 @@ int main(int argc, char *argv[])
//--- Get PeriodicIndices for periodicBasis (Don't do the following in real life: It has quadratic run-time in the number of vertices.)
for (const auto& v1 : vertices(gridView_CE))
- for (const auto& v2 : vertices(gridView_CE))
- if (equivalent(v1.geometry().corner(0), v2.geometry().corner(0)))
- {
- periodicIndices.unifyIndexPair({gridView_CE.indexSet().index(v1)}, {gridView_CE.indexSet().index(v2)});
- }
+ for (const auto& v2 : vertices(gridView_CE))
+ if (equivalent(v1.geometry().corner(0), v2.geometry().corner(0)))
+ {
+ periodicIndices.unifyIndexPair({gridView_CE.indexSet().index(v1)}, {gridView_CE.indexSet().index(v2)});
+ }
Dune::Timer basisSetupTimer;
//--- Setup first order periodic Lagrange-Basis
auto Basis_CE = makeBasis(
- gridView_CE,
- power<dim>(
+ gridView_CE,
+ power<dim>(
Functions::BasisFactory::Experimental::periodic(lagrange<1>(), periodicIndices),
flatLexicographic()
//blockedInterleaved() // Not Implemented
- ));
+ ));
std::cout << "Basis setup took " << basisSetupTimer.elapsed() << " seconds " << std::endl;
if(print_debug)
- std::cout << "power<periodic> basis has " << Basis_CE.dimension() << " degrees of freedom" << std::endl;
+ std::cout << "power<periodic> basis has " << Basis_CE.dimension() << " degrees of freedom" << std::endl;
@@ -239,28 +239,28 @@ int main(int argc, char *argv[])
std::shared_ptr<MaterialType> material = std::make_shared<MaterialType>(gridView_CE,microstructure,parameterSet,pyModule);
std::cout << "Material setup took " << materialSetupTimer.elapsed() << " seconds " << std::endl;
- // --- Get scale ratio
- // double gamma = parameterSet.get<double>("gamma",1.0);
+ // --- Get scale ratio
+ // double gamma = parameterSet.get<double>("gamma",1.0);
std::cout << "scale ratio (gamma) set to : " << material->gamma_ << std::endl;
//--- Compute Correctors
// auto correctorComputer = CorrectorComputer(Basis_CE, material, log, parameterSet);
// auto correctorComputer = CorrectorComputer(Basis_CE, materialPointer, log, parameterSet);
- std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType>>(Basis_CE, material, parameterSet);
+ std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType> >(Basis_CE, material, parameterSet);
correctorComputer->assemble();
correctorComputer->solve();
//--- Check Correctors (options):
if(parameterSet.get<bool>("write_L2Error", false))
- correctorComputer->computeNorms();
+ correctorComputer->computeNorms();
if(parameterSet.get<bool>("write_VTK", false))
- correctorComputer->writeCorrectorsVTK(level);
+ correctorComputer->writeCorrectorsVTK(level);
//--- Additional Test: check orthogonality (75) from paper:
if(parameterSet.get<bool>("write_checkOrthogonality", false))
- correctorComputer->check_Orthogonality();
+ correctorComputer->check_Orthogonality();
//--- Check symmetry of stiffness matrix
if(print_debug)
- correctorComputer->checkSymmetry();
+ correctorComputer->checkSymmetry();
//--- Compute effective quantities
// auto effectiveQuantitiesComputer = EffectiveQuantitiesComputer(correctorComputer,material);
@@ -269,7 +269,7 @@ int main(int argc, char *argv[])
//--- Write material indicator function to VTK
if (parameterSet.get<bool>("write_materialFunctions", false))
- material->writeVTKMaterialFunctions(level);
+ material->writeVTKMaterialFunctions(level);
//--- Get effective quantities
auto Qeff = effectiveQuantitiesComputer.getQeff();
@@ -281,7 +281,7 @@ int main(int argc, char *argv[])
//--- Write effective quantities to matlab folder (for symbolic minimization)
Dune::Timer txtOutputTimer;
if(parameterSet.get<bool>("EffectiveQuantitiesToTxt", true))
- effectiveQuantitiesComputer.writeEffectiveQuantitiesToTxt(outputPath);
+ effectiveQuantitiesComputer.writeEffectiveQuantitiesToTxt(outputPath);
std::cout << "Time to write effective quantities to .txt-files:" << txtOutputTimer.elapsed() << std::endl;
@@ -318,56 +318,60 @@ int main(int argc, char *argv[])
log << "mu_gamma=" << Qeff[2][2] << std::endl; // added for Python-Script
- levelCounter++;
+ levelCounter++;
} // GridLevel-Loop End
- //////////////////////////////////////////
- //--- Print Storage
- //////////////////////////////////////////
- // Dune::Timer writeTableTimer;
- int tableWidth = 12;
- std::cout << center("Levels ",tableWidth) << " | "
- << center("q1",tableWidth) << " | "
- << center("q2",tableWidth) << " | "
- << center("q3",tableWidth) << " | "
- << center("q12",tableWidth) << " | "
- << center("q13",tableWidth) << " | "
- << center("q23",tableWidth) << " | "
- << center("b1",tableWidth) << " | "
- << center("b2",tableWidth) << " | "
- << center("b3",tableWidth) << " | " << "\n";
- std::cout << std::string(tableWidth*10 + 3*10, '-') << "\n";
- log << std::string(tableWidth*10 + 3*10, '-') << "\n";
- log << center("Levels ",tableWidth) << " | "
- << center("q1",tableWidth) << " | "
- << center("q2",tableWidth) << " | "
- << center("q3",tableWidth) << " | "
- << center("q12",tableWidth) << " | "
- << center("q13",tableWidth) << " | "
- << center("q23",tableWidth) << " | "
- << center("b1",tableWidth) << " | "
- << center("b2",tableWidth) << " | "
- << center("b3",tableWidth) << " | " << "\n";
- log << std::string(tableWidth*10 + 3*10, '-') << "\n";
-
- int StorageCount2 = 0;
- for(auto& v: Storage_Quantities)
+ //////////////////////////////////////////
+ //--- Print Storage
+ //////////////////////////////////////////
+ // Dune::Timer writeTableTimer;
+ int tableWidth = 12;
+ std::cout << center("Levels ",tableWidth) << " | "
+ << center("q1",tableWidth) << " | "
+ << center("q2",tableWidth) << " | "
+ << center("q3",tableWidth) << " | "
+ << center("q12",tableWidth) << " | "
+ << center("q13",tableWidth) << " | "
+ << center("q23",tableWidth) << " | "
+ << center("b1",tableWidth) << " | "
+ << center("b2",tableWidth) << " | "
+ << center("b3",tableWidth) << " | " << "\n";
+ std::cout << std::string(tableWidth*10 + 3*10, '-') << "\n";
+ log << std::string(tableWidth*10 + 3*10, '-') << "\n";
+ log << center("Levels ",tableWidth) << " | "
+ << center("q1",tableWidth) << " | "
+ << center("q2",tableWidth) << " | "
+ << center("q3",tableWidth) << " | "
+ << center("q12",tableWidth) << " | "
+ << center("q13",tableWidth) << " | "
+ << center("q23",tableWidth) << " | "
+ << center("b1",tableWidth) << " | "
+ << center("b2",tableWidth) << " | "
+ << center("b3",tableWidth) << " | " << "\n";
+ log << std::string(tableWidth*10 + 3*10, '-') << "\n";
+
+ int StorageCount2 = 0;
+ for(auto& v: Storage_Quantities)
+ {
+ std::visit([tableWidth](auto&& arg){
+ std::cout << center(prd(arg,5,1),tableWidth) << " | ";
+ }, v);
+ std::visit([tableWidth, &log](auto&& arg){
+ log << center(prd(arg,5,1),tableWidth) << " & ";
+ }, v);
+ StorageCount2++;
+ if(StorageCount2 % 10 == 0 )
{
- std::visit([tableWidth](auto&& arg){std::cout << center(prd(arg,5,1),tableWidth) << " | ";}, v);
- std::visit([tableWidth, &log](auto&& arg){log << center(prd(arg,5,1),tableWidth) << " & ";}, v);
- StorageCount2++;
- if(StorageCount2 % 10 == 0 )
- {
- std::cout << std::endl;
- log << std::endl;
- }
+ std::cout << std::endl;
+ log << std::endl;
}
- std::cout << std::string(tableWidth*10 + 3*10, '-') << "\n";
- log << std::string(tableWidth*10 + 3*10, '-') << "\n";
+ }
+ std::cout << std::string(tableWidth*10 + 3*10, '-') << "\n";
+ log << std::string(tableWidth*10 + 3*10, '-') << "\n";
- // std::cout << "Time to write table:" << writeTableTimer.elapsed() << std::endl;
+ // std::cout << "Time to write table:" << writeTableTimer.elapsed() << std::endl;
- log.close();
+ log.close();
- std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
+ std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
}
diff --git a/src/Compute_MuGamma.cc b/src/Compute_MuGamma.cc
index 8d15b40160437f6893b3beb537a8a351cd426a67..13cf84d7eeb8ce637f458a42279ab564d3a011a2 100644
--- a/src/Compute_MuGamma.cc
+++ b/src/Compute_MuGamma.cc
@@ -58,9 +58,9 @@ using namespace Dune;
// ------------------------------------------------------------------------
//
// Solving the 2D "Poisson-Type" Equation ( (38) in the draft)
-// in order to compute mu_Gamma in a faster manner
+// in order to compute mu_Gamma in a faster manner
//
-// ------------------------------------------------------------------------
+// ------------------------------------------------------------------------
@@ -69,115 +69,115 @@ void assembleElementStiffnessMatrix(const LocalView& localView,
Matrix& elementMatrix,
const LocalFunction& mu,
const double gamma
- )
+ )
{
- using Element = typename LocalView::Element;
- constexpr int dim = Element::dimension;
- const Element element = localView.element();
- auto geometry = element.geometry();
+ using Element = typename LocalView::Element;
+ constexpr int dim = Element::dimension;
+ const Element element = localView.element();
+ auto geometry = element.geometry();
- const auto& localFiniteElement = localView.tree().finiteElement();
- const auto nSf = localFiniteElement.localBasis().size();
-
-
-// std::cout << "nSf:" << nSf << std::endl;
-
- elementMatrix.setSize(localView.size(),localView.size());
- elementMatrix = 0;
-
-// int orderQR = 2 * (dim*localFiniteElement.localBasis().order()-1) + 5; // doesnt change anything
- int orderQR = 2 * (dim*localFiniteElement.localBasis().order()-1);
-// int orderQR = 2 * (localFiniteElement.localBasis().order()-1);
- const auto& quadRule = QuadratureRules<double, dim>::rule(element.type(),orderQR);
-
-// std::cout << "QuadRule-Order:" << orderQR << std::endl;
-
-// double muValue = 0.0;
-// std::cout << " ------------------------- one ELEMENT ------------------------" << std::endl;
-
- for (const auto& quadPoint : quadRule)
+ const auto& localFiniteElement = localView.tree().finiteElement();
+ const auto nSf = localFiniteElement.localBasis().size();
+
+
+ // std::cout << "nSf:" << nSf << std::endl;
+
+ elementMatrix.setSize(localView.size(),localView.size());
+ elementMatrix = 0;
+
+ // int orderQR = 2 * (dim*localFiniteElement.localBasis().order()-1) + 5; // doesnt change anything
+ int orderQR = 2 * (dim*localFiniteElement.localBasis().order()-1);
+ // int orderQR = 2 * (localFiniteElement.localBasis().order()-1);
+ const auto& quadRule = QuadratureRules<double, dim>::rule(element.type(),orderQR);
+
+ // std::cout << "QuadRule-Order:" << orderQR << std::endl;
+
+ // double muValue = 0.0;
+ // std::cout << " ------------------------- one ELEMENT ------------------------" << std::endl;
+
+ for (const auto& quadPoint : quadRule)
+ {
+
+
+ const auto& quadPos = quadPoint.position();
+
+ // std::cout << " quadPOS: " << quadPos << std::endl;
+ // TEST
+ // double muValue = mu(quadPos);
+ // std::cout << "muValue:" << muValue << std::endl;
+
+ const auto jacobian = geometry.jacobianInverseTransposed(quadPos);
+ const double integrationElement = geometry.integrationElement(quadPos);
+
+
+
+ std::vector<FieldMatrix<double,1,dim> > referenceGradients;
+ localFiniteElement.localBasis().evaluateJacobian(quadPos,referenceGradients);
+
+ // Compute the shape function gradients on the grid element
+ std::vector<FieldVector<double,dim> > gradients(referenceGradients.size());
+
+ for (size_t i=0; i<gradients.size(); i++)
+ jacobian.mv(referenceGradients[i][0], gradients[i]); //TODO ? passt..
+
+
+ // // print all gradients //TEST
+ // FieldVector<double,dim> tmp = {0.0 , 0.0};
+ // for (size_t i=0; i < nSf; i++)
+ // {
+ // printvector(std::cout, gradients[i], "gradients[i]", "--" );
+ //
+ //
+ // tmp[0] += gradients[i][0];
+ // tmp[1] += gradients[i][1];
+ //
+ // // tmp[0] += coeffVector[globalIdx]*gradients[i][0]; // 3D-Version
+ // // tmp[1] += coeffVector[globalIdx]*gradients[i][2];
+ // // printvector(std::cout, tmp, "tmp", "--" );
+ //
+ // }
+ // printvector(std::cout, tmp, "sum of basisfunction Gradients", "--" );
+
+ for (size_t p=0; p<elementMatrix.N(); p++)
{
-
-
- const auto& quadPos = quadPoint.position();
-
-// std::cout << " quadPOS: " << quadPos << std::endl;
- // TEST
-// double muValue = mu(quadPos);
-// std::cout << "muValue:" << muValue << std::endl;
-
- const auto jacobian = geometry.jacobianInverseTransposed(quadPos);
- const double integrationElement = geometry.integrationElement(quadPos);
-
-
-
- std::vector<FieldMatrix<double,1,dim> > referenceGradients;
- localFiniteElement.localBasis().evaluateJacobian(quadPos,referenceGradients);
-
- // Compute the shape function gradients on the grid element
- std::vector<FieldVector<double,dim> > gradients(referenceGradients.size());
-
- for (size_t i=0; i<gradients.size(); i++)
- jacobian.mv(referenceGradients[i][0], gradients[i]); //TODO ? passt..
-
-
-// // print all gradients //TEST
-// FieldVector<double,dim> tmp = {0.0 , 0.0};
-// for (size_t i=0; i < nSf; i++)
-// {
-// printvector(std::cout, gradients[i], "gradients[i]", "--" );
-//
-//
-// tmp[0] += gradients[i][0];
-// tmp[1] += gradients[i][1];
-//
-// // tmp[0] += coeffVector[globalIdx]*gradients[i][0]; // 3D-Version
-// // tmp[1] += coeffVector[globalIdx]*gradients[i][2];
-// // printvector(std::cout, tmp, "tmp", "--" );
-//
-// }
-// printvector(std::cout, tmp, "sum of basisfunction Gradients", "--" );
-
- for (size_t p=0; p<elementMatrix.N(); p++)
- {
- for (size_t q=0; q<elementMatrix.M(); q++)
- {
-// auto localRow = localView.tree().localIndex(p); // VERTAUSCHT?!?!
-// auto localCol = localView.tree().localIndex(q);
- auto localRow = localView.tree().localIndex(q);
- auto localCol = localView.tree().localIndex(p);
-
-// auto value = mu(quadPos)*(2.0* gradients[p][0] * gradients[q][0])+ mu(quadPos)*((1.0/(std::pow(gamma,2)))*(gradients[p][1] * gradients[q][1]));
-// auto value = (mu(quadPos)*gradients[p][0] * gradients[q][0])+ ((1.0/gamma)*(gradients[p][1] * gradients[q][1]));
-
-
-
-// std::cout << "gradients[p][0]" << gradients[p][0] << std::endl;
-// std::cout << "gradients[q][0]" << gradients[q][0] << std::endl;
-// std::cout << "(1.0/std::pow(gamma,2))*gradients[p][1]" << (1.0/std::pow(gamma,2))*gradients[p][1]<< std::endl;
-
-
-
-// auto value3 = mu(quadPos)*(1.0/gamma)*gradients[p][2]; // 3D-Version
-// auto value4 = value3*gradients[q][2]; // 3D-Version
-
- auto value1 = 2.0*mu(quadPos)* gradients[p][0] *gradients[q][0]; //#1
-// auto value1 = 2.0*mu(quadPos)*sqrt(2.0)* gradients[p][0] *gradients[q][0]; // TEST TODO warum passt es damit besser bei gamma = 1.0 ???
-// auto value2 = mu(quadPos)*(1.0/std::pow(gamma,2))*gradients[p][1] * gradients[q][1] ;
-
-
-
-
-
- auto value2 = 2.0*mu(quadPos)*(1.0/std::pow(gamma,2))*gradients[p][1] * gradients[q][1] ; //#1 TEST FAKTOR 2 hat hier gefehlt?!?!
-
- auto value = value1 + value2;
-
- elementMatrix[localRow][localCol] += value * quadPoint.weight() * integrationElement;
- }
- }
+ for (size_t q=0; q<elementMatrix.M(); q++)
+ {
+ // auto localRow = localView.tree().localIndex(p); // VERTAUSCHT?!?!
+ // auto localCol = localView.tree().localIndex(q);
+ auto localRow = localView.tree().localIndex(q);
+ auto localCol = localView.tree().localIndex(p);
+
+ // auto value = mu(quadPos)*(2.0* gradients[p][0] * gradients[q][0])+ mu(quadPos)*((1.0/(std::pow(gamma,2)))*(gradients[p][1] * gradients[q][1]));
+ // auto value = (mu(quadPos)*gradients[p][0] * gradients[q][0])+ ((1.0/gamma)*(gradients[p][1] * gradients[q][1]));
+
+
+
+ // std::cout << "gradients[p][0]" << gradients[p][0] << std::endl;
+ // std::cout << "gradients[q][0]" << gradients[q][0] << std::endl;
+ // std::cout << "(1.0/std::pow(gamma,2))*gradients[p][1]" << (1.0/std::pow(gamma,2))*gradients[p][1]<< std::endl;
+
+
+
+ // auto value3 = mu(quadPos)*(1.0/gamma)*gradients[p][2]; // 3D-Version
+ // auto value4 = value3*gradients[q][2]; // 3D-Version
+
+ auto value1 = 2.0*mu(quadPos)* gradients[p][0] *gradients[q][0]; //#1
+ // auto value1 = 2.0*mu(quadPos)*sqrt(2.0)* gradients[p][0] *gradients[q][0]; // TEST TODO warum passt es damit besser bei gamma = 1.0 ???
+ // auto value2 = mu(quadPos)*(1.0/std::pow(gamma,2))*gradients[p][1] * gradients[q][1] ;
+
+
+
+
+
+ auto value2 = 2.0*mu(quadPos)*(1.0/std::pow(gamma,2))*gradients[p][1] * gradients[q][1] ; //#1 TEST FAKTOR 2 hat hier gefehlt?!?!
+
+ auto value = value1 + value2;
+
+ elementMatrix[localRow][localCol] += value * quadPoint.weight() * integrationElement;
+ }
}
+ }
}
@@ -190,114 +190,114 @@ void assembleElementVolumeTerm(const LocalView& localView,
LocalFunction& mu,
const Force& forceTerm)
{
- using Element = typename LocalView::Element;
- auto element = localView.element();
- auto geometry = element.geometry();
-
+ using Element = typename LocalView::Element;
+ auto element = localView.element();
+ auto geometry = element.geometry();
- constexpr int dim = Element::dimension;
- // Set of shape functions for a single element
- const auto& localFiniteElement = localView.tree().finiteElement();
- const auto nSf = localFiniteElement.localBasis().size();
- // Set all entries to zero
- elementRhs.resize(localFiniteElement.size());
- elementRhs = 0;
-
- // A quadrature rule
-// int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1)+5;
- int orderQR = 2 * (dim*localFiniteElement.localBasis().order()-1);
-// int orderQR = 2 * (localFiniteElement.localBasis().order()-1);
-
-// std::cout << "elementRhs.size():" << elementRhs.size() << std::endl;
-
-
-
- const auto& quadRule = QuadratureRules<double,dim>::rule(element.type(), orderQR);
-
- for (const auto& quadPoint : quadRule)
+
+ constexpr int dim = Element::dimension;
+ // Set of shape functions for a single element
+ const auto& localFiniteElement = localView.tree().finiteElement();
+ const auto nSf = localFiniteElement.localBasis().size();
+ // Set all entries to zero
+ elementRhs.resize(localFiniteElement.size());
+ elementRhs = 0;
+
+ // A quadrature rule
+ // int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1)+5;
+ int orderQR = 2 * (dim*localFiniteElement.localBasis().order()-1);
+ // int orderQR = 2 * (localFiniteElement.localBasis().order()-1);
+
+ // std::cout << "elementRhs.size():" << elementRhs.size() << std::endl;
+
+
+
+ const auto& quadRule = QuadratureRules<double,dim>::rule(element.type(), orderQR);
+
+ for (const auto& quadPoint : quadRule)
+ {
+ const FieldVector<double,dim>& quadPos = quadPoint.position();
+
+ const double integrationElement = element.geometry().integrationElement(quadPos);
+ // double functionValue = forceTerm(element.geometry().global(quadPos));
+
+ // Evaluate all shape function values at this point
+ // std::vector<FieldVector<double,1> > shapeFunctionValues;
+ // localFiniteElement.localBasis().evaluateFunction(quadPos, shapeFunctionValues);
+
+ const auto jacobian = geometry.jacobianInverseTransposed(quadPos);
+
+ std::vector<FieldMatrix<double,1,dim> > referenceGradients;
+ localFiniteElement.localBasis().evaluateJacobian(quadPos,referenceGradients);
+
+ // Compute the shape function gradients on the grid element
+ std::vector<FieldVector<double,dim> > gradients(referenceGradients.size());
+ for (size_t i=0; i<gradients.size(); i++)
+ jacobian.mv(referenceGradients[i][0], gradients[i]);
+
+
+
+ // Actually compute the vector entries
+ for (size_t p=0; p<nSf; p++)
{
- const FieldVector<double,dim>& quadPos = quadPoint.position();
-
- const double integrationElement = element.geometry().integrationElement(quadPos);
-// double functionValue = forceTerm(element.geometry().global(quadPos));
-
- // Evaluate all shape function values at this point
-// std::vector<FieldVector<double,1> > shapeFunctionValues;
-// localFiniteElement.localBasis().evaluateFunction(quadPos, shapeFunctionValues);
-
- const auto jacobian = geometry.jacobianInverseTransposed(quadPos);
-
- std::vector<FieldMatrix<double,1,dim> > referenceGradients;
- localFiniteElement.localBasis().evaluateJacobian(quadPos,referenceGradients);
-
- // Compute the shape function gradients on the grid element
- std::vector<FieldVector<double,dim> > gradients(referenceGradients.size());
- for (size_t i=0; i<gradients.size(); i++)
- jacobian.mv(referenceGradients[i][0], gradients[i]);
-
-
-
- // Actually compute the vector entries
- for (size_t p=0; p<nSf; p++)
- {
- auto localIndex = localView.tree().localIndex(p);
-// elementRhs[localIndex] += shapeFunctionValues[p] * forceTerm(quadPos) * quadPoint.weight() * integrationElement;
-// auto value = shapeFunctionValues[p]* (sqrt(2.0)*mu(quadPos) *forceTerm(quadPos));
-// auto value = -1.0*gradients[p][0] * (sqrt(2.0)*mu(quadPos) *forceTerm(quadPos)); //NEGATIVE!!! TODO
-// auto value = -2.0*mu(quadPos)*(sqrt(2.0)*forceTerm(quadPos))*gradients[p][0] ;
-// auto value = -1.0*mu(quadPos)*forceTerm(quadPos)*gradients[p][0] ;
-
-
-
-
-// auto value = -2.0*sqrt(2.0)*mu(quadPos)*forceTerm(quadPos)*gradients[p][0]; //#1
-
-
- auto value = 2.0*sqrt(2.0)*mu(quadPos)*forceTerm(quadPos)*gradients[p][0]; // TEST
-
-
-
-
-
-// auto value = 2.0*mu(quadPos)*sqrt(2.0)*forceTerm(quadPos)*gradients[p][0];
-// auto value = -2.0*mu(quadPos)*sqrt(2.0)*quadPos[1]*gradients[p][0]; //TEST
-// std::cout << "value:" << value << std::endl;
-
-// std::cout << "forceTerm(quadPos):" << forceTerm(quadPos) << std::endl;
-// std::cout << "quadPos:" << quadPos << std::endl;
-// std::cout << "integrationElement:" << integrationElement << std::endl;
-
-// auto value = -1.0*sqrt(2.0)*forceTerm(quadPos)*gradients[p][0] ; //TEST
-
-// auto value = -1.0*mu(quadPos)*sqrt(2.0)*forceTerm(quadPos)*forceTerm(quadPos)*gradients[p][0]; //TEST
-
- elementRhs[localIndex] += value * quadPoint.weight() * integrationElement;
- }
+ auto localIndex = localView.tree().localIndex(p);
+ // elementRhs[localIndex] += shapeFunctionValues[p] * forceTerm(quadPos) * quadPoint.weight() * integrationElement;
+ // auto value = shapeFunctionValues[p]* (sqrt(2.0)*mu(quadPos) *forceTerm(quadPos));
+ // auto value = -1.0*gradients[p][0] * (sqrt(2.0)*mu(quadPos) *forceTerm(quadPos)); //NEGATIVE!!! TODO
+ // auto value = -2.0*mu(quadPos)*(sqrt(2.0)*forceTerm(quadPos))*gradients[p][0] ;
+ // auto value = -1.0*mu(quadPos)*forceTerm(quadPos)*gradients[p][0] ;
+
+
+
+
+ // auto value = -2.0*sqrt(2.0)*mu(quadPos)*forceTerm(quadPos)*gradients[p][0]; //#1
+
+
+ auto value = 2.0*sqrt(2.0)*mu(quadPos)*forceTerm(quadPos)*gradients[p][0]; // TEST
+
+
+
+
+
+ // auto value = 2.0*mu(quadPos)*sqrt(2.0)*forceTerm(quadPos)*gradients[p][0];
+ // auto value = -2.0*mu(quadPos)*sqrt(2.0)*quadPos[1]*gradients[p][0]; //TEST
+ // std::cout << "value:" << value << std::endl;
+
+ // std::cout << "forceTerm(quadPos):" << forceTerm(quadPos) << std::endl;
+ // std::cout << "quadPos:" << quadPos << std::endl;
+ // std::cout << "integrationElement:" << integrationElement << std::endl;
+
+ // auto value = -1.0*sqrt(2.0)*forceTerm(quadPos)*gradients[p][0] ; //TEST
+
+ // auto value = -1.0*mu(quadPos)*sqrt(2.0)*forceTerm(quadPos)*forceTerm(quadPos)*gradients[p][0]; //TEST
+
+ elementRhs[localIndex] += value * quadPoint.weight() * integrationElement;
}
+ }
}
// Get the occupation pattern of the stiffness matrix
template<class Basis>
void getOccupationPattern(const Basis& basis, MatrixIndexSet& nb)
{
- nb.resize(basis.size(), basis.size());
- auto gridView = basis.gridView();
- // A loop over all elements of the grid
- auto localView = basis.localView();
- for (const auto& element : elements(gridView))
+ nb.resize(basis.size(), basis.size());
+ auto gridView = basis.gridView();
+ // A loop over all elements of the grid
+ auto localView = basis.localView();
+ for (const auto& element : elements(gridView))
+ {
+ localView.bind(element);
+ for (size_t i=0; i<localView.size(); i++)
{
- localView.bind(element);
- for (size_t i=0; i<localView.size(); i++)
- {
- // The global index of the i-th vertex of the element
- auto row = localView.index(i);
- for (size_t j=0; j<localView.size(); j++ )
- {
- // The global index of the j-th vertex of the element
- auto col = localView.index(j);
- nb.add(row,col);
- }
- }
+ // The global index of the i-th vertex of the element
+ auto row = localView.index(i);
+ for (size_t j=0; j<localView.size(); j++ )
+ {
+ // The global index of the j-th vertex of the element
+ auto col = localView.index(j);
+ nb.add(row,col);
+ }
}
+ }
}
/** \brief Assemble the Laplace stiffness matrix on the given grid view */
template<class Basis, class Matrix, class Vector, class LocalFunction, class Force>
@@ -308,61 +308,61 @@ void assemblePoissonProblem(const Basis& basis,
const Force& forceTerm,
const double gamma)
{
- auto gridView = basis.gridView();
+ auto gridView = basis.gridView();
+
+
+ MatrixIndexSet occupationPattern;
+ getOccupationPattern(basis, occupationPattern);
+ occupationPattern.exportIdx(matrix);
+ matrix = 0;
+
+
+ auto loadGVF = Dune::Functions::makeGridViewFunction(forceTerm, basis.gridView());
+ auto loadFunctional = localFunction(loadGVF);
+ b.resize(basis.dimension());
+ b = 0;
+
+ auto localView = basis.localView();
+
+ for (const auto& element : elements(gridView))
+ {
+
+ localView.bind(element);
+ muLocal.bind(element);
+ loadFunctional.bind(element);
- MatrixIndexSet occupationPattern;
- getOccupationPattern(basis, occupationPattern);
- occupationPattern.exportIdx(matrix);
- matrix = 0;
-
-
- auto loadGVF = Dune::Functions::makeGridViewFunction(forceTerm, basis.gridView());
- auto loadFunctional = localFunction(loadGVF);
- b.resize(basis.dimension());
- b = 0;
+ // Dune::Matrix<double> elementMatrix;
+ Dune::Matrix<FieldMatrix<double,1,1> > elementMatrix;
+ // Dune::Matrix<FieldMatrix<double,1,1> > elementMatrix;
+ assembleElementStiffnessMatrix(localView, elementMatrix, muLocal, gamma);
- auto localView = basis.localView();
-
- for (const auto& element : elements(gridView))
+ // std::cout << "elementMatrix.N() "<< elementMatrix.N() << std::endl;
+ // std::cout << "elementMatrix.M() " << elementMatrix.M() << std::endl;
+
+
+ for(size_t p=0; p<elementMatrix.N(); p++)
{
+ auto row = localView.index(p);
+ for (size_t q=0; q<elementMatrix.M(); q++ )
+ {
+ auto col = localView.index(q);
+ matrix[row][col] += elementMatrix[p][q];
+ }
+ }
- localView.bind(element);
- muLocal.bind(element);
- loadFunctional.bind(element);
-
-
-// Dune::Matrix<double> elementMatrix;
- Dune::Matrix<FieldMatrix<double,1,1> > elementMatrix;
-// Dune::Matrix<FieldMatrix<double,1,1> > elementMatrix;
- assembleElementStiffnessMatrix(localView, elementMatrix, muLocal, gamma);
-
-// std::cout << "elementMatrix.N() "<< elementMatrix.N() << std::endl;
-// std::cout << "elementMatrix.M() " << elementMatrix.M() << std::endl;
-
-
- for(size_t p=0; p<elementMatrix.N(); p++)
- {
- auto row = localView.index(p);
- for (size_t q=0; q<elementMatrix.M(); q++ )
- {
- auto col = localView.index(q);
- matrix[row][col] += elementMatrix[p][q];
- }
- }
-
-// BlockVector<double> elementRhs;
- BlockVector<FieldVector<double,1> > elementRhs;
- assembleElementVolumeTerm(localView, elementRhs, muLocal, loadFunctional);
- for (size_t p=0; p<elementRhs.size(); p++)
- {
- // The global index of the p-th vertex of the element
- auto row = localView.index(p);
- b[row] += elementRhs[p];
- }
+ // BlockVector<double> elementRhs;
+ BlockVector<FieldVector<double,1> > elementRhs;
+ assembleElementVolumeTerm(localView, elementRhs, muLocal, loadFunctional);
+ for (size_t p=0; p<elementRhs.size(); p++)
+ {
+ // The global index of the p-th vertex of the element
+ auto row = localView.index(p);
+ b[row] += elementRhs[p];
}
+ }
}
@@ -372,145 +372,145 @@ void assemblePoissonProblem(const Basis& basis,
template<class Basis, class Vector, class LocalFunc1, class LocalFunc2>
double computeMuGamma(const Basis& basis,
Vector& coeffVector,
- const double gamma,
+ const double gamma,
LocalFunc1& mu,
LocalFunc2& Func
- )
+ )
{
-// constexpr int dim = Basis::LocalView::Element::dimension;
-
+ // constexpr int dim = Basis::LocalView::Element::dimension;
+
double output = 0.0;
double Term1 = 0.0;
double Term2 = 0.0;
double Term11 = 0.0;
constexpr int dim = 2;
-// constexpr int dim = 3;
+ // constexpr int dim = 3;
auto localView = basis.localView();
-
-// auto solutionFunction = Functions::makeDiscreteGlobalBasisFunction<double>(basis, coeffVector);
-// auto localSol = localFunction(solutionFunction);
-
-// auto loadGVF = Dune::Functions::makeGridViewFunction(x3Fun, basis.gridView());
-// auto x3Functional = localFunction(loadGVF);
-
-
-
-
+
+ // auto solutionFunction = Functions::makeDiscreteGlobalBasisFunction<double>(basis, coeffVector);
+ // auto localSol = localFunction(solutionFunction);
+
+ // auto loadGVF = Dune::Functions::makeGridViewFunction(x3Fun, basis.gridView());
+ // auto x3Functional = localFunction(loadGVF);
+
+
+
+
double area = 0.0;
-
+
for(const auto& element : elements(basis.gridView()))
{
-
-// std::cout << " ------------------------- one ELEMENT ------------------------" << std::endl;
- double elementEnergy1 = 0.0;
- double elementEnergy2 = 0.0;
-
- localView.bind(element);
- mu.bind(element);
+
+ // std::cout << " ------------------------- one ELEMENT ------------------------" << std::endl;
+ double elementEnergy1 = 0.0;
+ double elementEnergy2 = 0.0;
+
+ localView.bind(element);
+ mu.bind(element);
// x3Functional.bind(element);
- Func.bind(element);
-
- auto geometry = element.geometry();
- const auto& localFiniteElement = localView.tree().finiteElement();
- const auto nSf = localFiniteElement.localBasis().size();
+ Func.bind(element);
-// int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1)+5;
- int orderQR = 2 * (dim*localFiniteElement.localBasis().order()-1);
+ auto geometry = element.geometry();
+ const auto& localFiniteElement = localView.tree().finiteElement();
+ const auto nSf = localFiniteElement.localBasis().size();
+
+ // int orderQR = 2*(dim*localFiniteElement.localBasis().order()-1)+5;
+ int orderQR = 2 * (dim*localFiniteElement.localBasis().order()-1);
// int orderQR = 2 * (localFiniteElement.localBasis().order()-1);
- const auto& quad = QuadratureRules<double, dim>::rule(element.type(), orderQR); // TODO WARUM HIER KEINE COLOR ?? ERROR
-
+ const auto& quad = QuadratureRules<double, dim>::rule(element.type(), orderQR); // TODO WARUM HIER KEINE COLOR ?? ERROR
+
// std::cout << " ------------------------- one ELEMENT ------------------------" << std::endl;
- for(const auto& quadPoint : quad)
- {
- const auto& quadPos = quadPoint.position();
- // const FieldVector<double,dim>& quadPos = quadPoint.position();
- // std::cout << " quadPOS: " << quadPos << std::endl;
+ for(const auto& quadPoint : quad)
+ {
+ const auto& quadPos = quadPoint.position();
+ // const FieldVector<double,dim>& quadPos = quadPoint.position();
+ // std::cout << " quadPOS: " << quadPos << std::endl;
-
- const auto jacobianInverseTransposed = geometry.jacobianInverseTransposed(quadPos);
- const double integrationElement = geometry.integrationElement(quadPos);
-
- area += quadPoint.weight() * integrationElement;
-
- std::vector< FieldMatrix<double, 1, dim>> referenceGradients;
- localFiniteElement.localBasis().evaluateJacobian(quadPos,referenceGradients);
-
- // Compute the shape function gradients on the grid element
- std::vector<FieldVector<double,dim>> gradients(referenceGradients.size());
-
- for (size_t i=0; i<gradients.size(); i++)
- jacobianInverseTransposed.mv(referenceGradients[i][0], gradients[i]);
-
- FieldVector<double,dim> tmp(0.0);
- // std::cout << "integrationElement :" << integrationElement << std::endl;
- // std::cout << "quadPoint.weight() :" << quadPoint.weight() << std::endl;
-
- for (size_t i=0; i < nSf; i++)
- {
- size_t localIdx = localView.tree().localIndex(i); // hier i:leafIdx
- size_t globalIdx = localView.index(localIdx);
- // printvector(std::cout, gradients[i], "gradients[i]", "--" );
+
+ const auto jacobianInverseTransposed = geometry.jacobianInverseTransposed(quadPos);
+ const double integrationElement = geometry.integrationElement(quadPos);
+
+ area += quadPoint.weight() * integrationElement;
+
+ std::vector< FieldMatrix<double, 1, dim> > referenceGradients;
+ localFiniteElement.localBasis().evaluateJacobian(quadPos,referenceGradients);
+
+ // Compute the shape function gradients on the grid element
+ std::vector<FieldVector<double,dim> > gradients(referenceGradients.size());
+
+ for (size_t i=0; i<gradients.size(); i++)
+ jacobianInverseTransposed.mv(referenceGradients[i][0], gradients[i]);
+
+ FieldVector<double,dim> tmp(0.0);
+ // std::cout << "integrationElement :" << integrationElement << std::endl;
+ // std::cout << "quadPoint.weight() :" << quadPoint.weight() << std::endl;
+
+ for (size_t i=0; i < nSf; i++)
+ {
+ size_t localIdx = localView.tree().localIndex(i); // hier i:leafIdx
+ size_t globalIdx = localView.index(localIdx);
+ // printvector(std::cout, gradients[i], "gradients[i]", "--" );
// std::cout << "coeffVector[globalIdx]:" << coeffVector[globalIdx] << std::endl;
- tmp[0] += coeffVector[globalIdx]*gradients[i][0];
- tmp[1] += coeffVector[globalIdx]*gradients[i][1];
+ tmp[0] += coeffVector[globalIdx]*gradients[i][0];
+ tmp[1] += coeffVector[globalIdx]*gradients[i][1];
// tmp[0] += coeffVector[globalIdx]*gradients[i][0]; // 3D-Version
// tmp[1] += coeffVector[globalIdx]*gradients[i][2];
- // printvector(std::cout, tmp, "tmp", "--" );
- }
- // printvector(std::cout, tmp, "gradient_w", "--" );
-
- // auto value1 = std::pow( ((quadPos[1]/sqrt(2.0))+ (tmp[0]/2.0)) ,2); //TEST
-
-
-
- auto q1 = (Func(quadPos)/sqrt(2.0)); //#1
- auto q2 = (tmp[0]/2.0); //#1
-
-
-// auto q2 = (tmp[0]/sqrt(2.0)); // TEST !!!!!!!!!!
-
-
-
-
+ // printvector(std::cout, tmp, "tmp", "--" );
+ }
+ // printvector(std::cout, tmp, "gradient_w", "--" );
- // CHECK : BEITRÄGE CHECKEN!!!!
-
-// std::cout << "Beitrag1: " << q2 << std::endl;
-// std::cout << "Beitrag2: " << (tmp[1]/(2.0*gamma)) << std::endl;
-//
-//
-//
-
- auto q3 = q1 - q2; // TEST
-
-// auto q3 = q1 + q2; // #1
- auto value1 = std::pow(q3,2);
+ // auto value1 = std::pow( ((quadPos[1]/sqrt(2.0))+ (tmp[0]/2.0)) ,2); //TEST
-
-
-// auto value2 = std::pow( (tmp[1]/(2.0*gamma) ) , 2);
- auto value2 = std::pow( (tmp[1]/(sqrt(2.0)*gamma) ) , 2);
-
-
-// auto value = 2.0*mu(quadPos)*(2.0*value1 + value2);
-
-
- elementEnergy1 += 2.0*mu(quadPos)* 2.0*value1 * quadPoint.weight() * integrationElement;
- elementEnergy2 += 2.0*mu(quadPos)* value2 * quadPoint.weight() * integrationElement;
- // std::cout << "output:" << output << std::endl;
- }
-// std::cout << "elementEnergy:" << elementEnergy << std::endl;
+ auto q1 = (Func(quadPos)/sqrt(2.0)); //#1
+ auto q2 = (tmp[0]/2.0); //#1
+
+
+ // auto q2 = (tmp[0]/sqrt(2.0)); // TEST !!!!!!!!!!
+
+
+
+
+
+ // CHECK : BEITRÄGE CHECKEN!!!!
+
+ // std::cout << "Beitrag1: " << q2 << std::endl;
+ // std::cout << "Beitrag2: " << (tmp[1]/(2.0*gamma)) << std::endl;
+ //
+ //
+ //
+
+ auto q3 = q1 - q2; // TEST
+
+ // auto q3 = q1 + q2; // #1
+ auto value1 = std::pow(q3,2);
+
+
+
+ // auto value2 = std::pow( (tmp[1]/(2.0*gamma) ) , 2);
+ auto value2 = std::pow( (tmp[1]/(sqrt(2.0)*gamma) ) , 2);
+
- Term1 += elementEnergy1;
- Term2 += elementEnergy2;
-
-// std::cout << "output: " << output << std::endl;
- }
+
+ // auto value = 2.0*mu(quadPos)*(2.0*value1 + value2);
+
+
+
+ elementEnergy1 += 2.0*mu(quadPos)* 2.0*value1 * quadPoint.weight() * integrationElement;
+ elementEnergy2 += 2.0*mu(quadPos)* value2 * quadPoint.weight() * integrationElement;
+ // std::cout << "output:" << output << std::endl;
+ }
+ // std::cout << "elementEnergy:" << elementEnergy << std::endl;
+
+ Term1 += elementEnergy1;
+ Term2 += elementEnergy2;
+
+ // std::cout << "output: " << output << std::endl;
+ }
std::cout << "Term1: " << Term1 << std::endl;
std::cout << "Term2: " << Term2 << std::endl;
output = Term1 + Term2;
@@ -522,45 +522,45 @@ double computeMuGamma(const Basis& basis,
// // -----------------------------------------------------------
/*
-template<class Basis, class Vector, class LocalFunc1, class LocalFunc2>
-double computeMuGamma(const Basis& basis,
+ template<class Basis, class Vector, class LocalFunc1, class LocalFunc2>
+ double computeMuGamma(const Basis& basis,
Vector& coeffVector,
- const double gamma,
+ const double gamma,
LocalFunc1& mu,
LocalFunc2& Func
)
-{
+ {
-// constexpr int dim = Basis::LocalView::Element::dimension;
-
- double output = 0.0;
- constexpr int dim = 2;
-// constexpr int dim = 3;
- auto localView = basis.localView();
-
-// auto solutionFunction = Functions::makeDiscreteGlobalBasisFunction<double>(basis, coeffVector);
-// auto localSol = localFunction(solutionFunction);
-
-// auto loadGVF = Dune::Functions::makeGridViewFunction(x3Fun, basis.gridView());
-// auto x3Functional = localFunction(loadGVF);
-
-
-
-
- double area = 0.0;
-
- for(const auto& element : elements(basis.gridView()))
- {
-
-// std::cout << " ------------------------- one ELEMENT ------------------------" << std::endl;
+ // constexpr int dim = Basis::LocalView::Element::dimension;
+
+ double output = 0.0;
+ constexpr int dim = 2;
+ // constexpr int dim = 3;
+ auto localView = basis.localView();
+
+ // auto solutionFunction = Functions::makeDiscreteGlobalBasisFunction<double>(basis, coeffVector);
+ // auto localSol = localFunction(solutionFunction);
+
+ // auto loadGVF = Dune::Functions::makeGridViewFunction(x3Fun, basis.gridView());
+ // auto x3Functional = localFunction(loadGVF);
+
+
+
+
+ double area = 0.0;
+
+ for(const auto& element : elements(basis.gridView()))
+ {
+
+ // std::cout << " ------------------------- one ELEMENT ------------------------" << std::endl;
double elementEnergy = 0.0;
-
+
localView.bind(element);
mu.bind(element);
// x3Functional.bind(element);
Func.bind(element);
-
+
auto geometry = element.geometry();
const auto& localFiniteElement = localView.tree().finiteElement();
const auto nSf = localFiniteElement.localBasis().size();
@@ -569,92 +569,92 @@ double computeMuGamma(const Basis& basis,
int orderQR = 2 * (dim*localFiniteElement.localBasis().order()-1);
// int orderQR = 2 * (localFiniteElement.localBasis().order()-1);
const auto& quad = QuadratureRules<double, dim>::rule(element.type(), orderQR); // TODO WARUM HIER KEINE COLOR ?? ERROR
-
+
// std::cout << " ------------------------- one ELEMENT ------------------------" << std::endl;
for(const auto& quadPoint : quad)
{
-
+
const auto& quadPos = quadPoint.position();
// const FieldVector<double,dim>& quadPos = quadPoint.position();
// std::cout << " quadPOS: " << quadPos << std::endl;
-
+
const auto jacobianInverseTransposed = geometry.jacobianInverseTransposed(quadPos);
const double integrationElement = geometry.integrationElement(quadPos);
-
+
area += quadPoint.weight() * integrationElement;
-
+
std::vector< FieldMatrix<double, 1, dim>> referenceGradients;
localFiniteElement.localBasis().evaluateJacobian(quadPos,referenceGradients);
-
+
// Compute the shape function gradients on the grid element
std::vector<FieldVector<double,dim>> gradients(referenceGradients.size());
-
+
for (size_t i=0; i<gradients.size(); i++)
jacobianInverseTransposed.mv(referenceGradients[i][0], gradients[i]);
-
-// FieldVector<double,dim> tmp = {0.0 , 0.0};
+
+ // FieldVector<double,dim> tmp = {0.0 , 0.0};
FieldVector<double,dim> tmp(0.0);
- // FieldVector<double,dim> tmp = {0.0 ,0.0, 0.0}; //3D-Version
-
+ // FieldVector<double,dim> tmp = {0.0 ,0.0, 0.0}; //3D-Version
+
// std::cout << "integrationElement :" << integrationElement << std::endl;
// std::cout << "quadPoint.weight() :" << quadPoint.weight() << std::endl;
-
+
for (size_t i=0; i < nSf; i++)
{
size_t localIdx = localView.tree().localIndex(i); // hier i:leafIdx
size_t globalIdx = localView.index(localIdx);
-
- // printvector(std::cout, gradients[i], "gradients[i]", "--" );
+
+ // printvector(std::cout, gradients[i], "gradients[i]", "--" );
// std::cout << "coeffVector[globalIdx]:" << coeffVector[globalIdx] << std::endl;
-
+
tmp[0] += coeffVector[globalIdx]*gradients[i][0];
tmp[1] += coeffVector[globalIdx]*gradients[i][1];
-
+
// tmp[0] += coeffVector[globalIdx]*gradients[i][0]; // 3D-Version
// tmp[1] += coeffVector[globalIdx]*gradients[i][2];
- // printvector(std::cout, tmp, "tmp", "--" );
+ // printvector(std::cout, tmp, "tmp", "--" );
}
// printvector(std::cout, tmp, "gradient_w", "--" );
-
-
+
+
// auto value1 = std::pow( ((quadPos[1]/sqrt(2.0))+ (tmp[0]/2.0)) ,2); //TEST
-
-
-
+
+
+
auto q1 = (Func(quadPos)/sqrt(2.0));
auto q2 = (tmp[0]/2.0);
-
-
-// auto q2 = (tmp[0]/sqrt(2.0)); // TEST !!!!!!!!!!
-
-
-
-
+
+
+ // auto q2 = (tmp[0]/sqrt(2.0)); // TEST !!!!!!!!!!
+
+
+
+
// CHECK : BEITRÄGE CHECKEN!!!!
-
+
std::cout << "Beitrag1: " << q2 << std::endl;
std::cout << "Beitrag2: " << (tmp[1]/(2.0*gamma)) << std::endl;
-
-
-
-
+
+
+
+
auto q3 = q1 + q2;
auto value1 = std::pow(q3,2);
-// auto value1 = std::pow( ((Func(quadPos)/sqrt(2.0)) + (tmp[0]/2.0)) , 2);
-
-
+ // auto value1 = std::pow( ((Func(quadPos)/sqrt(2.0)) + (tmp[0]/2.0)) , 2);
+
+
auto value2 = std::pow( (tmp[1]/(2.0*gamma) ) , 2);
-// auto value2 = std::pow( (tmp[1]/(sqrt(2.0)*gamma) ) , 2); //TEST
-
-
+ // auto value2 = std::pow( (tmp[1]/(sqrt(2.0)*gamma) ) , 2); //TEST
+
+
// auto value2 = (1.0/(std::pow(gamma,2)))* std::pow(tmp[1],2)/4.0 ; //TEST
-
+
auto value = 2.0*mu(quadPos)*(2.0*value1 + value2);
-
+
// std::cout << "quadPos[1]:" << quadPos[1]<< std::endl;
// std::cout << "Func(quadPos):" << Func(quadPos) << std::endl;
// std::cout << "sqrt(2.0):" << sqrt(2.0) << std::endl;
@@ -663,38 +663,38 @@ double computeMuGamma(const Basis& basis,
// std::cout << "value1:" << value1 << std::endl;
// std::cout << "value2:" << value2 << std::endl;
// std::cout << "value:" << value << std::endl;
-
-
+
+
// auto value = 2.0*mu(quadPos)*(2.0*std::pow( ((x3Functional(quadPos)/sqrt(2.0))+ (tmp[0]/2.0)) ,2) + std::pow( (tmp[1]/(2.0*gamma) ) ,2) );
-
-
-
+
+
+
// auto value = 2.0*mu(quadPos)*(2.0* (((x3Functional(quadPos)*x3Functional(quadPos))/2.0) + std::pow( (tmp[0]/2.0) ,2)) + std::pow( (tmp[1]/(2.0*gamma) ) ,2) ); //TEST
-
+
// auto value = 2.0*mu(quadPos)*(2.0*std::pow( ((x3Functional(quadPos)/sqrt(2.0))+ (tmp[0]/2.0)) ,2) ) + std::pow( (tmp[1]/(2.0*gamma) ) ,2) ; //TEST
// auto value = 2.0*mu(quadPos)*(2.0*std::pow( ((x3Functional(quadPos)/sqrt(2.0))+ (tmp[0]/2.0)) ,2)) + (1.0/gamma)*std::pow( (tmp[1]/2.0) ,2) ; //TEST
// auto value = 2.0*mu(quadPos)*(2.0*std::pow( ((x3Functional(quadPos)/sqrt(2.0))+ (tmp[0]/2.0)) ,2) + (1.0/gamma)*std::pow( (tmp[1]/2.0) ,2) ) ; //TEST
-
+
elementEnergy += value * quadPoint.weight() * integrationElement;
// std::cout << "output:" << output << std::endl;
}
-// std::cout << "elementEnergy:" << elementEnergy << std::endl;
+ // std::cout << "elementEnergy:" << elementEnergy << std::endl;
output += elementEnergy;
-// std::cout << "output: " << output << std::endl;
- }
- std::cout << "Domain-Area: " << area << std::endl;
- return (1.0/area) * output;
-}
-// -------------------------------------------------------------------------
-*/
+ // std::cout << "output: " << output << std::endl;
+ }
+ std::cout << "Domain-Area: " << area << std::endl;
+ return (1.0/area) * output;
+ }
+ // -------------------------------------------------------------------------
+ */
- // Check whether two points are equal on R/Z x R/Z
- auto equivalent = [](const FieldVector<double,2>& x, const FieldVector<double,2>& y)
- {
- return ( (FloatCmp::eq(x[0],y[0]) or FloatCmp::eq(x[0]+1,y[0]) or FloatCmp::eq(x[0]-1,y[0]))
- and (FloatCmp::eq(x[1],y[1])) );
- };
+// Check whether two points are equal on R/Z x R/Z
+auto equivalent = [](const FieldVector<double,2>& x, const FieldVector<double,2>& y)
+ {
+ return ( (FloatCmp::eq(x[0],y[0]) or FloatCmp::eq(x[0]+1,y[0]) or FloatCmp::eq(x[0]-1,y[0]))
+ and (FloatCmp::eq(x[1],y[1])) );
+ };
@@ -703,8 +703,8 @@ int main(int argc, char *argv[])
MPIHelper::instance(argc, argv);
-
-
+
+
ParameterTree parameterSet;
if (argc < 2)
ParameterTreeParser::readINITree("../../inputs/computeMuGamma.parset", parameterSet);
@@ -713,260 +713,262 @@ int main(int argc, char *argv[])
ParameterTreeParser::readINITree(argv[1], parameterSet);
ParameterTreeParser::readOptions(argc, argv, parameterSet);
}
- /////////////////////////////////
- // SET OUTPUT
- /////////////////////////////////
- std::string outputPath = parameterSet.get("outputPath", "/home/klaus/Desktop/DUNE/dune-microstructure/outputs");
- std::fstream log;
- log.open(outputPath + "/outputMuGamma.txt" ,std::ios::out);
- std::cout << "outputPath:" << outputPath << std::endl;
-
-
- //////////////////////////////////
- // Generate the grid
- //////////////////////////////////
- constexpr int dim = 2;
-
- // QUAD-GRID
- FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0});
- FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0});
-// std::array<int, dim> nElements = {16,16};
-
- std::array<int,2> nElements = parameterSet.get<std::array<int,2>>("nElements", {32,32});
- std::cout << "Number of Elements in each direction: " << nElements << std::endl;
- log << "Number of Elements in each direction: " << nElements << std::endl;
-
-
- using CellGridType = YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
- CellGridType grid_CE(lower,upper,nElements);
- using GridView = CellGridType::LeafGridView;
- const GridView gridView = grid_CE.leafGridView();
- using Domain = GridView::Codim<0>::Geometry::GlobalCoordinate;
-
- // ----------- INPUT PARAMETERS -----------------------------
- std::string imp = parameterSet.get<std::string>("material_prestrain_imp", "parametrized_Laminate");
- log << "material_prestrain used: "<< imp << std::endl;
- double gamma = parameterSet.get<double>("gamma", 1.0);
- double theta = parameterSet.get<double>("theta", 1.0/4.0);
- double mu1 = parameterSet.get<double>("mu1", 1.0);
- double beta = parameterSet.get<double>("beta", 2.0);
- double mu2 = beta*mu1;
- std::cout << "Gamma:" << gamma << std::endl;
- std::cout << "Theta:" << theta << std::endl;
- std::cout << "mu1:" << mu1 << std::endl;
- std::cout << "mu2:" << mu2 << std::endl;
- std::cout << "beta:" << beta << std::endl;
- log << "----- Input Parameters -----: " << std::endl;
- log << "gamma: " << gamma << std::endl;
- log << "theta: " << theta << std::endl;
- log << "beta: " << beta << std::endl;
- log << "material parameters: " << std::endl;
- log << "mu1: " << mu1 << "\nmu2: " << mu2 << std::endl;
-
-// auto muTerm = [mu1, mu2, theta] (const Domain& z) {
-//
-// // if (abs(z[0]) > (theta/2.0))
-// if (abs(z[0]) >= (theta/2.0))
-// return mu1;
-// else
-// return mu2;
-// };
-
- auto materialImp = IsotropicMaterialImp<dim>();
- auto muTerm = materialImp.getMu(parameterSet);
- auto muGridF = Dune::Functions::makeGridViewFunction(muTerm, gridView);
- auto muLocal = localFunction(muGridF);
-
-
- /////////////////////////////////////////////////////////
- // Stiffness matrix and right hand side vector
- /////////////////////////////////////////////////////////
- using Vector = BlockVector<FieldVector<double,1> >;
- using Matrix = BCRSMatrix<FieldMatrix<double,1,1> >;
- Matrix stiffnessMatrix;
- Vector b;
-
- /////////////////////////////////////////////////////////
- // Assemble the system
- /////////////////////////////////////////////////////////
- using namespace Functions::BasisFactory;
- Functions::BasisFactory::Experimental::PeriodicIndexSet periodicIndices;
-
- // Don't do the following in real life: It has quadratic run-time in the number of vertices.
- for (const auto& v1 : vertices(gridView))
- for (const auto& v2 : vertices(gridView))
- if (equivalent(v1.geometry().corner(0), v2.geometry().corner(0)))
- periodicIndices.unifyIndexPair({gridView.indexSet().index(v1)}, {gridView.indexSet().index(v2)});
-
- auto basis = makeBasis(gridView, Functions::BasisFactory::Experimental::periodic(lagrange<1>(), periodicIndices)); // flatLexicographic()?
-
-
- auto forceTerm = [](const FieldVector<double,dim>& x){return x[1];}; //2D-Version
- auto ForceGridF = Dune::Functions::makeGridViewFunction(forceTerm, gridView);
- auto ForceLocal = localFunction(ForceGridF);
-
- assemblePoissonProblem(basis, stiffnessMatrix, b, muLocal, forceTerm, gamma);
-// printmatrix(std::cout, stiffnessMatrix, "StiffnessMatrix", "--");
-// printvector(std::cout, b, "b", "--");
-
-
-
-
-
-
- ///////////////////////////
- // Compute solution
- ///////////////////////////
-
- Vector x(basis.size());
- x = b;
-
- std::cout << "------------ CG - Solver ------------" << std::endl;
- MatrixAdapter<Matrix, Vector, Vector> op(stiffnessMatrix);
-
-
-
- // Sequential incomplete LU decomposition as the preconditioner
- SeqILU<Matrix, Vector, Vector> ilu0(stiffnessMatrix,1.0);
- int iter = parameterSet.get<double>("iterations_CG", 999);
- // Preconditioned conjugate-gradient solver
- CGSolver<Vector> solver(op,
- ilu0, //NULL,
- 1e-8, // desired residual reduction factorlack
- iter, // maximum number of iterations
- 2); // verbosity of the solver
- InverseOperatorResult statistics;
- // Solve!
- solver.apply(x, b, statistics);
-
-// std::cout << "------------ GMRES - Solver ------------" << std::endl;
-// // Turn the matrix into a linear operator
-// MatrixAdapter<Matrix, Vector, Vector> op(stiffnessMatrix);
-//
-// // Fancy (but only) way to not have a preconditioner at all
-// Richardson<Vector,Vector> preconditioner(1.0);
-//
-// // Construct the iterative solver
-// RestartedGMResSolver<Vector> solver(
-// op, // Operator to invert
-// preconditioner, // Preconditioner
-// 1e-10, // Desired residual reduction factor
-// 500, // Number of iterations between restarts,
-// // here: no restarting
-// 500, // Maximum number of iterations
-// 2); // Verbosity of the solver
-//
-// // Object storing some statistics about the solving process
-// InverseOperatorResult statistics;
-//
-// // solve for different Correctors (alpha = 1,2,3)
-// solver.apply(x, b, statistics);
-//
-
-// -----------------------------------------------------------------------------------------------------
-
-
- using SolutionRange = double;
- auto solutionFunction = Functions::makeDiscreteGlobalBasisFunction<SolutionRange>(basis, x);
-
-
- // -------- PRINT OUTPUT --------
-// printvector(std::cout, x, "coeffVector", "--" );
- std::cout << "Gamma:" << gamma << std::endl;
- double mu_gamma = computeMuGamma(basis, x, gamma, muLocal, ForceLocal);
- std::cout << "mu_gamma:" << mu_gamma << std::endl;
- log << "----- OUTPUT: -----: " << std::endl;
- log << "mu_gamma=" << mu_gamma << std::endl;
- log << "q3=" << mu_gamma << std::endl;
-
-// std::cout.precision(10);
-// std::cout << "mu_gamma:" << std::fixed << mu_gamma << std::endl;
-
-
-
-// Vector zeroVec(basis.size());
-// zeroVec = 0;
-// std::cout << "TEST computeMuGamma:" << computeMuGamma(basis, zeroVec, gamma, muLocal, ForceLocal)<< std::endl;
- std::cout << " --- print analytic solutions(if possible) --- " << std::endl;
- if (imp == "analytical_Example")
+ /////////////////////////////////
+ // SET OUTPUT
+ /////////////////////////////////
+ std::string outputPath = parameterSet.get("outputPath", "/home/klaus/Desktop/DUNE/dune-microstructure/outputs");
+ std::fstream log;
+ log.open(outputPath + "/outputMuGamma.txt" ,std::ios::out);
+ std::cout << "outputPath:" << outputPath << std::endl;
+
+
+ //////////////////////////////////
+ // Generate the grid
+ //////////////////////////////////
+ constexpr int dim = 2;
+
+ // QUAD-GRID
+ FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0});
+ FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0});
+ // std::array<int, dim> nElements = {16,16};
+
+ std::array<int,2> nElements = parameterSet.get<std::array<int,2> >("nElements", {32,32});
+ std::cout << "Number of Elements in each direction: " << nElements << std::endl;
+ log << "Number of Elements in each direction: " << nElements << std::endl;
+
+
+ using CellGridType = YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
+ CellGridType grid_CE(lower,upper,nElements);
+ using GridView = CellGridType::LeafGridView;
+ const GridView gridView = grid_CE.leafGridView();
+ using Domain = GridView::Codim<0>::Geometry::GlobalCoordinate;
+
+ // ----------- INPUT PARAMETERS -----------------------------
+ std::string imp = parameterSet.get<std::string>("material_prestrain_imp", "parametrized_Laminate");
+ log << "material_prestrain used: "<< imp << std::endl;
+ double gamma = parameterSet.get<double>("gamma", 1.0);
+ double theta = parameterSet.get<double>("theta", 1.0/4.0);
+ double mu1 = parameterSet.get<double>("mu1", 1.0);
+ double beta = parameterSet.get<double>("beta", 2.0);
+ double mu2 = beta*mu1;
+ std::cout << "Gamma:" << gamma << std::endl;
+ std::cout << "Theta:" << theta << std::endl;
+ std::cout << "mu1:" << mu1 << std::endl;
+ std::cout << "mu2:" << mu2 << std::endl;
+ std::cout << "beta:" << beta << std::endl;
+ log << "----- Input Parameters -----: " << std::endl;
+ log << "gamma: " << gamma << std::endl;
+ log << "theta: " << theta << std::endl;
+ log << "beta: " << beta << std::endl;
+ log << "material parameters: " << std::endl;
+ log << "mu1: " << mu1 << "\nmu2: " << mu2 << std::endl;
+
+ // auto muTerm = [mu1, mu2, theta] (const Domain& z) {
+ //
+ // // if (abs(z[0]) > (theta/2.0))
+ // if (abs(z[0]) >= (theta/2.0))
+ // return mu1;
+ // else
+ // return mu2;
+ // };
+
+ auto materialImp = IsotropicMaterialImp<dim>();
+ auto muTerm = materialImp.getMu(parameterSet);
+ auto muGridF = Dune::Functions::makeGridViewFunction(muTerm, gridView);
+ auto muLocal = localFunction(muGridF);
+
+
+ /////////////////////////////////////////////////////////
+ // Stiffness matrix and right hand side vector
+ /////////////////////////////////////////////////////////
+ using Vector = BlockVector<FieldVector<double,1> >;
+ using Matrix = BCRSMatrix<FieldMatrix<double,1,1> >;
+ Matrix stiffnessMatrix;
+ Vector b;
+
+ /////////////////////////////////////////////////////////
+ // Assemble the system
+ /////////////////////////////////////////////////////////
+ using namespace Functions::BasisFactory;
+ Functions::BasisFactory::Experimental::PeriodicIndexSet periodicIndices;
+
+ // Don't do the following in real life: It has quadratic run-time in the number of vertices.
+ for (const auto& v1 : vertices(gridView))
+ for (const auto& v2 : vertices(gridView))
+ if (equivalent(v1.geometry().corner(0), v2.geometry().corner(0)))
+ periodicIndices.unifyIndexPair({gridView.indexSet().index(v1)}, {gridView.indexSet().index(v2)});
+
+ auto basis = makeBasis(gridView, Functions::BasisFactory::Experimental::periodic(lagrange<1>(), periodicIndices)); // flatLexicographic()?
+
+
+ auto forceTerm = [](const FieldVector<double,dim>& x){
+ return x[1];
+ }; //2D-Version
+ auto ForceGridF = Dune::Functions::makeGridViewFunction(forceTerm, gridView);
+ auto ForceLocal = localFunction(ForceGridF);
+
+ assemblePoissonProblem(basis, stiffnessMatrix, b, muLocal, forceTerm, gamma);
+ // printmatrix(std::cout, stiffnessMatrix, "StiffnessMatrix", "--");
+ // printvector(std::cout, b, "b", "--");
+
+
+
+
+
+
+ ///////////////////////////
+ // Compute solution
+ ///////////////////////////
+
+ Vector x(basis.size());
+ x = b;
+
+ std::cout << "------------ CG - Solver ------------" << std::endl;
+ MatrixAdapter<Matrix, Vector, Vector> op(stiffnessMatrix);
+
+
+
+ // Sequential incomplete LU decomposition as the preconditioner
+ SeqILU<Matrix, Vector, Vector> ilu0(stiffnessMatrix,1.0);
+ int iter = parameterSet.get<double>("iterations_CG", 999);
+ // Preconditioned conjugate-gradient solver
+ CGSolver<Vector> solver(op,
+ ilu0, //NULL,
+ 1e-8, // desired residual reduction factorlack
+ iter, // maximum number of iterations
+ 2); // verbosity of the solver
+ InverseOperatorResult statistics;
+ // Solve!
+ solver.apply(x, b, statistics);
+
+ // std::cout << "------------ GMRES - Solver ------------" << std::endl;
+ // // Turn the matrix into a linear operator
+ // MatrixAdapter<Matrix, Vector, Vector> op(stiffnessMatrix);
+ //
+ // // Fancy (but only) way to not have a preconditioner at all
+ // Richardson<Vector,Vector> preconditioner(1.0);
+ //
+ // // Construct the iterative solver
+ // RestartedGMResSolver<Vector> solver(
+ // op, // Operator to invert
+ // preconditioner, // Preconditioner
+ // 1e-10, // Desired residual reduction factor
+ // 500, // Number of iterations between restarts,
+ // // here: no restarting
+ // 500, // Maximum number of iterations
+ // 2); // Verbosity of the solver
+ //
+ // // Object storing some statistics about the solving process
+ // InverseOperatorResult statistics;
+ //
+ // // solve for different Correctors (alpha = 1,2,3)
+ // solver.apply(x, b, statistics);
+ //
+
+ // -----------------------------------------------------------------------------------------------------
+
+
+ using SolutionRange = double;
+ auto solutionFunction = Functions::makeDiscreteGlobalBasisFunction<SolutionRange>(basis, x);
+
+
+ // -------- PRINT OUTPUT --------
+ // printvector(std::cout, x, "coeffVector", "--" );
+ std::cout << "Gamma:" << gamma << std::endl;
+ double mu_gamma = computeMuGamma(basis, x, gamma, muLocal, ForceLocal);
+ std::cout << "mu_gamma:" << mu_gamma << std::endl;
+ log << "----- OUTPUT: -----: " << std::endl;
+ log << "mu_gamma=" << mu_gamma << std::endl;
+ log << "q3=" << mu_gamma << std::endl;
+
+ // std::cout.precision(10);
+ // std::cout << "mu_gamma:" << std::fixed << mu_gamma << std::endl;
+
+
+
+ // Vector zeroVec(basis.size());
+ // zeroVec = 0;
+ // std::cout << "TEST computeMuGamma:" << computeMuGamma(basis, zeroVec, gamma, muLocal, ForceLocal)<< std::endl;
+ std::cout << " --- print analytic solutions(if possible) --- " << std::endl;
+ if (imp == "analytical_Example")
+ {
+ std::cout<< "analytical_Example" << std::endl;
+ double q1 = ((mu1*mu2)/6.0)/(theta*mu1+ (1.0- theta)*mu2);
+ double q2 = ((1.0-theta)*mu1+theta*mu2)/6.0;
+ double hm = mu1*(beta/(theta+(1-theta)*beta)) *(1.0/6.0);
+ double am = mu1*((1-theta)+theta*beta) *(1.0/6.0);
+ std::cout << "q1 : " << q1 << std::endl;
+ std::cout << "q2 : " << q2 << std::endl;
+ std::cout << "q3 should be between q1 and q2" << std::endl;
+ std::cout << "hm : " << hm << std::endl;
+ std::cout << "am : " << am << std::endl;
+ if(mu_gamma > q2)
{
- std::cout<< "analytical_Example" << std::endl;
- double q1 = ((mu1*mu2)/6.0)/(theta*mu1+ (1.0- theta)*mu2);
- double q2 = ((1.0-theta)*mu1+theta*mu2)/6.0;
- double hm = mu1*(beta/(theta+(1-theta)*beta)) *(1.0/6.0);
- double am = mu1*((1-theta)+theta*beta) *(1.0/6.0);
- std::cout << "q1 : " << q1 << std::endl;
- std::cout << "q2 : " << q2 << std::endl;
- std::cout << "q3 should be between q1 and q2" << std::endl;
- std::cout << "hm : " << hm << std::endl;
- std::cout << "am : " << am << std::endl;
- if(mu_gamma > q2)
- {
- std::cout << "mu_gamma > q2!!.. (39) not satisfied" << std::endl;
- }
+ std::cout << "mu_gamma > q2!!.. (39) not satisfied" << std::endl;
}
- if (imp == "parametrized_Laminate")
+ }
+ if (imp == "parametrized_Laminate")
+ {
+ std::cout<< "parametrized_Laminate" << std::endl;
+ double hm = mu1*(beta/(theta+(1-theta)*beta));
+ double am = mu1*((1-theta)+theta*beta);
+ double q1 = (1.0/6.0)*hm;
+ double q2 = (1.0/6.0)*am;
+ std::cout << "q1 : " << q1 << std::endl;
+ std::cout << "q2 : " << q2 << std::endl;
+ std::cout << "q3 should be between q1 and q2" << std::endl;
+ std::cout << "hm : " << hm << std::endl;
+ std::cout << "am : " << am << std::endl;
+ if(mu_gamma > q2)
{
- std::cout<< "parametrized_Laminate" << std::endl;
- double hm = mu1*(beta/(theta+(1-theta)*beta));
- double am = mu1*((1-theta)+theta*beta);
- double q1 = (1.0/6.0)*hm;
- double q2 = (1.0/6.0)*am;
- std::cout << "q1 : " << q1 << std::endl;
- std::cout << "q2 : " << q2 << std::endl;
- std::cout << "q3 should be between q1 and q2" << std::endl;
- std::cout << "hm : " << hm << std::endl;
- std::cout << "am : " << am << std::endl;
- if(mu_gamma > q2)
- {
- std::cout << "mu_gamma > q2!!.. (39) not satisfied" << std::endl;
- }
+ std::cout << "mu_gamma > q2!!.. (39) not satisfied" << std::endl;
}
-
-
-
- std::cout << "beta : " << beta << std::endl;
- std::cout << "theta : " << theta << std::endl;
- std::cout << "Gamma : " << gamma << std::endl;
- std::cout << "mu_gamma:" << mu_gamma << std::endl;
-
-
- // Output result
-
- std::string VTKOutputName = outputPath + "/Compute_MuGamma-Result";
-
- VTKWriter<GridView> vtkWriter(gridView);
-// vtkWriter.addVertexData(x, "solution"); //--- Anpassen für P2
- vtkWriter.addVertexData(
- solutionFunction,
- VTK::FieldInfo("solution", VTK::FieldInfo::Type::scalar, 1));
-// VTK::FieldInfo("solution", VTK::FieldInfo::Type::vector, dim));
-
- vtkWriter.write( VTKOutputName );
- std::cout << "wrote data to file: " + VTKOutputName << std::endl;
-
-
-
- using VTKGridType = YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
- VTKGridType grid_VTK({-1.0/2.0, -1.0/2.0},{1.0/2.0, 1.0/2.0},{64,64});
- using GridViewVTK = VTKGridType::LeafGridView;
- const GridViewVTK gridView_VTK = grid_VTK.leafGridView();
-
- auto scalarP0FeBasis = makeBasis(gridView_VTK,lagrange<0>());
-
- std::vector<double> mu_CoeffP0;
- Functions::interpolate(scalarP0FeBasis, mu_CoeffP0, muTerm);
- auto mu_DGBF_P0 = Functions::makeDiscreteGlobalBasisFunction<double>(scalarP0FeBasis, mu_CoeffP0);
-
- VTKWriter<GridView> MaterialVtkWriter(gridView_VTK);
-
- MaterialVtkWriter.addCellData(
- mu_DGBF_P0,
- VTK::FieldInfo("mu_P0", VTK::FieldInfo::Type::scalar, 1));
-
- MaterialVtkWriter.write(outputPath + "/MaterialFunctions" );
- std::cout << "wrote data to file:" + outputPath + "/MaterialFunctions" << std::endl;
-
- log.close();
-
+ }
+
+
+
+ std::cout << "beta : " << beta << std::endl;
+ std::cout << "theta : " << theta << std::endl;
+ std::cout << "Gamma : " << gamma << std::endl;
+ std::cout << "mu_gamma:" << mu_gamma << std::endl;
+
+
+ // Output result
+
+ std::string VTKOutputName = outputPath + "/Compute_MuGamma-Result";
+
+ VTKWriter<GridView> vtkWriter(gridView);
+ // vtkWriter.addVertexData(x, "solution"); //--- Anpassen für P2
+ vtkWriter.addVertexData(
+ solutionFunction,
+ VTK::FieldInfo("solution", VTK::FieldInfo::Type::scalar, 1));
+ // VTK::FieldInfo("solution", VTK::FieldInfo::Type::vector, dim));
+
+ vtkWriter.write( VTKOutputName );
+ std::cout << "wrote data to file: " + VTKOutputName << std::endl;
+
+
+
+ using VTKGridType = YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
+ VTKGridType grid_VTK({-1.0/2.0, -1.0/2.0},{1.0/2.0, 1.0/2.0},{64,64});
+ using GridViewVTK = VTKGridType::LeafGridView;
+ const GridViewVTK gridView_VTK = grid_VTK.leafGridView();
+
+ auto scalarP0FeBasis = makeBasis(gridView_VTK,lagrange<0>());
+
+ std::vector<double> mu_CoeffP0;
+ Functions::interpolate(scalarP0FeBasis, mu_CoeffP0, muTerm);
+ auto mu_DGBF_P0 = Functions::makeDiscreteGlobalBasisFunction<double>(scalarP0FeBasis, mu_CoeffP0);
+
+ VTKWriter<GridView> MaterialVtkWriter(gridView_VTK);
+
+ MaterialVtkWriter.addCellData(
+ mu_DGBF_P0,
+ VTK::FieldInfo("mu_P0", VTK::FieldInfo::Type::scalar, 1));
+
+ MaterialVtkWriter.write(outputPath + "/MaterialFunctions" );
+ std::cout << "wrote data to file:" + outputPath + "/MaterialFunctions" << std::endl;
+
+ log.close();
+
}
diff --git a/src/macro-problem.cc b/src/macro-problem.cc
index 6e10eac924f89d57400e74dfb2e9bc248626b687..7c5388ecbb81c7cc2c810e20ae4120ae0a070f06 100644
--- a/src/macro-problem.cc
+++ b/src/macro-problem.cc
@@ -1,10 +1,8 @@
#include <config.h>
#include <signal.h>
#include <memory>
-
#include <fenv.h>
#include <array>
-
#include <math.h>
// Includes for the ADOL-C automatic differentiation library
@@ -13,7 +11,6 @@
#include <dune/fufem/utilities/adolcnamespaceinjections.hh>
#include <dune/common/typetraits.hh>
-
#include <dune/common/bitsetvector.hh>
#include <dune/common/parametertree.hh>
#include <dune/common/parametertreeparser.hh>
@@ -21,20 +18,22 @@
#include <dune/grid/uggrid.hh>
#include <dune/grid/utility/structuredgridfactory.hh>
+// #include <dune/alugrid/grid.hh>
+
#include <dune/grid/io/file/gmshreader.hh>
#include <dune/grid/io/file/vtk.hh>
#include <dune/functions/gridfunctions/discreteglobalbasisfunction.hh>
#include <dune/functions/gridfunctions/composedgridfunction.hh>
+#include <dune/functions/functionspacebases/cubichermitebasis.hh>
#include <dune/functions/functionspacebases/lagrangebasis.hh>
#include <dune/functions/functionspacebases/powerbasis.hh>
#include <dune/functions/functionspacebases/interpolate.hh>
-#include <dune/functions/functionspacebases/reducedcubichermitetrianglebasis.hh>
+// #include <dune/functions/functionspacebases/reducedcubichermitetrianglebasis.hh>
#include <dune/fufem/boundarypatch.hh>
#include <dune/fufem/functiontools/boundarydofs.hh>
#include <dune/fufem/dunepython.hh>
-
#include <dune/fufem/discretizationerror.hh>
#include <dune/solvers/solvers/iterativesolver.hh>
@@ -43,35 +42,42 @@
#include <dune/gfe/spaces/productmanifold.hh>
#include <dune/gfe/spaces/realtuple.hh>
#include <dune/gfe/spaces/rotation.hh>
-#include <dune/gfe/localdiscretekirchhoffbendingisometry.hh>
+// #include <dune/gfe/localdiscretekirchhoffbendingisometry.hh>
+// #include <dune/gfe/assemblers/localgeodesicfeadolcstiffness.hh>
+// #include <dune/gfe/assemblers/harmonicenergy.hh>
+// #include <dune/gfe/assemblers/geodesicfeassembler.hh>
+// #include <dune/gfe/bendingisometryhelper.hh>
+// #include <dune/gfe/riemannianpnsolver.hh>
+// #include <dune/gfe/embeddedglobalgfefunction.hh>
+// #include <dune/gfe/discretekirchhoffbendingenergy.hh>
+// #include <dune/gfe/energies/discretekirchhoffbendingenergyconforming.hh>
+// #include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewicz.hh>
+// #include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewiczprojected.hh>
+#include <dune/gfe/functions/discretekirchhoffbendingisometry.hh>
+#include <dune/gfe/functions/embeddedglobalgfefunction.hh>
+#include <dune/gfe/functions/localprojectedfefunction.hh>
#include <dune/gfe/assemblers/localgeodesicfeadolcstiffness.hh>
-#include <dune/gfe/assemblers/harmonicenergy.hh>
#include <dune/gfe/assemblers/geodesicfeassembler.hh>
+#include <dune/gfe/assemblers/discretekirchhoffbendingenergy.hh>
+#include <dune/gfe/assemblers/forceenergy.hh>
+#include <dune/gfe/assemblers/sumenergy.hh>
#include <dune/gfe/bendingisometryhelper.hh>
#include <dune/gfe/riemannianpnsolver.hh>
-#include <dune/gfe/embeddedglobalgfefunction.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergy.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyconforming.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewicz.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewiczprojected.hh>
+#include <dune/gfe/riemanniantrsolver.hh>
+#include <dune/microstructure/bendingisometryaddons.hh>
#include <dune/microstructure/energies/discretekirchhoffbendingenergyprestrained.hh>
#include <dune/microstructure/microproblem.hh>
-#include <dune/gfe/spaces/stiefelmanifold.hh>
+// #include <dune/gfe/spaces/stiefelmanifold.hh>
// #include <dune/gfe/spaces/stiefelmatrix.hh>
#include <dune/gmsh4/gmsh4reader.hh>
#include <dune/gmsh4/gridcreators/lagrangegridcreator.hh>
-//TEST
-#include <dune/gfe/riemanniantrsolver.hh>
-
-
-//TEST dune-vtk
// #include <dune/vtk/function.hh>
-#include <dune/vtk/vtkwriter.hh>
// #include <dune/vtk/vtkwriterbase.hh>
+#include <dune/vtk/vtkwriter.hh>
#include <dune/vtk/writers/unstructuredgridwriter.hh>
#include <dune/vtk/datacollectors/continuousdatacollector.hh>
#include <dune/vtk/datacollectors/discontinuousdatacollector.hh>
@@ -84,110 +90,16 @@ const int dim = 2;
using namespace Dune;
- // template <class T>
- // constexpr std::string_view type_name()
- // {
- // using namespace std;
- // #ifdef __clang__
- // string_view p = __PRETTY_FUNCTION__;
- // return string_view(p.data() + 34, p.size() - 34 - 1);
- // #elif defined(__GNUC__)
- // string_view p = __PRETTY_FUNCTION__;
- // # if __cplusplus < 201402
- // return string_view(p.data() + 36, p.size() - 36 - 1);
- // # else
- // return string_view(p.data() + 49, p.find(';', 49) - 49);
- // # endif
- // #elif defined(_MSC_VER)
- // string_view p = __FUNCSIG__;
- // return string_view(p.data() + 84, p.size() - 84 - 7);
- // #endif
- // }
-
-// struct Difference2
-// {
-
-// double operator()(Dune::FieldMatrix<double, 3, 2> x, Dune::FieldMatrix<double, 2, 2> I) const
-// {
-// return ((x.transposed()*x)-I).frobenius_norm();
-// }
-// };
-
-
-// // Wrapper for global-coordinate functions F
-// template <class GridView, class F>
-// class GlobalKirchhoffFunction
-// {
-// using Element = typename GridView::template Codim<0>::Entity;
-// using Geometry = typename Element::Geometry;
-
-// public:
-// GlobalKirchhoffFunction (GridView const& gridView, F const& f)
-// : gridView_(gridView)
-// , f_(f)
-// {}
-
-// void bind(Element const& element) {
-// geometry_.emplace(element.geometry());
-// f_.bind(element); // we need to bind kirchhoff function to the element
-// }
-// void unbind() { geometry_.reset(); }
-
-// auto operator() (typename Geometry::LocalCoordinate const& local) const
-// {
-// assert(!!geometry_);
-// return f_(geometry_->global(local));
-// }
-
-// private:
-// GridView gridView_;
-// F f_;
-// std::optional<Geometry> geometry_;
-// };
-
-// // Wrapper for global-coordinate functions F
-// template <class GridView, class F>
-// class GlobalFunction
-// {
-// using Element = typename GridView::template Codim<0>::Entity;
-// using Geometry = typename Element::Geometry;
-
-// public:
-// GlobalFunction (GridView const& gridView, F const& f)
-// : gridView_(gridView)
-// , f_(f)
-// {}
-
-// void bind(Element const& element) { geometry_.emplace(element.geometry()); }
-// void unbind() { geometry_.reset(); }
-
-// auto operator() (typename Geometry::LocalCoordinate const& local) const
-// {
-// assert(!!geometry_);
-// return f_(geometry_->global(local));
-// }
-
-// private:
-// GridView gridView_;
-// F f_;
-// std::optional<Geometry> geometry_;
-// };
-
-
-
int main(int argc, char *argv[])
{
/**
- * @brief We use this to catch a 'Floating point exception' caused by the 'innerSolver'
+ * @brief We use this to catch a 'Floating point exception' caused by the 'innerSolver'
* in RiemannianProximalNewton
*/
// std::shared_ptr<void(int)> handler(
// signal(SIGFPE, [](int signum) {throw std::logic_error("FPE"); }),
// [](__sighandler_t f) { signal(SIGFPE, f); });
-
-
-
// feenableexcept(FE_INVALID);
MPIHelper::instance(argc, argv);
@@ -200,9 +112,9 @@ int main(int argc, char *argv[])
Python::start();
auto pyMain = Python::main();
pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << argv[1] << "')" << std::endl;
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << argv[1] << "')" << std::endl;
auto pyModule = pyMain.import(argv[2]);
@@ -232,11 +144,19 @@ int main(int argc, char *argv[])
std::cout << "Executable: bending-isometries, with parameters:" << std::endl;
parameterSet.report();
+ bool PRINT_DEBUG = parameterSet.get<bool>("print_debug", 0);
+
/////////////////////////////////////////
// Create the grid
/////////////////////////////////////////
+ // Structured UG-grid
+ std::cout << "Using UGGrid module" << std::endl;
using GridType = UGGrid<dim>;
+ // ALUGrid with structuredGridFactory
+ // std::cout << "Using ALUGRID module" << std::endl;
+ // typedef Dune::ALUGrid<dim, dim, Dune::simplex, Dune::conforming> GridType;
+
std::shared_ptr<GridType> grid;
FieldVector<double,dim> lower(0), upper(1);
std::array<unsigned int,dim> elementsArray;
@@ -276,138 +196,87 @@ int main(int argc, char *argv[])
///////////////////////////////////////////////////////
// General coefficient vector of a Discrete Kirchhoff deformation function
- using VectorSpaceCoefficients = BlockVector<FieldVector<double,3>>;
+ using VectorSpaceCoefficients = BlockVector<FieldVector<double,3> >;
- /**
- * @brief Coefficient vector of a Discrete Kirchhoff deformation function that is constrained to be an isometry.
- * we need both 'double' and 'adouble' versions.
- */
- using Coefficient = GFE::ProductManifold<RealTuple<double,3>, Rotation<double,3> >;
+ // Coefficient vector of a Discrete Kirchhoff deformation function that is constrained to be an isometry.
+ // we need both 'double' and 'adouble' versions.
+ using Coefficient = GFE::ProductManifold<GFE::RealTuple<double,3>, GFE::Rotation<double,3> >;
using IsometryCoefficients = std::vector<Coefficient>;
using ACoefficient = typename Coefficient::template rebind<adouble>::other;
using AIsometryCoefficients = std::vector<ACoefficient>;
using namespace Functions::BasisFactory;
auto deformationBasis = makeBasis(gridView,
- power<3>(reducedCubicHermiteTriangle(),
- blockedInterleaved()));
+ power<3>(reducedCubicHermite(),
+ blockedInterleaved()));
using DeformationBasis = decltype(deformationBasis);
- /**
- * @brief The next basis is used to assign (nonlinear) degrees of freedom to the grid vertices.
- * The actual basis function values are never used.
- */
+ // The next basis is used to assign (nonlinear) degrees of freedom to the grid vertices.
+ // The actual basis function values are never used.
using CoefficientBasis = Functions::LagrangeBasis<GridView, 1>;
CoefficientBasis coefficientBasis(gridView);
// A basis for the tangent space (used to set DirichletNodes)
auto tangentBasis = makeBasis(gridView,
power<Coefficient::TangentVector::dimension>(
- lagrange<1>(),
- blockedInterleaved()));
-
-
- //TEST
- // auto tangentBasis = makeBasis(gridView,
- // power<Coefficient::TangentVector::dimension>( //dim = 6
- // lagrange<1>(),
- // flatInterleaved()));
+ lagrange<1>(),
+ blockedInterleaved()));
std::cout << "Coefficient::TangentVector::dimension: " << Coefficient::TangentVector::dimension<< std::endl;
- // Print some information on the grid and degrees of freedom.
+ // Print some information on the grid and degrees of freedom.
std::cout << "Number of Elements in the grid: " << gridView.size(0)<< std::endl;
std::cout << "Number of Nodes in the grid: " << gridView.size(dim)<< std::endl;
std::cout << "deformationBasis.size(): " << deformationBasis.size() << std::endl;
std::cout << "deformationBasis.dimension(): " << deformationBasis.dimension() << std::endl;
std::cout << "Degrees of Freedom: " << deformationBasis.dimension() << std::endl;
- bool PRINT_DEBUG = parameterSet.get<bool>("print_debug", 0);
///////////////////////////////////////////
- // Read Dirichlet values
+ // Read Dirichlet values
///////////////////////////////////////////
- BitSetVector<1> dirichletVertices(gridView.size(dim), false);
+ // BitSetVector<1> dirichletVertices(gridView.size(dim), false);
const typename GridView::IndexSet &indexSet = gridView.indexSet();
-
-
BitSetVector<Coefficient::TangentVector::dimension> dirichletNodes(tangentBasis.size(), false); //tangentBasis.size()=coefficientBasis.size()
- /**
- * @brief Make Python function that computes which vertices are on the Dirichlet boundary,
- * based on the vertex positions.
- */
+ // Make Python function that computes which vertices are on the Dirichlet boundary,
+ // based on the vertex positions.
auto dirichletIndicatorFunction = Python::make_function<bool>(pyModule.get("dirichlet_indicator"));
- /**
- * @brief If we want to clamp DOFs inside the domain, we connot use 'BoundaryPatch'
- * and 'constructBoundaryDofs'. This is a workaround for now.
- *
- *
- */
+ // If we want to clamp DOFs inside the domain, we cannot use 'BoundaryPatch'
+ // and 'constructBoundaryDofs'. This is a workaround for now.
for (auto &&vertex : vertices(gridView))
{
- dirichletVertices[indexSet.index(vertex)] = dirichletIndicatorFunction(vertex.geometry().corner(0));
+ // dirichletVertices[indexSet.index(vertex)] = dirichletIndicatorFunction(vertex.geometry().corner(0));
- if(dirichletIndicatorFunction(vertex.geometry().corner(0)))
- {
- dirichletNodes[indexSet.index(vertex)] = true;
- if(PRINT_DEBUG)
- std::cout << "Dirichlet Vertex with coordinates:" << vertex.geometry().corner(0) << std::endl;
- }
-
- }
-
- // std::cout << "tangentBasis.size():" << tangentBasis.size() << std::endl;
- // std::cout << "coefficientBasis.size():" << coefficientBasis.size() << std::endl;
+ if(dirichletIndicatorFunction(vertex.geometry().corner(0)))
+ {
+ dirichletNodes[indexSet.index(vertex)] = true;
+ if(PRINT_DEBUG)
+ std::cout << "Dirichlet Vertex with coordinates:" << vertex.geometry().corner(0) << std::endl;
+ }
- //deprecated:
+ }
+ // deprecated:
// BoundaryPatch<GridView> dirichletBoundary(gridView, dirichletVertices);
// constructBoundaryDofs(dirichletBoundary, tangentBasis, dirichletNodes);
-
-
-
-
- // --------------------------------------
-
-
-
-
- // markBoundaryPatchDofs(dirichletBoundary, tangentBasis, dirichletNodes);
-
- //TEST with blocksize?
- // constructBoundaryDofs<GridView,decltype(tangentBasis),Coefficient::TangentVector::dimension>(dirichletBoundary, tangentBasis, dirichletNodes);
- // constructBoundaryDofs<GridView,decltype(tangentBasis),Coefficient::TangentVector::dimension>(dirichletBoundary, tangentBasis, dirichletNodes);
-
-
-
- //TEST: print dirichletNodes
- // std::cout << "print dirichletVertices:" << std::endl;
- // std::cout << dirichletVertices << std::endl;
-
- // std::cout << "print dirichletNodes:" << std::endl;
- // std::cout << dirichletNodes << std::endl;
-
-
///////////////////////////////////////////
// Get initial Iterate
///////////////////////////////////////////
auto pythonInitialIterate = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("f"), pyModule.get("df"));
-
VectorSpaceCoefficients x(deformationBasis.size());
- interpolate(deformationBasis, x, pythonInitialIterate);
-
+ interpolate(deformationBasis, x, pythonInitialIterate);
- /**
+ /**
* @brief TEST: Add boundary-value function
- *
+ *
*/
// auto boundaryValueFunction = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,3>)>(pyModule.get("boundaryValues"), pyModule.get("boundaryValuesDerivative"));
// auto boundaryValueFunction = Python::make_function<FieldVector<double,3>>(pyModule.get("boundaryValues"));
@@ -416,57 +285,67 @@ int main(int argc, char *argv[])
// {
// if(dirichletIndicatorFunction(vertex.geometry().corner(0)))
// {
- // isometryCoefficients[indexSet.index(vertex)][_0] = (RealTuple<double, 3>)boundaryValueFunction(vertex.geometry().corner(0));
+ // isometryCoefficients[indexSet.index(vertex)][_0] = (GFE::RealTuple<double, 3>)boundaryValueFunction(vertex.geometry().corner(0));
// // isometryCoefficients[indexSet.index(vertex)][_1].set(derivative(boundaryValueFunction)(vertex.geometry().corner(0)));
- // isometryCoefficients_adouble[indexSet.index(vertex)][_0] = (RealTuple<adouble, 3>)boundaryValueFunction(vertex.geometry().corner(0));
+ // isometryCoefficients_adouble[indexSet.index(vertex)][_0] = (GFE::RealTuple<adouble, 3>)boundaryValueFunction(vertex.geometry().corner(0));
// // isometryCoefficients_adouble[indexSet.index(vertex)][_1].set(derivative(boundaryValueFunction)(vertex.geometry().corner(0)));
// }
// }
-
- /**
- * @brief We need to setup LocalDiscreteKirchhoffBendingIsometry with a coefficient
- * vector of ctype 'adouble' while the solver gets a coefficient vector
- * of ctype 'double'.
- */
+
+ // We need to setup DiscreteKirchhoffBendingIsometry with a coefficient
+ // vector of ctype 'adouble' while the solver gets a coefficient vector
+ // of ctype 'double'.
IsometryCoefficients isometryCoefficients(coefficientBasis.size());
AIsometryCoefficients isometryCoefficients_adouble(coefficientBasis.size());
+ using namespace Dune::GFE::Impl;
- /**
- * @brief Copy the current iterate into a data type that encapsulates the isometry constraint
- * i. e. convert coefficient data structure from 'VectorSpaceCoefficients' to 'IsometryCoefficients'
- */
+ // Copy the current iterate into a data type that encapsulates the isometry constraint
+ // i.e. convert coefficient data structure from 'VectorSpaceCoefficients' to 'IsometryCoefficients'
vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients);
vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients_adouble);
-
- /**
- * @brief TEST: conversion of coefficient vectors (back & forth)
- */
- coefficientConversionTest<VectorSpaceCoefficients, DeformationBasis, CoefficientBasis, IsometryCoefficients>(x, deformationBasis, coefficientBasis);
+ // Debug: conversion of coefficient vectors (back & forth)
+ // coefficientConversionTest<VectorSpaceCoefficients, DeformationBasis, CoefficientBasis, IsometryCoefficients>(x, deformationBasis, coefficientBasis);
-
-
- using LocalDKFunction = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, AIsometryCoefficients>;
+ // Create a DiscreteKirchhoffBendingIsometry.
+ // This serves as the deformation function.
+ using LocalDKFunction = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, AIsometryCoefficients>;
LocalDKFunction localDKFunction(deformationBasis, coefficientBasis, isometryCoefficients_adouble);
- /**
- * @brief TEST: check isometry condition on the nodes of the grid for initial deformation.
- */
- // auto initialDeformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x);
- // nodewiseIsometryTest(initialDeformationFunction);
+ // Debug: check isometry condition on the nodes of the grid for initial deformation.
nodewiseIsometryTest(localDKFunction, gridView);
+ // auto initialDeformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x);
+ // nodewiseIsometryTest(initialDeformationFunction);
- /**
- * @brief Read force term.
- */
- auto pythonForce = Python::make_function<FieldVector<double,3>>(pyModule.get("force"));
+ // Read the force term.
+ auto pythonForce = Python::make_function<FieldVector<double,3> >(pyModule.get("force"));
auto forceGVF = Dune::Functions::makeGridViewFunction(pythonForce, gridView);
auto localForce = localFunction(forceGVF);
+
+ //*** NEW UPDATED VERSION **/
+
+ // Setup nonconforming energy and assembler - only option for this minimal example.
+ // auto forceEnergy = std::make_shared<GFE::ForceEnergy<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient> >(localDKFunction, localForce);
+ // auto localEnergy_nonconforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergy<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient> >(localDKFunction);
+
+ // auto sumEnergy = std::make_shared<GFE::SumEnergy<CoefficientBasis, GFE::RealTuple<adouble,3>, GFE::Rotation<adouble,3> > >();
+ // sumEnergy->addLocalEnergy(localEnergy_nonconforming);
+ // sumEnergy->addLocalEnergy(forceEnergy);
+
+ // auto localGFEADOLCStiffness_nonconforming= std::make_shared<Dune::GFE::LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> >(sumEnergy);
+ // std::shared_ptr<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> > assembler_prestrain;
+ // assembler_prestrain = std::make_shared<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> >(coefficientBasis, localGFEADOLCStiffness_nonconforming);
+
+ // --------------------------------------------
+
+
+
+
// /**
// * @brief Read effective prestrain Tensor
// */
@@ -477,7 +356,7 @@ int main(int argc, char *argv[])
// /**
// * @brief Get effective quadratic form Qhom
- // *
+ // *
// * input-vector: [q_1,q_2,q_3,q_12,q_13,q_23]
// * is assembled into a matrix where the off-diagonal entries are divided by 2 (compare with definition in the paper)
// * ( q_1 , 0.5*q_12 , 0.5*q_13 )
@@ -485,7 +364,7 @@ int main(int argc, char *argv[])
// * ( 0.5*q_13 , 0.5*q_23 , q_3 )
// */
// Dune::FieldVector<adouble,6> Qhomvec = parameterSet.get<Dune::FieldVector<adouble,6>>("effectiveQuadraticForm", {1.0, 1.0, 1.0, 0.0, 0.0, 0.0});
- // Dune::FieldMatrix<adouble,3,3> Qhom = {{(adouble)Qhomvec[0], (adouble)0.5*Qhomvec[3], (adouble)0.5*Qhomvec[4]},
+ // Dune::FieldMatrix<adouble,3,3> Qhom = {{(adouble)Qhomvec[0], (adouble)0.5*Qhomvec[3], (adouble)0.5*Qhomvec[4]},
// {(adouble)0.5*Qhomvec[3], (adouble)Qhomvec[1], (adouble)0.5*Qhomvec[5]},
// {(adouble)0.5*Qhomvec[4], (adouble)0.5*Qhomvec[5], (adouble)Qhomvec[2]}};
// printmatrix(std::cout, Qhom, "effective quadratic form (Qhom): ", "--");
@@ -507,101 +386,89 @@ int main(int argc, char *argv[])
* @brief Setup energy featuring prestrain
*/
// auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce, Qhom, effectivePrestrain, parameterSet);
- auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce, parameterSet, pyModule);
+
+
+
// LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_conforming(localEnergy_conforming.get());
// LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_nonconforming(localEnergy_nonconforming.get());
- LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_prestrain(localEnergy_prestrain.get());
+ // LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_prestrain(localEnergy_prestrain.get());
// GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_conforming(coefficientBasis, localGFEADOLCStiffness_conforming);
// GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_nonconforming(coefficientBasis, localGFEADOLCStiffness_nonconforming);
- GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_prestrain(coefficientBasis, localGFEADOLCStiffness_prestrain);
+ // GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_prestrain(coefficientBasis, localGFEADOLCStiffness_prestrain);
+
+
+
+
+
+
+ // // Setup prestrained bending energy.
+ // auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient> >(localDKFunction, localForce, parameterSet, pyModule);
+ // auto localGFEADOLCStiffness_prestrain = std::make_shared<Dune::GFE::LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> >(localEnergy_prestrain);
+ // std::shared_ptr<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> > assembler_prestrain;
+ // assembler_prestrain = std::make_shared<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> >(coefficientBasis, localGFEADOLCStiffness_prestrain);
+
+
+ // Setup nonconforming energy and assembler - only option for this minimal example.
+ // The energy consists of two parts: 1. A bending energy contribution and 2. Contribution from a force term.
+ auto sumEnergy = std::make_shared<GFE::SumEnergy<CoefficientBasis, GFE::RealTuple<adouble,3>, GFE::Rotation<adouble,3> > >();
+
+ // Setup prestrained bending energy.
+ auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, ACoefficient> >(localDKFunction, parameterSet, pyModule);
+
+ // Setup force energy.
+ auto forceEnergy = std::make_shared<GFE::ForceEnergy<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient> >(localDKFunction, localForce);
+ sumEnergy->addLocalEnergy(localEnergy_prestrain);
+ sumEnergy->addLocalEnergy(forceEnergy);
+
+ // Setup the assembler.
+ auto localGFEADOLCStiffness_prestrain = std::make_shared<Dune::GFE::LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> >(sumEnergy);
+ std::shared_ptr<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> > assembler_prestrain;
+ assembler_prestrain = std::make_shared<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> >(coefficientBasis, localGFEADOLCStiffness_prestrain);
/**
- * @brief Create a solver:
- * - Riemannian Newton with Hessian modification
- * - Riemannian Trust-region
+ * @brief Create a solver:
+ * - Adaptively Regularized Riemannian Newton (ARRN) [default]
+ * - Riemannian Trust-region (RTR)
*/
- RiemannianProximalNewtonSolver<CoefficientBasis, Coefficient> RNHMsolver;
- RiemannianTrustRegionSolver<CoefficientBasis, Coefficient> RTRsolver;
+ Dune::GFE::RiemannianProximalNewtonSolver<CoefficientBasis, Coefficient> ARRNsolver;
+ Dune::GFE::RiemannianTrustRegionSolver<CoefficientBasis, Coefficient> RTRsolver;
- std::string Solver_name = parameterSet.get<std::string>("Solver", "RNHM");
+ std::string Solver_name = parameterSet.get<std::string>("Solver", "ARRN");
double numerical_energy; //final discrete energy
- if(Solver_name == "RNHM")
+ if(Solver_name == "ARRN")
{
-
- RNHMsolver.setup(*grid,
- &assembler_prestrain,
- isometryCoefficients,
- dirichletNodes,
- parameterSet);
-
- RNHMsolver.solve();
- isometryCoefficients = RNHMsolver.getSol();
- numerical_energy = RNHMsolver.getStatistics().finalEnergy;
+ std::cout << "Using Adaptively Regularized Riemannian Newton (ARRN) method for energy minimization." << std::endl;
+ ARRNsolver.setup(*grid,
+ &(*assembler_prestrain),
+ isometryCoefficients,
+ dirichletNodes,
+ parameterSet);
+
+ ARRNsolver.solve();
+ isometryCoefficients = ARRNsolver.getSol();
+ numerical_energy = ARRNsolver.getStatistics().finalEnergy;
} else if (Solver_name =="RiemannianTR")
{
std::cout << "Using Riemannian Trust-region method for energy minimization." << std::endl;
RTRsolver.setup(*grid,
- &assembler_prestrain,
- isometryCoefficients,
- dirichletNodes,
- parameterSet);
+ &(*assembler_prestrain),
+ isometryCoefficients,
+ dirichletNodes,
+ parameterSet);
RTRsolver.solve();
isometryCoefficients = RTRsolver.getSol();
numerical_energy = RTRsolver.getStatistics().finalEnergy;
- } else
- DUNE_THROW(Dune::Exception, "Unknown Solver type for bending isometries.");
-
-
-
- // TEST
- // RiemannianTrustRegionSolver<CoefficientBasis, Coefficient> solver;
- // solver.setup(*grid,
- // &assembler_prestrain,
- // isometryCoefficients,
- // dirichletNodes,
- // parameterSet);
- // RNHMsolver.setup(*grid,
- // &assembler_prestrain,
- // isometryCoefficients,
- // dirichletNodes,
- // parameterSet);
-
-
-
-//deprecated:
- // if (parameterSet.get<bool>("prestrainFlag", 0))
- // solver.setup(*grid,
- // &assembler_prestrain,
- // isometryCoefficients,
- // dirichletNodes,
- // parameterSet);
- // else if (parameterSet.get<bool>("conforming_DiscreteJacobian", 1))
- // solver.setup(*grid,
- // &assembler_conforming,
- // isometryCoefficients,
- // dirichletNodes,
- // parameterSet);
- // else
- // solver.setup(*grid,
- // &assembler_nonconforming,
- // isometryCoefficients,
- // dirichletNodes,
- // parameterSet);
-
- ///////////////////////////////////////////////////////
- // Solve!
- ///////////////////////////////////////////////////////
- // solver.setInitialIterate(isometryCoefficients);
-
+ } else
+ DUNE_THROW(Dune::Exception, "Unknown Solver type for bending isometries.");
// Convert coefficient data structure from 'IsometryCoefficients' to 'VectorSpaceCoefficients'
@@ -612,19 +479,19 @@ int main(int argc, char *argv[])
// Output result
////////////////////////////////
std::string baseNameDefault = "bending-isometries-";
- std::string baseName = parameterSet.get("baseName", baseNameDefault);
+ std::string baseName = parameterSet.get("baseName", baseNameDefault);
std::string resultFileName = parameterSet.get("resultPath", "")
- + "/" + baseName
- + "_level" + std::to_string(parameterSet.get<int>("macroGridLevel"));
+ + "/" + baseName
+ + "_level" + std::to_string(parameterSet.get<int>("macroGridLevel"));
if (parameterSet.get<bool>("conforming_DiscreteJacobian", 1))
resultFileName = resultFileName + "_C";
- else
+ else
resultFileName = resultFileName + "_NC";
// Create a deformation function but this time with double-types.
- using LocalDKFunctionD = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
+ using LocalDKFunctionD = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
LocalDKFunctionD localDKFunctionDouble(deformationBasis, coefficientBasis, isometryCoefficients);
@@ -632,8 +499,7 @@ int main(int argc, char *argv[])
if (parameterSet.get<bool>("writeVTK", 1))
{
- std::cout << "write VTK..." << std::endl;
- std::cout << "to Filename: " << resultFileName << std::endl;
+ std::cout << "write VTK to Filename: " << resultFileName << std::endl;
/**
* @brief Compute the displacement from the deformation.
@@ -643,27 +509,23 @@ int main(int argc, char *argv[])
IdentityGridEmbedding<double> identityGridEmbedding;
interpolate(deformationBasis, identity, identityGridEmbedding);
- // auto identity_tmp = identity;
-
// Compute the displacement
auto displacement = x_out;
displacement -= identity;
// std::cout << "displacement.size():" << displacement.size() << std::endl;
- auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x_out);
- auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, displacement);
+ auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, x_out);
+ auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, displacement);
- /**
- * @brief We need to subsample, because VTK cannot natively display real third-order functions
- */
- int subsamplingRefinement = parameterSet.get<int>("subsamplingRefinement", 2);
- SubsamplingVTKWriter<GridView> vtkWriter(gridView, Dune::refinementLevels(subsamplingRefinement));
- // SubsamplingVTKWriter<GridView> vtkWriter(gridView, Dune::refinementLevels(2));
+
+ // We need to subsample, because dune-grid-VTK cannot natively display real third-order functions
+ // int subsamplingRefinement = parameterSet.get<int>("subsamplingRefinement", 2);
+ // SubsamplingVTKWriter<GridView> vtkWriter(gridView, Dune::refinementLevels(subsamplingRefinement));
// Use VTK writer from dune-vtk
- // Setup a DataCollector of order 4.
- Dune::Vtk::LagrangeDataCollector<GridView, 4> lagrangeDataCollector(gridView);
+ // Setup a DataCollector of order 3.
+ Dune::Vtk::LagrangeDataCollector<GridView, 3> lagrangeDataCollector(gridView);
Dune::Vtk::DiscontinuousDataCollector<GridView> discontinuousDataCollector(gridView);
Dune::Vtk::UnstructuredGridWriter duneVTKwriter(lagrangeDataCollector, Dune::Vtk::FormatTypes::ASCII, Vtk::DataTypes::FLOAT32);
// Dune::Vtk::UnstructuredGridWriter writer(discontinuousDataCollector, Dune::Vtk::FormatTypes::ASCII, Vtk::DataTypes::FLOAT32);
@@ -671,19 +533,12 @@ int main(int argc, char *argv[])
/**
* @brief Basis used to represent normal vector fields (deprecated)
- *
+ *
*/
- // auto normalBasis = makeBasis(gridView,
- // power<3>(
- // lagrange<1>(),
- // flatLexicographic()));
-
// Write discrete displacement
duneVTKwriter.addPointData(displacementFunction, Dune::Vtk::FieldInfo{"Displacement dune-VTK",3, Vtk::RangeTypes::VECTOR});
- vtkWriter.addVertexData(displacementFunction, VTK::FieldInfo("Displacement", VTK::FieldInfo::Type::vector, 3));
-
-
+ // vtkWriter.addVertexData(displacementFunction, VTK::FieldInfo("Displacement", VTK::FieldInfo::Type::vector, 3));
// ComposedGridFunction - approach:
auto deformationGradientFunction = derivative(deformationFunction);
@@ -694,14 +549,13 @@ int main(int argc, char *argv[])
FieldMatrix<double,2,2> I = ScaledIdentityMatrix<double,2>(1);
auto isometryErrorFunction =[&](auto M)-> double {
- return ((M.transposed()*M) - I).frobenius_norm();
- };
+ return ((M.transposed()*M) - I).frobenius_norm();
+ };
auto isometryErrorGridFunction = makeComposedGridFunction(isometryErrorFunction,deformationGradientFunction);
-
duneVTKwriter.addPointData(isometryErrorGridFunction, "IsometryErrorFunction");
- vtkWriter.addVertexData(isometryErrorGridFunction , VTK::FieldInfo("IsometryErrorFunction", VTK::FieldInfo::Type::scalar, 1));
-
+ // vtkWriter.addVertexData(isometryErrorGridFunction , VTK::FieldInfo("IsometryErrorFunction", VTK::FieldInfo::Type::scalar, 1));
+
@@ -713,7 +567,7 @@ int main(int argc, char *argv[])
{
// auto pythonAnalyticalSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("u"), pyModule.get("du"));
auto pythonAnalyticalSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("displacement"), pyModule.get("displacementGradient"));
- vtkWriter.addVertexData((pythonAnalyticalSolution), VTK::FieldInfo("Displacement_analytical", VTK::FieldInfo::Type::vector, 3));
+ // vtkWriter.addVertexData((pythonAnalyticalSolution), VTK::FieldInfo("Displacement_analytical", VTK::FieldInfo::Type::vector, 3));
//dune-vtk:
auto pythonAnalyticalSolutionGVF = Dune::Functions::makeAnalyticGridViewFunction(pythonAnalyticalSolution ,gridView);
@@ -721,163 +575,108 @@ int main(int argc, char *argv[])
-
+
/**
- * @brief Get the normal vector field of the surface parametrized
+ * @brief Get the normal vector field of the surface parametrized
* by the analytical solution.
* - We represent the normal vector in a first order Lagrange-Power basis ('normalBasis').
*/
if (parameterSet.get<bool>("vtkWrite_analyticalSurfaceNormal", 0))
{
- // Get the surface normal function.
- auto pythonSurfaceNormal = Python::make_function<FieldVector<double,3>>(pyModule.get("surfaceNormal"));
- vtkWriter.addVertexData(pythonSurfaceNormal, VTK::FieldInfo("SurfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
-
+ // Get the surface normal function.
+ auto pythonSurfaceNormal = Python::make_function<FieldVector<double,3> >(pyModule.get("surfaceNormal"));
+ // vtkWriter.addVertexData(pythonSurfaceNormal, VTK::FieldInfo("SurfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
- //dune-vtk
- auto pythonSurfaceNormalGVF = Dune::Functions::makeAnalyticGridViewFunction(pythonSurfaceNormal ,gridView);
- duneVTKwriter.addPointData(pythonSurfaceNormalGVF, Dune::Vtk::FieldInfo{"SurfaceNormal_analytical dune-VTK",3, Dune::Vtk::RangeTypes::VECTOR});
+ //dune-vtk
+ auto pythonSurfaceNormalGVF = Dune::Functions::makeAnalyticGridViewFunction(pythonSurfaceNormal ,gridView);
+ duneVTKwriter.addPointData(pythonSurfaceNormalGVF, Dune::Vtk::FieldInfo{"SurfaceNormal_analytical dune-VTK",3, Dune::Vtk::RangeTypes::VECTOR});
}
}
- //-------------------------------------------------------------------------------------
+ //-------------------------------------------------------------------------------------
// /**
- // * @brief: Compute the discrete normal vector of the surface parametrized
+ // * @brief: Compute the discrete normal vector of the surface parametrized
// * by the discrete solution.
// */
auto discreteSurfaceNormalField = [](auto M) -> Dune::FieldVector<double,3> {
- return {M[1][0]*M[2][1] - M[1][1]*M[2][0],
- M[2][0]*M[0][1] - M[0][0]*M[2][1],
- M[0][0]*M[1][1] - M[1][0]*M[0][1]};
- };
+ return {M[1][0]*M[2][1] - M[1][1]*M[2][0],
+ M[2][0]*M[0][1] - M[0][0]*M[2][1],
+ M[0][0]*M[1][1] - M[1][0]*M[0][1]};
+ };
auto discreteSurfaceNormalFieldGVF = makeComposedGridFunction(discreteSurfaceNormalField ,deformationGradientFunction);
-
- vtkWriter.addVertexData(discreteSurfaceNormalFieldGVF, VTK::FieldInfo("SurfaceNormalDiscrete", VTK::FieldInfo::Type::vector, 3));
+ // vtkWriter.addVertexData(discreteSurfaceNormalFieldGVF, VTK::FieldInfo("SurfaceNormalDiscrete", VTK::FieldInfo::Type::vector, 3));
duneVTKwriter.addPointData(discreteSurfaceNormalFieldGVF, Dune::Vtk::FieldInfo{"SurfaceNormalDiscrete",3, Dune::Vtk::RangeTypes::VECTOR});
-
- /**
- * @brief deprecated version using interpolation:
- *
- */
- // auto surfaceNormalDiscreteCoefficients = computeDiscreteSurfaceNormal(localDKFunctionDouble, normalBasis); (deprecated)
- //
-
- // // Create DiscreteGlobalBasisFunctions.
- // auto surfaceNormalDiscrete = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(normalBasis, surfaceNormalDiscreteCoefficients);
-
- // vtkWriter.addVertexData(surfaceNormalDiscrete , VTK::FieldInfo("surfaceNormal_discrete", VTK::FieldInfo::Type::vector, 3));
- // vtkWriter.write(resultFileName);
-
-
-
-
- // duneVTKwriter.addPointData(surfaceNormalDiscrete, Dune::Vtk::FieldInfo{"surfaceNormal_discrete dune-VTK",3, Vtk::RangeTypes::VECTOR});
-
- // std::cout << "written discrete Surface Normal Old" << std::endl;
//-------------------------------------------------------------------------------------
- vtkWriter.write(resultFileName);
- duneVTKwriter.write(resultFileName + "_DuneVTK");
+ // vtkWriter.write(resultFileName);
+ // duneVTKwriter.write(resultFileName + "_DuneVTK");
+ duneVTKwriter.write(resultFileName);
}
- /**
- * @brief Measure errors.
- * 1. Compute the Isometry-Error
- * 2. Compute the L2-Error and H1-SemiError as well as the energy difference
- * between the discrete deformation u_h and the analytical deformation u .
- */
- if (parameterSet.get<bool>("measure_isometryError", 0))
- auto isometry_errors = isometryError(localDKFunctionDouble, gridView);
- if (parameterSet.get<bool>("measure_analyticalError", 0))
- {
- auto discretization_errors = measureAnalyticalError(localDKFunctionDouble,gridView,pyModule);
-
-
- /**
- * @brief Check Quantities
- *
- */
- // L2 - Discretization error
- // if(discretization_errors[0] > 1.0)
- // {
- // std::cerr << std::setprecision(9);
- // std::cerr << "L2-error is to large! " << std::endl;
- // return 1;
- // }
- // // H1(semi) - Discretization error
- // if(discretization_errors[1] > 1.0)
- // {
- // std::cerr << std::setprecision(9);
- // std::cerr << "H1-error is to large! " << std::endl;
- // return 1;
- // }
- }
-
+ /**
+ * @brief Measure errors.
+ * 1. Compute the Isometry-Error
+ * 2. Compute the L2-Error and H1-SemiError as well as the energy difference
+ * between the discrete deformation u_h and the analytical deformation u .
+ */
+ if (parameterSet.get<bool>("measure_isometryError", 0))
+ auto isometry_errors = isometryError(localDKFunctionDouble, gridView);
+ if (parameterSet.get<bool>("measure_analyticalError", 0))
+ {
+ auto discretization_errors = measureAnalyticalError(localDKFunctionDouble,gridView,pyModule);
+
+ std::cout << "L2-Error: " << discretization_errors[0] << std::endl;
+ std::cout << "H1-Error: " << discretization_errors[1] << std::endl;
/**
- * @brief Write Energy values.
- *
+ * @brief Check Quantities
+ *
*/
-
- std::cout << "(Final) Energy of discrete solution: " << numerical_energy<< std::endl;
- if (parameterSet.get<bool>("compare_EnergyValues", 0))
- {
- auto analytical_energy = parameterSet.get<double>("analytical_energy");
- auto energy_difference = analytical_energy - numerical_energy;
- std::cout << "Analytical energy: " << analytical_energy<< std::endl;
- std::cout << "Energy difference: " << energy_difference << std::endl;
-
- // if(energy_difference > 1.0)
- // {
- // std::cerr << std::setprecision(9);
- // std::cerr << "Energy difference: " << energy_difference << " is to large! " << std::endl;
- // return 1;
- // }
- }
-
- // // Write the corresponding coefficient vector: verbatim in binary, to be completely lossless
- // char iFilename[200];
- // sprintf(iFilename, (resultFileName + ".data").c_str());
-
- // FILE* fpIterate = fopen(iFilename, "wb");
- // if (!fpIterate)
- // DUNE_THROW(SolverError, "Couldn't open file " << iFilename << " for writing");
-
- // for (size_t j=0; j<isometryCoefficients.size(); j++)
- // fwrite(&isometryCoefficients[j], sizeof(Coefficient), 1, fpIterate);
-
- // fclose(fpIterate);
-
+ // L2 - Discretization error
+ // if(discretization_errors[0] > 1.0)
+ // {
+ // std::cerr << std::setprecision(9);
+ // std::cerr << "L2-error is to large! " << std::endl;
+ // return 1;
+ // }
+ // // H1(semi) - Discretization error
+ // if(discretization_errors[1] > 1.0)
+ // {
+ // std::cerr << std::setprecision(9);
+ // std::cerr << "H1-error is to large! " << std::endl;
+ // return 1;
+ // }
+ }
- #if 0
- // Write the corresponding coefficient vector: verbatim in binary, to be completely lossless
- typedef BlockVector<typename Coefficient::CoordinateType> EmbeddedVectorType;
- EmbeddedVectorType xEmbedded(isometryCoefficients.size());
- for (size_t i = 0; i<isometryCoefficients.size(); i++)
- {
- xEmbedded[i] = isometryCoefficients[i].globalCoordinates();
- std::cout << "isometryCoefficients[i].globalCoordinates():" << isometryCoefficients[i].globalCoordinates() << std::endl;
-
- }
- std::ofstream outFile(resultFileName + ".data", std::ios_base::binary);
- MatrixVector::Generic::writeBinary(outFile, xEmbedded);
- outFile.close();
- ///////////////////////////////////////////
- // (Option) write Solution(DOF)-vector and vertex coordinates to .txt-File
- ///////////////////////////////////////////
- if (parameterSet.get<bool>("writeDOFvector", 0))
- writeDOFVector(gridView,targetDim, x, "DOFVectorR" + std::to_string(dim) + "_R" + std::to_string(targetDim) + ".txt");
- #endif
+ /**
+ * @brief Write Energy values.
+ *
+ */
+ std::cout << "(Final) Energy of discrete solution: " << numerical_energy<< std::endl;
+ if (parameterSet.get<bool>("compare_EnergyValues", 0))
+ {
+ auto analytical_energy = parameterSet.get<double>("analytical_energy");
+ auto energy_difference = analytical_energy - numerical_energy;
+ std::cout << "Analytical energy: " << analytical_energy<< std::endl;
+ std::cout << "Energy difference: " << energy_difference << std::endl;
+
+ // if(energy_difference > 1.0)
+ // {
+ // std::cerr << std::setprecision(9);
+ // std::cerr << "Energy difference: " << energy_difference << " is to large! " << std::endl;
+ // return 1;
+ // }
+ }
std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
return 0;
- }
\ No newline at end of file
+}
diff --git a/src/micro-problem.cc b/src/micro-problem.cc
index ca4ccf85f0891da6ff6771c2cd02be38bf432f73..a5e5a55077e285c22f1d95e6fc0b9bbca743510e 100644
--- a/src/micro-problem.cc
+++ b/src/micro-problem.cc
@@ -12,7 +12,7 @@
#include <dune/common/float_cmp.hh>
#include <dune/common/math.hh>
#include <dune/common/fvector.hh>
-#include <dune/common/fmatrix.hh>
+#include <dune/common/fmatrix.hh>
#include <dune/geometry/quadraturerules.hh>
@@ -29,7 +29,7 @@
#include <dune/istl/spqr.hh>
#include <dune/istl/preconditioners.hh>
#include <dune/istl/io.hh>
-#include <dune/istl/eigenvalue/test/matrixinfo.hh> // TEST: compute condition Number
+#include <dune/istl/eigenvalue/test/matrixinfo.hh> // TEST: compute condition Number
#include <dune/functions/functionspacebases/interpolate.hh>
#include <dune/functions/backends/istlvectorbackend.hh>
@@ -45,11 +45,11 @@
#include <dune/fufem/dunepython.hh>
#include <dune/microstructure/matrix_operations.hh>
-#include <dune/microstructure/CorrectorComputer.hh>
-#include <dune/microstructure/EffectiveQuantitiesComputer.hh>
-#include <dune/microstructure/prestrainedMaterial.hh>
+#include <dune/microstructure/CorrectorComputer.hh>
+#include <dune/microstructure/EffectiveQuantitiesComputer.hh>
+#include <dune/microstructure/prestrainedMaterial.hh>
-#include <dune/solvers/solvers/umfpacksolver.hh> //TEST
+#include <dune/solvers/solvers/umfpacksolver.hh> //TEST
#include <any>
#include <variant>
@@ -60,7 +60,7 @@ using namespace Dune;
using namespace MatrixOperations;
-using GridView = Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, 3>>::LeafGridView;
+using GridView = Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, 3> >::LeafGridView;
//////////////////////////////////////////////////////////////////////
// Helper functions for Table-Output
@@ -68,28 +68,28 @@ using GridView = Dune::YaspGrid<3, Dune::EquidistantOffsetCoordinates<double, 3>
/*! Center-aligns string within a field of width w. Pads with blank spaces
to enforce alignment. */
std::string center(const std::string s, const int w) {
- std::stringstream ss, spaces;
- int padding = w - s.size(); // count excess room to pad
- for(int i=0; i<padding/2; ++i)
- spaces << " ";
- ss << spaces.str() << s << spaces.str(); // format with padding
- if(padding>0 && padding%2!=0) // if odd #, add 1 space
- ss << " ";
- return ss.str();
+ std::stringstream ss, spaces;
+ int padding = w - s.size(); // count excess room to pad
+ for(int i=0; i<padding/2; ++i)
+ spaces << " ";
+ ss << spaces.str() << s << spaces.str(); // format with padding
+ if(padding>0 && padding%2!=0) // if odd #, add 1 space
+ ss << " ";
+ return ss.str();
}
/* Convert double to string with specified number of places after the decimal
and left padding. */
template<class type>
std::string prd(const type x, const int decDigits, const int width) {
- std::stringstream ss;
-// ss << std::fixed << std::right;
- ss << std::scientific << std::right; // Use scientific Output!
- ss.fill(' '); // fill space around displayed #
- ss.width(width); // set width around displayed #
- ss.precision(decDigits); // set # places after decimal
- ss << x;
- return ss.str();
+ std::stringstream ss;
+ // ss << std::fixed << std::right;
+ ss << std::scientific << std::right; // Use scientific Output!
+ ss.fill(' '); // fill space around displayed #
+ ss.width(width); // set width around displayed #
+ ss.precision(decDigits); // set # places after decimal
+ ss << x;
+ return ss.str();
}
/**
@@ -97,12 +97,12 @@ std::string prd(const type x, const int decDigits, const int width) {
* Check whether two points are equal on R/Z x R/Z x R
*/
auto equivalent = [](const FieldVector<double,3>& x, const FieldVector<double,3>& y)
- {
+ {
return ( (FloatCmp::eq(x[0],y[0]) or FloatCmp::eq(x[0]+1,y[0]) or FloatCmp::eq(x[0]-1,y[0]))
- and (FloatCmp::eq(x[1],y[1]) or FloatCmp::eq(x[1]+1,y[1]) or FloatCmp::eq(x[1]-1,y[1]))
- and (FloatCmp::eq(x[2],y[2]))
- );
- };
+ and (FloatCmp::eq(x[1],y[1]) or FloatCmp::eq(x[1]+1,y[1]) or FloatCmp::eq(x[1]-1,y[1]))
+ and (FloatCmp::eq(x[2],y[2]))
+ );
+ };
@@ -110,30 +110,30 @@ auto equivalent = [](const FieldVector<double,3>& x, const FieldVector<double,3>
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
int main(int argc, char *argv[])
{
- feenableexcept(FE_INVALID);
- MPIHelper::instance(argc, argv);
-
- Dune::Timer globalTimer;
-
- if (argc < 3)
- DUNE_THROW(Exception, "Usage: ./Cell-Problem <python path> <python module without extension>");
-
- // Start Python interpreter
- Python::start();
- auto pyMain = Python::main();
- pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << argv[1] << "')" << std::endl;
- auto pyModule = pyMain.import(argv[2]);
-
- ParameterTree parameterSet;
- pyModule.get("parameterSet").toC(parameterSet);
- // read possible further parameters from the command line
- ParameterTreeParser::readOptions(argc, argv, parameterSet);
- // Print all parameters, to make them appear in the log file
- std::cout << "Input parameters:" << std::endl;
- parameterSet.report();
+ feenableexcept(FE_INVALID);
+ MPIHelper::instance(argc, argv);
+
+ Dune::Timer globalTimer;
+
+ if (argc < 3)
+ DUNE_THROW(Exception, "Usage: ./Cell-Problem <python path> <python module without extension>");
+
+ // Start Python interpreter
+ Python::start();
+ auto pyMain = Python::main();
+ pyMain.runStream()
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << argv[1] << "')" << std::endl;
+ auto pyModule = pyMain.import(argv[2]);
+
+ ParameterTree parameterSet;
+ pyModule.get("parameterSet").toC(parameterSet);
+ // read possible further parameters from the command line
+ ParameterTreeParser::readOptions(argc, argv, parameterSet);
+ // Print all parameters, to make them appear in the log file
+ std::cout << "Input parameters:" << std::endl;
+ parameterSet.report();
//--- Output setter
std::string baseName = parameterSet.get("baseName", "CellProblem-result");
@@ -144,153 +144,153 @@ int main(int argc, char *argv[])
constexpr int dim = 3;
- // Debug/Print Options
+ // Debug/Print Options
bool print_debug = parameterSet.get<bool>("print_debug", false);
// VTK-write options
// bool write_prestrainFunctions = parameterSet.get<bool>("write_prestrainFunctions", false); //Not implemented yet.
/**
- * @brief Generate the grid.
- * Corrector Problem Domain (-1/2,1/2)^3.
- */
-// FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
-// FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
-
-// std::array<int,2> numLevels = parameterSet.get<std::array<int,2>>("numLevels", {3,3});
-// int levelCounter = 0;
-
-Dune::FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
-Dune::FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
-int microGridLevel = parameterSet.get<int>("microGridLevel", 1);
-std::array<int, dim> nElements = {(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel)};
-// std::cout << "Number of Grid-Elements in each direction: " << nElements << std::endl;
-std::cout << "Number of Grid-Elements in each direction: " << (int)std::pow(2,microGridLevel) << std::endl;
-
-
+ * @brief Generate the grid.
+ * Corrector Problem Domain (-1/2,1/2)^3.
+ */
+ // FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
+ // FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
+
+ // std::array<int,2> numLevels = parameterSet.get<std::array<int,2>>("numLevels", {3,3});
+ // int levelCounter = 0;
+
+ Dune::FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
+ Dune::FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
+ int microGridLevel = parameterSet.get<int>("microGridLevel", 1);
+ std::array<int, dim> nElements = {(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel)};
+ // std::cout << "Number of Grid-Elements in each direction: " << nElements << std::endl;
+ std::cout << "Number of Grid-Elements in each direction: " << (int)std::pow(2,microGridLevel) << std::endl;
+
+
///////////////////////////////////
// Create Data Storage
///////////////////////////////////
//--- Storage:: #1 level #2 L2SymError #3 L2SymErrorOrder #4 L2Norm(sym) #5 L2Norm(sym-analytic) #6 L2Norm(phi_1)
- //std::vector<std::variant<std::string, size_t , double>> Storage_Error;
- //--- Storage:: | level | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
-// std::vector<std::variant<std::string, size_t , double>> Storage_Quantities;
+ //std::vector<std::variant<std::string, size_t , double>> Storage_Error;
+ //--- Storage:: | level | q1 | q2 | q3 | q12 | q13 | q23 | b1 | b2 | b3 |
+ // std::vector<std::variant<std::string, size_t , double>> Storage_Quantities;
//--- GridLevel-Loop:
-// for(size_t level = numLevels[0] ; level <= numLevels[1]; level++)
-// {
-// std::cout << " ----------------------------------" << std::endl;
-// std::cout << "GridLevel: " << level << std::endl;
-// std::cout << " ----------------------------------" << std::endl;
-
-// // Storage_Error.push_back(level);
-// Storage_Quantities.push_back(level);
-// std::array<int, dim> nElements = {(int)std::pow(2,level) ,(int)std::pow(2,level) ,(int)std::pow(2,level)};
-// std::cout << "Number of Grid-Elements in each direction: " << nElements << std::endl;
-// log << "Number of Grid-Elements in each direction: " << nElements << std::endl;
-
- using CellGridType = YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
- CellGridType grid_CE(lower,upper,nElements);
- using GridView = CellGridType::LeafGridView;
- const GridView gridView_CE = grid_CE.leafGridView();
- if(print_debug)
- std::cout << "Host grid has " << gridView_CE.size(dim) << " vertices." << std::endl;
-
- //--- Choose a finite element space for Cell Problem
- using namespace Functions::BasisFactory;
- Functions::BasisFactory::Experimental::PeriodicIndexSet periodicIndices;
-
- //--- Get PeriodicIndices for periodicBasis (Don't do the following in real life: It has quadratic run-time in the number of vertices.)
- for (const auto& v1 : vertices(gridView_CE))
- for (const auto& v2 : vertices(gridView_CE))
- if (equivalent(v1.geometry().corner(0), v2.geometry().corner(0)))
- {
- periodicIndices.unifyIndexPair({gridView_CE.indexSet().index(v1)}, {gridView_CE.indexSet().index(v2)});
- }
-
- Dune::Timer basisSetupTimer;
- //--- Setup first order periodic Lagrange-Basis
- auto Basis_CE = makeBasis(
- gridView_CE,
- power<dim>(
- Functions::BasisFactory::Experimental::periodic(lagrange<1>(), periodicIndices),
- flatLexicographic()
- //blockedInterleaved() // Not Implemented
- ));
- std::cout << "Basis setup took " << basisSetupTimer.elapsed() << " seconds " << std::endl;
-
- if(print_debug)
- std::cout << "power<periodic> basis has " << Basis_CE.dimension() << " degrees of freedom" << std::endl;
-
-
-
- // -------------------------------------------------------
- // This needs to be declared as Callable otherwise Class(param) wont work. if _call__(self,x) is not implemented
- Python::Callable MicrostructureClass = pyModule.get("Microstructure");
-
- // Create instance of class
- // This needs to be a 'Python::Reference' and not 'Python::Callable' since Callable only works if __call__(self,x) is implemented in the python module!!!
- // Python::Reference microstructure = MicrostructureClass(2);
-
- //Setup for a constant microstructure.
- Python::Reference microstructure = MicrostructureClass();
-
- ///////////////////////////////////
- // Create prestrained material object
- ///////////////////////////////////
- Dune::Timer materialSetupTimer;
-
- using MaterialType = prestrainedMaterial<GridView>;
-
- // auto material = prestrainedMaterial(gridView_CE,parameterSet,pyModule);
- // auto material = prestrainedMaterial(gridView_CE,microstructure,parameterSet,pyModule);
- std::shared_ptr<MaterialType> material = std::make_shared<MaterialType>(gridView_CE,microstructure,parameterSet,pyModule);
- std::cout << "Material setup took " << materialSetupTimer.elapsed() << " seconds " << std::endl;
-
- // --- Get scale ratio
- // double gamma = parameterSet.get<double>("gamma",1.0);
- std::cout << "scale ratio (gamma) set to : " << material->gamma_ << std::endl;
-
- //--- Compute Correctors
- // auto correctorComputer = CorrectorComputer(Basis_CE, material, log, parameterSet);
- // auto correctorComputer = CorrectorComputer(Basis_CE, materialPointer, log, parameterSet);
- std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType>>(Basis_CE, material, parameterSet);
- correctorComputer->assemble();
- correctorComputer->solve();
-
- //--- Check Correctors (options):
- if(parameterSet.get<bool>("write_L2Error", false))
- correctorComputer->computeNorms();
- if(parameterSet.get<bool>("write_VTK", false))
- correctorComputer->writeCorrectorsVTK(microGridLevel);
- //--- Additional Test: check orthogonality (75) from paper:
- if(parameterSet.get<bool>("write_checkOrthogonality", false))
- correctorComputer->check_Orthogonality();
- //--- Check symmetry of stiffness matrix
- if(print_debug)
- correctorComputer->checkSymmetry();
-
- //--- Compute effective quantities
- // auto effectiveQuantitiesComputer = EffectiveQuantitiesComputer(correctorComputer,material);
- auto effectiveQuantitiesComputer = EffectiveQuantitiesComputer(correctorComputer);
- effectiveQuantitiesComputer.computeEffectiveQuantities();
-
- //--- Write material indicator function to VTK
- if (parameterSet.get<bool>("write_materialFunctions", false))
- material->writeVTKMaterialFunctions(microGridLevel);
-
- //--- Get effective quantities
- auto Qeff = effectiveQuantitiesComputer.getQeff();
- auto Beff = effectiveQuantitiesComputer.getBeff();
- printmatrix(std::cout, Qeff, "Matrix Qeff", "--");
- printvector(std::cout, Beff, "Beff", "--");
-
-
- //--- Write effective quantities to matlab folder (for symbolic minimization)
- if(parameterSet.get<bool>("write_EffectiveQuantitiesToTxt", true))
- effectiveQuantitiesComputer.writeEffectiveQuantitiesToTxt(resultPath);
-
-
-
-
- std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
+ // for(size_t level = numLevels[0] ; level <= numLevels[1]; level++)
+ // {
+ // std::cout << " ----------------------------------" << std::endl;
+ // std::cout << "GridLevel: " << level << std::endl;
+ // std::cout << " ----------------------------------" << std::endl;
+
+ // // Storage_Error.push_back(level);
+ // Storage_Quantities.push_back(level);
+ // std::array<int, dim> nElements = {(int)std::pow(2,level) ,(int)std::pow(2,level) ,(int)std::pow(2,level)};
+ // std::cout << "Number of Grid-Elements in each direction: " << nElements << std::endl;
+ // log << "Number of Grid-Elements in each direction: " << nElements << std::endl;
+
+ using CellGridType = YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
+ CellGridType grid_CE(lower,upper,nElements);
+ using GridView = CellGridType::LeafGridView;
+ const GridView gridView_CE = grid_CE.leafGridView();
+ if(print_debug)
+ std::cout << "Host grid has " << gridView_CE.size(dim) << " vertices." << std::endl;
+
+ //--- Choose a finite element space for Cell Problem
+ using namespace Functions::BasisFactory;
+ Functions::BasisFactory::Experimental::PeriodicIndexSet periodicIndices;
+
+ //--- Get PeriodicIndices for periodicBasis (Don't do the following in real life: It has quadratic run-time in the number of vertices.)
+ for (const auto& v1 : vertices(gridView_CE))
+ for (const auto& v2 : vertices(gridView_CE))
+ if (equivalent(v1.geometry().corner(0), v2.geometry().corner(0)))
+ {
+ periodicIndices.unifyIndexPair({gridView_CE.indexSet().index(v1)}, {gridView_CE.indexSet().index(v2)});
+ }
+
+ Dune::Timer basisSetupTimer;
+ //--- Setup first order periodic Lagrange-Basis
+ auto Basis_CE = makeBasis(
+ gridView_CE,
+ power<dim>(
+ Functions::BasisFactory::Experimental::periodic(lagrange<1>(), periodicIndices),
+ flatLexicographic()
+ //blockedInterleaved() // Not Implemented
+ ));
+ std::cout << "Basis setup took " << basisSetupTimer.elapsed() << " seconds " << std::endl;
+
+ if(print_debug)
+ std::cout << "power<periodic> basis has " << Basis_CE.dimension() << " degrees of freedom" << std::endl;
+
+
+
+ // -------------------------------------------------------
+ // This needs to be declared as Callable otherwise Class(param) wont work. if _call__(self,x) is not implemented
+ Python::Callable MicrostructureClass = pyModule.get("Microstructure");
+
+ // Create instance of class
+ // This needs to be a 'Python::Reference' and not 'Python::Callable' since Callable only works if __call__(self,x) is implemented in the python module!!!
+ // Python::Reference microstructure = MicrostructureClass(2);
+
+ //Setup for a constant microstructure.
+ Python::Reference microstructure = MicrostructureClass();
+
+ ///////////////////////////////////
+ // Create prestrained material object
+ ///////////////////////////////////
+ Dune::Timer materialSetupTimer;
+
+ using MaterialType = prestrainedMaterial<GridView>;
+
+ // auto material = prestrainedMaterial(gridView_CE,parameterSet,pyModule);
+ // auto material = prestrainedMaterial(gridView_CE,microstructure,parameterSet,pyModule);
+ std::shared_ptr<MaterialType> material = std::make_shared<MaterialType>(gridView_CE,microstructure,parameterSet,pyModule);
+ std::cout << "Material setup took " << materialSetupTimer.elapsed() << " seconds " << std::endl;
+
+ // --- Get scale ratio
+ // double gamma = parameterSet.get<double>("gamma",1.0);
+ std::cout << "scale ratio (gamma) set to : " << material->gamma_ << std::endl;
+
+ //--- Compute Correctors
+ // auto correctorComputer = CorrectorComputer(Basis_CE, material, log, parameterSet);
+ // auto correctorComputer = CorrectorComputer(Basis_CE, materialPointer, log, parameterSet);
+ std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType> >(Basis_CE, material, parameterSet);
+ correctorComputer->assemble();
+ correctorComputer->solve();
+
+ //--- Check Correctors (options):
+ if(parameterSet.get<bool>("write_L2Error", false))
+ correctorComputer->computeNorms();
+ if(parameterSet.get<bool>("write_VTK", false))
+ correctorComputer->writeCorrectorsVTK(microGridLevel);
+ //--- Additional Test: check orthogonality (75) from paper:
+ if(parameterSet.get<bool>("write_checkOrthogonality", false))
+ correctorComputer->check_Orthogonality();
+ //--- Check symmetry of stiffness matrix
+ if(print_debug)
+ correctorComputer->checkSymmetry();
+
+ //--- Compute effective quantities
+ // auto effectiveQuantitiesComputer = EffectiveQuantitiesComputer(correctorComputer,material);
+ auto effectiveQuantitiesComputer = EffectiveQuantitiesComputer(correctorComputer);
+ effectiveQuantitiesComputer.computeEffectiveQuantities();
+
+ //--- Write material indicator function to VTK
+ if (parameterSet.get<bool>("write_materialFunctions", false))
+ material->writeVTKMaterialFunctions(microGridLevel);
+
+ //--- Get effective quantities
+ auto Qeff = effectiveQuantitiesComputer.getQeff();
+ auto Beff = effectiveQuantitiesComputer.getBeff();
+ printmatrix(std::cout, Qeff, "Matrix Qeff", "--");
+ printvector(std::cout, Beff, "Beff", "--");
+
+
+ //--- Write effective quantities to matlab folder (for symbolic minimization)
+ if(parameterSet.get<bool>("write_EffectiveQuantitiesToTxt", true))
+ effectiveQuantitiesComputer.writeEffectiveQuantitiesToTxt(resultPath);
+
+
+
+
+ std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
}
diff --git a/test/analyticalcylindertest.cc b/test/analyticalcylindertest.cc
index 4ced9ed89ae63d2b8d02f08e15b15a9e824f794d..70bb021aad20903e2cd175ab80c2bc3104f16a07 100644
--- a/test/analyticalcylindertest.cc
+++ b/test/analyticalcylindertest.cc
@@ -1,10 +1,8 @@
#include <config.h>
#include <signal.h>
#include <memory>
-
#include <fenv.h>
#include <array>
-
#include <math.h>
// Includes for the ADOL-C automatic differentiation library
@@ -13,22 +11,21 @@
#include <dune/fufem/utilities/adolcnamespaceinjections.hh>
#include <dune/common/typetraits.hh>
-
#include <dune/common/bitsetvector.hh>
#include <dune/common/parametertree.hh>
#include <dune/common/parametertreeparser.hh>
#include <dune/grid/uggrid.hh>
#include <dune/grid/utility/structuredgridfactory.hh>
-
#include <dune/grid/io/file/gmshreader.hh>
#include <dune/grid/io/file/vtk.hh>
#include <dune/functions/gridfunctions/discreteglobalbasisfunction.hh>
+#include <dune/functions/gridfunctions/composedgridfunction.hh>
+#include <dune/functions/functionspacebases/cubichermitebasis.hh>
#include <dune/functions/functionspacebases/lagrangebasis.hh>
#include <dune/functions/functionspacebases/powerbasis.hh>
#include <dune/functions/functionspacebases/interpolate.hh>
-#include <dune/functions/functionspacebases/reducedcubichermitetrianglebasis.hh>
#include <dune/fufem/boundarypatch.hh>
#include <dune/fufem/functiontools/boundarydofs.hh>
@@ -42,25 +39,21 @@
#include <dune/gfe/spaces/productmanifold.hh>
#include <dune/gfe/spaces/realtuple.hh>
#include <dune/gfe/spaces/rotation.hh>
-#include <dune/gfe/localdiscretekirchhoffbendingisometry.hh>
+#include <dune/gfe/functions/discretekirchhoffbendingisometry.hh>
+#include <dune/gfe/functions/embeddedglobalgfefunction.hh>
+#include <dune/gfe/functions/localprojectedfefunction.hh>
#include <dune/gfe/assemblers/localgeodesicfeadolcstiffness.hh>
-#include <dune/gfe/assemblers/harmonicenergy.hh>
#include <dune/gfe/assemblers/geodesicfeassembler.hh>
+#include <dune/gfe/assemblers/discretekirchhoffbendingenergy.hh>
+#include <dune/gfe/assemblers/forceenergy.hh>
+#include <dune/gfe/assemblers/sumenergy.hh>
#include <dune/gfe/bendingisometryhelper.hh>
#include <dune/gfe/riemannianpnsolver.hh>
-#include <dune/gfe/embeddedglobalgfefunction.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergy.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyconforming.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewicz.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewiczprojected.hh>
-// #include <dune/gfe/energies/discretekirchhoffbendingenergyprestrained.hh>
+#include <dune/gfe/riemanniantrsolver.hh>
+#include <dune/microstructure/bendingisometryaddons.hh>
#include <dune/microstructure/energies/discretekirchhoffbendingenergyprestrained.hh>
-#include <dune/gfe/spaces/stiefelmanifold.hh>
-// #include <dune/gfe/spaces/stiefelmatrix.hh>
-
-
#include <dune/gmsh4/gmsh4reader.hh>
#include <dune/gmsh4/gridcreators/lagrangegridcreator.hh>
@@ -68,363 +61,36 @@ const int dim = 2;
using namespace Dune;
-
/**
* @brief Test for the macroscopic simulation:
* We consider the special case of a effective prestrain/spontaneous curvature Beff given by
* Beff = [1.0 , 0.0]
* [0.0 ,0.5]
- * on a rectangular domain (0,2*pi)^2 with clampled boundary conditions.
- * In this case there is a known exact solution (deformation) u(x,y) = (sin(x), y , 1-cos(x))
- * The analytical energy is given by E[u_ana] = (pi)^2/2.0 .
- * That is used to validate the macroscopic minimization problem.
+ * on a rectangular domain (0,2*pi)^2 with clampled boundary conditions.
+ * In this case there is a known exact solution (deformation) u(x,y) = (sin(x), y , 1-cos(x))
+ * The analytical energy is given by E[u_ana] = (pi)^2/2.0 .
+ * That is used to validate the macroscopic minimization problem.
* (see Bartels,Bonito,Nochetto - Bilayer Plates: Model Reduction, Γ‐Convergent Finite Element Approximation, and Discrete Gradient Flow, p.25)
* We measure/test the L2-error between the exact and discrete solution up to a certain tolerance.
*/
-
-
-// /**
-// * @brief Comparison of different function definitions for debugging purposes.
-// * TODO: remove later
-// */
-// template<class LocalDiscreteKirchhoffFunction,class DeformationFunction, class GridView>
-// auto compare(LocalDiscreteKirchhoffFunction& kirchhoffFunction,
-// DeformationFunction& deformationFunction,
-// GridView& gridView)
-// {
-// std::cout << "COMPARE:" << std::endl;
-// auto localDeformation = localFunction(deformationFunction);
-// auto rotation = derivative(deformationFunction);
-// auto localRotation = localFunction(rotation);
-// auto localRotation_2 = derivative(localDeformation);
-// for (const auto &element : elements(gridView))
-// {
-// auto geometry = element.geometry();
-
-// kirchhoffFunction.bind(element);
-// localDeformation.bind(element);
-// localRotation.bind(element);
-// localRotation_2.bind(element);
-
-// //evaluate at nodes:
-// for (int i=0; i<geometry.corners(); i++)
-// {
-// auto kirchhoffOut = kirchhoffFunction.evaluate(geometry.local(geometry.corner(i))).globalCoordinates();
-// auto KirchhoffRot = kirchhoffFunction.evaluateDerivative(geometry.local(geometry.corner(i)));
-// //Test
-// const auto& jacobian = geometry.jacobian(geometry.corner(i));
-// printmatrix(std::cout, jacobian, "jacobianInverse:", "--");
-
-// auto defOut = localDeformation(geometry.local(geometry.corner(i)));
-// auto defRot = localRotation(geometry.local(geometry.corner(i)));
-// auto defRot_2 = localRotation_2(geometry.local(geometry.corner(i)));
-
-// printvector(std::cout, kirchhoffOut, "kirchhoffOut:", "--");
-// printvector(std::cout, defOut, "defOut:", "--");
-// printmatrix(std::cout, KirchhoffRot, "KirchhoffRot:", "--");
-// printmatrix(std::cout, defRot, "defRot:", "--");
-// // printmatrix(std::cout, defRot*jacobian, "defRot*jacobian:", "--"); // deprecated: when ReducedCubicHermite returned values in globalCoordinates, this was actually neccessary to get the right values.
-// }
-// }
-// }
-
-
-// /**
-// * @brief Test that checks the isometry constraint at the nodes of the Triangulation
-// */
-// template<class LocalDiscreteKirchhoffFunction, class GridView>
-// auto nodewiseIsometryTest(LocalDiscreteKirchhoffFunction& deformationFunction,
-// GridView& gridView)
-// {
-// for (const auto &element : elements(gridView))
-// {
-// auto geometry = element.geometry();
-// deformationFunction.bind(element);
-// // evaluate at nodes:
-// for (int i=0; i<geometry.corners(); i++)
-// {
-// // auto out = deformationFunction.evaluate(geometry.local(geometry.corner(i))).globalCoordinates();
-// auto rot = deformationFunction.evaluateDerivative(geometry.local(geometry.corner(i)));
-// FieldMatrix<double,2,2> I = ScaledIdentityMatrix<double,2>(1);
-// auto diff = (rot.transposed()*rot) - I;
-// // std::cout << "diff.frobenius_norm():" << diff.frobenius_norm() << std::endl;
-// if(diff.frobenius_norm()>1e-8)
-// DUNE_THROW(Exception, "Nodewise Isometry Test failed! with error"<< diff.frobenius_norm());
-// }
-// }
-// std::cout << "nodewiseIsometryTest passed." << std::endl;
-// }
-
-
-// template<class DeformationFunction>
-// auto nodewiseIsometryTest(DeformationFunction& deformationGridViewFunction)
-// {
-// auto localDeformation = localFunction(deformationGridViewFunction);
-// auto localRotation = derivative(localDeformation);
-// auto gridView = deformationGridViewFunction.basis().gridView();
-// for (const auto &element : elements(gridView))
-// {
-// auto geometry = element.geometry();
-// localDeformation.bind(element);
-// localRotation.bind(element);
-
-// // evaluate at nodes:
-// for (int i=0; i<geometry.corners(); i++)
-// {
-// auto rot = localRotation(geometry.local(geometry.corner(i)));
-// auto product = rot.transposed()*rot;
-
-// FieldMatrix<double,2,2> I = ScaledIdentityMatrix<double,2>(1);
-// auto diff = (rot.transposed()*rot) - I;
-
-// if(diff.frobenius_norm()>1e-8)
-// DUNE_THROW(Exception, "Nodewise Isometry Test failed! with error"<< diff.frobenius_norm());
-// }
-// }
-// std::cout << "nodewiseIsometryTest passed." << std::endl;
-// }
-
-
-
-// /** \brief The identity function in R^d, and its derivative
-// *
-// * This is needed to compute the displacement from the deformation (for visualization).
-// * Since we want to represent it in a Hermite finite element space, we need
-// * the derivative as well.
-// *
-// * Is there no shorter way to implement this?
-// */
-// template<class K>
-// class IdentityGridEmbedding
-// {
-// public:
-// //! Evaluate identity
-// FieldVector<K,3> operator() (const FieldVector<K,2>& x) const
-// {
-// return {x[0], x[1], 0.0};
-// }
-
-// /**
-// * \brief Obtain derivative of identity function
-// */
-// friend auto derivative(const IdentityGridEmbedding& p)
-// {
-// return [](const FieldVector<K,dim>& x) { return FieldMatrix<K,3,2>({{1,0}, {0,1}, {0,0}}); };
-// }
-// };
-
-// /** \brief Project a vector field onto a product of ReducedHermiteTriangle spaces
-// *
-// * \todo This functionality should be provided by dune-functions. It currently isn't,
-// * because ReducedHermiteTriangleBasis is not an affine finite element.
-// */
-// template <class Basis, class Coefficients, class Function>
-// void interpolate(const Basis& basis, Coefficients& coefficients, Function& f)
-// {
-// coefficients.resize(basis.size());
-// // coefficients.resize(basis.dimension());
-// auto localView = basis.localView();
-
-// for (auto&& e : elements(basis.gridView()))
-// {
-// localView.bind(e);
-
-// // Loop over the corners
-// for (std::size_t i=0; i<3; i++)
-// {
-// auto pos = e.geometry().corner(i);
-// auto value = f(pos);
-// auto der = derivative(f)(pos);
-
-// // printvector(std::cout, value, "value:", "--");
-// // printmatrix(std::cout, der, "der:", "--");
-
-// // std::cout << "sin(x):" << sin(pos[0]) << std::endl;
-// // std::cout << "cos(x):" << cos(pos[0]) << std::endl;
-// // printvector(std::cout, pos, "pos: ", "--");
-
-// // Loop over components of power basis
-// for(std::size_t k=0; k<3 ; k++)
-// {
-// auto localIdx_0 = localView.tree().child(k).localIndex(i); // index for values
-// auto localIdx_1 = localView.tree().child(k).localIndex(i+3); // index for partial derivatives w.r.t. x
-// auto localIdx_2 = localView.tree().child(k).localIndex(i+6); // index for partial derivatives w.r.t. y
-// // std::cout << "localIdx_0: " << localIdx_0 << std::endl;
-// // std::cout << "localIdx_1: " << localIdx_1 << std::endl;
-// // std::cout << "localIdx_2: " << localIdx_2 << std::endl;
-
-// auto globalIdx_0 = localView.index(localIdx_0);
-// auto globalIdx_1 = localView.index(localIdx_1);
-// auto globalIdx_2 = localView.index(localIdx_2);
-// // std::cout << "globalIdx_0: " << globalIdx_0 << std::endl;
-// // std::cout << "globalIdx_1: " << globalIdx_1 << std::endl;
-// // std::cout << "globalIdx_2: " << globalIdx_2 << std::endl;
-
-// coefficients[globalIdx_0[0]][globalIdx_0[1]] = value[k];
-// coefficients[globalIdx_1[0]][globalIdx_1[1]] = der[k][0];
-// coefficients[globalIdx_2[0]][globalIdx_2[1]] = der[k][1];
-// }
-// }
-
-// }
-// }
-
-// /**
-// * @brief Data structure conversion from 'VectorSpaceCoefficients' to 'IsometryCoefficients'.
-// * TODO: Throw an error if rotation-part is not orthogonal? (expensive to check)
-// */
-// template<class DiscreteKirchhoffBasis, class CoefficientBasis, class Coefficients, class IsometryCoefficients>
-// void vectorToIsometryCoefficientMap(const DiscreteKirchhoffBasis& discreteKirchhoffBasis,
-// const CoefficientBasis& coefficientBasis,
-// const Coefficients& vectorCoefficients,
-// IsometryCoefficients& isometryCoefficients)
-// {
-// std::cout << "calling vectorToIsometryCoefficientMap" << std::endl;
-// auto localView = discreteKirchhoffBasis.localView();
-// auto localViewCoefficients = coefficientBasis.localView();
-
-// using RT = typename IsometryCoefficients::value_type::ctype;
-
-// for (const auto &element : elements(coefficientBasis.gridView()))
-// {
-// localView.bind(element);
-// localViewCoefficients.bind(element);
-
-// // Loop over the corners
-// for (std::size_t c=0; c<3; c++)
-// {
-// size_t localIdxOut = localViewCoefficients.tree().localIndex(c);
-// size_t globalIdxOut = localViewCoefficients.index(localIdxOut);
-
-// FieldVector<RT,3> currentDeformation(0);
-// FieldVector<RT,3> currentDerivative_x(0);
-// FieldVector<RT,3> currentDerivative_y(0);
-
-// // Loop over components of power basis
-// for(std::size_t k=0; k<3 ; k++)
-// {
-// auto localIdx_0 = localView.tree().child(k).localIndex(c); // index for values
-// auto localIdx_1 = localView.tree().child(k).localIndex(c+3); // index for partial derivatives w.r.t. x
-// auto localIdx_2 = localView.tree().child(k).localIndex(c+6); // index for partial derivatives w.r.t. y
-// // std::cout << "localIdx_0: " << localIdx_0 << std::endl;
-// // std::cout << "localIdx_1: " << localIdx_1 << std::endl;
-// // std::cout << "localIdx_2: " << localIdx_2 << std::endl;
-
-// auto globalIdx_0 = localView.index(localIdx_0);
-// auto globalIdx_1 = localView.index(localIdx_1);
-// auto globalIdx_2 = localView.index(localIdx_2);
-
-// // blockedInterleaved -- Version
-// currentDeformation[k] = vectorCoefficients[globalIdx_0[0]][globalIdx_0[1]];
-// currentDerivative_x[k] = vectorCoefficients[globalIdx_1[0]][globalIdx_1[1]];
-// currentDerivative_y[k] = vectorCoefficients[globalIdx_2[0]][globalIdx_2[1]];
-
-// }
-
-// //cross product to get last column of rotation matrix
-// FieldVector<RT,3> cross = {currentDerivative_x[1]*currentDerivative_y[2] - currentDerivative_x[2]*currentDerivative_y[1],
-// currentDerivative_x[2]*currentDerivative_y[0] - currentDerivative_x[0]*currentDerivative_y[2],
-// currentDerivative_x[0]*currentDerivative_y[1] - currentDerivative_x[1]*currentDerivative_y[0]};
-
-// FieldMatrix<RT,3,3> rotMatrix(0);
-// for(std::size_t k=0; k<3 ; k++)
-// {
-// rotMatrix[k][0] = currentDerivative_x[k];
-// rotMatrix[k][1] = currentDerivative_y[k];
-// rotMatrix[k][2] = cross[k];
-// }
-// // printmatrix(std::cout, rotMatrix, "rotMatrix:", "--");
-// using namespace Dune::Indices;
-// isometryCoefficients[globalIdxOut][_1].set(rotMatrix); //TODO: Throw if matrix is not orthogonal?
-// isometryCoefficients[globalIdxOut][_0] = (RealTuple<RT, 3>)currentDeformation;
-// }
-// }
-// }
-
-
-// /**
-// * @brief Data structure conversion from 'IsometryCoefficients' to 'VectorSpaceCoefficients'.
-// */
-// template<class DiscreteKirchhoffBasis, class CoefficientBasis, class Coefficients, class IsometryCoefficients>
-// void isometryToVectorCoefficientMap(const DiscreteKirchhoffBasis& discreteKirchhoffBasis,
-// const CoefficientBasis& coefficientBasis,
-// Coefficients& coefficients,
-// const IsometryCoefficients& isometryCoefficients)
-// {
-// std::cout << "calling isometryToVectorCoefficientMap" << std::endl;
-// auto localView = discreteKirchhoffBasis.localView();
-// auto localViewCoefficients = coefficientBasis.localView();
-
-// for (const auto &element : elements(coefficientBasis.gridView()))
-// {
-// localView.bind(element);
-// localViewCoefficients.bind(element);
-
-// // Loop over the corners
-// for (std::size_t c=0; c<3; c++)
-// {
-// size_t localIdx = localViewCoefficients.tree().localIndex(c);
-// size_t globalIdx = localViewCoefficients.index(localIdx);
-
-// // Loop over components of power basis
-// for(std::size_t k=0; k<3 ; k++)
-// {
-// auto localIdx_0 = localView.tree().child(k).localIndex(c); // index for values
-// auto localIdx_1 = localView.tree().child(k).localIndex(c+3); // index for partial derivatives w.r.t. x
-// auto localIdx_2 = localView.tree().child(k).localIndex(c+6); // index for partial derivatives w.r.t. y
-// // std::cout << "localIdx_0: " << localIdx_0 << std::endl;
-// // std::cout << "localIdx_1: " << localIdx_1 << std::endl;
-// // std::cout << "localIdx_2: " << localIdx_2 << std::endl;
-
-// auto globalIdxOut_0 = localView.index(localIdx_0);
-// auto globalIdxOut_1 = localView.index(localIdx_1);
-// auto globalIdxOut_2 = localView.index(localIdx_2);
-
-// using namespace Dune::Indices;
-// auto deformation = isometryCoefficients[globalIdx][_0].globalCoordinates();
-// auto rotation1 = isometryCoefficients[globalIdx][_1].director(0);
-// auto rotation2 = isometryCoefficients[globalIdx][_1].director(1);
-
-// coefficients[globalIdxOut_0[0]][globalIdxOut_0[1]] = deformation[k];
-// coefficients[globalIdxOut_1[0]][globalIdxOut_1[1]] = rotation1[k];
-// coefficients[globalIdxOut_2[0]][globalIdxOut_2[1]] = rotation2[k];
-// }
-// }
-// }
-// }
-
-
int main(int argc, char *argv[])
{
- /**
- * @brief We use this to catch a 'Floating point exception' caused by the 'innerSolver'
- * in RiemannianProximalNewton
- */
- std::shared_ptr<void(int)> handler(
- signal(SIGFPE, [](int signum) {throw std::logic_error("FPE"); }),
- [](__sighandler_t f) { signal(SIGFPE, f); });
+ std::shared_ptr<void(int)> handler(
+ signal(SIGFPE, [](int signum) {
+ throw std::logic_error("FPE");
+ }),
+ [](__sighandler_t f) {
+ signal(SIGFPE, f);
+ });
- feenableexcept(FE_INVALID);
+ feenableexcept(FE_INVALID);
MPIHelper::instance(argc, argv);
Dune::Timer globalTimer;
- // if (argc < 3)
- // DUNE_THROW(Exception, "Usage: ./bending-isometries <python path> <python module without extension>");
-
- // Start Python interpreter
- // Python::start();
- // auto pyMain = Python::main();
- // pyMain.runStream()
- // << std::endl << "import math"
- // << std::endl << "import sys"
- // << std::endl << "sys.path.append('" << argv[1] << "')" << std::endl;
- // auto pyModule = pyMain.import(argv[2]);
-
-
std::cout << "Current path is " << std::filesystem::current_path() << '\n';
std::filesystem::path file_path = (__FILE__);
std::cout<< "File path: " << file_path<<std::endl;
@@ -435,9 +101,9 @@ int main(int argc, char *argv[])
Python::start();
auto pyMain = Python::main();
pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
auto pyModule = pyMain.import("analyticalcylindertest");
// parse data file
@@ -496,16 +162,16 @@ int main(int argc, char *argv[])
///////////////////////////////////////////////////////
// General coefficient vector of a Discrete Kirchhoff deformation function
- using VectorSpaceCoefficients = BlockVector<FieldVector<double,3>>;
+ using VectorSpaceCoefficients = BlockVector<FieldVector<double,3> >;
// Coefficient vector of a Discrete Kirchhoff deformation function that is constrained to be an isometry
- using Coefficient = GFE::ProductManifold<RealTuple<double,3>, Rotation<double,3> >;
+ using Coefficient = GFE::ProductManifold<GFE::RealTuple<double,3>, GFE::Rotation<double,3> >;
using IsometryCoefficients = std::vector<Coefficient>;
using namespace Functions::BasisFactory;
auto deformationBasis = makeBasis(gridView,
- power<3>(reducedCubicHermiteTriangle(),
+ power<3>(reducedCubicHermite(),
blockedInterleaved()));
@@ -517,74 +183,33 @@ int main(int argc, char *argv[])
// A basis for the tangent space (used to set DirichletNodes)
auto tangentBasis = makeBasis(gridView,
power<Coefficient::TangentVector::dimension>(
- lagrange<1>(),
- blockedInterleaved()));
-
-
- // ///////////////////////////////////////////
- // // Read Dirichlet values
- // ///////////////////////////////////////////
- // BitSetVector<1> dirichletVertices(gridView.size(dim), false);
- // const typename GridView::IndexSet &indexSet = gridView.indexSet();
-
- // // Make Python function that computes which vertices are on the Dirichlet boundary,
- // // based on the vertex positions.
- // auto dirichletIndicatorFunction = Python::make_function<bool>(pyModule.get("dirichlet_indicator"));
-
- // for (auto &&vertex : vertices(gridView))
- // dirichletVertices[indexSet.index(vertex)] = dirichletIndicatorFunction(vertex.geometry().corner(0));
-
- // BoundaryPatch<GridView> dirichletBoundary(gridView, dirichletVertices);
- // BitSetVector<Coefficient::TangentVector::dimension> dirichletNodes(tangentBasis.size(), false);
- // constructBoundaryDofs(dirichletBoundary, tangentBasis, dirichletNodes);
-
- ///////////////////////////////////////////
- // Read Dirichlet values (NEW VERSION)
- ///////////////////////////////////////////
- BitSetVector<1> dirichletVertices(gridView.size(dim), false);
- const typename GridView::IndexSet &indexSet = gridView.indexSet();
-
+ lagrange<1>(),
+ blockedInterleaved()));
- BitSetVector<Coefficient::TangentVector::dimension> dirichletNodes(tangentBasis.size(), false); //tangentBasis.size()=coefficientBasis.size()
-
- /**
- * @brief Make Python function that computes which vertices are on the Dirichlet boundary,
- * based on the vertex positions.
- */
- auto dirichletIndicatorFunction = Python::make_function<bool>(pyModule.get("dirichlet_indicator"));
-
-
-
- /**
- * @brief If we want to clamp DOFs inside the domain, we connot use 'BoundaryPatch'
- * and 'constructBoundaryDofs'. This is a workaround for now.
- *
- *
- */
- for (auto &&vertex : vertices(gridView))
- {
- dirichletVertices[indexSet.index(vertex)] = dirichletIndicatorFunction(vertex.geometry().corner(0));
-
- if(dirichletIndicatorFunction(vertex.geometry().corner(0)))
- {
- dirichletNodes[indexSet.index(vertex)] = true;
- }
-
- }
-
- // std::cout << "tangentBasis.size():" << tangentBasis.size() << std::endl;
- // std::cout << "coefficientBasis.size():" << coefficientBasis.size() << std::endl;
+ ///////////////////////////////////////////
+ // Read Dirichlet values
+ ///////////////////////////////////////////
+ const typename GridView::IndexSet &indexSet = gridView.indexSet();
+ BitSetVector<Coefficient::TangentVector::dimension> dirichletNodes(tangentBasis.size(), false); //tangentBasis.size()=coefficientBasis.size()
- // // deprecated:
- // // BoundaryPatch<GridView> dirichletBoundary(gridView, dirichletVertices);
- // // constructBoundaryDofs(dirichletBoundary, tangentBasis, dirichletNodes);
+ /**
+ * @brief Make Python function that computes which vertices are on the Dirichlet boundary,
+ * based on the vertex positions.
+ */
+ auto dirichletIndicatorFunction = Python::make_function<bool>(pyModule.get("dirichlet_indicator"));
- // // TEST: print dirichletNodes
- // std::cout << "print dirichletVertices:" << std::endl;
- // std::cout << dirichletVertices << std::endl;
+ /**
+ * @brief If we want to clamp DOFs inside the domain, we connot use 'BoundaryPatch'
+ * and 'constructBoundaryDofs'. This is a workaround for now.
+ */
+ for (auto &&vertex : vertices(gridView))
+ {
+ if(dirichletIndicatorFunction(vertex.geometry().corner(0)))
+ {
+ dirichletNodes[indexSet.index(vertex)] = true;
+ }
- // std::cout << "print dirichletNodes:" << std::endl;
- // std::cout << dirichletNodes << std::endl;
+ }
@@ -595,7 +220,7 @@ int main(int argc, char *argv[])
VectorSpaceCoefficients x(deformationBasis.size());
- IdentityGridEmbedding<double> identityGridEmbedding;
+ Dune::GFE::Impl::IdentityGridEmbedding<double> identityGridEmbedding;
// interpolate(deformationBasis, x, identityGridEmbedding);
interpolate(deformationBasis, x, pythonInitialIterate); // Interpolation on a python function
@@ -607,10 +232,9 @@ int main(int argc, char *argv[])
using ACoefficient = typename Coefficient::template rebind<adouble>::other;
using AIsometryCoefficients = std::vector<ACoefficient>;
-
/**
- * @brief We need to setup LocalDiscreteKirchhoffBendingIsometry with a coefficient
- * vector of ctype 'adouble' while the solver gets a coefficient vector
+ * @brief We need to setup LocalDiscreteKirchhoffBendingIsometry with a coefficient
+ * vector of ctype 'adouble' while the solver gets a coefficient vector
* of ctype 'double'.
*/
IsometryCoefficients isometryCoefficients(coefficientBasis.size());
@@ -621,48 +245,19 @@ int main(int argc, char *argv[])
std::cout << "deformationBasis.size():" << deformationBasis.size() << std::endl;
std::cout << "deformationBasis.dimension():" << deformationBasis.dimension() << std::endl;
+ // TEST: compute initial isometry error
+ auto initialDeformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, x);
+ nodewiseIsometryTest(initialDeformationFunction);
- // isometryToVectorCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients);
- /**
- * @brief Print coefficient vector:
- */
- // for(int i=0; i<x.size(); i++)
- // std::cout<< "x[i]:" << x[i] << std::endl;
-
- /**
- * @brief TEST: compute isometry error
- */
- auto initialDeformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x);
- // nodewiseIsometryTest(initialDeformationFunction);
-
-
-
+ using namespace Dune::GFE::Impl;
// Convert coefficient data structure from 'VectorSpaceCoefficients' to 'IsometryCoefficients'
vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients);
vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients_adouble);
-
- /**
- * @brief TEST: conversion of coefficient vectors (back & forth)
- */
- VectorSpaceCoefficients x_convert = x;
- IsometryCoefficients isometryCoefficientsTMP(coefficientBasis.size());
- vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x_convert,isometryCoefficientsTMP);
- isometryToVectorCoefficientMap(deformationBasis,coefficientBasis,x_convert,isometryCoefficientsTMP);
- //Check difference
- for(int i=0; i<x.size(); i++)
- {
- if((x[i]-x_convert[i]).two_norm() > 1e-4)
- std::cout << "Coefficient conversion failed! with x[i]-x_convert[i]:" << x[i]-x_convert[i] << std::endl;
- }
-
-
-
-
using DeformationBasis = decltype(deformationBasis);
- using LocalDKFunction = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, AIsometryCoefficients>;
+ using LocalDKFunction = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, AIsometryCoefficients>;
LocalDKFunction localDKFunction(deformationBasis, coefficientBasis, isometryCoefficients_adouble);
nodewiseIsometryTest(localDKFunction, gridView);
@@ -670,99 +265,69 @@ int main(int argc, char *argv[])
/**
* @brief Get force term
*/
- auto pythonForce = Python::make_function<FieldVector<double,3>>(pyModule.get("force"));
- // auto forceGVF = Dune::Functions::makeGridViewFunction(dummyForce, gridView);
+ auto pythonForce = Python::make_function<FieldVector<double,3> >(pyModule.get("force"));
auto forceGVF = Dune::Functions::makeGridViewFunction(pythonForce, gridView);
auto localForce = localFunction(forceGVF);
- /**
- * @brief Get effective prestrain Tensor
- */
- // Dune::FieldVector<adouble,3> Beffvec = parameterSet.get<Dune::FieldVector<adouble,3>>("effectivePrestrain", {0.0, 0.0, 0.0});
- // Dune::FieldMatrix<adouble,2,2> effectivePrestrain = {{(adouble)Beffvec[0], (adouble)Beffvec[2]}, {(adouble)Beffvec[2],(adouble)Beffvec[1]} };
- // printmatrix(std::cout, effectivePrestrain, "effective prestrain (Beff): ", "--");
-
-
- // /**
- // * @brief Get effective quadratic form
- // */
- // Dune::FieldVector<adouble,6> Qhomvec = parameterSet.get<Dune::FieldVector<adouble,6>>("effectiveQuadraticForm", {1.0, 1.0, 1.0, 0.0, 0.0, 0.0});
- // Dune::FieldMatrix<adouble,3,3> Qhom = {{(adouble)Qhomvec[0], (adouble)Qhomvec[3], (adouble)Qhomvec[4]},
- // {(adouble)Qhomvec[3], (adouble)Qhomvec[1], (adouble)Qhomvec[5]},
- // {(adouble)Qhomvec[4], (adouble)Qhomvec[5], (adouble)Qhomvec[2]}};
- // printmatrix(std::cout, Qhom, "effective quadratic form (Qhom): ", "--");
////////////////////////////////////////////////////////////////////////
// Create an assembler for the Discrete Kirchhoff Energy Functional (using ADOL-C)
////////////////////////////////////////////////////////////////////////
+ // The energy consists of two parts: 1. A bending energy contribution and 2. Contribution from a force term.
+ auto sumEnergy = std::make_shared<GFE::SumEnergy<CoefficientBasis, GFE::RealTuple<adouble,3>, GFE::Rotation<adouble,3> > >();
- /**
- * @brief Setup nonconforming energy
- */
- // auto localEnergy_nonconforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergy<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce);
- /**
- * @brief Setup conforming energy (WIP)
- */
- // auto localEnergy_conforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyZienkiewicz<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce);
- // auto localEnergy_conforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyZienkiewiczProjected<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce);
- /**
- * @brief Setup energy featuring prestrain
- */
- // auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce, Qhom, effectivePrestrain, parameterSet);
- auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce, parameterSet, pyModule);
-
- // LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_conforming(localEnergy_conforming.get());
- // LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_nonconforming(localEnergy_nonconforming.get());
- LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_prestrain(localEnergy_prestrain.get());
- // GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_conforming(coefficientBasis, localGFEADOLCStiffness_conforming);
- // GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_nonconforming(coefficientBasis, localGFEADOLCStiffness_nonconforming);
- GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_prestrain(coefficientBasis, localGFEADOLCStiffness_prestrain);
-
-
-
-
+ // Setup prestrained bending energy.
+ auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, ACoefficient> >(localDKFunction, parameterSet, pyModule);
+ // Setup force energy.
+ auto forceEnergy = std::make_shared<GFE::ForceEnergy<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient> >(localDKFunction, localForce);
+ sumEnergy->addLocalEnergy(localEnergy_prestrain);
+ sumEnergy->addLocalEnergy(forceEnergy);
+ // Setup the assembler.
+ auto localGFEADOLCStiffness_prestrain = std::make_shared<Dune::GFE::LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> >(sumEnergy);
+ std::shared_ptr<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> > assembler_prestrain;
+ assembler_prestrain = std::make_shared<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> >(coefficientBasis, localGFEADOLCStiffness_prestrain);
/**
- * @brief Create a solver:
- * - Riemannian Newton with Hessian modification
- * - Riemannian Trust-region
+ * @brief Create a solver:
+ * - Riemannian Newton with Hessian modification
+ * - Riemannian Trust-region
*/
- RiemannianProximalNewtonSolver<CoefficientBasis, Coefficient> RNHMsolver;
- RiemannianTrustRegionSolver<CoefficientBasis, Coefficient> RTRsolver;
+ Dune::GFE::RiemannianProximalNewtonSolver<CoefficientBasis, Coefficient> ARRNsolver;
+ Dune::GFE::RiemannianTrustRegionSolver<CoefficientBasis, Coefficient> RTRsolver;
- std::string Solver_name = parameterSet.get<std::string>("Solver", "RNHM");
+ std::string Solver_name = parameterSet.get<std::string>("Solver", "ARRN");
double numerical_energy; //final discrete energy
- if(Solver_name == "RNHM")
+ if(Solver_name == "ARRN")
{
- RNHMsolver.setup(*grid,
- &assembler_prestrain,
- isometryCoefficients,
- dirichletNodes,
- parameterSet);
+ ARRNsolver.setup(*grid,
+ &(*assembler_prestrain),
+ isometryCoefficients,
+ dirichletNodes,
+ parameterSet);
- RNHMsolver.solve();
- isometryCoefficients = RNHMsolver.getSol();
- numerical_energy = RNHMsolver.getStatistics().finalEnergy;
+ ARRNsolver.solve();
+ isometryCoefficients = ARRNsolver.getSol();
+ numerical_energy = ARRNsolver.getStatistics().finalEnergy;
} else if (Solver_name =="RiemannianTR")
{
std::cout << "Using Riemannian Trust-region method for energy minimization." << std::endl;
RTRsolver.setup(*grid,
- &assembler_prestrain,
- isometryCoefficients,
- dirichletNodes,
- parameterSet);
+ &(*assembler_prestrain),
+ isometryCoefficients,
+ dirichletNodes,
+ parameterSet);
RTRsolver.solve();
isometryCoefficients = RTRsolver.getSol();
numerical_energy = RTRsolver.getStatistics().finalEnergy;
- } else
- DUNE_THROW(Dune::Exception, "Unknown Solver type for bending isometries.");
+ } else
+ DUNE_THROW(Dune::Exception, "Unknown Solver type for bending isometries.");
// Convert coefficient data structure from 'IsometryCoefficients' to 'VectorSpaceCoefficients'
@@ -775,75 +340,44 @@ int main(int argc, char *argv[])
std::string baseNameDefault = "bending-isometries-";
std::string baseName = parameterSet.get("baseName", baseNameDefault);
std::string resultFileName = parameterSet.get("resultPath", "")
- + "/" + baseName
- + "_level" + std::to_string(parameterSet.get<int>("numLevels"));
+ + "/" + baseName
+ + "_level" + std::to_string(parameterSet.get<int>("numLevels"));
if (parameterSet.get<bool>("conforming_DiscreteJacobian", 1))
resultFileName = resultFileName + "_C";
- else
+ else
resultFileName = resultFileName + "_NC";
- // Create a deformation function but this time with double-types.
- using LocalDKFunctionD = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
+ // Create a deformation function but this time with double-types.
+ using LocalDKFunctionD = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
LocalDKFunctionD localDKFunctionDouble(deformationBasis, coefficientBasis, isometryCoefficients);
if (parameterSet.get<bool>("writeVTK", 1))
{
- std::cout << "write VTK..." << std::endl;
+ std::cout << "write VTK to Filename: " << resultFileName << std::endl;
/**
* @brief Compute the displacement from the deformation.
* interpolate the identity and substract from the coefficient vector.
*/
VectorSpaceCoefficients identity(deformationBasis.size());
- IdentityGridEmbedding<double> identityGridEmbedding;
+ Dune::GFE::Impl::IdentityGridEmbedding<double> identityGridEmbedding;
interpolate(deformationBasis, identity, identityGridEmbedding);
- // auto identity_tmp = identity;
-
// Compute the displacement
auto displacement = x_out;
displacement -= identity;
// std::cout << "displacement.size():" << displacement.size() << std::endl;
- auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x_out);
- auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, displacement);
+ auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, x_out);
+ auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, displacement);
/**
* @brief We need to subsample, because VTK cannot natively display real third-order functions
*/
int subsamplingRefinement = parameterSet.get<int>("subsamplingRefinement", 2);
SubsamplingVTKWriter<GridView> vtkWriter(gridView, Dune::refinementLevels(subsamplingRefinement));
- // SubsamplingVTKWriter<GridView> vtkWriter(gridView, Dune::refinementLevels(2));
-
-
-
- /**
- * @brief Basis used to represent normal vector fields
- *
- */
- auto normalBasis = makeBasis(gridView,
- power<3>(
- lagrange<1>(),
- flatLexicographic()));
- // auto normalBasis = makeBasis(gridView,
- // power<3>(
- // lagrange<1>(),
- // blockedInterleaved()));
-
-
- // TEST Compute
-
-
- // auto normalLambda = [deformationFunction](const FieldVector<double,2>& x)
- // {
- // // deformationfunction.derivative() ... //needs binding?!
-
-
- // }
-
-
/**
@@ -851,195 +385,111 @@ int main(int argc, char *argv[])
*/
if (parameterSet.get<bool>("vtkwrite_analyticalSolution", 0))
{
- // auto pythonAnalyticalSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("u"), pyModule.get("du"));
auto pythonAnalyticalSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("displacement"), pyModule.get("displacementGradient"));
-
-
- // deprecated: interpolate ...
- // VectorSpaceCoefficients y(deformationBasis.size());
- // interpolate(deformationBasis, y, pythonAnalyticalSolution);
- // // Compute the displacement
- // auto displacementAnalytical = y;
- // // displacementAnalytical -= identity_tmp;
- // displacementAnalytical -= identity;
-
-
- // auto pythonIdentity = Python::make_function<FieldVector<double,3>>(IdentityGridEmbedding<double>::operator())
-
-
- // auto displacementFunctionAnalytical = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, displacementAnalytical);
- // auto deformationFunctionAnalytical = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, y);
- // vtkWriter.addVertexData(displacementFunctionAnalytical, VTK::FieldInfo("displacement_analytical", VTK::FieldInfo::Type::vector, 3));
- // vtkWriter.addVertexData(deformationFunctionAnalytical, VTK::FieldInfo("deformation_analytical", VTK::FieldInfo::Type::vector, 3));
-
vtkWriter.addVertexData((pythonAnalyticalSolution), VTK::FieldInfo("displacement_analytical", VTK::FieldInfo::Type::vector, 3));
/**
- * @brief Get the normal vector field of the surface parametrized
+ * @brief Get the normal vector field of the surface parametrized
* by the analytical solution.
- * - We represent the normal vector in a first order Lagrange-Power basis ('normalBasis').
*/
if (parameterSet.get<bool>("vtkWrite_analyticalSurfaceNormal", 0))
{
- // Get the surface normal function.
- auto pythonSurfaceNormal = Python::make_function<FieldVector<double,3>>(pyModule.get("surfaceNormal"));
-
-
- // deprecated: interpolate ...
- // std::vector<FieldVector<double,3>> normalVectorCoefficients(normalBasis.size());
- // Dune::Functions::interpolate(normalBasis, normalVectorCoefficients, pythonSurfaceNormal);
- // auto surfaceNormalAnalytical = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(normalBasis, normalVectorCoefficients);
- // vtkWriter.addVertexData(surfaceNormalAnalytical, VTK::FieldInfo("surfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
-
- vtkWriter.addVertexData(pythonSurfaceNormal, VTK::FieldInfo("surfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
+ // Get the surface normal function.
+ auto pythonSurfaceNormal = Python::make_function<FieldVector<double,3> >(pyModule.get("surfaceNormal"));
+ vtkWriter.addVertexData(pythonSurfaceNormal, VTK::FieldInfo("surfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
}
}
- //------------------------------------------------------------------------------------- TODO: OUTSOURCE
- /**
- * @brief TEST: Compute the discrete normal vector of the surface parametrized
- * by the discrete solution.
- */
- auto surfaceNormalDiscreteCoefficients = computeDiscreteSurfaceNormal(localDKFunctionDouble, normalBasis);
//-------------------------------------------------------------------------------------
-
- // Create DiscreteGlobalBasisFunctions.
- auto surfaceNormalDiscrete = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(normalBasis, surfaceNormalDiscreteCoefficients);
vtkWriter.addVertexData(displacementFunction, VTK::FieldInfo("displacement", VTK::FieldInfo::Type::vector, 3));
- vtkWriter.addVertexData(surfaceNormalDiscrete , VTK::FieldInfo("surfaceNormal_discrete", VTK::FieldInfo::Type::vector, 3));
vtkWriter.write(resultFileName);
}
-
-
/**
* @brief Measure errors.
- * Compute the L2-Error and H1-SemiError as well as the energy difference
+ * Compute the L2-Error and H1-SemiError as well as the energy difference
* between the discrete deformation u_h and the analytical deformation u .
*/
+ // Read reference solution and its derivative into a Python function
+ auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("deformation"), pyModule.get("deformationGradient"));
+ auto referenceDerivative = derivative(referenceSolution);
- // auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x_out);
- // auto localNumericalSolution = localFunction(deformationFunction);
- // auto localNumericalSolutionDerivative = derivative(localNumericalSolution);
-
+ using LocalDKFunctionD = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
+ LocalDKFunctionD localDKFunctionD(deformationBasis, coefficientBasis, isometryCoefficients);
+ // QuadratureRule for the integral of the L^2 error
+ QuadratureRuleKey quadKey(dim,6);
+ // Trapezoidal-rule:
+ // std::vector<Dune::QuadraturePoint<double,2>> quadRule = { {{0.0,0.0}, 1.0/6.0}, {{1.0,0.0}, 1.0/6.0}, {{0.0,1.0}, 1.0/6.0} };
- // // Read reference solution and its derivative into a Python function
- // using Domain = FieldVector<double, dim>;
- // using Range = typename Coefficient::CoordinateType;
- // using Range = typename FieldVector<double,3>;
- // auto referenceSolution = Python::makeDifferentiableFunction<Range(Domain)>(pyModule.get("udu"));
- // auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(Domain)>(pyModule.get("udu"));
- // auto referenceDerivative = derivative(referenceSolution);
- // auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("u"), pyModule.get("du"));
- auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("deformation"), pyModule.get("deformationGradient"));
- auto referenceDerivative = derivative(referenceSolution);
-
- using LocalDKFunctionD = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
- LocalDKFunctionD localDKFunctionD(deformationBasis, coefficientBasis, isometryCoefficients);
-
- // typedef VirtualDifferentiableFunction<FieldVector<double, dim>, typename Coefficient::CoordinateType> FBase;
- // auto referenceSolution = pyModule.get("udu").toC<std::shared_ptr<FBase>>();
-
- // QuadratureRule for the integral of the L^2 error
- QuadratureRuleKey quadKey(dim,6);
+ // The error to be computed
+ double l2ErrorSquared = 0;
+ double h1ErrorSquared = 0;
+ for (auto&& element : elements(gridView))
+ {
+ localDKFunctionD.bind(element);
- // Trapezoidal-rule:
- // std::vector<Dune::QuadraturePoint<double,2>> quadRule = { {{0.0,0.0}, 1.0/6.0}, {{1.0,0.0}, 1.0/6.0}, {{0.0,1.0}, 1.0/6.0} };
- // std::cout << "Use Trapezoidal-rule." << std::endl;
+ // Get quadrature formula
+ quadKey.setGeometryType(element.type());
+ const auto& quadRule = QuadratureRuleCache<double, dim>::rule(quadKey);
- // The error to be computed
- double l2ErrorSquared = 0;
- double h1ErrorSquared = 0;
- for (auto&& element : elements(gridView))
+ for (auto quadPoint : quadRule)
{
+ auto quadPos = quadPoint.position();
+ const auto integrationElement = element.geometry().integrationElement(quadPos);
+ const auto weight = quadPoint.weight();
- // localNumericalSolution.bind(element);
-
- localDKFunctionD.bind(element);
-
- // Get quadrature formula
- quadKey.setGeometryType(element.type());
- const auto& quadRule = QuadratureRuleCache<double, dim>::rule(quadKey);
-
-
- for (auto quadPoint : quadRule)
- {
- auto quadPos = quadPoint.position();
- const auto integrationElement = element.geometry().integrationElement(quadPos);
- const auto weight = quadPoint.weight();
-
- // auto numValue = localNumericalSolution(quadPos);
- auto refValue = referenceSolution(element.geometry().global(quadPos));
- auto numValue = localDKFunctionD.evaluate(quadPos).globalCoordinates();
-
-
- // printvector(std::cout, numValue, "numValue: ", "--");
- // printvector(std::cout, refValue, "refValue: ", "--");
+ auto refValue = referenceSolution(element.geometry().global(quadPos));
+ auto numValue = localDKFunctionD.evaluate(quadPos).globalCoordinates();
- auto numDir = localDKFunctionD.evaluateDerivative(quadPos);
- auto refDir = referenceDerivative(element.geometry().global(quadPos));
- auto diff = numDir - refDir;
+ auto numDir = localDKFunctionD.evaluateDerivative(quadPos);
+ auto refDir = referenceDerivative(element.geometry().global(quadPos));
+ auto diff = numDir - refDir;
-
- // constexpr int blocksize = Coefficient::CoordinateType::dimension;
-
- // FieldVector<double, blocksize> refValue;
- // if (std::dynamic_pointer_cast<const VirtualGridViewFunction<GridView, FieldVector<double, blocksize>>>(referenceSolution))
- // std::dynamic_pointer_cast<const VirtualGridViewFunction<GridView, FieldVector<double, blocksize>>>(referenceSolution)->evaluateLocal(element, quadPos, refValue);
- // else
- // referenceSolution->evaluate(element.geometry().global(quadPos), refValue);
-
- // integrate error
- l2ErrorSquared += (numValue - refValue)* (numValue - refValue) * weight * integrationElement;
- h1ErrorSquared += diff.frobenius_norm2() * weight * integrationElement;
- }
+ // integrate error
+ l2ErrorSquared += (numValue - refValue)* (numValue - refValue) * weight * integrationElement;
+ h1ErrorSquared += diff.frobenius_norm2() * weight * integrationElement;
}
- std::cout << "elements: " << gridView.size(0)
- << " "
- << "L^2 error: " << std::sqrt(l2ErrorSquared)
- << " ";
- std::cout << "h^1 error: " << std::sqrt(h1ErrorSquared) << std::endl;
-
-
+ }
+ std::cout << "elements: " << gridView.size(0)
+ << " "
+ << "L^2 error: " << std::sqrt(l2ErrorSquared)
+ << " ";
+ std::cout << "h^1 error: " << std::sqrt(h1ErrorSquared) << std::endl;
+ //Check Quantities
+ if(std::sqrt(l2ErrorSquared) > 1.0)
+ {
+ std::cerr << std::setprecision(9);
+ std::cerr << "L2-error is to large! " << std::endl;
+ return 1;
+ }
+ if(std::sqrt(h1ErrorSquared) > 1.0)
+ {
+ std::cerr << std::setprecision(9);
+ std::cerr << "H1-error is to large! " << std::endl;
+ return 1;
+ }
+ // Compare energy values.
+ std::cout << "(Final) Energy of discrete solution: " << numerical_energy<< std::endl;
+ if (parameterSet.get<bool>("compare_EnergyValues", 0))
+ {
+ auto analytical_energy = parameterSet.get<double>("analytical_energy");
+ auto energy_difference = std::abs(analytical_energy - numerical_energy);
+ std::cout << "Analytical energy:" << analytical_energy<< std::endl; // (pi^2)/2.0
+ std::cout << "Energy difference: " << energy_difference << std::endl;
- //Check Quantities
- if(std::sqrt(l2ErrorSquared) > 1.0)
- {
- std::cerr << std::setprecision(9);
- std::cerr << "L2-error is to large! " << std::endl;
- return 1;
- }
- if(std::sqrt(h1ErrorSquared) > 1.0)
- {
- std::cerr << std::setprecision(9);
- std::cerr << "H1-error is to large! " << std::endl;
- return 1;
- }
- // Compare energy values.
- // auto numerical_energy = solver.getStatistics().finalEnergy;
- // auto analytical_energy = (M_PI*M_PI)/2.0 ;
- // auto analytical_energy = (M_PI*M_PI);
- std::cout << "(Final) Energy of discrete solution: " << numerical_energy<< std::endl;
- if (parameterSet.get<bool>("compare_EnergyValues", 0))
+ if(energy_difference > 1.0)
{
- auto analytical_energy = parameterSet.get<double>("analytical_energy");
- auto energy_difference = std::abs(analytical_energy - numerical_energy);
- std::cout << "Analytical energy:" << analytical_energy<< std::endl; // (pi^2)/2.0
- std::cout << "Energy difference: " << energy_difference << std::endl;
-
- if(energy_difference > 1.0)
- {
- std::cerr << std::setprecision(9);
- std::cerr << "Energy difference: " << energy_difference << " is to large! " << std::endl;
- return 1;
- }
+ std::cerr << std::setprecision(9);
+ std::cerr << "Energy difference: " << energy_difference << " is to large! " << std::endl;
+ return 1;
}
+ }
std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
std::cout << "Test: analyticalcylindertest passed." << std::endl;
return 0;
- }
\ No newline at end of file
+}
diff --git a/test/hermitebasis-evaluation-test.cc b/test/hermitebasis-evaluation-test.cc
index 96de70cbe1974dac9681c406d0c25c6d5939c861..3016ce176331c0f4b5e344aa91c81131db556c1c 100644
--- a/test/hermitebasis-evaluation-test.cc
+++ b/test/hermitebasis-evaluation-test.cc
@@ -64,7 +64,7 @@ using namespace Dune;
/**
* @brief Test the interpolation in deformation space.
* A linear isometry can be represented exactly in that space.
- * compare energy values / L2-error / H1-error
+ * compare energy values / L2-error / H1-error
* for die difference | I_h[u] - u | where u is a given analytic linear isometry
*/
@@ -84,9 +84,9 @@ int main(int argc, char *argv[])
Python::start();
auto pyMain = Python::main();
pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
auto pyModule = pyMain.import("hermitebasis-evaluation-test");
// parse data file
@@ -105,8 +105,8 @@ int main(int argc, char *argv[])
/////////////////////////////////////////
using GridType = UGGrid<dim>;
std::shared_ptr<GridType> grid;
-// FieldVector<double,dim> lower(0), upper(1);
-// std::array<unsigned int,dim> elementsArray;
+ // FieldVector<double,dim> lower(0), upper(1);
+ // std::array<unsigned int,dim> elementsArray;
// create unstructured grid.
std::cout << "Read GMSH grid." << std::endl;
@@ -128,7 +128,7 @@ int main(int argc, char *argv[])
///////////////////////////////////////////////////////
// General coefficient vector of a Discrete Kirchhoff deformation function
- using VectorSpaceCoefficients = BlockVector<FieldVector<double,3>>;
+ using VectorSpaceCoefficients = BlockVector<FieldVector<double,3> >;
using namespace Functions::BasisFactory;
auto deformationBasis = makeBasis(gridView,
@@ -157,18 +157,18 @@ int main(int argc, char *argv[])
std::string baseNameDefault = "bending-isometries-";
std::string baseName = parameterSet.get("baseName", baseNameDefault);
std::string resultFileName = parameterSet.get("resultPath", "")
- + "/" + baseName
- + "_level" + std::to_string(parameterSet.get<int>("numLevels"));
+ + "/" + baseName
+ + "_level" + std::to_string(parameterSet.get<int>("numLevels"));
if (parameterSet.get<bool>("conforming_DiscreteJacobian", 1))
resultFileName = resultFileName + "_C";
- else
+ else
resultFileName = resultFileName + "_NC";
/**
- * @brief Compute the displacement from the deformation.
- * interpolate the identity and substract from the coefficient vector.
- */
+ * @brief Compute the displacement from the deformation.
+ * interpolate the identity and substract from the coefficient vector.
+ */
VectorSpaceCoefficients identity(deformationBasis.size());
IdentityGridEmbedding<double> identityGridEmbedding;
interpolate(deformationBasis, identity, identityGridEmbedding);
@@ -176,8 +176,8 @@ int main(int argc, char *argv[])
auto displacement = x;
displacement -= identity;
- auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x);
- auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, displacement);
+ auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, x);
+ auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, displacement);
auto deformationFunctionLocal = localFunction(deformationFunction);
auto deformationFunctionLocalDerivative = derivative(deformationFunctionLocal);
@@ -211,77 +211,77 @@ int main(int argc, char *argv[])
/**
- * @brief Compute the L2-Error and H1-SemiError between the discrete deformation u_h and the analytical deformation u
- *
+ * @brief Compute the L2-Error and H1-SemiError between the discrete deformation u_h and the analytical deformation u
+ *
*/
- auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("deformation"), pyModule.get("deformationGradient"));
- auto referenceDerivative = derivative(referenceSolution);
+ auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("deformation"), pyModule.get("deformationGradient"));
+ auto referenceDerivative = derivative(referenceSolution);
- // QuadratureRule for the integral of the L^2 error
- QuadratureRuleKey quadKey(dim,6);
+ // QuadratureRule for the integral of the L^2 error
+ QuadratureRuleKey quadKey(dim,6);
- // The error to be computed
- double l2ErrorSquared = 0;
- double h1ErrorSquared = 0;
+ // The error to be computed
+ double l2ErrorSquared = 0;
+ double h1ErrorSquared = 0;
- for (auto&& element : elements(gridView))
- {
+ for (auto&& element : elements(gridView))
+ {
- deformationFunctionLocal.bind(element);
- deformationFunctionLocalDerivative.bind(element);
+ deformationFunctionLocal.bind(element);
+ deformationFunctionLocalDerivative.bind(element);
- // Get quadrature formula
- quadKey.setGeometryType(element.type());
- const auto& quad = QuadratureRuleCache<double, dim>::rule(quadKey);
+ // Get quadrature formula
+ quadKey.setGeometryType(element.type());
+ const auto& quad = QuadratureRuleCache<double, dim>::rule(quadKey);
- for (auto quadPoint : quad)
- {
- auto quadPos = quadPoint.position();
- const auto integrationElement = element.geometry().integrationElement(quadPos);
- const auto weight = quadPoint.weight();
+ for (auto quadPoint : quad)
+ {
+ auto quadPos = quadPoint.position();
+ const auto integrationElement = element.geometry().integrationElement(quadPos);
+ const auto weight = quadPoint.weight();
- auto refValue = referenceSolution(element.geometry().global(quadPos));
- auto numValue = deformationFunctionLocal(quadPos);
+ auto refValue = referenceSolution(element.geometry().global(quadPos));
+ auto numValue = deformationFunctionLocal(quadPos);
- auto numDir = deformationFunctionLocalDerivative(quadPos);
- auto refDir = referenceDerivative(element.geometry().global(quadPos));
- auto diff = numDir - refDir;
+ auto numDir = deformationFunctionLocalDerivative(quadPos);
+ auto refDir = referenceDerivative(element.geometry().global(quadPos));
+ auto diff = numDir - refDir;
- // // print evaluation difference
- // std::cout << "Evaluation difference at quadPoint:(" << element.geometry().global(quadPos) << ") is : "<< numValue-refValue << std::endl;
- std::cout << "Evaluation difference (of derivative) at quadPoint:(" << element.geometry().global(quadPos) << ") is : "<< diff << std::endl;
- // print discrete function evaluation
- // std::cout << "Evaluation of discreteGlobalBasisFunction at quadPoint:(" << element.geometry().global(quadPos) << ") is : "<< numValue << std::endl;
- std::cout << "Evaluation of discreteGlobalBasisFunction-derivative at quadPoint:(" << element.geometry().global(quadPos) << ") is : "<< numDir << std::endl;
+ // // print evaluation difference
+ // std::cout << "Evaluation difference at quadPoint:(" << element.geometry().global(quadPos) << ") is : "<< numValue-refValue << std::endl;
+ std::cout << "Evaluation difference (of derivative) at quadPoint:(" << element.geometry().global(quadPos) << ") is : "<< diff << std::endl;
+ // print discrete function evaluation
+ // std::cout << "Evaluation of discreteGlobalBasisFunction at quadPoint:(" << element.geometry().global(quadPos) << ") is : "<< numValue << std::endl;
+ std::cout << "Evaluation of discreteGlobalBasisFunction-derivative at quadPoint:(" << element.geometry().global(quadPos) << ") is : "<< numDir << std::endl;
- // integrate error
- l2ErrorSquared += (numValue - refValue)* (numValue - refValue) * weight * integrationElement;
- h1ErrorSquared += diff.frobenius_norm2() * weight * integrationElement;
- }
- }
- std::cout << "elements: " << gridView.size(0)
- << " "
- << "L^2 error: " << std::sqrt(l2ErrorSquared)
- << " ";
- std::cout << "h^1 error: " << std::sqrt(h1ErrorSquared) << std::endl;
-
-
- //Check Quantities
- if( std::sqrt(l2ErrorSquared) > 1e-12)
- {
- std::cerr << std::setprecision(9);
- std::cerr << "L2-error is to large! " << std::endl;
- return 1;
- }
- if( std::sqrt(h1ErrorSquared) > 1e-12)
- {
- std::cerr << std::setprecision(9);
- std::cerr << "H1-error is to large! " << std::endl;
- return 1;
+ // integrate error
+ l2ErrorSquared += (numValue - refValue)* (numValue - refValue) * weight * integrationElement;
+ h1ErrorSquared += diff.frobenius_norm2() * weight * integrationElement;
}
+ }
+ std::cout << "elements: " << gridView.size(0)
+ << " "
+ << "L^2 error: " << std::sqrt(l2ErrorSquared)
+ << " ";
+ std::cout << "h^1 error: " << std::sqrt(h1ErrorSquared) << std::endl;
+
+
+ //Check Quantities
+ if( std::sqrt(l2ErrorSquared) > 1e-12)
+ {
+ std::cerr << std::setprecision(9);
+ std::cerr << "L2-error is to large! " << std::endl;
+ return 1;
+ }
+ if( std::sqrt(h1ErrorSquared) > 1e-12)
+ {
+ std::cerr << std::setprecision(9);
+ std::cerr << "H1-error is to large! " << std::endl;
+ return 1;
+ }
std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
std::cout << "Test: hermitebasis-evaluation-test passed." << std::endl;
return 0;
- }
\ No newline at end of file
+}
diff --git a/test/linearisometrytest.cc b/test/linearisometrytest.cc
index 905119b539397734ca1ea4da9cccf208396bf447..2d55b69846838221f37a53f495fcbdd8668ebc1c 100644
--- a/test/linearisometrytest.cc
+++ b/test/linearisometrytest.cc
@@ -13,27 +13,26 @@
#include <dune/fufem/utilities/adolcnamespaceinjections.hh>
#include <dune/common/typetraits.hh>
-
#include <dune/common/bitsetvector.hh>
#include <dune/common/parametertree.hh>
#include <dune/common/parametertreeparser.hh>
#include <dune/grid/uggrid.hh>
#include <dune/grid/utility/structuredgridfactory.hh>
-
#include <dune/grid/io/file/gmshreader.hh>
#include <dune/grid/io/file/vtk.hh>
#include <dune/functions/gridfunctions/discreteglobalbasisfunction.hh>
+#include <dune/functions/gridfunctions/composedgridfunction.hh>
+#include <dune/functions/functionspacebases/cubichermitebasis.hh>
#include <dune/functions/functionspacebases/lagrangebasis.hh>
#include <dune/functions/functionspacebases/powerbasis.hh>
#include <dune/functions/functionspacebases/interpolate.hh>
-#include <dune/functions/functionspacebases/reducedcubichermitetrianglebasis.hh>
+
#include <dune/fufem/boundarypatch.hh>
#include <dune/fufem/functiontools/boundarydofs.hh>
#include <dune/fufem/dunepython.hh>
-
#include <dune/fufem/discretizationerror.hh>
#include <dune/solvers/solvers/iterativesolver.hh>
@@ -42,24 +41,21 @@
#include <dune/gfe/spaces/productmanifold.hh>
#include <dune/gfe/spaces/realtuple.hh>
#include <dune/gfe/spaces/rotation.hh>
-#include <dune/gfe/localdiscretekirchhoffbendingisometry.hh>
+#include <dune/gfe/functions/discretekirchhoffbendingisometry.hh>
+#include <dune/gfe/functions/embeddedglobalgfefunction.hh>
+#include <dune/gfe/functions/localprojectedfefunction.hh>
#include <dune/gfe/assemblers/localgeodesicfeadolcstiffness.hh>
-#include <dune/gfe/assemblers/harmonicenergy.hh>
#include <dune/gfe/assemblers/geodesicfeassembler.hh>
+#include <dune/gfe/assemblers/discretekirchhoffbendingenergy.hh>
+#include <dune/gfe/assemblers/forceenergy.hh>
+#include <dune/gfe/assemblers/sumenergy.hh>
+#include <dune/gfe/bendingisometryhelper.hh>
#include <dune/gfe/riemannianpnsolver.hh>
-#include <dune/gfe/embeddedglobalgfefunction.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergy.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyconforming.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewicz.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewiczprojected.hh>
-// #include <dune/gfe/energies/discretekirchhoffbendingenergyprestrained.hh>
+#include <dune/gfe/riemanniantrsolver.hh>
+#include <dune/microstructure/bendingisometryaddons.hh>
#include <dune/microstructure/energies/discretekirchhoffbendingenergyprestrained.hh>
-#include <dune/gfe/spaces/stiefelmanifold.hh>
-// #include <dune/gfe/spaces/stiefelmatrix.hh>
-
-
#include <dune/gmsh4/gmsh4reader.hh>
#include <dune/gmsh4/gridcreators/lagrangegridcreator.hh>
@@ -67,341 +63,17 @@ const int dim = 2;
using namespace Dune;
-
/**
* @brief Test the interpolation in deformation space.
* A linear isometry can be represented exactly in that space.
- * compare energy values / L2-error / H1-error
+ * compare energy values / L2-error / H1-error
* for die difference | I_h[u] - u | where u is a given analytic linear isometry
*/
-// /**
-// * @brief Comparison of different function definitions for debugging purposes.
-// * TODO: remove later
-// */
-// template<class LocalDiscreteKirchhoffFunction,class DeformationFunction, class GridView>
-// auto compare(LocalDiscreteKirchhoffFunction& kirchhoffFunction,
-// DeformationFunction& deformationFunction,
-// GridView& gridView)
-// {
-// std::cout << "COMPARE:" << std::endl;
-// auto localDeformation = localFunction(deformationFunction);
-// auto rotation = derivative(deformationFunction);
-// auto localRotation = localFunction(rotation);
-// auto localRotation_2 = derivative(localDeformation);
-// for (const auto &element : elements(gridView))
-// {
-// auto geometry = element.geometry();
-
-// kirchhoffFunction.bind(element);
-// localDeformation.bind(element);
-// localRotation.bind(element);
-// localRotation_2.bind(element);
-
-// //evaluate at nodes:
-// for (int i=0; i<geometry.corners(); i++)
-// {
-// auto kirchhoffOut = kirchhoffFunction.evaluate(geometry.local(geometry.corner(i))).globalCoordinates();
-// auto KirchhoffRot = kirchhoffFunction.evaluateDerivative(geometry.local(geometry.corner(i)));
-// //Test
-// const auto& jacobian = geometry.jacobian(geometry.corner(i));
-// printmatrix(std::cout, jacobian, "jacobianInverse:", "--");
-
-// auto defOut = localDeformation(geometry.local(geometry.corner(i)));
-// auto defRot = localRotation(geometry.local(geometry.corner(i)));
-// auto defRot_2 = localRotation_2(geometry.local(geometry.corner(i)));
-
-// printvector(std::cout, kirchhoffOut, "kirchhoffOut:", "--");
-// printvector(std::cout, defOut, "defOut:", "--");
-// printmatrix(std::cout, KirchhoffRot, "KirchhoffRot:", "--");
-// printmatrix(std::cout, defRot, "defRot:", "--");
-// // printmatrix(std::cout, defRot*jacobian, "defRot*jacobian:", "--"); // deprecated: when ReducedCubicHermite returned values in globalCoordinates, this was actually neccessary to get the right values.
-// }
-// }
-// }
-
-
-// /**
-// * @brief Test that checks the isometry constraint at the nodes of the Triangulation
-// */
-// template<class LocalDiscreteKirchhoffFunction, class GridView>
-// auto nodewiseIsometryTest(LocalDiscreteKirchhoffFunction& deformationFunction,
-// GridView& gridView)
-// {
-// for (const auto &element : elements(gridView))
-// {
-// auto geometry = element.geometry();
-// deformationFunction.bind(element);
-// // evaluate at nodes:
-// for (int i=0; i<geometry.corners(); i++)
-// {
-// // auto out = deformationFunction.evaluate(geometry.local(geometry.corner(i))).globalCoordinates();
-// auto rot = deformationFunction.evaluateDerivative(geometry.local(geometry.corner(i)));
-// FieldMatrix<double,2,2> I = ScaledIdentityMatrix<double,2>(1);
-// auto diff = (rot.transposed()*rot) - I;
-// // std::cout << "diff.frobenius_norm():" << diff.frobenius_norm() << std::endl;
-// if(diff.frobenius_norm()>1e-8)
-// DUNE_THROW(Exception, "Nodewise Isometry Test failed! with error"<< diff.frobenius_norm());
-// }
-// }
-// std::cout << "nodewiseIsometryTest passed." << std::endl;
-// }
-
-
-// template<class DeformationFunction>
-// auto nodewiseIsometryTest(DeformationFunction& deformationGridViewFunction)
-// {
-// auto localDeformation = localFunction(deformationGridViewFunction);
-// auto localRotation = derivative(localDeformation);
-// auto gridView = deformationGridViewFunction.basis().gridView();
-// for (const auto &element : elements(gridView))
-// {
-// auto geometry = element.geometry();
-// localDeformation.bind(element);
-// localRotation.bind(element);
-
-// // evaluate at nodes:
-// for (int i=0; i<geometry.corners(); i++)
-// {
-// auto rot = localRotation(geometry.local(geometry.corner(i)));
-// auto product = rot.transposed()*rot;
-
-// FieldMatrix<double,2,2> I = ScaledIdentityMatrix<double,2>(1);
-// auto diff = (rot.transposed()*rot) - I;
-
-// if(diff.frobenius_norm()>1e-8)
-// DUNE_THROW(Exception, "Nodewise Isometry Test failed! with error"<< diff.frobenius_norm());
-// }
-// }
-// std::cout << "nodewiseIsometryTest passed." << std::endl;
-// }
-
-
-
-// /** \brief The identity function in R^d, and its derivative
-// *
-// * This is needed to compute the displacement from the deformation (for visualization).
-// * Since we want to represent it in a Hermite finite element space, we need
-// * the derivative as well.
-// *
-// * Is there no shorter way to implement this?
-// */
-// template<class K>
-// class IdentityGridEmbedding
-// {
-// public:
-// //! Evaluate identity
-// FieldVector<K,3> operator() (const FieldVector<K,2>& x) const
-// {
-// return {x[0], x[1], 0.0};
-// }
-
-// /**
-// * \brief Obtain derivative of identity function
-// */
-// friend auto derivative(const IdentityGridEmbedding& p)
-// {
-// return [](const FieldVector<K,dim>& x) { return FieldMatrix<K,3,2>({{1,0}, {0,1}, {0,0}}); };
-// }
-// };
-
-// /** \brief Project a vector field onto a product of ReducedHermiteTriangle spaces
-// *
-// * \todo This functionality should be provided by dune-functions. It currently isn't,
-// * because ReducedHermiteTriangleBasis is not an affine finite element.
-// */
-// template <class Basis, class Coefficients, class Function>
-// void interpolate(const Basis& basis, Coefficients& coefficients, Function& f)
-// {
-// coefficients.resize(basis.size());
-// // coefficients.resize(basis.dimension());
-// auto localView = basis.localView();
-
-// for (auto&& e : elements(basis.gridView()))
-// {
-// localView.bind(e);
-
-// // Loop over the corners
-// for (std::size_t i=0; i<3; i++)
-// {
-// auto pos = e.geometry().corner(i);
-// auto value = f(pos);
-// auto der = derivative(f)(pos);
-
-// // printvector(std::cout, value, "value:", "--");
-// // printmatrix(std::cout, der, "der:", "--");
-
-// // std::cout << "sin(x):" << sin(pos[0]) << std::endl;
-// // std::cout << "cos(x):" << cos(pos[0]) << std::endl;
-// // printvector(std::cout, pos, "pos: ", "--");
-
-// // Loop over components of power basis
-// for(std::size_t k=0; k<3 ; k++)
-// {
-// auto localIdx_0 = localView.tree().child(k).localIndex(i); // index for values
-// auto localIdx_1 = localView.tree().child(k).localIndex(i+3); // index for partial derivatives w.r.t. x
-// auto localIdx_2 = localView.tree().child(k).localIndex(i+6); // index for partial derivatives w.r.t. y
-// // std::cout << "localIdx_0: " << localIdx_0 << std::endl;
-// // std::cout << "localIdx_1: " << localIdx_1 << std::endl;
-// // std::cout << "localIdx_2: " << localIdx_2 << std::endl;
-
-// auto globalIdx_0 = localView.index(localIdx_0);
-// auto globalIdx_1 = localView.index(localIdx_1);
-// auto globalIdx_2 = localView.index(localIdx_2);
-// // std::cout << "globalIdx_0: " << globalIdx_0 << std::endl;
-// // std::cout << "globalIdx_1: " << globalIdx_1 << std::endl;
-// // std::cout << "globalIdx_2: " << globalIdx_2 << std::endl;
-
-// coefficients[globalIdx_0[0]][globalIdx_0[1]] = value[k];
-// coefficients[globalIdx_1[0]][globalIdx_1[1]] = der[k][0];
-// coefficients[globalIdx_2[0]][globalIdx_2[1]] = der[k][1];
-// }
-// }
-
-// }
-// }
-
-// /**
-// * @brief Data structure conversion from 'VectorSpaceCoefficients' to 'IsometryCoefficients'.
-// * TODO: Throw an error if rotation-part is not orthogonal? (expensive to check)
-// */
-// template<class DiscreteKirchhoffBasis, class CoefficientBasis, class Coefficients, class IsometryCoefficients>
-// void vectorToIsometryCoefficientMap(const DiscreteKirchhoffBasis& discreteKirchhoffBasis,
-// const CoefficientBasis& coefficientBasis,
-// const Coefficients& vectorCoefficients,
-// IsometryCoefficients& isometryCoefficients)
-// {
-// std::cout << "calling vectorToIsometryCoefficientMap" << std::endl;
-// auto localView = discreteKirchhoffBasis.localView();
-// auto localViewCoefficients = coefficientBasis.localView();
-
-// using RT = typename IsometryCoefficients::value_type::ctype;
-
-// for (const auto &element : elements(coefficientBasis.gridView()))
-// {
-// localView.bind(element);
-// localViewCoefficients.bind(element);
-
-// // Loop over the corners
-// for (std::size_t c=0; c<3; c++)
-// {
-// size_t localIdxOut = localViewCoefficients.tree().localIndex(c);
-// size_t globalIdxOut = localViewCoefficients.index(localIdxOut);
-
-// FieldVector<RT,3> currentDeformation(0);
-// FieldVector<RT,3> currentDerivative_x(0);
-// FieldVector<RT,3> currentDerivative_y(0);
-
-// // Loop over components of power basis
-// for(std::size_t k=0; k<3 ; k++)
-// {
-// auto localIdx_0 = localView.tree().child(k).localIndex(c); // index for values
-// auto localIdx_1 = localView.tree().child(k).localIndex(c+3); // index for partial derivatives w.r.t. x
-// auto localIdx_2 = localView.tree().child(k).localIndex(c+6); // index for partial derivatives w.r.t. y
-// // std::cout << "localIdx_0: " << localIdx_0 << std::endl;
-// // std::cout << "localIdx_1: " << localIdx_1 << std::endl;
-// // std::cout << "localIdx_2: " << localIdx_2 << std::endl;
-
-// auto globalIdx_0 = localView.index(localIdx_0);
-// auto globalIdx_1 = localView.index(localIdx_1);
-// auto globalIdx_2 = localView.index(localIdx_2);
-
-// // blockedInterleaved -- Version
-// currentDeformation[k] = vectorCoefficients[globalIdx_0[0]][globalIdx_0[1]];
-// currentDerivative_x[k] = vectorCoefficients[globalIdx_1[0]][globalIdx_1[1]];
-// currentDerivative_y[k] = vectorCoefficients[globalIdx_2[0]][globalIdx_2[1]];
-
-// }
-
-// //cross product to get last column of rotation matrix
-// FieldVector<RT,3> cross = {currentDerivative_x[1]*currentDerivative_y[2] - currentDerivative_x[2]*currentDerivative_y[1],
-// currentDerivative_x[2]*currentDerivative_y[0] - currentDerivative_x[0]*currentDerivative_y[2],
-// currentDerivative_x[0]*currentDerivative_y[1] - currentDerivative_x[1]*currentDerivative_y[0]};
-
-// FieldMatrix<RT,3,3> rotMatrix(0);
-// for(std::size_t k=0; k<3 ; k++)
-// {
-// rotMatrix[k][0] = currentDerivative_x[k];
-// rotMatrix[k][1] = currentDerivative_y[k];
-// rotMatrix[k][2] = cross[k];
-// }
-// // printmatrix(std::cout, rotMatrix, "rotMatrix:", "--");
-// using namespace Dune::Indices;
-// isometryCoefficients[globalIdxOut][_1].set(rotMatrix); //TODO: Throw if matrix is not orthogonal?
-// isometryCoefficients[globalIdxOut][_0] = (RealTuple<RT, 3>)currentDeformation;
-// }
-// }
-// }
-
-
-// /**
-// * @brief Data structure conversion from 'IsometryCoefficients' to 'VectorSpaceCoefficients'.
-// */
-// template<class DiscreteKirchhoffBasis, class CoefficientBasis, class Coefficients, class IsometryCoefficients>
-// void isometryToVectorCoefficientMap(const DiscreteKirchhoffBasis& discreteKirchhoffBasis,
-// const CoefficientBasis& coefficientBasis,
-// Coefficients& coefficients,
-// const IsometryCoefficients& isometryCoefficients)
-// {
-// std::cout << "calling isometryToVectorCoefficientMap" << std::endl;
-// auto localView = discreteKirchhoffBasis.localView();
-// auto localViewCoefficients = coefficientBasis.localView();
-
-// for (const auto &element : elements(coefficientBasis.gridView()))
-// {
-// localView.bind(element);
-// localViewCoefficients.bind(element);
-
-// // Loop over the corners
-// for (std::size_t c=0; c<3; c++)
-// {
-// size_t localIdx = localViewCoefficients.tree().localIndex(c);
-// size_t globalIdx = localViewCoefficients.index(localIdx);
-
-// // Loop over components of power basis
-// for(std::size_t k=0; k<3 ; k++)
-// {
-// auto localIdx_0 = localView.tree().child(k).localIndex(c); // index for values
-// auto localIdx_1 = localView.tree().child(k).localIndex(c+3); // index for partial derivatives w.r.t. x
-// auto localIdx_2 = localView.tree().child(k).localIndex(c+6); // index for partial derivatives w.r.t. y
-// // std::cout << "localIdx_0: " << localIdx_0 << std::endl;
-// // std::cout << "localIdx_1: " << localIdx_1 << std::endl;
-// // std::cout << "localIdx_2: " << localIdx_2 << std::endl;
-
-// auto globalIdxOut_0 = localView.index(localIdx_0);
-// auto globalIdxOut_1 = localView.index(localIdx_1);
-// auto globalIdxOut_2 = localView.index(localIdx_2);
-
-// using namespace Dune::Indices;
-// auto deformation = isometryCoefficients[globalIdx][_0].globalCoordinates();
-// auto rotation1 = isometryCoefficients[globalIdx][_1].director(0);
-// auto rotation2 = isometryCoefficients[globalIdx][_1].director(1);
-
-// coefficients[globalIdxOut_0[0]][globalIdxOut_0[1]] = deformation[k];
-// coefficients[globalIdxOut_1[0]][globalIdxOut_1[1]] = rotation1[k];
-// coefficients[globalIdxOut_2[0]][globalIdxOut_2[1]] = rotation2[k];
-// }
-// }
-// }
-// }
-
-
int main(int argc, char *argv[])
{
- /**
- * @brief We use this to catch a 'Floating point exception' caused by the 'innerSolver'
- * in RiemannianProximalNewton
- */
- std::shared_ptr<void(int)> handler(
- signal(SIGFPE, [](int signum) {throw std::logic_error("FPE"); }),
- [](__sighandler_t f) { signal(SIGFPE, f); });
-
-
-
- feenableexcept(FE_INVALID);
-
MPIHelper::instance(argc, argv);
Dune::Timer globalTimer;
@@ -415,9 +87,9 @@ int main(int argc, char *argv[])
Python::start();
auto pyMain = Python::main();
pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
auto pyModule = pyMain.import("linearisometrytest");
// parse data file
@@ -436,9 +108,6 @@ int main(int argc, char *argv[])
/////////////////////////////////////////
using GridType = UGGrid<dim>;
std::shared_ptr<GridType> grid;
-// FieldVector<double,dim> lower(0), upper(1);
-// std::array<unsigned int,dim> elementsArray;
-
// create unstructured grid.
std::cout << "Read GMSH grid." << std::endl;
GridFactory<GridType> factory;
@@ -459,16 +128,16 @@ int main(int argc, char *argv[])
///////////////////////////////////////////////////////
// General coefficient vector of a Discrete Kirchhoff deformation function
- using VectorSpaceCoefficients = BlockVector<FieldVector<double,3>>;
+ using VectorSpaceCoefficients = BlockVector<FieldVector<double,3> >;
// Coefficient vector of a Discrete Kirchhoff deformation function that is constrained to be an isometry
- using Coefficient = GFE::ProductManifold<RealTuple<double,3>, Rotation<double,3> >;
+ using Coefficient = GFE::ProductManifold<GFE::RealTuple<double,3>, GFE::Rotation<double,3> >;
using IsometryCoefficients = std::vector<Coefficient>;
using namespace Functions::BasisFactory;
auto deformationBasis = makeBasis(gridView,
- power<3>(reducedCubicHermiteTriangle(),
+ power<3>(reducedCubicHermite(),
blockedInterleaved()));
@@ -480,36 +149,40 @@ int main(int argc, char *argv[])
// A basis for the tangent space (used to set DirichletNodes)
auto tangentBasis = makeBasis(gridView,
power<Coefficient::TangentVector::dimension>(
- lagrange<1>(),
- blockedInterleaved()));
+ lagrange<1>(),
+ blockedInterleaved()));
///////////////////////////////////////////
- // Read Dirichlet values
+ // Read Dirichlet values
///////////////////////////////////////////
- BitSetVector<1> dirichletVertices(gridView.size(dim), false);
const typename GridView::IndexSet &indexSet = gridView.indexSet();
+ BitSetVector<Coefficient::TangentVector::dimension> dirichletNodes(tangentBasis.size(), false); //tangentBasis.size()=coefficientBasis.size()
// Make Python function that computes which vertices are on the Dirichlet boundary,
// based on the vertex positions.
auto dirichletIndicatorFunction = Python::make_function<bool>(pyModule.get("dirichlet_indicator"));
+ // If we want to clamp DOFs inside the domain, we cannot use 'BoundaryPatch'
+ // and 'constructBoundaryDofs'. This is a workaround for now.
for (auto &&vertex : vertices(gridView))
- dirichletVertices[indexSet.index(vertex)] = dirichletIndicatorFunction(vertex.geometry().corner(0));
+ {
+ if(dirichletIndicatorFunction(vertex.geometry().corner(0)))
+ {
+ dirichletNodes[indexSet.index(vertex)] = true;
+ }
- BoundaryPatch<GridView> dirichletBoundary(gridView, dirichletVertices);
- BitSetVector<Coefficient::TangentVector::dimension> dirichletNodes(tangentBasis.size(), false);
- constructBoundaryDofs(dirichletBoundary, tangentBasis, dirichletNodes);
+ }
+ // deprecated:
+ // BoundaryPatch<GridView> dirichletBoundary(gridView, dirichletVertices);
+ // constructBoundaryDofs(dirichletBoundary, tangentBasis, dirichletNodes);
///////////////////////////////////////////
// Get initial Iterate
///////////////////////////////////////////
auto pythonInitialIterate = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("f"), pyModule.get("df"));
-
VectorSpaceCoefficients x(deformationBasis.size());
-
- IdentityGridEmbedding<double> identityGridEmbedding;
- // interpolate(deformationBasis, x, identityGridEmbedding);
+ Dune::GFE::Impl::IdentityGridEmbedding<double> identityGridEmbedding;
interpolate(deformationBasis, x, pythonInitialIterate); // Interpolation on a python function
////////////////////////////////////////////////////////////////////////
@@ -522,8 +195,8 @@ int main(int argc, char *argv[])
/**
- * @brief We need to setup LocalDiscreteKirchhoffBendingIsometry with a coefficient
- * vector of ctype 'adouble' while the solver gets a coefficient vector
+ * @brief We need to setup LocalDiscreteKirchhoffBendingIsometry with a coefficient
+ * vector of ctype 'adouble' while the solver gets a coefficient vector
* of ctype 'double'.
*/
IsometryCoefficients isometryCoefficients(coefficientBasis.size());
@@ -535,40 +208,19 @@ int main(int argc, char *argv[])
std::cout << "deformationBasis.dimension():" << deformationBasis.dimension() << std::endl;
- /**
- * @brief TEST: compute isometry error
- */
- auto initialDeformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x);
- // nodewiseIsometryTest(initialDeformationFunction);
-
+ // Test TEST: compute isometry error
+ auto initialDeformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, x);
+ nodewiseIsometryTest(initialDeformationFunction);
+ using namespace Dune::GFE::Impl;
// Convert coefficient data structure from 'VectorSpaceCoefficients' to 'IsometryCoefficients'
vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients);
vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients_adouble);
-
- /**
- * @brief TEST: conversion of coefficient vectors (back & forth)
- */
- VectorSpaceCoefficients x_convert = x;
- IsometryCoefficients isometryCoefficientsTMP(coefficientBasis.size());
- vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x_convert,isometryCoefficientsTMP);
- isometryToVectorCoefficientMap(deformationBasis,coefficientBasis,x_convert,isometryCoefficientsTMP);
- //Check difference
- for(int i=0; i<x.size(); i++)
- {
- if((x[i]-x_convert[i]).two_norm() > 1e-4)
- std::cout << "Coefficient conversion failed! with x[i]-x_convert[i]:" << x[i]-x_convert[i] << std::endl;
- }
-
-
-
-
-
using DeformationBasis = decltype(deformationBasis);
- using LocalDKFunction = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, AIsometryCoefficients>;
+ using LocalDKFunction = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, AIsometryCoefficients>;
LocalDKFunction localDKFunction(deformationBasis, coefficientBasis, isometryCoefficients_adouble);
nodewiseIsometryTest(localDKFunction, gridView);
@@ -577,7 +229,7 @@ int main(int argc, char *argv[])
/**
* @brief Get force term
*/
- auto pythonForce = Python::make_function<FieldVector<double,3>>(pyModule.get("force"));
+ auto pythonForce = Python::make_function<FieldVector<double,3> >(pyModule.get("force"));
// auto forceGVF = Dune::Functions::makeGridViewFunction(dummyForce, gridView);
auto forceGVF = Dune::Functions::makeGridViewFunction(pythonForce, gridView);
auto localForce = localFunction(forceGVF);
@@ -586,7 +238,7 @@ int main(int argc, char *argv[])
/**
* @brief Get effective prestrain Tensor
*/
- Dune::FieldVector<adouble,3> Beffvec = parameterSet.get<Dune::FieldVector<adouble,3>>("effectivePrestrain", {0.0, 0.0, 0.0});
+ Dune::FieldVector<adouble,3> Beffvec = parameterSet.get<Dune::FieldVector<adouble,3> >("effectivePrestrain", {0.0, 0.0, 0.0});
Dune::FieldMatrix<adouble,2,2> effectivePrestrain = {{(adouble)Beffvec[0], (adouble)Beffvec[2]}, {(adouble)Beffvec[2],(adouble)Beffvec[1]} };
printmatrix(std::cout, effectivePrestrain, "effective prestrain (Beff): ", "--");
@@ -594,69 +246,51 @@ int main(int argc, char *argv[])
/**
* @brief Get effective quadratic form
*/
- Dune::FieldVector<adouble,6> Qhomvec = parameterSet.get<Dune::FieldVector<adouble,6>>("effectiveQuadraticForm", {1.0, 1.0, 1.0, 0.0, 0.0, 0.0});
- Dune::FieldMatrix<adouble,3,3> Qhom = {{(adouble)Qhomvec[0], (adouble)Qhomvec[3], (adouble)Qhomvec[4]},
- {(adouble)Qhomvec[3], (adouble)Qhomvec[1], (adouble)Qhomvec[5]},
- {(adouble)Qhomvec[4], (adouble)Qhomvec[5], (adouble)Qhomvec[2]}};
+ Dune::FieldVector<adouble,6> Qhomvec = parameterSet.get<Dune::FieldVector<adouble,6> >("effectiveQuadraticForm", {1.0, 1.0, 1.0, 0.0, 0.0, 0.0});
+ Dune::FieldMatrix<adouble,3,3> Qhom = {{(adouble)Qhomvec[0], (adouble)Qhomvec[3], (adouble)Qhomvec[4]},
+ {(adouble)Qhomvec[3], (adouble)Qhomvec[1], (adouble)Qhomvec[5]},
+ {(adouble)Qhomvec[4], (adouble)Qhomvec[5], (adouble)Qhomvec[2]}};
printmatrix(std::cout, Qhom, "effective quadratic form (Qhom): ", "--");
- // Assembler using ADOL-C
- /**
- * @brief Setup nonconforming energy
- */
- auto localEnergy_nonconforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergy<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce);
- /**
- * @brief Setup conforming energy (WIP)
- */
- auto localEnergy_conforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyZienkiewicz<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce);
- // auto localEnergy_conforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyZienkiewiczProjected<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce);
- /**
- * @brief Setup energy featuring prestrain
- */
- // auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce, Qhom, effectivePrestrain);
- auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce, parameterSet, pyModule);
+ // The energy consists of two parts: 1. A bending energy contribution and 2. Contribution from a force term.
+ auto sumEnergy = std::make_shared<GFE::SumEnergy<CoefficientBasis, GFE::RealTuple<adouble,3>, GFE::Rotation<adouble,3> > >();
+
+ // Setup prestrained bending energy.
+ auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, ACoefficient> >(localDKFunction, parameterSet, pyModule);
+ // Setup force energy.
+ auto forceEnergy = std::make_shared<GFE::ForceEnergy<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient> >(localDKFunction, localForce);
+ sumEnergy->addLocalEnergy(localEnergy_prestrain);
+ sumEnergy->addLocalEnergy(forceEnergy);
+
+ // Setup the assembler.
+ auto localGFEADOLCStiffness_prestrain = std::make_shared<Dune::GFE::LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> >(sumEnergy);
+ std::shared_ptr<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> > assembler_prestrain;
+ assembler_prestrain = std::make_shared<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> >(coefficientBasis, localGFEADOLCStiffness_prestrain);
- LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_conforming(localEnergy_conforming.get());
- LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_nonconforming(localEnergy_nonconforming.get());
- LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_prestrain(localEnergy_prestrain.get());
- GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_conforming(coefficientBasis, localGFEADOLCStiffness_conforming);
- GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_nonconforming(coefficientBasis, localGFEADOLCStiffness_nonconforming);
- GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_prestrain(coefficientBasis, localGFEADOLCStiffness_prestrain);
// /////////////////////////////////////////////////
// Create a Riemannian trust-region solver
// /////////////////////////////////////////////////
- RiemannianProximalNewtonSolver<CoefficientBasis, Coefficient> solver;
-
-
-
- if (parameterSet.get<bool>("prestrainFlag", 0))
- solver.setup(*grid,
- &assembler_prestrain,
- isometryCoefficients,
- dirichletNodes,
- parameterSet);
- else if (parameterSet.get<bool>("conforming_DiscreteJacobian", 1))
- solver.setup(*grid,
- &assembler_conforming,
- isometryCoefficients,
- dirichletNodes,
- parameterSet);
- else
- solver.setup(*grid,
- &assembler_nonconforming,
- isometryCoefficients,
- dirichletNodes,
- parameterSet);
+ /**
+ * @brief Create a solver:
+ * - Adaptively Regularized Riemannian Newton (ARRN) [default]
+ */
+ Dune::GFE::RiemannianProximalNewtonSolver<CoefficientBasis, Coefficient> ARRNsolver;
+
+
+ ARRNsolver.setup(*grid,
+ &(*assembler_prestrain),
+ isometryCoefficients,
+ dirichletNodes,
+ parameterSet);
// /////////////////////////////////////////////////////
// Solve!
// /////////////////////////////////////////////////////
- // solver.setInitialIterate(isometryCoefficients);
- solver.solve();
- isometryCoefficients = solver.getSol();
+ ARRNsolver.solve();
+ isometryCoefficients = ARRNsolver.getSol();
// Convert coefficient data structure from 'IsometryCoefficients' to 'VectorSpaceCoefficients'
VectorSpaceCoefficients x_out(deformationBasis.size());
@@ -668,16 +302,16 @@ int main(int argc, char *argv[])
std::string baseNameDefault = "bending-isometries-";
std::string baseName = parameterSet.get("baseName", baseNameDefault);
std::string resultFileName = parameterSet.get("resultPath", "")
- + "/" + baseName
- + "_level" + std::to_string(parameterSet.get<int>("numLevels"));
+ + "/" + baseName
+ + "_level" + std::to_string(parameterSet.get<int>("numLevels"));
if (parameterSet.get<bool>("conforming_DiscreteJacobian", 1))
resultFileName = resultFileName + "_C";
- else
+ else
resultFileName = resultFileName + "_NC";
- // Create a deformation function but this time with double-types.
- using LocalDKFunctionD = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
+ // Create a deformation function but this time with double-types.
+ using LocalDKFunctionD = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
LocalDKFunctionD localDKFunctionDouble(deformationBasis, coefficientBasis, isometryCoefficients);
@@ -690,7 +324,7 @@ int main(int argc, char *argv[])
* interpolate the identity and substract from the coefficient vector.
*/
VectorSpaceCoefficients identity(deformationBasis.size());
- IdentityGridEmbedding<double> identityGridEmbedding;
+ Dune::GFE::Impl::IdentityGridEmbedding<double> identityGridEmbedding;
interpolate(deformationBasis, identity, identityGridEmbedding);
// auto identity_tmp = identity;
@@ -700,8 +334,8 @@ int main(int argc, char *argv[])
displacement -= identity;
// std::cout << "displacement.size():" << displacement.size() << std::endl;
- auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x_out);
- auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, displacement);
+ auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, x_out);
+ auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, displacement);
/**
* @brief We need to subsample, because VTK cannot natively display real third-order functions
@@ -712,31 +346,6 @@ int main(int argc, char *argv[])
- /**
- * @brief Basis used to represent normal vector fields
- *
- */
- auto normalBasis = makeBasis(gridView,
- power<3>(
- lagrange<1>(),
- flatLexicographic()));
- // auto normalBasis = makeBasis(gridView,
- // power<3>(
- // lagrange<1>(),
- // blockedInterleaved()));
-
-
- // TEST Compute
-
-
- // auto normalLambda = [deformationFunction](const FieldVector<double,2>& x)
- // {
- // // deformationfunction.derivative() ... //needs binding?!
-
-
- // }
-
-
/**
@@ -744,147 +353,108 @@ int main(int argc, char *argv[])
*/
if (parameterSet.get<bool>("vtkwrite_analyticalSolution", 0))
{
- // auto pythonAnalyticalSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("u"), pyModule.get("du"));
auto pythonAnalyticalSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("displacement"), pyModule.get("displacementGradient"));
-
-
- // deprecated: interpolate ...
- // VectorSpaceCoefficients y(deformationBasis.size());
- // interpolate(deformationBasis, y, pythonAnalyticalSolution);
- // // Compute the displacement
- // auto displacementAnalytical = y;
- // // displacementAnalytical -= identity_tmp;
- // displacementAnalytical -= identity;
-
-
- // auto pythonIdentity = Python::make_function<FieldVector<double,3>>(IdentityGridEmbedding<double>::operator())
-
-
- // auto displacementFunctionAnalytical = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, displacementAnalytical);
- // auto deformationFunctionAnalytical = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, y);
- // vtkWriter.addVertexData(displacementFunctionAnalytical, VTK::FieldInfo("displacement_analytical", VTK::FieldInfo::Type::vector, 3));
- // vtkWriter.addVertexData(deformationFunctionAnalytical, VTK::FieldInfo("deformation_analytical", VTK::FieldInfo::Type::vector, 3));
-
vtkWriter.addVertexData((pythonAnalyticalSolution), VTK::FieldInfo("displacement_analytical", VTK::FieldInfo::Type::vector, 3));
/**
- * @brief Get the normal vector field of the surface parametrized
+ * @brief Get the normal vector field of the surface parametrized
* by the analytical solution.
- * - We represent the normal vector in a first order Lagrange-Power basis ('normalBasis').
*/
if (parameterSet.get<bool>("vtkWrite_analyticalSurfaceNormal", 0))
{
- // Get the surface normal function.
- auto pythonSurfaceNormal = Python::make_function<FieldVector<double,3>>(pyModule.get("surfaceNormal"));
-
-
- // deprecated: interpolate ...
- // std::vector<FieldVector<double,3>> normalVectorCoefficients(normalBasis.size());
- // Dune::Functions::interpolate(normalBasis, normalVectorCoefficients, pythonSurfaceNormal);
- // auto surfaceNormalAnalytical = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(normalBasis, normalVectorCoefficients);
- // vtkWriter.addVertexData(surfaceNormalAnalytical, VTK::FieldInfo("surfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
-
- vtkWriter.addVertexData(pythonSurfaceNormal, VTK::FieldInfo("surfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
+ // Get the surface normal function.
+ auto pythonSurfaceNormal = Python::make_function<FieldVector<double,3> >(pyModule.get("surfaceNormal"));
+ vtkWriter.addVertexData(pythonSurfaceNormal, VTK::FieldInfo("surfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
}
}
- //------------------------------------------------------------------------------------- TODO: OUTSOURCE
- /**
- * @brief TEST: Compute the discrete normal vector of the surface parametrized
- * by the discrete solution.
- */
- auto surfaceNormalDiscreteCoefficients = computeDiscreteSurfaceNormal(localDKFunctionDouble, normalBasis);
//-------------------------------------------------------------------------------------
-
// Create DiscreteGlobalBasisFunctions.
- auto surfaceNormalDiscrete = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(normalBasis, surfaceNormalDiscreteCoefficients);
+ // auto surfaceNormalDiscrete = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(normalBasis, surfaceNormalDiscreteCoefficients);
vtkWriter.addVertexData(displacementFunction, VTK::FieldInfo("displacement", VTK::FieldInfo::Type::vector, 3));
- vtkWriter.addVertexData(surfaceNormalDiscrete , VTK::FieldInfo("surfaceNormal_discrete", VTK::FieldInfo::Type::vector, 3));
vtkWriter.write(resultFileName);
}
/**
- * @brief Compute the L2-Error and H1-SemiError between the discrete deformation u_h and the analytical deformation u
- *
+ * @brief Compute the L2-Error and H1-SemiError between the discrete deformation u_h and the analytical deformation u
+ *
*/
- // Read reference solution and its derivative into a Python function
- // auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("u"), pyModule.get("du"));
- // auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("displacement"), pyModule.get("displacementGradient"));
- auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("deformation"), pyModule.get("deformationGradient"));
- auto referenceDerivative = derivative(referenceSolution);
+ // Read reference solution and its derivative into a Python function
+ auto referenceSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("deformation"), pyModule.get("deformationGradient"));
+ auto referenceDerivative = derivative(referenceSolution);
- using LocalDKFunctionD = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
- LocalDKFunctionD localDKFunctionD(deformationBasis, coefficientBasis, isometryCoefficients);
+ using LocalDKFunctionD = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
+ LocalDKFunctionD localDKFunctionD(deformationBasis, coefficientBasis, isometryCoefficients);
- // QuadratureRule for the integral of the L^2 error
- QuadratureRuleKey quadKey(dim,6);
+ // QuadratureRule for the integral of the L^2 error
+ QuadratureRuleKey quadKey(dim,6);
- // The error to be computed
- double l2ErrorSquared = 0;
- double h1ErrorSquared = 0;
+ // The error to be computed
+ double l2ErrorSquared = 0;
+ double h1ErrorSquared = 0;
- for (auto&& element : elements(gridView))
- {
+ for (auto&& element : elements(gridView))
+ {
// localNumericalSolution.bind(element);
- localDKFunctionD.bind(element);
+ localDKFunctionD.bind(element);
- // Get quadrature formula
- quadKey.setGeometryType(element.type());
- const auto& quad = QuadratureRuleCache<double, dim>::rule(quadKey);
+ // Get quadrature formula
+ quadKey.setGeometryType(element.type());
+ const auto& quad = QuadratureRuleCache<double, dim>::rule(quadKey);
- for (auto quadPoint : quad)
- {
- auto quadPos = quadPoint.position();
- const auto integrationElement = element.geometry().integrationElement(quadPos);
- const auto weight = quadPoint.weight();
+ for (auto quadPoint : quad)
+ {
+ auto quadPos = quadPoint.position();
+ const auto integrationElement = element.geometry().integrationElement(quadPos);
+ const auto weight = quadPoint.weight();
- // auto numValue = localNumericalSolution(quadPos);
- auto refValue = referenceSolution(element.geometry().global(quadPos));
- auto numValue = localDKFunctionD.evaluate(quadPos).globalCoordinates();
+ // auto numValue = localNumericalSolution(quadPos);
+ auto refValue = referenceSolution(element.geometry().global(quadPos));
+ auto numValue = localDKFunctionD.evaluate(quadPos).globalCoordinates();
- auto numDir = localDKFunctionD.evaluateDerivative(quadPos);
- auto refDir = referenceDerivative(element.geometry().global(quadPos));
- auto diff = numDir - refDir;
+ auto numDir = localDKFunctionD.evaluateDerivative(quadPos);
+ auto refDir = referenceDerivative(element.geometry().global(quadPos));
+ auto diff = numDir - refDir;
- // integrate error
- l2ErrorSquared += (numValue - refValue)* (numValue - refValue) * weight * integrationElement;
- h1ErrorSquared += diff.frobenius_norm2() * weight * integrationElement;
- }
- }
- std::cout << "elements: " << gridView.size(0)
- << " "
- << "L^2 error: " << std::sqrt(l2ErrorSquared)
- << " ";
- std::cout << "h^1 error: " << std::sqrt(h1ErrorSquared) << std::endl;
-
-
- //Check Quantities
- if( std::sqrt(l2ErrorSquared) > 1e-12)
- {
- std::cerr << std::setprecision(9);
- std::cerr << "L2-error is to large! " << std::endl;
- return 1;
- }
- if( std::sqrt(h1ErrorSquared) > 1e-12)
- {
- std::cerr << std::setprecision(9);
- std::cerr << "H1-error is to large! " << std::endl;
- return 1;
- }
- // Compare energy values.
- auto numerical_energy = solver.getStatistics().finalEnergy;
- auto analytical_energy = 0.0;
- std::cout << "Energy difference: " << std::abs(analytical_energy - numerical_energy) << std::endl;
- if( std::abs(analytical_energy - numerical_energy) > 1e-12)
- {
- std::cerr << std::setprecision(9);
- std::cerr << "Energy difference: " << std::abs(analytical_energy - numerical_energy) << " is to large! " << std::endl;
- return 1;
+ // integrate error
+ l2ErrorSquared += (numValue - refValue)* (numValue - refValue) * weight * integrationElement;
+ h1ErrorSquared += diff.frobenius_norm2() * weight * integrationElement;
}
+ }
+ std::cout << "elements: " << gridView.size(0)
+ << " "
+ << "L^2 error: " << std::sqrt(l2ErrorSquared)
+ << " ";
+ std::cout << "h^1 error: " << std::sqrt(h1ErrorSquared) << std::endl;
+
+
+ //Check Quantities
+ if( std::sqrt(l2ErrorSquared) > 1e-12)
+ {
+ std::cerr << std::setprecision(9);
+ std::cerr << "L2-error is to large! " << std::endl;
+ return 1;
+ }
+ if( std::sqrt(h1ErrorSquared) > 1e-12)
+ {
+ std::cerr << std::setprecision(9);
+ std::cerr << "H1-error is to large! " << std::endl;
+ return 1;
+ }
+ // Compare energy values.
+ auto numerical_energy = ARRNsolver.getStatistics().finalEnergy;
+ auto analytical_energy = 0.0;
+ std::cout << "Energy difference: " << std::abs(analytical_energy - numerical_energy) << std::endl;
+ if( std::abs(analytical_energy - numerical_energy) > 1e-12)
+ {
+ std::cerr << std::setprecision(9);
+ std::cerr << "Energy difference: " << std::abs(analytical_energy - numerical_energy) << " is to large! " << std::endl;
+ return 1;
+ }
std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
std::cout << "Test: linearisometrytest passed." << std::endl;
return 0;
- }
\ No newline at end of file
+}
diff --git a/test/orthotropicrotation_1.py b/test/orthotropicrotation_1.py
index 40ec1a779524e1f01cf855720c45e6275cdb31b2..bf9503dcd6cde176a67954bd37fe23581b470171 100644
--- a/test/orthotropicrotation_1.py
+++ b/test/orthotropicrotation_1.py
@@ -103,3 +103,48 @@ class Microstructure:
def prestrain_phase3(self,x):
return [[0, 0, 0], [0,0,0], [0,0,0]]
+
+# parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+#############################################
+# Grid parameters
+#############################################
+parameterSet.microGridLevel = 3
+
+#############################################
+# Assembly options
+#############################################
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
+
+#############################################
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
+#############################################
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
+
+#############################################
+# Write/Output options #(default=false)
+#############################################
+# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
+parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
+#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
+parameterSet.MaterialSubsamplingRefinement= 2
+# --- Write Correctos to VTK-File:
+parameterSet.writeCorrectorsVTK = 0
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = True
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
+
+
diff --git a/test/orthotropicrotationtest.cc b/test/orthotropicrotationtest.cc
index 9c99eb440abdc759e632c902274095ddd49cee7f..dabd68c40c90d79b516f4bc8dda1bb55bb803dd1 100644
--- a/test/orthotropicrotationtest.cc
+++ b/test/orthotropicrotationtest.cc
@@ -63,9 +63,9 @@ using namespace MatrixOperations;
/**
* @brief Compute effective quantities for a trilayer setup with 3 orthotropic phases:
- * Once with a canonical orthonormal material frame and once with a material frame
+ * Once with a canonical orthonormal material frame and once with a material frame
* that is rotated pi(180 degree) around different axes.
- * Aim of the test is to check the correctness of the material frame transformation.
+ * Aim of the test is to check the correctness of the material frame transformation.
*/
@@ -87,7 +87,7 @@ int main(int argc, char *argv[])
MPIHelper::instance(argc, argv);
Dune::Timer globalTimer;
- //--- setup Log-File
+ //--- setup Log-File
std::fstream log;
std::cout << "Current path is " << std::filesystem::current_path() << '\n';
@@ -96,42 +96,22 @@ int main(int argc, char *argv[])
std::cout << "dir_path: " << file_path.parent_path() << std::endl;
std::string dir_path = file_path.parent_path();
- // ParameterTree parameterSet;
- // if (argc < 2)
- // ParameterTreeParser::readINITree(dir_path + "/orthotropicrotation_1.parset", parameterSet);
- // else
- // {
- // ParameterTreeParser::readINITree(argv[1], parameterSet);
- // ParameterTreeParser::readOptions(argc, argv, parameterSet);
- // }
-
- // //--- Start Python interpreter
- // Python::start();
- // Python::Reference main = Python::import("__main__");
- // Python::run("import math");
- // Python::runStream()
- // << std::endl << "import sys"
- // << std::endl << "sys.path.append('" << dir_path << "')"
- // << std::endl;
-
-
- // Start Python interpreter
- Python::start();
- auto pyMain = Python::main();
- pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
- auto pyModule = pyMain.import("orthotropicrotation_1");
-
- ParameterTree parameterSet;
- pyModule.get("parameterSet").toC(parameterSet);
- // read possible further parameters from the command line
- ParameterTreeParser::readOptions(argc, argv, parameterSet);
- // Print all parameters, to make them appear in the log file
- std::cout << "Input parameters:" << std::endl;
- parameterSet.report();
+ // Start Python interpreter
+ Python::start();
+ auto pyMain = Python::main();
+ pyMain.runStream()
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
+ auto pyModule = pyMain.import("orthotropicrotation_1");
+ ParameterTree parameterSet;
+ pyModule.get("parameterSet").toC(parameterSet);
+ // read possible further parameters from the command line
+ ParameterTreeParser::readOptions(argc, argv, parameterSet);
+ // Print all parameters, to make them appear in the log file
+ std::cout << "Input parameters:" << std::endl;
+ parameterSet.report();
constexpr int dim = 3;
@@ -143,10 +123,9 @@ int main(int argc, char *argv[])
FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
- int gridLevel = 3;
-
- std::array<int, dim> nElements = {(int)std::pow(2,gridLevel) ,(int)std::pow(2,gridLevel) ,(int)std::pow(2,gridLevel)};
- std::cout << "Number of Grid-Elements in each direction: " << nElements << std::endl;
+ int microGridLevel = parameterSet.get<int>("microGridLevel", 1);
+ std::array<int, dim> nElements = {(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel)};
+ std::cout << "Number of Grid-Elements in each direction: " << (int)std::pow(2,microGridLevel) << std::endl;
using CellGridType = YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
CellGridType grid_CE(lower,upper,nElements);
@@ -178,22 +157,12 @@ int main(int argc, char *argv[])
Python::Callable MicrostructureClass = pyModule.get("Microstructure");
Python::Reference microstructure = MicrostructureClass(); //Setup a constant microstructure
- ///////////////////////////////////
// Create prestrained material object
- ///////////////////////////////////
using MaterialType = prestrainedMaterial<GridView>;
std::shared_ptr<MaterialType> material = std::make_shared<MaterialType>(gridView_CE,microstructure,parameterSet,pyModule);
- // auto material_ = prestrainedMaterial(gridView_CE,microstructure,parameterSet,pyModule);
-
- // --- Get scale ratio
- // double gamma = parameterSet.get<double>("gamma",1.0);
- //------------------------------------------------------------------------------------------------
- //--- Compute Correctors
- // auto correctorComputer = CorrectorComputer(Basis_CE, material_, log, parameterSet);
- // correctorComputer.assemble();
- // correctorComputer.solve();
- std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType>>(Basis_CE, material, parameterSet);
+ // Compute Correctors
+ std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType> >(Basis_CE, material, parameterSet);
correctorComputer->assemble();
correctorComputer->solve();
@@ -204,16 +173,12 @@ int main(int argc, char *argv[])
//--- get effective quantities
auto Qeff = effectiveQuantitiesComputer.getQeff();
auto Beff = effectiveQuantitiesComputer.getBeff();
-// printmatrix(std::cout, Qeff, "Matrix Qeff", "--");
-// printvector(std::cout, Beff, "Beff", "--");
-
+ // printmatrix(std::cout, Qeff, "Matrix Qeff", "--");
+ // printvector(std::cout, Beff, "Beff", "--");
/**
* @brief Compute "rotated" effective quantitites
- *
*/
-// ParameterTreeParser::readINITree("../test/orthotropicrotation_2.parset", parameterSet);
-// ParameterTreeParser::readINITree(dir_path + "/orthotropicrotation_2.parset", parameterSet);
pyModule = pyMain.import("orthotropicrotation_2");
pyModule.get("parameterSet").toC(parameterSet);
@@ -221,10 +186,7 @@ int main(int argc, char *argv[])
Python::Callable MicrostructureClass_2 = pyModule.get("Microstructure");
Python::Reference microstructure_2 = MicrostructureClass_2(); //Setup a constant microstructure
-
-
-
- //-- Alternative:
+ //-- Alternative:
material->updateMicrostructure(microstructure_2);
correctorComputer->updateMaterial(material);
effectiveQuantitiesComputer.updateCorrectorComputer(correctorComputer);
@@ -237,34 +199,6 @@ int main(int argc, char *argv[])
// correctorComputer->updateMaterial(material_2);
// effectiveQuantitiesComputer.updateCorrectorComputer(correctorComputer);
-
-
- /**
- * @brief Old way:
- *
- */
- // auto material_2 = prestrainedMaterial(gridView_CE,microstructure_2,parameterSet,pyModule);
- // std::shared_ptr<MaterialType> material_2 = std::make_shared<MaterialType>(gridView_CE,microstructure_2,parameterSet,pyModule);
-
-
- //--- Compute Correctors
- // auto correctorComputer_2 = CorrectorComputer(Basis_CE, material_2, log, parameterSet);
- // correctorComputer_2.assemble();
- // correctorComputer_2.solve();
-
-
- // std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer_2 = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType>>(Basis_CE, material_2, parameterSet);
- // correctorComputer_2->assemble();
- // correctorComputer_2->solve();
-
- // //--- Compute effective quantities
- // auto effectiveQuantitiesComputer_2 = EffectiveQuantitiesComputer(correctorComputer_2);
- // effectiveQuantitiesComputer_2.computeEffectiveQuantities();
-
- // //--- get effective quantities
- // auto Qeff_2 = effectiveQuantitiesComputer_2.getQeff();
- // auto Beff_2 = effectiveQuantitiesComputer_2.getBeff();
-
/**
* @brief Compare results.
*
diff --git a/test/parametrizedlaminatetest.cc b/test/parametrizedlaminatetest.cc
index 4aa89738903ec5711bebd995bf147db0165283e4..3bbeb3c22d87105155d8ac4b5e3d2b96cf1469a7 100644
--- a/test/parametrizedlaminatetest.cc
+++ b/test/parametrizedlaminatetest.cc
@@ -60,7 +60,6 @@
using namespace Dune;
using namespace MatrixOperations;
-
/**
* @brief In the special case of a parametrized laminate (Lemma 4.5) in
* [Böhnlein,Neukamm,Padilla-Garza,Sander - A homogenized bending theory for prestrained plates]
@@ -68,7 +67,6 @@ using namespace MatrixOperations;
* This test compares the analytical quantities with numerical results.
*/
-
//////////////////////////////////////////////////
// Infrastructure for handling periodicity
//////////////////////////////////////////////////
@@ -87,7 +85,7 @@ int main(int argc, char *argv[])
MPIHelper::instance(argc, argv);
Dune::Timer globalTimer;
- //--- setup Log-File
+ //--- setup Log-File
std::fstream log;
std::cout << "Current path is " << std::filesystem::current_path() << '\n';
@@ -96,64 +94,22 @@ int main(int argc, char *argv[])
std::cout << "dir_path: " << file_path.parent_path() << std::endl;
std::string dir_path = file_path.parent_path();
- // ParameterTree parameterSet;
- // if (argc < 2)
- // ParameterTreeParser::readINITree(dir_path + "/parametrizedlaminate.parset", parameterSet);
- // else
- // {
- // ParameterTreeParser::readINITree(argv[1], parameterSet);
- // ParameterTreeParser::readOptions(argc, argv, parameterSet);
- // }
-
- // ParameterTree parameterSet;
- // if (argc < 2)
- // ParameterTreeParser::readINITree("parset/parametrizedlaminate.parset", parameterSet);
- // else
- // {
- // ParameterTreeParser::readINITree(argv[1], parameterSet);
- // ParameterTreeParser::readOptions(argc, argv, parameterSet);
- // }
-
- // ParameterTree parameterSet;
- // if (argc < 2)
- // ParameterTreeParser::readINITree("/parset/parametrizedlaminate.parset", parameterSet);
- // else
- // {
- // ParameterTreeParser::readINITree(argv[1], parameterSet);
- // ParameterTreeParser::readOptions(argc, argv, parameterSet);
- // }
-
- //--- Start Python interpreter
- // Python::start();
- // Python::Reference main = Python::import("__main__");
- // Python::run("import math");
- // Python::runStream()
- // << std::endl << "import sys"
- // << std::endl << "sys.path.append('" << dir_path << "')"
- // << std::endl;
-
-
-
- // Start Python interpreter
- Python::start();
- auto pyMain = Python::main();
- pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
- auto pyModule = pyMain.import("parametrized_laminate");
-
- ParameterTree parameterSet;
- pyModule.get("parameterSet").toC(parameterSet);
- // read possible further parameters from the command line
- ParameterTreeParser::readOptions(argc, argv, parameterSet);
- // Print all parameters, to make them appear in the log file
- std::cout << "Input parameters:" << std::endl;
- parameterSet.report();
-
-
-
+ // Start Python interpreter
+ Python::start();
+ auto pyMain = Python::main();
+ pyMain.runStream()
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
+ auto pyModule = pyMain.import("parametrizedlaminatetest");
+ ParameterTree parameterSet;
+ pyModule.get("parameterSet").toC(parameterSet);
+ // read possible further parameters from the command line
+ ParameterTreeParser::readOptions(argc, argv, parameterSet);
+ // Print all parameters, to make them appear in the log file
+ std::cout << "Input parameters:" << std::endl;
+ parameterSet.report();
@@ -166,10 +122,9 @@ int main(int argc, char *argv[])
FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
- int gridLevel = 3;
-
- std::array<int, dim> nElements = {(int)std::pow(2,gridLevel) ,(int)std::pow(2,gridLevel) ,(int)std::pow(2,gridLevel)};
- std::cout << "Number of Grid-Elements in each direction: " << nElements << std::endl;
+ int microGridLevel = parameterSet.get<int>("microGridLevel", 1);
+ std::array<int, dim> nElements = {(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel)};
+ std::cout << "Number of Grid-Elements in each direction: " << (int)std::pow(2,microGridLevel) << std::endl;
using CellGridType = YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
CellGridType grid_CE(lower,upper,nElements);
@@ -197,30 +152,17 @@ int main(int argc, char *argv[])
));
-
-
-
// Create Microstructure object.
Python::Callable MicrostructureClass = pyModule.get("Microstructure");
Python::Reference microstructure = MicrostructureClass(); //Setup a constant microstructure
- ///////////////////////////////////
// Create prestrained material object
- ///////////////////////////////////
- // auto material = prestrainedMaterial(gridView_CE,microstructure,parameterSet,pyModule);
-
using MaterialType = prestrainedMaterial<GridView>;
std::shared_ptr<MaterialType> material = std::make_shared<MaterialType>(gridView_CE,microstructure,parameterSet,pyModule);
-
-
- //------------------------------------------------------------------------------------------------
- //--- Compute Correctors
- // auto correctorComputer = CorrectorComputer(Basis_CE, material, log, parameterSet);
- // correctorComputer.assemble();
- // correctorComputer.solve();
- std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType>>(Basis_CE, material, parameterSet);
+ //--- Compute correctors
+ std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType> >(Basis_CE, material, parameterSet);
correctorComputer->assemble();
correctorComputer->solve();
diff --git a/test/parametrized_laminate.py b/test/parametrizedlaminatetest.py
similarity index 67%
rename from test/parametrized_laminate.py
rename to test/parametrizedlaminatetest.py
index 0260b8c391e8f44d08b5c9c067ed2916a395e551..008c5fc4f24c1fbe3272c54af9e3c75805c60db5 100644
--- a/test/parametrized_laminate.py
+++ b/test/parametrizedlaminatetest.py
@@ -24,7 +24,7 @@ parameterSet = ParameterSet()
# Paths
#############################################
# parameterSet.resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs_parametrized_laminate'
-parameterSet.baseName= 'parametrized_laminate' #(needed for Output-Filename)
+parameterSet.baseName= 'parametrizedlaminatetest' #(needed for Output-Filename)
#############################################
# Material Setup
@@ -91,56 +91,45 @@ class Microstructure:
return [[0, 0, 0], [0,0,0], [0,0,0]]
+parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
#############################################
# Grid parameters
#############################################
-## numLevels : Number of Levels on which solution is computed. starting with a 2x2x2 cube mesh.
-## {start,finish} computes on all grid from 2^(start) to 2^finish refinement
-#----------------------------------------------------
-parameterSet.numLevels= '3 3' # computes all levels from first to second entry
+parameterSet.microGridLevel = 3
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER (default), #4: UMFPACK - SOLVER
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 3 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
-
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
-parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
+parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
+parameterSet.MaterialSubsamplingRefinement= 2
# --- Write Correctos to VTK-File:
-parameterSet.write_VTK = 0
-
-# --- (Optional output) L2Error, integral mean:
-#parameterSet.write_L2Error = 1
-#parameterSet.write_IntegralMean = 1
-
-# --- check orthogonality (75) from paper:
-parameterSet.write_checkOrthogonality = 1
-
-# --- Write corrector-coefficients to log-File:
-#parameterSet.write_corrector_phi1 = 1
-#parameterSet.write_corrector_phi2 = 1
-#parameterSet.write_corrector_phi3 = 1
-
-# --- Print Condition number of matrix (can be expensive):
-#parameterSet.print_conditionNumber= 1 #(default=false)
-
+parameterSet.writeCorrectorsVTK = 0
# --- write effective quantities (Qhom.Beff) to .txt-files
-parameterSet.write_EffectiveQuantitiesToTxt = False
+parameterSet.write_EffectiveQuantitiesToTxt = True
+
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/test/properties-shape-test.cc b/test/properties-shape-test.cc
index d7ea1b89c4278d0ffe27b05d40f00685574b976f..2cff3e6713cf8403980d214b260df33eaf9a0aed 100644
--- a/test/properties-shape-test.cc
+++ b/test/properties-shape-test.cc
@@ -1,10 +1,8 @@
#include <config.h>
#include <signal.h>
#include <memory>
-
#include <fenv.h>
#include <array>
-
#include <math.h>
// Includes for the ADOL-C automatic differentiation library
@@ -13,22 +11,21 @@
#include <dune/fufem/utilities/adolcnamespaceinjections.hh>
#include <dune/common/typetraits.hh>
-
#include <dune/common/bitsetvector.hh>
#include <dune/common/parametertree.hh>
#include <dune/common/parametertreeparser.hh>
#include <dune/grid/uggrid.hh>
#include <dune/grid/utility/structuredgridfactory.hh>
-
#include <dune/grid/io/file/gmshreader.hh>
#include <dune/grid/io/file/vtk.hh>
#include <dune/functions/gridfunctions/discreteglobalbasisfunction.hh>
+#include <dune/functions/gridfunctions/composedgridfunction.hh>
+#include <dune/functions/functionspacebases/cubichermitebasis.hh>
#include <dune/functions/functionspacebases/lagrangebasis.hh>
#include <dune/functions/functionspacebases/powerbasis.hh>
#include <dune/functions/functionspacebases/interpolate.hh>
-#include <dune/functions/functionspacebases/reducedcubichermitetrianglebasis.hh>
#include <dune/fufem/boundarypatch.hh>
#include <dune/fufem/functiontools/boundarydofs.hh>
@@ -41,40 +38,35 @@
#include <dune/gfe/spaces/productmanifold.hh>
#include <dune/gfe/spaces/realtuple.hh>
#include <dune/gfe/spaces/rotation.hh>
-#include <dune/gfe/localdiscretekirchhoffbendingisometry.hh>
+#include <dune/gfe/functions/discretekirchhoffbendingisometry.hh>
+#include <dune/gfe/functions/embeddedglobalgfefunction.hh>
+#include <dune/gfe/functions/localprojectedfefunction.hh>
#include <dune/gfe/assemblers/localgeodesicfeadolcstiffness.hh>
-#include <dune/gfe/assemblers/harmonicenergy.hh>
#include <dune/gfe/assemblers/geodesicfeassembler.hh>
+#include <dune/gfe/assemblers/discretekirchhoffbendingenergy.hh>
+#include <dune/gfe/assemblers/forceenergy.hh>
+#include <dune/gfe/assemblers/sumenergy.hh>
#include <dune/gfe/bendingisometryhelper.hh>
#include <dune/gfe/riemannianpnsolver.hh>
-#include <dune/gfe/embeddedglobalgfefunction.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergy.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyconforming.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewicz.hh>
-#include <dune/gfe/energies/discretekirchhoffbendingenergyzienkiewiczprojected.hh>
-// #include <dune/gfe/energies/discretekirchhoffbendingenergyprestrained.hh>
+#include <dune/gfe/riemanniantrsolver.hh>
+#include <dune/microstructure/bendingisometryaddons.hh>
#include <dune/microstructure/energies/discretekirchhoffbendingenergyprestrained.hh>
-#include <dune/gfe/spaces/stiefelmanifold.hh>
-// #include <dune/gfe/spaces/stiefelmatrix.hh>
-
#include <dune/gmsh4/gmsh4reader.hh>
#include <dune/gmsh4/gridcreators/lagrangegridcreator.hh>
-
#include <filesystem>
const int dim = 2;
using namespace Dune;
-
int main(int argc, char *argv[])
{
/**
- * @brief We use this to catch a 'Floating point exception' caused by the 'innerSolver'
+ * @brief We use this to catch a 'Floating point exception' caused by the 'innerSolver'
* in RiemannianProximalNewton
*/
// std::shared_ptr<void(int)> handler(
@@ -82,7 +74,6 @@ int main(int argc, char *argv[])
// [](__sighandler_t f) { signal(SIGFPE, f); });
-
// feenableexcept(FE_INVALID);
std::vector<double> Energy_threshold = {1.0, 0.5, 2.0 };
@@ -94,617 +85,424 @@ int main(int argc, char *argv[])
for(size_t experimentNumber = 1; experimentNumber<4; experimentNumber++)
{
- MPIHelper::instance(argc, argv);
- Dune::Timer globalTimer;
-
- // if (argc < 3)
- // DUNE_THROW(Exception, "Usage: ./bending-isometries <python path> <python module without extension>");
-
- // Start Python interpreter
- // Python::start();
- // auto pyMain = Python::main();
- // pyMain.runStream()
- // << std::endl << "import math"
- // << std::endl << "import sys"
- // << std::endl << "sys.path.append('" << argv[1] << "')" << std::endl;
- // auto pyModule = pyMain.import(argv[2]);
-
+ MPIHelper::instance(argc, argv);
+ Dune::Timer globalTimer;
- std::cout << "Current path is " << std::filesystem::current_path() << '\n';
- std::filesystem::path file_path = (__FILE__);
- std::cout<< "File path: " << file_path<<std::endl;
- std::cout << "dir_path: " << file_path.parent_path() << std::endl;
- std::string dir_path = file_path.parent_path();
+ std::cout << "Current path is " << std::filesystem::current_path() << '\n';
+ std::filesystem::path file_path = (__FILE__);
+ std::cout<< "File path: " << file_path<<std::endl;
+ std::cout << "dir_path: " << file_path.parent_path() << std::endl;
+ std::string dir_path = file_path.parent_path();
- std::string experiment = "properties-shape-test-" + std::to_string(experimentNumber);
+ std::string experiment = "properties-shape-test-" + std::to_string(experimentNumber);
- // Start Python interpreter
- Python::start();
- auto pyMain = Python::main();
- pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
- // auto pyModule = pyMain.import("properties-shape-test-2");
- auto pyModule = pyMain.import(experiment);
+ // Start Python interpreter
+ Python::start();
+ auto pyMain = Python::main();
+ pyMain.runStream()
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
+ // auto pyModule = pyMain.import("properties-shape-test-2");
+ auto pyModule = pyMain.import(experiment);
- // parse data file
- ParameterTree parameterSet;
- pyModule.get("parameterSet").toC(parameterSet);
+ // parse data file
+ ParameterTree parameterSet;
+ pyModule.get("parameterSet").toC(parameterSet);
- // read possible further parameters from the command line
- ParameterTreeParser::readOptions(argc, argv, parameterSet);
+ // read possible further parameters from the command line
+ ParameterTreeParser::readOptions(argc, argv, parameterSet);
- // Print all parameters, to make them appear in the log file
- std::cout << "Executable: bending-isometries, with parameters:" << std::endl;
- parameterSet.report();
+ // Print all parameters, to make them appear in the log file
+ std::cout << "Executable: bending-isometries, with parameters:" << std::endl;
+ parameterSet.report();
- /////////////////////////////////////////
- // Create the grid
- /////////////////////////////////////////
- using GridType = UGGrid<dim>;
+ /////////////////////////////////////////
+ // Create the grid
+ /////////////////////////////////////////
+ using GridType = UGGrid<dim>;
- std::shared_ptr<GridType> grid;
- FieldVector<double,dim> lower(0), upper(1);
- std::array<unsigned int,dim> elementsArray;
+ std::shared_ptr<GridType> grid;
+ FieldVector<double,dim> lower(0), upper(1);
+ std::array<unsigned int,dim> elementsArray;
- std::string structuredGridType = parameterSet["structuredGrid"];
- if (structuredGridType != "false" )
- {
- lower = parameterSet.get<FieldVector<double,dim> >("lower");
- upper = parameterSet.get<FieldVector<double,dim> >("upper");
- elementsArray = parameterSet.get<std::array<unsigned int,dim> >("elements");
-
- if (structuredGridType == "simplex")
- grid = StructuredGridFactory<GridType>::createSimplexGrid(lower, upper, elementsArray);
- else if (structuredGridType == "cube")
- grid = StructuredGridFactory<GridType>::createCubeGrid(lower, upper, elementsArray);
- else
- DUNE_THROW(Exception, "Unknown structured grid type '" << structuredGridType << "' found!");
- } else {
- std::cout << "Read GMSH grid." << std::endl;
- std::string gridPath = parameterSet.get<std::string>("gridPath");
- std::string gridFile = parameterSet.get<std::string>("gridFile");
- GridFactory<GridType> factory;
- Gmsh4::LagrangeGridCreator creator{factory};
- Gmsh4Reader reader{creator};
- reader.read(gridPath + "/" + gridFile);
- grid = factory.createGrid();
- }
+ std::string structuredGridType = parameterSet["structuredGrid"];
+ if (structuredGridType != "false" )
+ {
+ lower = parameterSet.get<FieldVector<double,dim> >("lower");
+ upper = parameterSet.get<FieldVector<double,dim> >("upper");
+ elementsArray = parameterSet.get<std::array<unsigned int,dim> >("elements");
+
+ if (structuredGridType == "simplex")
+ grid = StructuredGridFactory<GridType>::createSimplexGrid(lower, upper, elementsArray);
+ else if (structuredGridType == "cube")
+ grid = StructuredGridFactory<GridType>::createCubeGrid(lower, upper, elementsArray);
+ else
+ DUNE_THROW(Exception, "Unknown structured grid type '" << structuredGridType << "' found!");
+ } else {
+ std::cout << "Read GMSH grid." << std::endl;
+ std::string gridPath = parameterSet.get<std::string>("gridPath");
+ std::string gridFile = parameterSet.get<std::string>("gridFile");
+ GridFactory<GridType> factory;
+ Gmsh4::LagrangeGridCreator creator{factory};
+ Gmsh4Reader reader{creator};
+ reader.read(gridPath + "/" + gridFile);
+ grid = factory.createGrid();
+ }
- const int macroGridLevel = parameterSet.get<int>("macroGridLevel");
- grid->globalRefine(macroGridLevel-1);
+ const int macroGridLevel = parameterSet.get<int>("macroGridLevel");
+ grid->globalRefine(macroGridLevel-1);
- using GridView = typename GridType::LeafGridView;
- GridView gridView = grid->leafGridView();
+ using GridView = typename GridType::LeafGridView;
+ GridView gridView = grid->leafGridView();
- ///////////////////////////////////////////////////////
- // Set up the function spaces
- ///////////////////////////////////////////////////////
+ ///////////////////////////////////////////////////////
+ // Set up the function spaces
+ ///////////////////////////////////////////////////////
- // General coefficient vector of a Discrete Kirchhoff deformation function
- using VectorSpaceCoefficients = BlockVector<FieldVector<double,3>>;
+ // General coefficient vector of a Discrete Kirchhoff deformation function
+ using VectorSpaceCoefficients = BlockVector<FieldVector<double,3> >;
- /**
- * @brief Coefficient vector of a Discrete Kirchhoff deformation function that is constrained to be an isometry.
- * we need both 'double' and 'adouble' versions.
- */
- using Coefficient = GFE::ProductManifold<RealTuple<double,3>, Rotation<double,3> >;
- using IsometryCoefficients = std::vector<Coefficient>;
- using ACoefficient = typename Coefficient::template rebind<adouble>::other;
- using AIsometryCoefficients = std::vector<ACoefficient>;
+ /**
+ * @brief Coefficient vector of a Discrete Kirchhoff deformation function that is constrained to be an isometry.
+ * we need both 'double' and 'adouble' versions.
+ */
+ using Coefficient = GFE::ProductManifold<GFE::RealTuple<double,3>, GFE::Rotation<double,3> >;
+ using IsometryCoefficients = std::vector<Coefficient>;
+ using ACoefficient = typename Coefficient::template rebind<adouble>::other;
+ using AIsometryCoefficients = std::vector<ACoefficient>;
- using namespace Functions::BasisFactory;
- auto deformationBasis = makeBasis(gridView,
- power<3>(reducedCubicHermiteTriangle(),
- blockedInterleaved()));
+ using namespace Functions::BasisFactory;
+ auto deformationBasis = makeBasis(gridView,
+ power<3>(reducedCubicHermite(),
+ blockedInterleaved()));
- using DeformationBasis = decltype(deformationBasis);
+ using DeformationBasis = decltype(deformationBasis);
- /**
- * @brief The next basis is used to assign (nonlinear) degrees of freedom to the grid vertices.
- * The actual basis function values are never used.
- */
- using CoefficientBasis = Functions::LagrangeBasis<GridView, 1>;
- CoefficientBasis coefficientBasis(gridView);
+ /**
+ * @brief The next basis is used to assign (nonlinear) degrees of freedom to the grid vertices.
+ * The actual basis function values are never used.
+ */
+ using CoefficientBasis = Functions::LagrangeBasis<GridView, 1>;
+ CoefficientBasis coefficientBasis(gridView);
- // A basis for the tangent space (used to set DirichletNodes)
- auto tangentBasis = makeBasis(gridView,
- power<Coefficient::TangentVector::dimension>(
+ // A basis for the tangent space (used to set DirichletNodes)
+ auto tangentBasis = makeBasis(gridView,
+ power<Coefficient::TangentVector::dimension>(
lagrange<1>(),
blockedInterleaved()));
- // Print some information on the grid and degrees of freedom.
- std::cout << "Number of Elements in the grid: " << gridView.size(0)<< std::endl;
- std::cout << "Number of Nodes in the grid: " << gridView.size(dim)<< std::endl;
- std::cout << "deformationBasis.size(): " << deformationBasis.size() << std::endl;
- std::cout << "deformationBasis.dimension(): " << deformationBasis.dimension() << std::endl;
- std::cout << "Degrees of Freedom: " << deformationBasis.dimension() << std::endl;
+ // Print some information on the grid and degrees of freedom.
+ std::cout << "Number of Elements in the grid: " << gridView.size(0)<< std::endl;
+ std::cout << "Number of Nodes in the grid: " << gridView.size(dim)<< std::endl;
+ std::cout << "deformationBasis.size(): " << deformationBasis.size() << std::endl;
+ std::cout << "deformationBasis.dimension(): " << deformationBasis.dimension() << std::endl;
+ std::cout << "Degrees of Freedom: " << deformationBasis.dimension() << std::endl;
- ///////////////////////////////////////////
- // Read Dirichlet values (NEW VERSION)
- ///////////////////////////////////////////
- BitSetVector<1> dirichletVertices(gridView.size(dim), false);
- const typename GridView::IndexSet &indexSet = gridView.indexSet();
+ ///////////////////////////////////////////
+ // Read Dirichlet values (NEW VERSION)
+ ///////////////////////////////////////////
+ const typename GridView::IndexSet &indexSet = gridView.indexSet();
+ BitSetVector<Coefficient::TangentVector::dimension> dirichletNodes(tangentBasis.size(), false); //tangentBasis.size()=coefficientBasis.size()
+ // Make Python function that computes which vertices are on the Dirichlet boundary, based on the vertex positions.
+ auto dirichletIndicatorFunction = Python::make_function<bool>(pyModule.get("dirichlet_indicator"));
- BitSetVector<Coefficient::TangentVector::dimension> dirichletNodes(tangentBasis.size(), false); //tangentBasis.size()=coefficientBasis.size()
+ /**
+ * @brief If we want to clamp DOFs inside the domain, we connot use 'BoundaryPatch'
+ * and 'constructBoundaryDofs'. This is a workaround for now.
+ */
+ for (auto &&vertex : vertices(gridView))
+ {
+ if(dirichletIndicatorFunction(vertex.geometry().corner(0)))
+ {
+ dirichletNodes[indexSet.index(vertex)] = true;
+ }
+ }
- /**
- * @brief Make Python function that computes which vertices are on the Dirichlet boundary,
- * based on the vertex positions.
- */
- auto dirichletIndicatorFunction = Python::make_function<bool>(pyModule.get("dirichlet_indicator"));
+ ///////////////////////////////////////////
+ // Get initial Iterate
+ ///////////////////////////////////////////
+ auto pythonInitialIterate = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("f"), pyModule.get("df"));
+ VectorSpaceCoefficients x(deformationBasis.size());
+ interpolate(deformationBasis, x, pythonInitialIterate);
+ /**
+ * @brief We need to setup LocalDiscreteKirchhoffBendingIsometry with a coefficient
+ * vector of ctype 'adouble' while the solver gets a coefficient vector
+ * of ctype 'double'.
+ */
+ IsometryCoefficients isometryCoefficients(coefficientBasis.size());
+ AIsometryCoefficients isometryCoefficients_adouble(coefficientBasis.size());
- /**
- * @brief If we want to clamp DOFs inside the domain, we connot use 'BoundaryPatch'
- * and 'constructBoundaryDofs'. This is a workaround for now.
- *
- *
- */
- for (auto &&vertex : vertices(gridView))
- {
- dirichletVertices[indexSet.index(vertex)] = dirichletIndicatorFunction(vertex.geometry().corner(0));
- if(dirichletIndicatorFunction(vertex.geometry().corner(0)))
- {
- dirichletNodes[indexSet.index(vertex)] = true;
- }
-
- }
-
- // std::cout << "tangentBasis.size():" << tangentBasis.size() << std::endl;
- // std::cout << "coefficientBasis.size():" << coefficientBasis.size() << std::endl;
+ /**
+ * @brief Copy the current iterate into a data type that encapsulates the isometry constraint
+ * i. e. convert coefficient data structure from 'VectorSpaceCoefficients' to 'IsometryCoefficients'
+ */
+ using namespace Dune::GFE::Impl;
+ vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients);
+ vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients_adouble);
+
+ /**
+ * @brief TEST: conversion of coefficient vectors (back & forth)
+ */
+ coefficientConversionTest<VectorSpaceCoefficients, DeformationBasis, CoefficientBasis, IsometryCoefficients>(x, deformationBasis, coefficientBasis);
- // // deprecated:
- // // BoundaryPatch<GridView> dirichletBoundary(gridView, dirichletVertices);
- // // constructBoundaryDofs(dirichletBoundary, tangentBasis, dirichletNodes);
- // // TEST: print dirichletNodes
- // std::cout << "print dirichletVertices:" << std::endl;
- // std::cout << dirichletVertices << std::endl;
+ using LocalDKFunction = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, AIsometryCoefficients>;
+ LocalDKFunction localDKFunction(deformationBasis, coefficientBasis, isometryCoefficients_adouble);
- // std::cout << "print dirichletNodes:" << std::endl;
- // std::cout << dirichletNodes << std::endl;
+ /**
+ * @brief TEST: check isometry condition on the nodes of the grid for initial deformation.
+ */
+ // auto initialDeformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x);
+ // nodewiseIsometryTest(initialDeformationFunction);
+ nodewiseIsometryTest(localDKFunction, gridView);
+ /**
+ * @brief Read force term.
+ */
+ auto pythonForce = Python::make_function<FieldVector<double,3> >(pyModule.get("force"));
+ auto forceGVF = Dune::Functions::makeGridViewFunction(pythonForce, gridView);
+ auto localForce = localFunction(forceGVF);
- // ///////////////////////////////////////////
- // // Read Dirichlet values (OLD VERSION)
- // ///////////////////////////////////////////
- // BitSetVector<1> dirichletVertices(gridView.size(dim), false);
- // const typename GridView::IndexSet &indexSet = gridView.indexSet();
- // /**
- // * @brief Make Python function that computes which vertices are on the Dirichlet boundary,
- // * based on the vertex positions.
- // */
- // auto dirichletIndicatorFunction = Python::make_function<bool>(pyModule.get("dirichlet_indicator"));
+ /**
+ * @brief Read effective prestrain Tensor
+ */
+ // Dune::FieldVector<adouble,3> Beffvec = parameterSet.get<Dune::FieldVector<adouble,3>>("effectivePrestrain", {0.0, 0.0, 0.0});
+ // Dune::FieldMatrix<adouble,2,2> effectivePrestrain = {{(adouble)Beffvec[0], (adouble)Beffvec[2]}, {(adouble)Beffvec[2],(adouble)Beffvec[1]} };
+ // printmatrix(std::cout, effectivePrestrain, "effective prestrain (Beff): ", "--");
- // for (auto &&vertex : vertices(gridView))
- // {
- // dirichletVertices[indexSet.index(vertex)] = dirichletIndicatorFunction(vertex.geometry().corner(0));
- // // if(dirichletIndicatorFunction(vertex.geometry().corner(0)))
- // // {
- // // std::cout << "Dirichlet Vertex with coordinates:" << vertex.geometry().corner(0) << std::endl;
- // // }
- // }
- // BoundaryPatch<GridView> dirichletBoundary(gridView, dirichletVertices);
- // BitSetVector<Coefficient::TangentVector::dimension> dirichletNodes(tangentBasis.size(), false);
- // constructBoundaryDofs(dirichletBoundary, tangentBasis, dirichletNodes);
+ /**
+ * @brief Get effective quadratic form Qhom
+ *
+ * input-vector: [q_1,q_2,q_3,q_12,q_13,q_23]
+ * is assembled into a matrix where the off-diagonal entries are divided by 2 (compare with definition in the paper)
+ * ( q_1 , 0.5*q_12 , 0.5*q_13 )
+ * Q = ( 0.5*q_12 , q_2 , 0.5*q_23 )
+ * ( 0.5*q_13 , 0.5*q_23 , q_3 )
+ */
+ // Dune::FieldVector<adouble,6> Qhomvec = parameterSet.get<Dune::FieldVector<adouble,6>>("effectiveQuadraticForm", {1.0, 1.0, 1.0, 0.0, 0.0, 0.0});
+ // Dune::FieldMatrix<adouble,3,3> Qhom = {{(adouble)Qhomvec[0], (adouble)0.5*Qhomvec[3], (adouble)0.5*Qhomvec[4]},
+ // {(adouble)0.5*Qhomvec[3], (adouble)Qhomvec[1], (adouble)0.5*Qhomvec[5]},
+ // {(adouble)0.5*Qhomvec[4], (adouble)0.5*Qhomvec[5], (adouble)Qhomvec[2]}};
+ // printmatrix(std::cout, Qhom, "effective quadratic form (Qhom): ", "--");
- ///////////////////////////////////////////
- // Get initial Iterate
- ///////////////////////////////////////////
- auto pythonInitialIterate = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("f"), pyModule.get("df"));
+ ////////////////////////////////////////////////////////////////////////
+ // Create an assembler for the Discrete Kirchhoff Energy Functional (using ADOL-C)
+ ////////////////////////////////////////////////////////////////////////
+ // The energy consists of two parts: 1. A bending energy contribution and 2. Contribution from a force term.
+ auto sumEnergy = std::make_shared<GFE::SumEnergy<CoefficientBasis, GFE::RealTuple<adouble,3>, GFE::Rotation<adouble,3> > >();
- VectorSpaceCoefficients x(deformationBasis.size());
- interpolate(deformationBasis, x, pythonInitialIterate);
+ // Setup prestrained bending energy.
+ auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, ACoefficient> >(localDKFunction, parameterSet, pyModule);
+ // Setup force energy.
+ auto forceEnergy = std::make_shared<GFE::ForceEnergy<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient> >(localDKFunction, localForce);
+ sumEnergy->addLocalEnergy(localEnergy_prestrain);
+ sumEnergy->addLocalEnergy(forceEnergy);
+ // Setup the assembler.
+ auto localGFEADOLCStiffness_prestrain = std::make_shared<Dune::GFE::LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> >(sumEnergy);
+ std::shared_ptr<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> > assembler_prestrain;
+ assembler_prestrain = std::make_shared<Dune::GFE::GeodesicFEAssembler<CoefficientBasis, Coefficient> >(coefficientBasis, localGFEADOLCStiffness_prestrain);
+ /**
+ * @brief Create a solver:
+ * - Riemannian Newton with Hessian modification
+ * - Riemannian Trust-region
+ */
+ Dune::GFE::RiemannianProximalNewtonSolver<CoefficientBasis, Coefficient> ARRNsolver;
+ Dune::GFE::RiemannianTrustRegionSolver<CoefficientBasis, Coefficient> RTRsolver;
- /**
- * @brief We need to setup LocalDiscreteKirchhoffBendingIsometry with a coefficient
- * vector of ctype 'adouble' while the solver gets a coefficient vector
- * of ctype 'double'.
- */
- IsometryCoefficients isometryCoefficients(coefficientBasis.size());
- AIsometryCoefficients isometryCoefficients_adouble(coefficientBasis.size());
+ std::string Solver_name = parameterSet.get<std::string>("Solver", "ARRN");
+ double numerical_energy; //final discrete energy
+ if(Solver_name == "ARRN")
+ {
- /**
- * @brief Copy the current iterate into a data type that encapsulates the isometry constraint
- * i. e. convert coefficient data structure from 'VectorSpaceCoefficients' to 'IsometryCoefficients'
- */
- vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients);
- vectorToIsometryCoefficientMap(deformationBasis,coefficientBasis,x,isometryCoefficients_adouble);
+ ARRNsolver.setup(*grid,
+ &(*assembler_prestrain),
+ isometryCoefficients,
+ dirichletNodes,
+ parameterSet);
- /**
- * @brief TEST: conversion of coefficient vectors (back & forth)
- */
- coefficientConversionTest<VectorSpaceCoefficients, DeformationBasis, CoefficientBasis, IsometryCoefficients>(x, deformationBasis, coefficientBasis);
+ ARRNsolver.solve();
+ isometryCoefficients = ARRNsolver.getSol();
+ numerical_energy = ARRNsolver.getStatistics().finalEnergy;
+ } else if (Solver_name =="RiemannianTR")
+ {
+ std::cout << "Using Riemannian Trust-region method for energy minimization." << std::endl;
+ RTRsolver.setup(*grid,
+ &(*assembler_prestrain),
+ isometryCoefficients,
+ dirichletNodes,
+ parameterSet);
+ RTRsolver.solve();
+ isometryCoefficients = RTRsolver.getSol();
+ numerical_energy = RTRsolver.getStatistics().finalEnergy;
+ } else
+ DUNE_THROW(Dune::Exception, "Unknown Solver type for bending isometries.");
-
- using LocalDKFunction = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, AIsometryCoefficients>;
- LocalDKFunction localDKFunction(deformationBasis, coefficientBasis, isometryCoefficients_adouble);
+ // Convert coefficient data structure from 'IsometryCoefficients' to 'VectorSpaceCoefficients'
+ VectorSpaceCoefficients x_out(deformationBasis.size());
+ isometryToVectorCoefficientMap(deformationBasis,coefficientBasis,x_out,isometryCoefficients);
+ ////////////////////////////////
+ // Output result
+ ////////////////////////////////
+ std::string baseNameDefault = "bending-isometries-";
+ std::string baseName = parameterSet.get("baseName", baseNameDefault);
+ std::string resultFileName = parameterSet.get("resultPath", "")
+ + "/" + baseName
+ + "_level" + std::to_string(parameterSet.get<int>("macroGridLevel"));
- /**
- * @brief TEST: check isometry condition on the nodes of the grid for initial deformation.
- */
- // auto initialDeformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x);
- // nodewiseIsometryTest(initialDeformationFunction);
- nodewiseIsometryTest(localDKFunction, gridView);
+ if (parameterSet.get<bool>("conforming_DiscreteJacobian", 1))
+ resultFileName = resultFileName + "_C";
+ else
+ resultFileName = resultFileName + "_NC";
- /**
- * @brief Read force term.
- */
- auto pythonForce = Python::make_function<FieldVector<double,3>>(pyModule.get("force"));
- auto forceGVF = Dune::Functions::makeGridViewFunction(pythonForce, gridView);
- auto localForce = localFunction(forceGVF);
+ // Create a deformation function but this time with double-types.
+ using LocalDKFunctionD = Dune::GFE::DiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
+ LocalDKFunctionD localDKFunctionDouble(deformationBasis, coefficientBasis, isometryCoefficients);
- /**
- * @brief Read effective prestrain Tensor
- */
- // Dune::FieldVector<adouble,3> Beffvec = parameterSet.get<Dune::FieldVector<adouble,3>>("effectivePrestrain", {0.0, 0.0, 0.0});
- // Dune::FieldMatrix<adouble,2,2> effectivePrestrain = {{(adouble)Beffvec[0], (adouble)Beffvec[2]}, {(adouble)Beffvec[2],(adouble)Beffvec[1]} };
- // printmatrix(std::cout, effectivePrestrain, "effective prestrain (Beff): ", "--");
+ if (parameterSet.get<bool>("writeVTK", 1))
+ {
+ std::cout << "write VTK..." << std::endl;
/**
- * @brief Get effective quadratic form Qhom
- *
- * input-vector: [q_1,q_2,q_3,q_12,q_13,q_23]
- * is assembled into a matrix where the off-diagonal entries are divided by 2 (compare with definition in the paper)
- * ( q_1 , 0.5*q_12 , 0.5*q_13 )
- * Q = ( 0.5*q_12 , q_2 , 0.5*q_23 )
- * ( 0.5*q_13 , 0.5*q_23 , q_3 )
+ * @brief Compute the displacement from the deformation.
+ * interpolate the identity and substract from the coefficient vector.
*/
- // Dune::FieldVector<adouble,6> Qhomvec = parameterSet.get<Dune::FieldVector<adouble,6>>("effectiveQuadraticForm", {1.0, 1.0, 1.0, 0.0, 0.0, 0.0});
- // Dune::FieldMatrix<adouble,3,3> Qhom = {{(adouble)Qhomvec[0], (adouble)0.5*Qhomvec[3], (adouble)0.5*Qhomvec[4]},
- // {(adouble)0.5*Qhomvec[3], (adouble)Qhomvec[1], (adouble)0.5*Qhomvec[5]},
- // {(adouble)0.5*Qhomvec[4], (adouble)0.5*Qhomvec[5], (adouble)Qhomvec[2]}};
- // printmatrix(std::cout, Qhom, "effective quadratic form (Qhom): ", "--");
+ VectorSpaceCoefficients identity(deformationBasis.size());
+ IdentityGridEmbedding<double> identityGridEmbedding;
+ interpolate(deformationBasis, identity, identityGridEmbedding);
- ////////////////////////////////////////////////////////////////////////
- // Create an assembler for the Discrete Kirchhoff Energy Functional (using ADOL-C)
- ////////////////////////////////////////////////////////////////////////
+ // Compute the displacement
+ auto displacement = x_out;
+ displacement -= identity;
+
+ // std::cout << "displacement.size():" << displacement.size() << std::endl;
+ auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, x_out);
+ auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(deformationBasis, displacement);
/**
- * @brief Setup nonconforming energy
+ * @brief We need to subsample, because VTK cannot natively display real third-order functions
*/
- // auto localEnergy_nonconforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergy<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce);
+ int subsamplingRefinement = parameterSet.get<int>("subsamplingRefinement", 2);
+ SubsamplingVTKWriter<GridView> vtkWriter(gridView, Dune::refinementLevels(subsamplingRefinement));
+
/**
- * @brief Setup conforming energy (WIP)
+ * @brief Interpolate and VTK-write analytical solution "u" from ParamterFile.
*/
- // auto localEnergy_conforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyZienkiewicz<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce);
- // auto localEnergy_conforming = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyZienkiewiczProjected<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce);
+ if (parameterSet.get<bool>("vtkwrite_analyticalSolution", 0))
+ {
+ auto pythonAnalyticalSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("displacement"), pyModule.get("displacementGradient"));
+ vtkWriter.addVertexData((pythonAnalyticalSolution), VTK::FieldInfo("displacement_analytical", VTK::FieldInfo::Type::vector, 3));
+ /**
+ * @brief Get the normal vector field of the surface parametrized
+ * by the analytical solution.
+ */
+ if (parameterSet.get<bool>("vtkWrite_analyticalSurfaceNormal", 0))
+ {
+ // Get the surface normal function.
+ auto pythonSurfaceNormal = Python::make_function<FieldVector<double,3> >(pyModule.get("surfaceNormal"));
+ vtkWriter.addVertexData(pythonSurfaceNormal, VTK::FieldInfo("surfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
+ }
+ }
+ //------------------------------------------------------------------------------------- TODO: OUTSOURCE
/**
- * @brief Setup energy featuring prestrain
+ * @brief TEST: Compute the discrete normal vector of the surface parametrized
+ * by the discrete solution.
*/
- // auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce, Qhom, effectivePrestrain, parameterSet);
- auto localEnergy_prestrain = std::make_shared<GFE::DiscreteKirchhoffBendingEnergyPrestrained<CoefficientBasis, LocalDKFunction, decltype(localForce), ACoefficient>>(localDKFunction, localForce, parameterSet, pyModule);
-
- // LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_conforming(localEnergy_conforming.get());
- // LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_nonconforming(localEnergy_nonconforming.get());
- LocalGeodesicFEADOLCStiffness<CoefficientBasis, Coefficient> localGFEADOLCStiffness_prestrain(localEnergy_prestrain.get());
- // GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_conforming(coefficientBasis, localGFEADOLCStiffness_conforming);
- // GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_nonconforming(coefficientBasis, localGFEADOLCStiffness_nonconforming);
- GeodesicFEAssembler<CoefficientBasis, Coefficient> assembler_prestrain(coefficientBasis, localGFEADOLCStiffness_prestrain);
-
-
-
-
+ // auto surfaceNormalDiscreteCoefficients = computeDiscreteSurfaceNormal(localDKFunctionDouble, normalBasis);
+ //-------------------------------------------------------------------------------------
+ // auto surfaceNormalDiscrete = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3> >(normalBasis, surfaceNormalDiscreteCoefficients);
+ vtkWriter.addVertexData(displacementFunction, VTK::FieldInfo("displacement", VTK::FieldInfo::Type::vector, 3));
+ // vtkWriter.addVertexData(surfaceNormalDiscrete , VTK::FieldInfo("surfaceNormal_discrete", VTK::FieldInfo::Type::vector, 3));
+ vtkWriter.write(resultFileName);
+ }
+ /**
+ * @brief Measure errors.
+ * 1. Compute the Isometry-Error
+ * 2. Compute the L2-Error and H1-SemiError as well as the energy difference
+ * between the discrete deformation u_h and the analytical deformation u .
+ */
+ if (parameterSet.get<bool>("measure_isometryError", 0))
+ {
+ auto isometry_errors = isometryError(localDKFunctionDouble, gridView);
+ if(isometry_errors[1] > Isometry_threshold[experimentNumber-1]) // Isometry-L2-error
+ {
+ std::cerr << std::setprecision(9);
+ std::cerr << "Isometry-L2-error is to large! " << std::endl;
+ std::cerr << "Isometry-L2-error is to large: "<< isometry_errors[1] << " but threshold is " << Isometry_threshold[experimentNumber-1] << std::endl;
+ return 1;
+ }
+ }
+ if (parameterSet.get<bool>("measure_analyticalError", 0))
+ {
+ auto discretization_errors = measureAnalyticalError(localDKFunctionDouble,gridView,pyModule);
/**
- * @brief Create a solver:
- * - Riemannian Newton with Hessian modification
- * - Riemannian Trust-region
+ * @brief Check Quantities
+ *
*/
- RiemannianProximalNewtonSolver<CoefficientBasis, Coefficient> RNHMsolver;
- RiemannianTrustRegionSolver<CoefficientBasis, Coefficient> RTRsolver;
-
-
- std::string Solver_name = parameterSet.get<std::string>("Solver", "RNHM");
- double numerical_energy; //final discrete energy
-
- if(Solver_name == "RNHM")
+ // L2 - Discretization error
+ if(discretization_errors[0] > L2_threshold[experimentNumber-1])
{
-
- RNHMsolver.setup(*grid,
- &assembler_prestrain,
- isometryCoefficients,
- dirichletNodes,
- parameterSet);
-
- RNHMsolver.solve();
- isometryCoefficients = RNHMsolver.getSol();
- numerical_energy = RNHMsolver.getStatistics().finalEnergy;
- } else if (Solver_name =="RiemannianTR")
+ std::cerr << std::setprecision(9);
+ std::cerr << "L2-error is to large: "<<discretization_errors[0] << " but threshold is " << L2_threshold[experimentNumber-1] << std::endl;
+ return 1;
+ }
+ // H1(semi) - Discretization error
+ if(discretization_errors[1] > H1_threshold[experimentNumber-1])
{
- std::cout << "Using Riemannian Trust-region method for energy minimization." << std::endl;
- RTRsolver.setup(*grid,
- &assembler_prestrain,
- isometryCoefficients,
- dirichletNodes,
- parameterSet);
- RTRsolver.solve();
- isometryCoefficients = RTRsolver.getSol();
- numerical_energy = RTRsolver.getStatistics().finalEnergy;
- } else
- DUNE_THROW(Dune::Exception, "Unknown Solver type for bending isometries.");
-
-
-
- // Convert coefficient data structure from 'IsometryCoefficients' to 'VectorSpaceCoefficients'
- VectorSpaceCoefficients x_out(deformationBasis.size());
- isometryToVectorCoefficientMap(deformationBasis,coefficientBasis,x_out,isometryCoefficients);
-
- ////////////////////////////////
- // Output result
- ////////////////////////////////
- std::string baseNameDefault = "bending-isometries-";
- std::string baseName = parameterSet.get("baseName", baseNameDefault);
- std::string resultFileName = parameterSet.get("resultPath", "")
- + "/" + baseName
- + "_level" + std::to_string(parameterSet.get<int>("macroGridLevel"));
-
- if (parameterSet.get<bool>("conforming_DiscreteJacobian", 1))
- resultFileName = resultFileName + "_C";
- else
- resultFileName = resultFileName + "_NC";
-
-
- // Create a deformation function but this time with double-types.
- using LocalDKFunctionD = GFE::LocalDiscreteKirchhoffBendingIsometry<DeformationBasis, CoefficientBasis, IsometryCoefficients>;
- LocalDKFunctionD localDKFunctionDouble(deformationBasis, coefficientBasis, isometryCoefficients);
-
-
-
-
-
- if (parameterSet.get<bool>("writeVTK", 1))
- {
- std::cout << "write VTK..." << std::endl;
-
- /**
- * @brief Compute the displacement from the deformation.
- * interpolate the identity and substract from the coefficient vector.
- */
- VectorSpaceCoefficients identity(deformationBasis.size());
- IdentityGridEmbedding<double> identityGridEmbedding;
- interpolate(deformationBasis, identity, identityGridEmbedding);
-
- // auto identity_tmp = identity;
-
- // Compute the displacement
- auto displacement = x_out;
- displacement -= identity;
-
- // std::cout << "displacement.size():" << displacement.size() << std::endl;
- auto deformationFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, x_out);
- auto displacementFunction = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, displacement);
-
- /**
- * @brief We need to subsample, because VTK cannot natively display real third-order functions
- */
- int subsamplingRefinement = parameterSet.get<int>("subsamplingRefinement", 2);
- SubsamplingVTKWriter<GridView> vtkWriter(gridView, Dune::refinementLevels(subsamplingRefinement));
- // SubsamplingVTKWriter<GridView> vtkWriter(gridView, Dune::refinementLevels(2));
-
-
-
- /**
- * @brief Basis used to represent normal vector fields
- *
- */
- auto normalBasis = makeBasis(gridView,
- power<3>(
- lagrange<1>(),
- flatLexicographic()));
- // auto normalBasis = makeBasis(gridView,
- // power<3>(
- // lagrange<1>(),
- // blockedInterleaved()));
-
-
- // TEST Compute
-
-
- // auto normalLambda = [deformationFunction](const FieldVector<double,2>& x)
- // {
- // // deformationfunction.derivative() ... //needs binding?!
-
-
- // }
-
-
-
+ std::cerr << std::setprecision(9);
+ std::cerr << "H1-error is to large: "<< discretization_errors[1] << " but threshold is " << H1_threshold[experimentNumber-1] << std::endl;
+ return 1;
+ }
+ }
/**
- * @brief Interpolate and VTK-write analytical solution "u" from ParamterFile.
+ * @brief Write Energy values.
+ *
*/
- if (parameterSet.get<bool>("vtkwrite_analyticalSolution", 0))
+ // auto numerical_energy = solver.getStatistics().finalEnergy;
+ std::cout << "(Final) Energy of discrete solution: " << numerical_energy<< std::endl;
+ if (parameterSet.get<bool>("compare_EnergyValues", 0))
{
- // auto pythonAnalyticalSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("u"), pyModule.get("du"));
- auto pythonAnalyticalSolution = Python::makeDifferentiableFunction<FieldVector<double,3>(FieldVector<double,2>)>(pyModule.get("displacement"), pyModule.get("displacementGradient"));
-
-
- // deprecated: interpolate ...
- // VectorSpaceCoefficients y(deformationBasis.size());
- // interpolate(deformationBasis, y, pythonAnalyticalSolution);
- // // Compute the displacement
- // auto displacementAnalytical = y;
- // // displacementAnalytical -= identity_tmp;
- // displacementAnalytical -= identity;
-
+ auto analytical_energy = parameterSet.get<double>("analytical_energy");
+ auto energy_difference = analytical_energy - numerical_energy;
+ std::cout << "Analytical energy: " << analytical_energy<< std::endl;
+ std::cout << "Energy difference: " << energy_difference << std::endl;
- // auto pythonIdentity = Python::make_function<FieldVector<double,3>>(IdentityGridEmbedding<double>::operator())
-
-
- // auto displacementFunctionAnalytical = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, displacementAnalytical);
- // auto deformationFunctionAnalytical = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(deformationBasis, y);
- // vtkWriter.addVertexData(displacementFunctionAnalytical, VTK::FieldInfo("displacement_analytical", VTK::FieldInfo::Type::vector, 3));
- // vtkWriter.addVertexData(deformationFunctionAnalytical, VTK::FieldInfo("deformation_analytical", VTK::FieldInfo::Type::vector, 3));
-
- vtkWriter.addVertexData((pythonAnalyticalSolution), VTK::FieldInfo("displacement_analytical", VTK::FieldInfo::Type::vector, 3));
- /**
- * @brief Get the normal vector field of the surface parametrized
- * by the analytical solution.
- * - We represent the normal vector in a first order Lagrange-Power basis ('normalBasis').
- */
- if (parameterSet.get<bool>("vtkWrite_analyticalSurfaceNormal", 0))
+ if(energy_difference > Energy_threshold[experimentNumber-1] )
{
- // Get the surface normal function.
- auto pythonSurfaceNormal = Python::make_function<FieldVector<double,3>>(pyModule.get("surfaceNormal"));
-
-
- // deprecated: interpolate ...
- // std::vector<FieldVector<double,3>> normalVectorCoefficients(normalBasis.size());
- // Dune::Functions::interpolate(normalBasis, normalVectorCoefficients, pythonSurfaceNormal);
- // auto surfaceNormalAnalytical = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(normalBasis, normalVectorCoefficients);
- // vtkWriter.addVertexData(surfaceNormalAnalytical, VTK::FieldInfo("surfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
-
- vtkWriter.addVertexData(pythonSurfaceNormal, VTK::FieldInfo("surfaceNormal_analytical", VTK::FieldInfo::Type::vector, 3));
+ std::cerr << std::setprecision(9);
+ std::cerr << "Energy difference is to large:" << energy_difference << " but threshold is " << Energy_threshold[experimentNumber-1] << std::endl;
+ return 1;
}
}
- //------------------------------------------------------------------------------------- TODO: OUTSOURCE
- /**
- * @brief TEST: Compute the discrete normal vector of the surface parametrized
- * by the discrete solution.
- */
- auto surfaceNormalDiscreteCoefficients = computeDiscreteSurfaceNormal(localDKFunctionDouble, normalBasis);
- //-------------------------------------------------------------------------------------
-
- // Create DiscreteGlobalBasisFunctions.
- auto surfaceNormalDiscrete = Functions::makeDiscreteGlobalBasisFunction<FieldVector<double,3>>(normalBasis, surfaceNormalDiscreteCoefficients);
- vtkWriter.addVertexData(displacementFunction, VTK::FieldInfo("displacement", VTK::FieldInfo::Type::vector, 3));
- vtkWriter.addVertexData(surfaceNormalDiscrete , VTK::FieldInfo("surfaceNormal_discrete", VTK::FieldInfo::Type::vector, 3));
- vtkWriter.write(resultFileName);
- }
-
-
- /**
- * @brief Measure errors.
- * 1. Compute the Isometry-Error
- * 2. Compute the L2-Error and H1-SemiError as well as the energy difference
- * between the discrete deformation u_h and the analytical deformation u .
- */
- if (parameterSet.get<bool>("measure_isometryError", 0))
- {
- auto isometry_errors = isometryError(localDKFunctionDouble, gridView);
- if(isometry_errors[1] > Isometry_threshold[experimentNumber-1]) // Isometry-L2-error
- {
- std::cerr << std::setprecision(9);
- std::cerr << "Isometry-L2-error is to large! " << std::endl;
- std::cerr << "Isometry-L2-error is to large: "<< isometry_errors[1] << " but threshold is " << Isometry_threshold[experimentNumber-1] << std::endl;
- return 1;
- }
-
- }
-
- if (parameterSet.get<bool>("measure_analyticalError", 0))
- {
- auto discretization_errors = measureAnalyticalError(localDKFunctionDouble,gridView,pyModule);
-
-
- /**
- * @brief Check Quantities
- *
- */
- // L2 - Discretization error
- if(discretization_errors[0] > L2_threshold[experimentNumber-1])
- {
- std::cerr << std::setprecision(9);
- std::cerr << "L2-error is to large: "<<discretization_errors[0] << " but threshold is " << L2_threshold[experimentNumber-1] << std::endl;
- return 1;
- }
- // H1(semi) - Discretization error
- if(discretization_errors[1] > H1_threshold[experimentNumber-1])
- {
- std::cerr << std::setprecision(9);
- std::cerr << "H1-error is to large: "<< discretization_errors[1] << " but threshold is " << H1_threshold[experimentNumber-1] << std::endl;
- return 1;
- }
- }
-
-
-
- /**
- * @brief Write Energy values.
- *
- */
- // auto numerical_energy = solver.getStatistics().finalEnergy;
- std::cout << "(Final) Energy of discrete solution: " << numerical_energy<< std::endl;
- if (parameterSet.get<bool>("compare_EnergyValues", 0))
- {
- auto analytical_energy = parameterSet.get<double>("analytical_energy");
- auto energy_difference = analytical_energy - numerical_energy;
- std::cout << "Analytical energy: " << analytical_energy<< std::endl;
- std::cout << "Energy difference: " << energy_difference << std::endl;
-
- if(energy_difference > Energy_threshold[experimentNumber-1] )
- {
- std::cerr << std::setprecision(9);
- std::cerr << "Energy difference is to large:" << energy_difference << " but threshold is " << Energy_threshold[experimentNumber-1] << std::endl;
- return 1;
- }
- }
-
- // // Write the corresponding coefficient vector: verbatim in binary, to be completely lossless
- // char iFilename[200];
- // sprintf(iFilename, (resultFileName + ".data").c_str());
-
- // FILE* fpIterate = fopen(iFilename, "wb");
- // if (!fpIterate)
- // DUNE_THROW(SolverError, "Couldn't open file " << iFilename << " for writing");
-
- // for (size_t j=0; j<isometryCoefficients.size(); j++)
- // fwrite(&isometryCoefficients[j], sizeof(Coefficient), 1, fpIterate);
-
- // fclose(fpIterate);
-
-
- #if 0
- // Write the corresponding coefficient vector: verbatim in binary, to be completely lossless
- typedef BlockVector<typename Coefficient::CoordinateType> EmbeddedVectorType;
- EmbeddedVectorType xEmbedded(isometryCoefficients.size());
- for (size_t i = 0; i<isometryCoefficients.size(); i++)
- {
- xEmbedded[i] = isometryCoefficients[i].globalCoordinates();
- std::cout << "isometryCoefficients[i].globalCoordinates():" << isometryCoefficients[i].globalCoordinates() << std::endl;
-
- }
- std::ofstream outFile(resultFileName + ".data", std::ios_base::binary);
- MatrixVector::Generic::writeBinary(outFile, xEmbedded);
- outFile.close();
- ///////////////////////////////////////////
- // (Option) write Solution(DOF)-vector and vertex coordinates to .txt-File
- ///////////////////////////////////////////
- if (parameterSet.get<bool>("writeDOFvector", 0))
- writeDOFVector(gridView,targetDim, x, "DOFVectorR" + std::to_string(dim) + "_R" + std::to_string(targetDim) + ".txt");
- #endif
-
-
-
- std::cout << "TEST - " << experiment << "passed." << std::endl;
- std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
+ std::cout << "TEST - " << experiment << "passed." << std::endl;
+ std::cout << "Total time elapsed: " << globalTimer.elapsed() << std::endl;
}
std::cout << "Properties-shape-test passed." << std::endl;
return 0;
- }
\ No newline at end of file
+}
diff --git a/test/readmicrostructuretest.cc b/test/readmicrostructuretest.cc
index 0e728264ed1c943b9e2180e5fe12bedacadd7235..54ede70707107292a4913526de07a9d273355859 100644
--- a/test/readmicrostructuretest.cc
+++ b/test/readmicrostructuretest.cc
@@ -85,7 +85,7 @@ int main(int argc, char *argv[])
MPIHelper::instance(argc, argv);
Dune::Timer globalTimer;
- //--- setup Log-File
+ //--- setup Log-File
std::fstream log;
std::cout << "Current path is " << std::filesystem::current_path() << '\n';
@@ -94,26 +94,13 @@ int main(int argc, char *argv[])
std::cout << "dir_path: " << file_path.parent_path() << std::endl;
std::string dir_path = file_path.parent_path();
- // if (argc < 3)
- // DUNE_THROW(Exception, "Usage: ./Cell-Problem <python path> <python module without extension>");
-
- // Start Python interpreter
- // Python::start();
- // auto pyMain = Python::main();
- // pyMain.runStream()
- // << std::endl << "import math"
- // << std::endl << "import sys"
- // << std::endl << "sys.path.append('" << argv[1] << "')" << std::endl;
- // auto pyModule = pyMain.import(argv[2]);
-
-
// Relative path/Test version:
Python::start();
auto pyMain = Python::main();
pyMain.runStream()
- << std::endl << "import math"
- << std::endl << "import sys"
- << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
+ << std::endl << "import math"
+ << std::endl << "import sys"
+ << std::endl << "sys.path.append('" << dir_path << "')" << std::endl;
auto pyModule = pyMain.import("readmicrostructuretest");
ParameterTree parameterSet;
@@ -135,10 +122,9 @@ int main(int argc, char *argv[])
FieldVector<double,dim> lower({-1.0/2.0, -1.0/2.0, -1.0/2.0});
FieldVector<double,dim> upper({1.0/2.0, 1.0/2.0, 1.0/2.0});
- int gridLevel = 3;
-
- std::array<int, dim> nElements = {(int)std::pow(2,gridLevel) ,(int)std::pow(2,gridLevel) ,(int)std::pow(2,gridLevel)};
- std::cout << "Number of Grid-Elements in each direction: " << nElements << std::endl;
+ int microGridLevel = parameterSet.get<int>("microGridLevel", 1);
+ std::array<int, dim> nElements = {(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel) ,(int)std::pow(2,microGridLevel)};
+ std::cout << "Number of Grid-Elements in each direction: " << (int)std::pow(2,microGridLevel) << std::endl;
using CellGridType = YaspGrid<dim, EquidistantOffsetCoordinates<double, dim> >;
CellGridType grid_CE(lower,upper,nElements);
@@ -175,9 +161,9 @@ int main(int argc, char *argv[])
/**
* @brief Create instance of class
- * This needs to be a 'Python::Reference' and not 'Python::Callable'
+ * This needs to be a 'Python::Reference' and not 'Python::Callable'
* since Callable only works if __call__(self,x) is implemented in the python module!!!
- *
+ *
*/
Python::Reference microstructure = MicrostructureClass(); //Setup a constant microstructure
@@ -200,7 +186,7 @@ int main(int argc, char *argv[])
std::cout << "microstructure phaseType:" << phaseType << std::endl;
Dune::FieldVector<double,2> materialParameters(0);
- microstructure.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,2>>(materialParameters);
+ microstructure.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,2> >(materialParameters);
std::cout << "Lame-Parameters (mu,lambda): (" << materialParameters[0] << "," << materialParameters[1] << ") " << std::endl;
@@ -219,24 +205,24 @@ int main(int argc, char *argv[])
std::cout << "orthotropic material with material rotation axis: " << axis << std::endl;
std::cout << "orthotropic material with material rotation angle: " << angle << std::endl;
-
- microstructure.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,9>>(materialParameters_orthotropic);
+
+ microstructure.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldVector<double,9> >(materialParameters_orthotropic);
printvector(std::cout, materialParameters_orthotropic, "materialParameters_orthotropic: ", "--");
// anisotropic material setup
- Dune::FieldMatrix<double,6,6> materialParameters_anisotropic(0);
+ Dune::FieldMatrix<double,6,6> materialParameters_anisotropic(0);
phase = 4;
microstructure.get("phase" + std::to_string(phase) + "_type").toC<std::string>(phaseType);
std::cout << "microstructure phaseType:" << phaseType << std::endl;
- microstructure.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldMatrix<double,6,6>>(materialParameters_anisotropic);
+ microstructure.get("materialParameters_phase" + std::to_string(phase)).toC<Dune::FieldMatrix<double,6,6> >(materialParameters_anisotropic);
printmatrix(std::cout, materialParameters_anisotropic, "materialParameters_anisotropic: ", "--");
- //Get prestrain of phase
- auto prestrain1 = Python::make_function<Dune::FieldMatrix<double,3,3>>(Python::Callable(microstructure.get("prestrain_phase" + std::to_string(phase))));
+ //Get prestrain of phase
+ auto prestrain1 = Python::make_function<Dune::FieldMatrix<double,3,3> >(Python::Callable(microstructure.get("prestrain_phase" + std::to_string(phase))));
auto localPrestrain1 = localFunction(Dune::Functions::makeGridViewFunction(prestrain1, gridView_CE));
@@ -275,7 +261,7 @@ int main(int argc, char *argv[])
// auto correctorComputer = CorrectorComputer(Basis_CE, material, log, parameterSet);
// correctorComputer.assemble();
// correctorComputer.solve();
- std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType>>(Basis_CE, material, parameterSet);
+ std::shared_ptr<CorrectorComputer<decltype(Basis_CE),MaterialType> > correctorComputer = std::make_shared<CorrectorComputer<decltype(Basis_CE),MaterialType> >(Basis_CE, material, parameterSet);
correctorComputer->assemble();
correctorComputer->solve();
diff --git a/test/readmicrostructuretest.py b/test/readmicrostructuretest.py
index 68899911c22b20570598a0e8b5b8087a6d114c26..0b6295b80826ec019ae5b9cbb2a128cccae1da3f 100644
--- a/test/readmicrostructuretest.py
+++ b/test/readmicrostructuretest.py
@@ -74,35 +74,45 @@ class Microstructure:
+# parameterSet.printMicroOutput = 1 # Flag that allows to supress the output of the micro-problem.
+
+#############################################
+# Grid parameters
+#############################################
+# parameterSet.microGridLevel = 2
+
#############################################
# Assembly options
#############################################
-parameterSet.set_IntegralZero = 1 #(default = false)
-parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
-#parameterSet.arbitraryLocalIndex = 7 #(default = 0)
-#parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.set_IntegralZero = 1 #(default = false, This overwrites the option 'set_oneBasisFunction_Zero')
+parameterSet.set_oneBasisFunction_Zero = 1 #(default = false)
+# parameterSet.arbitraryLocalIndex = 7 #(default = 0)
+# parameterSet.arbitraryElementNumber = 3 #(default = 0)
+parameterSet.cacheElementMatrices = 1 # Use caching of element matrices
#############################################
-# Solver Options, Type: #1: CG - SOLVER , #2: GMRES - SOLVER, #3: QR - SOLVER (default), #4: UMFPACK - SOLVER
+# Solver Options, Type: #1: CHOLMOD (default) | #2: UMFPACK | #3: GMRES | #4 CG | #5 QR:
+# (maybe switch to an iterative solver (e.g. GMRES) if direct solver (CHOLMOD/UMFPACK) runs out of memory for too fine grids)
#############################################
-parameterSet.Solvertype = 3 # recommended to use iterative solver (e.g GMRES) for finer grid-levels
-parameterSet.Solver_verbosity = 0 #(default = 2) degree of information for solver output
+parameterSet.Solvertype = 1
+parameterSet.Solver_verbosity = 0 # (default = 2) degree of information for solver output
#############################################
# Write/Output options #(default=false)
#############################################
# --- (Optional output) write Material / prestrain / Corrector functions to .vtk-Files:
parameterSet.write_materialFunctions = 0 # VTK indicator function for material/prestrain definition
-
-# --- (Additional debug output)
-parameterSet.print_debug = 0 #(default=false)
-
+#parameterSet.write_prestrainFunctions = 1 # VTK norm of B (currently not implemented)
+parameterSet.MaterialSubsamplingRefinement= 2
# --- Write Correctos to VTK-File:
-parameterSet.write_VTK = 0
-
-# --- Use caching of element matrices:
-parameterSet.cacheElementMatrices = 1
-
-# The grid can be refined several times for a higher resolution in the VTK-file.
-parameterSet.subsamplingRefinement = 0
+parameterSet.writeCorrectorsVTK = 0
+# --- write effective quantities (Qhom.Beff) to .txt-files
+parameterSet.write_EffectiveQuantitiesToTxt = False
+#############################################
+# Debug options
+#############################################
+parameterSet.print_debug = 0 #(default=false)
+parameterSet.print_conditionNumber = 0
+parameterSet.print_corrector_matrices = 0
+parameterSet.write_checkOrthogonality = 0 #Check orthogonality (75) from the paper.
diff --git a/testsuite/energylandscape.mplstyle b/testsuite/energylandscape.mplstyle
new file mode 100644
index 0000000000000000000000000000000000000000..9d9b7d454224b815c1c283d2733cf1fa66349558
--- /dev/null
+++ b/testsuite/energylandscape.mplstyle
@@ -0,0 +1,62 @@
+text.usetex : True
+#text.latex.preamble = r'\usepackage{amsfonts}' # Makes Use of \mathbb possible.
+
+
+font.family : "serif"
+font.size : 9
+
+
+xtick.bottom : True
+xtick.major.size : 2
+xtick.minor.size : 1.5
+xtick.major.width : 0.75
+xtick.labelsize : 9
+xtick.major.pad : 1
+
+
+ytick.left : True
+ytick.major.size : 1
+ytick.minor.size : 1.5
+ytick.major.width : 0.2
+ytick.labelsize : 9
+ytick.major.pad : 1
+ytick.labelcolor : white
+
+#axes.tick_params.grid_alpha : 0.1
+
+
+axes.titlesize : 9
+axes.titlepad : 1
+axes.labelsize : 9
+axes.labelpad : 0.5
+axes.autolimit_mode : round_numbers
+
+
+axes.grid.axis : y
+
+
+#Adjust Legend:
+legend.frameon : True # Use frame for legend
+legend.framealpha : 0.5
+legend.fontsize : 9 # fontsize of legend
+#Adjust grid:
+axes.grid : True
+#axes.grid : False
+
+#axes.Axis.grid : True
+
+
+
+#axes.axisbelow : False
+
+
+
+
+grid.linewidth : 0.7
+grid.alpha : 1.0
+
+#grid.color : 'lightgray'
+grid.color : 'black'
+
+
+
diff --git a/testsuite/macro-problem-testsuite.py b/testsuite/macro-problem-testsuite.py
index 52e1dd45335ad589d9e19ffe6f00fc5318454745..9e3ef8de32880fca72b286dced5603d6c9724695 100644
--- a/testsuite/macro-problem-testsuite.py
+++ b/testsuite/macro-problem-testsuite.py
@@ -4,356 +4,275 @@ import sys
import re
import numpy as np
from prettytable import PrettyTable
-# import latextable
-# from texttable import Texttable
from tabulate import tabulate
-# import time
import importlib
-# import fileinput
-
-
-####################################################################
-# Usage:
-#
-# python3 macro-problem-testsuite.py CONTAINER_PATH_Flag <slurm_array_task_id>
-#
-# e.g. python3 /home/klaus/Desktop/Dune_master/dune-gfe/bending-isometries-testsuite/bending-isometries-testsuite.py 0 2
-#
-####################################################################
-
+import shutil
+from microstructure_PythonAddons import*
+# import time
-def SetParameterMaterialFunction(inputFunction, parameterName, parameterValue):
- with open(inputFunction+'.py', 'r') as file:
- filedata = file.read()
- filedata = re.sub('(?m)'+str(parameterName)+'\s?=.*',str(parameterName)+' = '+str(parameterValue),filedata)
- f = open(inputFunction+'.py','w')
- f.write(filedata)
- f.close()
-
+"""
+ Usage:
-# parameterArray=np.array([ ["rho", np.array([0, 1,2])], ["parameterSet.maxProximalNewtonSteps", [0, 10, 100]] ], dtype=object)
+ python3 macro-problem-testsuite.py CONTAINER_PATH_Flag <slurm_array_task_id>
-# Python list version:
-# parameterArray=[ ["rho", [0, 1,2]], ["parameterSet.maxProximalNewtonSteps", [0, 10, 100]] ]
+ For example:
+ python3 /home/klaus/Desktop/Dune_microsim/dune-microstructure/testsuite/macro-problem-testsuite 0 2
-# parameterArray=[ ["rho", [0,1,2,5]]]
+ 0: running on local machine (as opposed to a Container 1)
+ 2: run the second experiment in the 'scenarios' list.
+"""
-# ------------------------------------------------------------------------------------------------------------------------------------------------------------------------
-# ------------------------------------------------------------------------------------------------------------------------------------------------------------------------
-compute_BendingIsometry = True
+solve_MacroProblem = True
create_outputTable = False
-
# 1. Experiment 2. ExperimentPathExtension 3. MacroGridLevels, 4. Executable 5.(additional) parameterArray: [["ParameterName", ParameterValue], ...]
scenarios = [
- # ["buckling_experiment" , "/buckling_experiment", [3,3], "/macro-problem" , [["rho", [0,1,2,3,4,5]]] ],
- ["cylindrical_2variableBC" , "/macro-problem/variableBC", [3,3], "/macro-problem" , [["delta", [0.75]]] ],
- ["cylindrical_2variableBC" , "/macro-problem/variableBC", [3,3], "/macro-problem" , [["delta", [0.0]]] ],
- ["cylindrical_2variableBC_wood" , "/macro-problem/variableBC", [3,3], "/macro-problem" , [["delta", [0.1,0.25,0.5,1.0,1.5,2.0]]] ],
- ["buckling_experiment" , "/macro-problem/buckling_experiment", [3,3], "/macro-problem" , [["rho", [1.0]]] ],
- ["buckling_experiment_Top" , "/macro-problem/buckling_experiment", [3,3], "/macro-problem" , [["rho", [3,4,5]]] ],
- ["buckling_experiment_xAlignedTop" , "/macro-problem/buckling_experiment", [3,3], "/macro-problem" , [["rho", [5]]] ],
- ["buckling_experiment_xAlignedLow" , "/macro-problem/buckling_experiment", [3,3], "/macro-problem" , [["rho", [5]]] ],
- ["self-folding-box", "/macro-problem/self-folding-box", [5,5], "/macro-problem" , [["rho", [500]]] ],
- ["twisted-valley", "/macro-problem/Rumpf-Experiments", [2,2], "/macro-problem" , [["test", [1.0]]] ],
- ["diagonal-trusses", "/macro-problem/Rumpf-Experiments", [2,2], "/macro-problem" , [["test", [1.0]]] ],
- ["cylindrical_1", "", [0,0], "/micro-problem" , [["mu_phase1", [90,100,110]]] ],
- ["parametrized_laminate", "", [0,0], "/micro-problem" , [] ],
+ ["buckling_experiment" , "/macro-problem/buckling_experiment", [3,4,5], [["rho", [5.0]]] ],
+ ["cylindrical_2variableBC" , "/macro-problem/variableBC", [2], [["delta", [1.5]]] ],
+ ["buckling_experiment" , "/macro-problem/buckling_experiment", [3,4,5,6], [] ],
+ ["cylindrical_2variableBC" , "/macro-problem/variableBC", [2], [["delta", [0.25,0.5,1.0,1.5,2.0]]] ],
+ ["fibreRotation", "/macro-problem", [1,2,3], [] ],
+ ["MVM_infinitynorm", "/macro-problem", [3], [] ],
+ ["MVM_onenorm", "/macro-problem", [2], [] ],
+ ["MVM_infinitynorm", "/macro-problem", [2], [] ],
+ ["validation", "/macro-problem/validation", list(range(1,13,1)), [] ],
+ ["buckling_experiment_rho_0" , "/macro-problem/buckling_experiment", list(range(3,7,1)), [] ],
+ ["buckling_experiment_rho_1" , "/macro-problem/buckling_experiment", list(range(3,7,1)), [] ],
+ ["cylindrical_2variableBC_delta025" , "/macro-problem/variableBC", [2], [] ], #4
+ ["cylindrical_2variableBC_delta20" , "/macro-problem/variableBC", [2], [] ], #4
+ ["buckling_experiment" , "/macro-problem/buckling_experiment", [1,3], [["rho", [0.0]]] ],
+ ["buckling_experiment" , "/macro-problem/buckling_experiment", list(range(3,7,1)), [["rho", [1.0]]] ],
+ ["buckling_experiment" , "/macro-problem/buckling_experiment", [3], [["rho", [0.805,0.81,0.8105]]] ], #3
+ ["cylindrical_2variableBC" , "/macro-problem/variableBC", [3], [["delta", [1.3,1.35,1.4,1.45]]] ],
+ ["cylindrical_2variableBC" , "/macro-problem/variableBC", [3], [["delta", [0.1,0.25,0.5,0.75,1.0,1.5,2.0]]] ], #4
+ ["buckling_experiment" , "/macro-problem/buckling_experiment", [3], [["rho", [0.1,0.25,0.5,0.75,1.0,1.5]]] ],
+ ["cylindrical_2variableBC" , "/macro-problem/variableBC", [3], [["delta", [2.0]]] ],
+ ["cylindrical_2variableBC" , "/macro-problem/variableBC", [3], [["delta", [0.25]]] ],
+ ["cylindrical_2variableBC_wood" , "/macro-problem/variableBC", [3], [["delta", [0.1,0.25,0.5,1.0,1.5,2.0]]] ],
+ ["buckling_experiment_Top" , "/macro-problem/buckling_experiment", [3], [["rho", [3,4,5]]] ],
+ ["buckling_experiment_xAlignedTop" , "/macro-problem/buckling_experiment", [3], [["rho", [5]]] ],
+ ["buckling_experiment_xAlignedLow" , "/macro-problem/buckling_experiment", [3], [["rho", [5]]] ],
+ ["self-folding-box", "/macro-problem/self-folding-box", [5], [["rho", [500]]] ],
+ ["twisted-valley", "/macro-problem/Rumpf-Experiments", [2], [["test", [1.0]]] ],
+ ["diagonal-trusses", "/macro-problem/Rumpf-Experiments", [2], [["test", [1.0]]] ]
]
-print('sys.argv[0]', sys.argv[0])
-print('sys.argv[1]', sys.argv[1])
-print('sys.argv[2]', sys.argv[2])
-
+# print('sys.argv[0]', sys.argv[0])
+# print('sys.argv[1]', sys.argv[1])
+# print('sys.argv[2]', sys.argv[2])
+# print('list(range(3,7,1)):',list(range(3,7,1)))
CONTAINER = int(sys.argv[1])
slurm_array_task_id = int(sys.argv[2])
-
parameterFile = scenarios[slurm_array_task_id][0]
pathExtension = scenarios[slurm_array_task_id][1]
gridLevels = scenarios[slurm_array_task_id][2]
-executable = scenarios[slurm_array_task_id][3]
-parameterArray = scenarios[slurm_array_task_id][4]
-
-#Test
-# parameterArray = [[" -rho ", [4.0]]]
-
-
+executable = "/macro-problem"
+# executable = scenarios[slurm_array_task_id][3]
+parameterArray = scenarios[slurm_array_task_id][3]
+#Get current working directory:
+cwd = os.getcwd()
+modulePath = os.path.abspath(os.path.join(cwd, os.pardir))
print('pathExtension: ', pathExtension)
+print("Parent Directory is: ", modulePath)
+#gridLevels = [1]
-
-
-
-# conforming_DiscreteJacobian = scenarios[slurm_array_task_id][1]
-# INSTRUMENTED = scenarios[slurm_array_task_id][3]
-
-
-#Todo conforming option.
+#--- (Todo) conforming/Instrumented option.
conformity = ""
INSTRUMENTED = 0
conforming_DiscreteJacobian = 0
-
# if conforming_DiscreteJacobian:
# conformity = "_conforming"
# else:
# conformity = "_nonconforming"
-#Get current working directory:
-cwd = os.getcwd()
-
-modulePath = os.path.abspath(os.path.join(cwd, os.pardir))
-print("Parent Directory is: ", modulePath)
-
-
-# for experiment in scenarios: ..
-
-#Path for parameterFile
+"""
+ Define relevant paths.
+"""
if CONTAINER:
-
+ #--- Container version
# Barnard_Workspace = "/data/horse/ws/s7603593-microstructure/"
- #--- Barnard/CONTAINER version
+
pythonPath = "/dune/dune-microstructure/experiment" + pathExtension
- # resultPath = "outputs" + "_" + scenarios[slurm_array_task_id][0]
- # resultPath = Barnard_Workspace + "outputs" + "_" + scenarios[slurm_array_task_id][0]
-
+ # resultPath = Barnard_Workspace + "outputs" + "_" + scenarios[slurm_array_task_id][0]
resultPath = "outputs" + "_" + scenarios[slurm_array_task_id][0]
-
-
instrumentedPath = resultPath + "/instrumented"
executablePath = "/dune/dune-microstructure/build-cmake/src"
- # try:
- # os.mkdir(resultPath)
- # os.mkdir(instrumentedPath)
- # except OSError as error:
- # print(error)
-
- # resultPath = "/" + resultPath
- # instrumentedPath = "/"
+
+ # Path used for copying experiment parameter files (for safe modification)
+ new_ParameterPath = "tmp_experiments"
+ original_ParameterPath = pythonPath + "/" + parameterFile +'.py'
+
else :
#--- Local version
- # pythonPath = "/home/klaus/Desktop/Dune_bendIso/dune-microstructure/experiment" + pathExtension
- # resultPath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/outputs' + "_" + scenarios[slurm_array_task_id][0]
- # instrumentedPath = resultPath + "/instrumented"
- # executablePath = '/home/klaus/Desktop/Dune_bendIso/dune-microstructure/build-cmake/src'
pythonPath = modulePath + "/experiment" + pathExtension
resultPath = modulePath + "/outputs" + "_" + scenarios[slurm_array_task_id][0]
instrumentedPath = resultPath + "/instrumented"
executablePath = modulePath + '/build-cmake/src'
- # try:
- # os.mkdir(resultPath)
- # os.mkdir(instrumentedPath)
- # except OSError as error:
- # print(error)
-
-try:
- os.mkdir(resultPath)
- os.mkdir(instrumentedPath)
-except OSError as error:
- print(error)
-
+ # Path used for copying experiment parameter files (for safe modification)
+ # tmp_ExpPath = "/home/klaus"
+ new_ParameterPath = "/home/klaus"
+ original_ParameterPath = pythonPath + "/" + parameterFile +'.py'
+
+# Create output directories if non existent
+os.makedirs(resultPath, exist_ok=True)
+os.makedirs(instrumentedPath, exist_ok=True)
+
+executable = executablePath + executable
+path = os.getcwd()
+# print("Path: ", path)
+# print('new_ParameterPath : ', new_ParameterPath)
+# print('pythonPath: ', pythonPath)
-print('pythonPath: ', pythonPath)
+"""
+ Create a copy of the parameter-file.
+"""
+CreateParameterCopy(original_ParameterPath,new_ParameterPath,parameterFile)
-### Access ParameterFile variables.
+
+"""
+ Access ParameterFile variables.
+"""
sys.path.insert(0, pythonPath)
__import__(parameterFile, fromlist=['parameterSet'])
imported_module = importlib.import_module(parameterFile)
parameterSet = getattr(imported_module, "parameterSet")
-
-
-#--- Set update grid path if unstructured/GMSH-grid is used.
+# Check if unstructured grid is used & Update grid-path.
if( parameterSet.structuredGrid == 'false'):
- print('Update gridPath')
- SetParameterMaterialFunction(pythonPath + "/" + scenarios[slurm_array_task_id][0], 'gridPath' , "'" + str(pythonPath) + "'")
+ print('Update unstructured grid-Path.')
+ ModifyParameterFile(os.path.join(new_ParameterPath, parameterFile), 'gridPath' , "'" + str(pythonPath) + "'")
-# dim = parameterSet.dim
-# maxSolverSteps = parameterSet.maxProximalNewtonSteps
+# pathArray = [resultPath,instrumentedPath,new_ParameterPath,pythonPath]
-# executable = executablePath + "/macro-problem"
-executable = executablePath + executable
+"""
+ Solve the macroscopic minimization problem
+ for the given parameters.
+"""
+if solve_MacroProblem:
+ SolveMacroProblem(executable,parameterFile,gridLevels,parameterArray,conforming_DiscreteJacobian,resultPath,instrumentedPath,new_ParameterPath,pythonPath,INSTRUMENTED)
-path = os.getcwd()
-print("Path: ", path)
-############################################
-
-print('parameterArray:', parameterArray)
-print('len(parameterArray):', len(parameterArray))
-print('len(parameterArray[0][1]): ', len(parameterArray[0][1]))
-print('Number of different additional parameters:', len(parameterArray))
-# print('len(parameterArray)[1]:', len(parameterArray[1]))
-# print('len(parameterArray[0][1]):', len(parameterArray[0][1]))
-# print('parameterArray[0][1][1]:', parameterArray[0][1][1])
-
-# print('np.shape(parameterArray)[1]:', np.shape(parameterArray)[1])
-# print('np.shape(parameterArray[0][1]):', np.shape(parameterArray[0][1]))
-# print('np.shape(parameterArray[0][1])[1]:', np.shape(parameterArray[0][1])[1])
-
-
-
-# if len(parameterArray) == 0:
-# nParams = 1
-# else:
-# nParams = len(parameterArray)
-
- # if len(parameterArray) == 0:
- # paramValues = 1
- # else:
- # paramValues = len(parameterArray[i][1])
-
-# ------ Loops through Parameters for Material Function -----------
-# for i in range(0, np.shape(parameterArray)[1]):
-# for v in range(0,np.shape(parameterArray[i][1])[1]):
-for i in range(0, len(parameterArray)):
- for v in range(0,len(parameterArray[i][1])):
- print("------------------")
- print("New Loop")
- print("------------------")
- print('i:', i)
- print('v:', v)
- print('len(parameterArray[i][1]):', len(parameterArray[i][1]))
- # print('parameterArray[i][v]:', parameterArray[i][v])
-
- print('parameterName:' , parameterArray[i][0])
- print('parameterValue: ', parameterArray[i][1][v])
- # print('np.shape(parameterArray)[1]:', np.shape(parameterArray)[1])
- # print('np.shape(parameterArray[i][1]):', np.shape(parameterArray[i][1]))
- # print('np.shape(parameterArray[i][1])[1]:', np.shape(parameterArray[i][1])[1])
- parameterName = parameterArray[i][0]
- parameterValue = parameterArray[i][1][v]
-
-
-
-
- ## Alternative version: actually changing the parset file..
- # Change Parameters:
- print('...change input parameter:' , parameterName)
- SetParameterMaterialFunction(pythonPath + "/" + scenarios[slurm_array_task_id][0], parameterName , parameterValue)
-
-
-
- baseName = scenarios[slurm_array_task_id][0] + "_" + parameterArray[i][0] + str(parameterArray[i][1][v])
-
- #--- Compute discrete bending isometries
- if compute_BendingIsometry:
- processList = []
- for macroGridLevel in range(gridLevels[0],gridLevels[1]+1):
- # if conforming_DiscreteJacobian:
- # conformity = "_conforming"
- # else:
- # conformity = "_nonconforming"
-
- # LOGFILE = resultPath + "/" + parameterFile + conformity + "_macroGridLevel" + str(macroGridLevel) + parameterName + ".log"
- LOGFILE = resultPath + "/" + parameterFile + "_macroGridLevel" + str(macroGridLevel) + "_" + parameterName + "_" + str(parameterValue) + ".log"
-
- print('LOGFILE:', LOGFILE)
- print('executable:', executable)
- print('parameterFile:', parameterFile)
- print('resultPath:', resultPath)
-
- # testArray = [ " -rho " + str(8.0), " -beta " + str(0.10) ]
-
- # start_time = time.time()
- p = subprocess.Popen(executable + " " + pythonPath + " " + parameterFile
- + " -macroGridLevel " + str(macroGridLevel)
- + " -resultPath " + str(resultPath)
- + " -baseName " + str(baseName)
- + " -instrumentedPath " + str(instrumentedPath)
- + " -conforming_DiscreteJacobian " + str(conforming_DiscreteJacobian)
- + " -instrumented " + str(INSTRUMENTED)
- # + " -" + parameterName + " " + str(parameterValue)
- + " | tee " + LOGFILE, shell=True)
-
- p.wait() # wait
- # print("--- %s seconds ---" % (time.time() - start_time))
- print('------FINISHED PROGRAM on macroGridLevel:' + str(macroGridLevel))
- processList.append(p)
-
- # Wait for all simulation subprocesses before proceeding to the error measurement step
- exit_codes = [p.wait() for p in processList]
-
-
-# ------------ Create Output Table -----------------------------------------------------------------------------
+
+"""
+ Create Table with computational results.
+"""
if create_outputTable:
- #Setup Output-Table:
- x = PrettyTable()
- constraintError = 0.0
-
- x.title = parameterFile
- x.field_names = ["r", "#Triang/#DOF", "#Steps", "Energy difference", "discrete energy", "L2-Error" , "H1-Error", "L2-Isometry-Error", "wall-time" ]
- x.align["k"] = "l" # Left align
- x.padding_width = 1 # One space between column edges and contents (default)
-
- rows = []
- rows.append(["r", "#Triang/#DOF", "#Steps",r"$\lvert \cI(u) - \cI^h(u_h) \rvert$", "$\cI^h(u_h)$", r"$\lVert u - u_h_{L^2}\rVert_0$" , "wall-time" ])
-
- for macroGridLevel in range(gridLevels[0],gridLevels[1]+1):
-
- LOGFILE = resultPath + "/" + parameterFile + conformity + "_macroGridLevel" + str(macroGridLevel) + ".log"
- # Read Energy Values:
- with open(LOGFILE, 'r') as file:
- output = file.read()
-
-
- tmp_energyDiff = re.findall(r'(?m)Energy difference: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
- tmp_energyAnalytical = re.findall(r'(?m)Analytical energy: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
- tmp_energyDiscrete = re.findall(r'(?m)Energy of discrete solution: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
- tmp_step = re.findall(r'(?m)Step Number: (\d+)',output)
- tmp_reg = re.findall(r'(?m)regularization parameter: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)' ,output)
- tmp_dofs = re.findall(r'(?m)Degrees of Freedom: (\d+)',output)
- tmp_time = re.findall(r'(?m)Total time elapsed: (-?\d+\.?\d+\d?)',output)
- tmp_isoErrorL2 = re.findall(r'(?m)L2-Isometry-error: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
- tmp_isoErrorL1 = re.findall(r'(?m)L1-Isometry-error: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
- tmp_L2Error = re.findall(r'(?m)L2-error: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
- tmp_H1Error = re.findall(r'(?m)H1-error: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
- tmp_elements = re.findall(r'(?m)elements: (\d+)',output)
-
- # print('tmp_step:',tmp_step)
- print('tmp_step last:', int(tmp_step[-1]))
- print('tmp_dofs:',tmp_dofs)
- print('tmp_dofs last:', int(tmp_dofs[-1]))
- # print('type tmp_energy:', type(tmp_energy))
- print('tmp_energyDiscrete:', tmp_energyDiscrete)
- print('tmp_energyDiff:', tmp_energyDiff)
- print('tmp_energyAnalytical:', tmp_energyAnalytical)
- # print('tmp_energy last:', tmp_energy[-1])
- print('tmp_time:', tmp_time)
- print('tmp_isoErrorL2 :', tmp_isoErrorL2 )
- print('tmp_isoErrorL1 :', tmp_isoErrorL1 )
- print('tmp_L2Error :', tmp_L2Error )
- print('tmp_H1Error :', tmp_H1Error )
- print('tmp_elements :', tmp_elements )
-
-
- x.add_row([macroGridLevel, tmp_elements[-1], int(tmp_step[-1]), tmp_energyDiff[-1], tmp_energyDiscrete[-1], tmp_L2Error[-1],tmp_H1Error[-1], tmp_isoErrorL2[-1], tmp_time[-1]])
- # rows.append.([macroGridLevel, tmp_elements[-1], int(tmp_step[-1]), tmp_energyDiff[-1], tmp_energyDiscrete[-1], tmp_L2Error[-1],tmp_H1Error[-1], tmp_isoErrorL2[-1], tmp_time[-1]])
-
-
-
- # Write Table to text-file.
- tablefile = open(resultPath + "/" + parameterFile + conformity + "_table" + ".txt", "w")
- tablefile.write(str(x))
- tablefile.write('\n')
- # tablefile.write(str(tabulate(rows, headers='firstrow', tablefmt='latex_raw')))
- # tablefile.write(str(tabulate(rows, headers='firstrow')))
- tablefile.close()
-
-
- # Print Table
- print(x)
- # print(tabulate(rows, headers='firstrow', tablefmt='latex_raw'))
- # print(tabulate(rows, headers='firstrow'))
+ """
+ Create Table for each parameter in 'parameterArray' unless none is given
+ - Then create just one.
+ """
+ # ------ Loops through Parameters -----------
+ for i in range(0, len(parameterArray)) if len(parameterArray)>0 else [1]:
+ for v in range(0,len(parameterArray[i][1])) if len(parameterArray)>0 else [1]:
+
+ #Setup Output-Table:
+ prettyTable = PrettyTable()
+ constraintError = 0.0
+
+ parameterName = parameterArray[i][0]
+ parameterValue = parameterArray[i][1][v]
+
+ if len(parameterArray)>0:
+ prettyTable.title = parameterFile + "_" + parameterName + "_" + str(parameterValue)
+ else:
+ prettyTable.title = parameterFile
+
+
+ prettyTable.field_names = ["r", r"#Triang/#DOF", r"#Steps", r"discrete energy", r"Energy difference", r"L2-Error" , r"H1-Error", r"L2-Isometry-Error", r"wall-time" ]
+ prettyTable.align["k"] = "l" # Left align
+ prettyTable.padding_width = 1 # One space between column edges and contents (default)
+
+ # Create another Table which outputs Latex-Synthax.
+ latexTable = []
+ latexTable.append(["r", r"#Triang/#DOF", r"#Steps", r"$\cI^h(u_h)$", r"$\lvert \cI(u) - \cI^h(u_h) \rvert$", r"$\lVert u - u_h_{L^2}\rVert_0$" , r"wall-time" ])
+
+ for macroGridLevel in gridLevels:
+
+
+ if len(parameterArray)>0:
+ LOGFILE = resultPath + "/" + parameterFile + "_macroGridLevel" + str(macroGridLevel) + "_" + parameterName + "_" + str(parameterValue) + ".log"
+ else:
+ LOGFILE = resultPath + "/" + parameterFile + "_macroGridLevel" + str(macroGridLevel) + ".log"
+
+ print('LOGFILE usef for Table:', LOGFILE)
+ # Read Energy Values:
+ with open(LOGFILE, 'r') as file:
+ output = file.read()
+
+
+ tmp_energyAnalytical = re.findall(r'(?m)Analytical energy: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
+ tmp_energyDiscrete = re.findall(r'(?m)Energy of discrete solution: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
+ tmp_step = re.findall(r'(?m)Step Number: (\d+)',output)
+ tmp_reg = re.findall(r'(?m)regularization parameter: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)' ,output)
+ tmp_dofs = re.findall(r'(?m)Degrees of Freedom: (\d+)',output)
+ tmp_time = re.findall(r'(?m)Total time elapsed: (-?\d+\.?\d+\d?)',output)
+ tmp_elements = re.findall(r'(?m)Number of Elements in the grid:\s*(\d+)',output)
+ tmp_isoErrorL2 = ['-']
+ tmp_isoErrorL1 = ['-']
+ tmp_L2Error = ['-']
+ tmp_H1Error = ['-']
+ tmp_energyDiff = ['-']
+
+ """
+ Check is isometry-error is measured.
+ """
+ if( parameterSet.measure_isometryError == 'true'):
+ tmp_isoErrorL2 = re.findall(r'(?m)L2-Isometry-error: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
+ tmp_isoErrorL1 = re.findall(r'(?m)L1-Isometry-error: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
+
+
+ if( parameterSet.measure_analyticalError == 'true'):
+ tmp_L2Error = re.findall(r'(?m)L2-error: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
+ tmp_H1Error = re.findall(r'(?m)H1-error: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
+ tmp_energyDiff = re.findall(r'(?m)Energy difference: (-?\d?\d?\d?\.?\d+[Ee]?[+\-]?\d?\d?)',output)
+
+
+ # print('LOGFILE:',LOGFILE)
+ # print('tmp_step:',tmp_step)
+ print('tmp_step last:', int(tmp_step[-1]))
+ print('tmp_dofs:',tmp_dofs)
+ print('tmp_dofs last:', int(tmp_dofs[-1]))
+ # print('type tmp_energy:', type(tmp_energy))
+ print('tmp_energyDiscrete:', tmp_energyDiscrete)
+ print('tmp_energyDiff:', tmp_energyDiff)
+ print('tmp_energyAnalytical:', tmp_energyAnalytical)
+ # print('tmp_energy last:', tmp_energy[-1])
+ print('tmp_time:', tmp_time)
+ print('tmp_isoErrorL2 :', tmp_isoErrorL2 )
+ print('tmp_isoErrorL1 :', tmp_isoErrorL1 )
+ print('tmp_L2Error :', tmp_L2Error )
+ print('tmp_H1Error :', tmp_H1Error )
+ print('tmp_elements :', tmp_elements )
+
+ # Add Table rows.
+ prettyTable.add_row([macroGridLevel, tmp_elements[-1], int(tmp_step[-1]),tmp_energyDiscrete[-1], tmp_energyDiff[-1], tmp_L2Error[-1],tmp_H1Error[-1], tmp_isoErrorL2[-1], tmp_time[-1]])
+ latexTable.append([macroGridLevel, tmp_elements[-1], int(tmp_step[-1]) ,tmp_energyDiscrete[-1], tmp_energyDiff[-1], tmp_L2Error[-1],tmp_H1Error[-1], tmp_isoErrorL2[-1], tmp_time[-1]])
+
+
+ # Write Tables to text-file.
+ tablefile = open(resultPath + "/" + parameterFile + conformity + "_table" + ".txt", "w")
+ tablefile.write(str(prettyTable))
+ tablefile.write('\n')
+ # Write Latex-Table
+ tablefile.write(str(tabulate(latexTable, headers='firstrow', tablefmt='latex_raw')))
+ tablefile.close()
+
+ # Print Table
+ print(prettyTable)
+ print(tabulate(latexTable, headers='firstrow', tablefmt='latex_raw'))
+ # print(tabulate(latexTable, headers='firstrow',tablefmt='pipe'))
+ # print(tabulate(latexTable, headers='firstrow',tablefmt='grid'))
diff --git a/testsuite/microstructure-testsuite.py b/testsuite/microstructure-testsuite.py
index 2cab32f5cea24463efff70a17b6bbdd5d692d0e1..3aa58e7cbd8345119c9cb426979a6b26d2a453ba 100644
--- a/testsuite/microstructure-testsuite.py
+++ b/testsuite/microstructure-testsuite.py
@@ -6,12 +6,11 @@ import matplotlib as mpl
import matplotlib.pyplot as plt
import matplotlib.colors as colors
from matplotlib import cm
+from matplotlib.cm import get_cmap
from matplotlib.colors import ListedColormap, LinearSegmentedColormap
-
-
from matplotlib.ticker import LogLocator
+from scipy.interpolate import CubicSpline #Test
import codecs
-
import json
import math
import subprocess
@@ -19,537 +18,66 @@ import fileinput
from matplotlib.ticker import MultipleLocator,FormatStrFormatter,MaxNLocator
from scipy.optimize import minimize_scalar
import importlib
-
from microstructure_PythonAddons import *
-
-
-
-
-# --------------------- Helper functions----------------------------------------------------------
-# def energy(kappa,alpha,Q,B) :
-# """
-# Energy evaluation for given effective quantities Q and B
-# with input:
-# * curvature: kappa
-# * angle: alpha
-# """
-# # --- TEST (This energy should be zero):
-# # B = np.array([1.0,0.0,0])
-# # kappa = 1.0
-# # alpha = 0
-
-# # print('Q:', Q)
-# # print('B:',B)
-# # print('kappa*np.array([[np.cos(alpha)**2],[np.sin(alpha)**2],[np.sqrt(2)*np.cos(alpha)*np.sin(alpha)]]):', kappa*np.array([[np.cos(alpha)**2],[np.sin(alpha)**2],[np.sqrt(2)*np.cos(alpha)*np.sin(alpha)]]))
-
-# # # G=(kappa*np.array([[np.cos(alpha)**2],[np.sin(alpha)**2],[np.sqrt(2)*np.cos(alpha)*np.sin(alpha)]]))-B
-# # G=kappa*np.array([[np.cos(alpha)**2],[np.sin(alpha)**2],[np.sqrt(2)*np.cos(alpha)*np.sin(alpha)]])-B
-# # print('G:',G)
-# # print('np.transpose(G):',np.transpose(G))
-# # print('np.matmul(Q,G)',np.matmul(Q,G))
-# # print('QUANTITY:', np.matmul(np.transpose(G),np.matmul(Q,G)))
-# # print('energy:', np.matmul(np.transpose(G),np.matmul(Q,G))[0,0])
-# # # return np.matmul(np.transpose(G),np.matmul(Q,G))[0,0] #BUG: This is wrong!
-
-
-
-# #--- New Version (13-5-24)
-# # write kappa/alpha as minimizer which is a symmetric 2x2 matrix
-# # expressed in the canonical basis:
-# # G = np.array(kappa*np.array([np.cos(alpha)**2, np.sin(alpha)**2, np.sqrt(2)*np.cos(alpha)*np.sin(alpha)]))
-# G = kappa*np.array([np.cos(alpha)**2, np.sin(alpha)**2, np.sqrt(2)*np.cos(alpha)*np.sin(alpha)])
-# print('G:',G)
-# G = G - B;
-
-
-# G_transposed = np.transpose(G);
-# # print('G:',G)
-# # print('G - B', G-B)
-# # print('G tranposed:', G_transposed)
-# # energyValue = G_transposed.dot((Q.dot(G)))
-# # # print('G_transposed.dot((Q.dot(G))): ', G_transposed.dot((Q.dot(G))))
-# # print('type(energyValue)', type(energyValue[0]))
-
-# return G_transposed.dot((Q.dot(G)));
-
-
-#alternative version:
-# def energy(kappa,alpha,Q,B) :
-# G = np.array(kappa*np.array([np.cos(alpha)**2, np.sin(alpha)**2, np.sqrt(2)*np.cos(alpha)*np.sin(alpha)]))
-# G = G - B;
-
-# energy = 0.0
-
-# for i in range(0,2):
-# for j in range (0,2):
-# energy += Q[i][j]*G[i]*G[j]
-
-# print('energy: ', energy)
-# print('energy[0]: ', energy[0])
-# # print('type new: ', type(energy[0]))
-# return energy[0]
-
-
-
-
-
-# def energy(kappa,alpha,Q,B) :
-# """
-# Energy evaluation for given effective quantities Q and B
-# with input:
-# * curvature: kappa
-# * angle: alpha
-# """
-# # Compute cylindrical minimizer coefficients from angle & curvature
-# G = kappa*np.array([np.cos(alpha)**2, np.sin(alpha)**2, np.sqrt(2)*np.cos(alpha)*np.sin(alpha)])
-# # Subtract the effective prestrain
-# G = G - B;
-# # Compute the energy
-# energy = (np.transpose(G)).dot((Q.dot(G)));
-# return energy
-
-# def xytokappaalpha(x,y):
-
-# if y>0:
-# return [np.sqrt(x**2+y**2), np.abs(np.arctan2(y,x))]
-# else:
-# return [-np.sqrt(x**2+y**2), np.abs(np.arctan2(y,x))]
-
-# # Read effective quantites
-# def ReadEffectiveQuantities(QFilePath, BFilePath):
-# # Read Output Matrices (effective quantities)
-# # From Cell-Problem output Files : ../outputs/Qmatrix.txt , ../outputs/Bmatrix.txt
-# # -- Read Matrix Qhom
-# X = []
-# # with codecs.open(path + '/outputs/QMatrix.txt', encoding='utf-8-sig') as f:
-# with codecs.open(QFilePath, encoding='utf-8-sig') as f:
-# for line in f:
-# s = line.split()
-# X.append([float(s[i]) for i in range(len(s))])
-# Q = np.array([[X[0][2], X[1][2], X[2][2]],
-# [X[3][2], X[4][2], X[5][2]],
-# [X[6][2], X[7][2], X[8][2]] ])
-
-# # -- Read Beff (as Vector)
-# X = []
-# # with codecs.open(path + '/outputs/BMatrix.txt', encoding='utf-8-sig') as f:
-# with codecs.open(BFilePath, encoding='utf-8-sig') as f:
-# for line in f:
-# s = line.split()
-# X.append([float(s[i]) for i in range(len(s))])
-# B = np.array([X[0][2], X[1][2], X[2][2]]) # Beff is written as Coefficients to .txt-file
-# return Q, B
-
-
-
-# #--- Select specific experiment [x, y] with date from results_x/y
-# def get_Q_B(basePath, index,perforation=False, perforatedLayer='upper'):
-# # results_index[0]/index[1]/...
-# #DataPath = './experiment/wood-bilayer_PLOS/results_' + str(data[0]) + '/' +str(data[1])
-# # DataPath = './results_' + str(index[0]) + '/' +str(index[1])
-# # DataPath = '.' + dirname + orientation + gridLevel + '/results_' + str(index[0]) + '/' +str(index[1])
-# # DataPath = dirname + orientation + gridLevel + '/results_' + str(index[0]) + '/' +str(index[1])
-# if perforation:
-# DataPath = basePath + '/results_' + perforatedLayer + '_' + str(index[0]) + '/' +str(index[1])
-# else :
-# DataPath = basePath + '/results_' + str(index[0]) + '/' +str(index[1])
-
-# QFilePath = DataPath + '/QMatrix.txt'
-# BFilePath = DataPath + '/BMatrix.txt'
-# # Read Q and B
-# Q, B = ReadEffectiveQuantities(QFilePath,BFilePath)
-# Q=0.5*(np.transpose(Q)+Q) # symmetrize
-# B=np.transpose([B])
-# return (Q,B)
-
-
-
-
-# def SetParameterMaterialFunction(inputFunction, parameterName, parameterValue):
-# with open(inputFunction+'.py', 'r') as file:
-# filedata = file.read()
-# filedata = re.sub('(?m)'+str(parameterName)+'\s?=.*',str(parameterName)+' = '+str(parameterValue),filedata)
-# f = open(inputFunction+'.py','w')
-# f.write(filedata)
-# f.close()
-
-
-
-
-
-
-
-# def createEnergyValues(r,theta,Q,B):
-# """
-# Compute energy values for a given meshgrid of curvature(r) and angle(theta) values
-# associated to the effective quantities Q and B.
-
-# the curvature array 'r' only features positive values. However the energy is also
-# evaluated for the corresponding negative values.
-# """
-
-# # Get number of sample points.
-# N = r.shape[0]
-
-# E=np.zeros(np.shape(r))
-# for k in range(0,N):
-# for l in range(0,N):
-# if theta[k,l]<np.pi:
-# E[k,l]=energy(r[k,l],theta[k,l],Q,B)
-# else:
-# E[k,l]=energy(-r[k,l],theta[k,l],Q,B)
-
-# return E
-
-
-# def getMinimizers(r,theta,E):
-# """"
-# Compute global minimizer (by Sampling method)
-# as well as the minimizer on the opposite sign - curvature scale
-
-# E: meshgrid evaluation of energy.
-# """
-# kappa=0
-# kappa_pos=0
-# kappa_neg=0
-
-
-# N = E.shape[0]
-# # Compute global Minimizer
-# [kmin,lmin]=np.unravel_index(E.argmin(),(N,N))
-# kappamin=r[kmin,lmin]
-# alphamin=theta[kmin,lmin]
-# Emin = E[kmin,lmin]
-
-# # Get minimizer in Positive curvature region
-# N_mid=int(N/2)
-# [kmin,lmin]=np.unravel_index(E[:N_mid,:].argmin(),(N_mid,N))
-# kappamin_pos=r[kmin,lmin]
-# alphamin_pos=theta[kmin,lmin]
-# Emin_pos=E[kmin,lmin]
-# # Get minimizer in Negative curvature region
-# [kmin,lmin]=np.unravel_index(E[N_mid:,:].argmin(),(N_mid,N))
-# kappamin_neg=r[kmin+N_mid,lmin]
-# alphamin_neg=theta[kmin+N_mid,lmin]
-# Emin_neg=E[kmin+N_mid,lmin]
-
-# print('Emin:', Emin)
-# print('Emin_pos:', Emin_pos)
-# print('Emin_neg:', Emin_neg)
-# print('energy in origin (0,0):' ,energy(0,0,Q,B))
-# print('E.min(): ',E.min())
-# print('E.max(): ',E.max())
-
-# minimizer_sign = 'positive'
-
-# if(abs(Emin_pos - Emin_neg)<1e-5):
-# print('Both minimizers have nearly the same energy - likely two minimizers.')
-# elif(Emin_pos < Emin_neg):
-# print('Global Minimizer has positive curvature.')
-# energyDifference = Emin_neg-Emin_pos
-# else:
-# print('Global Minimizer has negative curvature.')
-# minimizer_sign = 'negative'
-# energyDifference = Emin_pos-Emin_neg
-
-
-# if (minimizer_sign == 'positive'):
-# alpha_globalmin = alphamin
-# kappa_globalmin = kappamin
-# kappa_localmin = (-1)*kappamin_neg
-# alpha_localmin = alphamin_neg
-# else :
-# alpha_globalmin = alphamin
-# kappa_globalmin = (-1)*kappamin
-# kappa_localmin = kappamin_pos
-# alpha_localmin = alphamin_pos
-
-# print('kappa_globalmin: ', kappa_globalmin)
-# print('alpha_globalmin: ', alpha_globalmin)
-# print('kappa_localmin: ', kappa_localmin)
-# print('alpha_localmin: ', alpha_localmin)
-# print('energy (global minimizer)', energy(kappa_globalmin,alpha_globalmin,Q,B))
-# print('energy (local minimizer)', energy(kappa_localmin,alpha_localmin,Q,B))
-
-# return [kappa_globalmin,alpha_globalmin,kappa_localmin,alpha_localmin,energyDifference,minimizer_sign];
-
-
-
-
-# def createEnergyLandscapeFigure(r,theta,E,title_string='',normalize=True):
-# """
-# Create an energy landscape plot.
-# """
-# print('create energy landscape ...')
-
-# #Get Minimzers from sampled energy values.
-# [kappa_globalmin,alpha_globalmin,kappa_localmin,alpha_localmin,energyDifference,minimizer_sign] = getMinimizers(E)
-
-# # Normalize minimum energy to zero:
-# if normalize:
-# E=E-E.min()
-# print('E.min(): (after normalization): ',E.min())
-# print('E.max(): (after normalization): ',E.max())
-
-# levs=np.geomspace(0.01,E.max(),300) # Return numbers spaced evenly on a log scale (a geometric progression).
-
-# fig, ax1 = plt.subplots(ncols=1,nrows=1, figsize=(width,height), subplot_kw=dict(polar=True),gridspec_kw={'hspace': 0.4}, zorder=1)
-# fig.subplots_adjust(left=.1, bottom=0.01, right=.9, top=0.9) #adjust placement inside figure
-
-# """
-# Define new custom colormap (Test)
-# define top and bottom colormaps
-# """
-# # top = cm.get_cmap('Oranges_r', 128) # r means reversed version
-# # bottom = cm.get_cmap('Blues', 128)# combine it all
-# # newcolors = np.vstack((top(np.linspace(0, 1, 128)),
-# # bottom(np.linspace(0, 1, 128))))
-# # orange_blue = colors.ListedColormap(newcolors, name='OrangeBlue')
-# # bi_pride = LinearSegmentedColormap.from_list("", ["#D60270", "#9B4F96", "#0038A8"])
-# # testColor = LinearSegmentedColormap.from_list("", ["#380282","#0343DF","#FF7F50", "#FE420F"])
-
-# """
-# Plot with 'contourf':
-# Its important to hide the Contour LineStroke (remove white lines between contour levels) using set_edgecolor("face")
-# """
-# # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.5,vmin=E.min(),vmax=E.max()), cmap='brg', zorder=0)
-# # for c in pcm.collections:
-# # c.set_edgecolor("face")
-
-# """
-# Plot with 'pcolormesh'
-# * Reducing the image-quality/file-size by using rasterized option:
-# * Looks much smoother without 'rasterize' option however file-size gets out of hand..:
-# * Together with the 'dpi=..' option of figsave we can control the file-size
-# * Advantage: Text etc. is still vectorized without having too large files.
-
-# Problem: How to get the Colorbarticks in a uniform spacing when using PowerNorm (unclear)
-# """
-# pcm=ax1.pcolormesh(theta, r, E, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()) ,cmap='plasma', edgecolors='face', zorder=0, rasterized=True, alpha=0.8)
-
-
-
-# print('0.025*E.max():',0.025*E.max())
-# print('energyDifference: ', energyDifference)
-
-# """"
-# Create additional contour-line plot in the range between
-# zero and the energyDifference between both minimizers.
-# """
-# contour_levs = np.linspace(0.0001,energyDifference*1.0,6) # contour only from zero (Minimizer) to energyDifference between global/local Minimizer.
-# print('contour_levs:', contour_levs)
-# contours = plt.contour(theta, r, E, contour_levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), colors='ivory',linewidths=0.65, linestyles="dashed", alpha=0.8, zorder=2)
-# contours_min = plt.contour(theta, r, E, [contour_levs[1]], norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), colors='yellow',linewidths=0.65, linestyles="solid", alpha=0.9, zorder=2)
-
-# # Set Title.
-# ax1.set_title(title_string,pad=6)
-# # ax1.set_title(r"ratio $r=0.12$",pad=6)
-# # ax1.set_title(r""+parameterName + ": " + str(parameterValue),pad=20)
-
-
-# # Create a string if the minimal angle,curvature values used to label the global minimizer.
-# Minimizer_string = ': (' + str(np.round(np.rad2deg(alpha_globalmin),decimals=1)) + '°,' + str(np.round(abs(kappa_globalmin),decimals=2))+ ')'
-
-
-# # Mark Global Minimizer.
-# gmin = ax1.plot(alpha_globalmin, abs(kappa_globalmin),
-# markerfacecolor='cornflowerblue',
-# markeredgecolor='white', # marker edgecolor
-# marker='o', # each marker will be rendered as a circle
-# markersize=6, # marker size
-# markeredgewidth=1.0, # marker edge width
-# linewidth=0,
-# zorder=3,
-# alpha=1, # Change opacity
-# label = Minimizer_string)
-
-
-# plot_minimizerInOppositeCurvatureRegion = False #Note: this is not necessarily a local minimizer!
-
-
-# if plot_minimizerInOppositeCurvatureRegion:
-# ax1.plot(alpha_localmin, abs(kappa_localmin), # We need to take abs(kappa) since negative curvatures are still plotted with a positive kappa!
-# markerfacecolor='green',
-# markeredgecolor='white', # marker edgecolor
-# marker='D', # each marker will be rendered as a circle
-# markersize=4, # marker size
-# markeredgewidth=0.5, # marker edge width
-# linewidth=0, # line width
-# zorder=3,
-# alpha=1)
-
-
-# # #--- annotate local minimizer
-# # ax1.annotate( '('+ str(np.round(360-np.rad2deg(alpha_localmin),decimals=1)) + '°' + ',' + str(np.round(kappa_localmin,decimals=2))+ ')' ,
-# # xy = (alpha_localmin,abs(kappa_localmin)),
-# # # xytext=(-1.6, np.round(kappa_localmin,decimals=2)+0.9),
-# # # xytext=(-1.6, np.round(kappa_localmin,decimals=2)),
-# # xytext=(alpha_localmin,abs(kappa_localmin)),
-# # color='ivory',
-# # # zorder=5,
-# # fontsize='8')
-
-# print('Global Minimizer (alphamin, kappamin):' , '('+ str(np.round(np.rad2deg(alpha_globalmin),decimals=1)) + ',' + str(np.round(abs(kappa_globalmin),decimals=2))+ ')' )
-# print('Local Minimizer opposite curvature (alphamin, kappamin):' , '('+ str(np.round(360-np.rad2deg(alpha_localmin),decimals=1)) + ',' + str(np.round(abs(kappa_localmin),decimals=2))+ ')' )
-
-# #### Colorbar for Contourf-Plot:
-# # colorbarticks=np.geomspace(0.00001,E.max(),10)
-# # cbar = plt.colorbar(pcm, ax=[ax1], extend='max', ticks=colorbarticks, pad=0.1, orientation="horizontal")
-
-# # Colorbar for pcolormesh-Plot:
-# cbar = fig.colorbar(pcm, ax=ax1, pad=0.1, orientation="horizontal")
-
-
-# """
-# Set Tick labels
-# x: Angle
-# y: Radius
-
-# """
-# anglelabel=["0°","45°", "90°", "135°", "180°","-135°","-90°","-45°"]
-# # anglelabel=["0°","45°", "90°", "135°",r"$\pm180$° ","-135°","-90°","-45°"]
-# ax1.set_xticks(np.array([.0,1/4,2/4,3/4,1,5/4,6/4,7/4])*np.pi)
-# ax1.set_xticklabels(anglelabel)
-# # ax1.xaxis.grid(True, color='white')
-# ax1.xaxis.grid(True)
-# # We want to grid-axis to be on top of the contour lines to hide confusing contours on the grid-axis.
-# ax1.set_axisbelow(False)
-
-# # Adjust pad of xticklabels:
-# ax1.tick_params(pad=0.5)
-
-# # rotate radius axis labels.
-# ax1.set_rlabel_position(225)
-
-# # Adjust radial ticks.
-# radiusTickLength = 0.5
-# ax1.yaxis.set_major_locator(plt.FixedLocator(np.arange(radiusTickLength,curvatureLength,radiusTickLength)))
-# # (Alternative used fixed values)
-# # ax1.set_yticks(np.array([1,2,3]))
-# # ax1.set_yticklabels(["1","2","3"], zorder=20, color="white")
-# ax1.yaxis.set_tick_params(color='white', pad = 1.0)
-# ax1.yaxis.grid(True)
-
-# # Create Minor ticks manually as polar coordinates does not have the option.
-# tick = [ax1.get_rmax(),ax1.get_rmax()*0.97]
-# for t in np.deg2rad(np.arange(0,360,5)):
-# ax1.plot([t,t], tick, lw=0.1, color="k")
-
-
-# # Create a Legend.
-# legend = ax1.legend(bbox_to_anchor=[0.75, 0.15],loc='lower center',borderaxespad=0.1,frameon=True,bbox_transform=fig.transFigure,handletextpad=0.1)
-# frame = legend.get_frame()
-# frame.set_edgecolor('black')
-
-# # Save Figure as png.
-# # fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + '.png', dpi=100)
-# # Save Figure as pdf.
-# fig.set_size_inches(width, height)
-# fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + '.pdf', dpi=500) #dpi on
-# return
-
-
-# -------------------------- Matplotlib - parameters.--------------------------------------------------------------
-# plt.style.use("seaborn")
-# plt.style.use('paperstyle.mplstyle')
-
-#reset to default style-sheet_
-# plt.style.use('default')
-
-
-# plt.style.use("seaborn")
-
-# mpl.rcParams['text.usetex'] = True
-# mpl.rcParams["font.family"] = "serif"
-# mpl.rcParams["font.size"] = "8"
-# mpl.rcParams['xtick.bottom'] = True
-# mpl.rcParams['xtick.major.size'] = 2
-# mpl.rcParams['xtick.minor.size'] = 1.5
-# mpl.rcParams['xtick.major.width'] = 0.75
-# # mpl.rcParams['xtick.labelsize'] = 8
-# mpl.rcParams['xtick.major.pad'] = 0.1
-# mpl.rcParams['ytick.left'] = True
-# mpl.rcParams['ytick.major.size'] = 2
-# mpl.rcParams['ytick.minor.size'] = 1.5
-# mpl.rcParams['ytick.major.width'] = 0.75
-# mpl.rcParams['ytick.labelsize'] = 8
-# mpl.rcParams['ytick.major.pad'] = 1
-# mpl.rcParams['axes.titlesize'] = 8
-# mpl.rcParams['axes.titlepad'] = 1
-# # mpl.rcParams['axes.labelsize'] = 8
-# #Adjust Legend:
-# mpl.rcParams['legend.frameon'] = True # Use frame for legend
-# # mpl.rcParams['legend.framealpha'] = 0.5
-# mpl.rcParams['legend.fontsize'] = 8 # fontsize of legend
-# #Adjust grid:
-# # mpl.rcParams.update({"axes.grid" : True}) # Add grid
-# mpl.rcParams.update({"axes.grid" : False}) # Add grid
-# mpl.rcParams['axes.labelpad'] = 3
-# mpl.rcParams['grid.linewidth'] = 0.25
-# mpl.rcParams['grid.alpha'] = 0.75 # 0.75
-# mpl.rcParams['grid.linestyle'] = '-'
-# mpl.rcParams['grid.color'] = 'lightgray'#'black'
-# mpl.rcParams['text.latex.preamble'] = r'\usepackage{amsfonts}' # Makes Use of \mathbb possible.
-
-
-# plt.style.use("seaborn")
-# plt.style.use('paperstyle.mplstyle')
-# textwidth = 6.26894 #textwidth in inch
-# width = textwidth * 0.5
-# # width = textwidth * 0.33
-# # width = textwidth
-# # height = width/1.618 # The golden ratio.
-# height = textwidth/1.618 # The golden ratio.
-# # height = width
-# # height = width*1.618
-# ------------------------------------------------------------------------------------------------------------------
-
-
-# ------------------------------------------------------------------------------------------------------------------------------------------------------------------------
# ------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+
computeEffectiveQuantities = True
-computeEffectiveQuantities = False
+# computeEffectiveQuantities = False
plotEnergyLandscape_flag = True
plotEnergyLandscape_flag = False
displayMinimizer = False
displayMinimizer = True
plotContourLines = True
-# plotContourLines = False
-
+plotContourLines = False
plotCurvatureAngleParameterDependence_flag = True
-# plotCurvatureAngleParameterDependence_flag = False
+plotCurvatureAngleParameterDependence_flag = False
+
plotPrestrainParameterDependence_flag = True
plotPrestrainParameterDependence_flag = False
+plotEffectiveQuantitiesParameterDependence_flag = True
+plotEffectiveQuantitiesParameterDependence_flag = False
+
+
N=2000 #Number of Sampling Points
curvatureLength=2.5
# N=1000 #Number of Sampling Points
N=500 #Number of Sampling Points
+# N=100 #Number of Sampling Points
# curvatureLength=5
# 1. Experiment 2. ExperimentPathExtension 3. MicroGridLevels, 4. Executable 5.(additional) parameterArray: [["ParameterName", ParameterValue], ...]
scenarios = [
- ["prestrainedFibre", "/micro-problem", [3,3], "/micro-problem" , [["verticalMidpointPosition", [0,0.05,0.1,0.15,0.2,0.25]]] ], #0
- ["prestrainedFibre", "/micro-problem", [3,3], "/micro-problem" , [["fibreRadius", [0,0.05,0.1,0.15,0.2,0.25]]] ], #1
- ["prestrainedFibre_anisotropicB","/micro-problem", [3,3], "/micro-problem" , [["mu_phase1", [100]]] ], #2
- ["prestrainedFibre_anisotropicQ","/micro-problem", [3,3], "/micro-problem" , [["mu_phase1", [100]]] ], #3
- ["prestrainedFibre", "/micro-problem", [3,3], "/micro-problem" , [["mu_phase1", [100]]] ], #4
- ["prestrainedFibre", "/micro-problem", [3,3], "/micro-problem" , [["mu_phase1", [50,150]]] ], #5
- ["prestrainedFibre", "/micro-problem", [3,3], "/micro-problem" , [["mu_phase1", [75]]] ], #6
- # ["three-phase-composite", "", [3,3], "/micro-problem" , [["mu_phase1", [0.1,1,63.89,200]]] ],
- ["three-phase-composite", "/micro-problem", [3,3], "/micro-problem" , [["rho", [0,0.25,0.5,0.75,1.0,2.0]]] ], #Figure:... #7
- ["three-phase-composite", "/micro-problem", [3,3], "/micro-problem" , [["rho", [0.95]]] ], #Figure:... #8
- ["three-phase-composite", "/micro-problem", [3,3], "/micro-problem" , [["rho", [1.0]]] ], #Figure:... #9
- ["two-phase-composite", "/micro-problem", [3,3], "/micro-problem" , [["rho", [0.5]]] ], #Figure:... #10
- ["buckling_microproblem", "/micro-problem", [3,3], "/micro-problem" , [["rho", [0.0]]] ], #Figure:... #11
- ["buckling_microproblem", "/micro-problem", [3,3], "/micro-problem" , [["rho", [x/10.0 for x in range(1,11,1)]]] ], #Figure:... #12
- # ["three-phase-composite", "", [4,4], "/micro-problem" , [["rho", [1.0]]] ],
- ["parametrized_laminate", "/micro-problem", [3,3], "/micro-problem" , [["theta_mu", [0.5,1.0,10.0]]] ],
- ["parametrized_laminate", "/micro-problem", [3,3], "/micro-problem" , [["theta_rho", [0.1,0.2,0.25,0.5,1.0,2.0,10.0]]]],
- ["parametrized_laminate", "/micro-problem", [3,3], "/micro-problem" , [["theta_rho", [0.1]]] ]
+ ["prestrainedFibre", "/micro-problem", [3], [["mu_phase1", [0.9,1.2,1.5,2.0,3.0]]] ],
+ ["MVM_infinitynorm_microproblem", "/micro-problem", [1], [] ],
+ ["fibreRotation_microproblem", "/micro-problem", [4], [["alpha", [(np.pi/12.0)+ (x/10.0)*(np.pi/3.0-np.pi/12.0) for x in range(0,11,1)]]] ],
+ ["fibreRotation_microproblem", "/micro-problem", [4], [["theta", [x/10.0 for x in range(1,6,1)]]] ], #0
+ ["fibreRotation_microproblem", "/micro-problem", [3], [["alpha", [np.pi/12.0]]] ], #0
+ ["prestrainedFibre", "/micro-problem", [3], [["verticalMidpointPosition", [0,0.05,0.1,0.15,0.2,0.25]]] ],
+ ["prestrainedFibre", "/micro-problem", [3], [["fibreRadius", [0,0.05,0.1,0.15,0.2,0.25]]] ],
+ ["prestrainedFibre_anisotropicB", "/micro-problem", [3], [] ],
+ ["prestrainedFibre_anisotropicQ", "/micro-problem", [3], [] ],
+ ["prestrainedFibre", "/micro-problem", [3], [["mu_phase1", [0.9,1.5]]] ],
+ ["prestrainedFibre", "/micro-problem", [1,3], [] ],
+ ["prestrainedFibre", "/micro-problem", list(range(1,3,1)), [] ],
+ ["three-phase-composite", "/micro-problem", [3], [["rho", [0,0.25,0.5,0.75,1.0,2.0]]] ], #Figure:...
+ ["three-phase-composite", "/micro-problem", [3], [["rho", [0.95]]] ], #Figure:...
+ ["three-phase-composite", "/micro-problem", [3], [["rho", [1.0]]] ], #Figure:...
+ ["two-phase-composite", "/micro-problem", [3], [["rho", [0.5]]] ], #Figure:...
+ ["buckling_microproblem", "/micro-problem", [3], [["rho", [0.0]]] ], #Figure:...
+ ["buckling_microproblem", "/micro-problem", [3], [["rho", [x/10.0 for x in range(0,11,1)]]] ], #Figure:...
+ ["parametrized_laminate", "/micro-problem", [3], [["theta_mu", [0.5,1.0,10.0]]] ],
+ ["parametrized_laminate", "/micro-problem", [3], [["theta_rho", [0.1,0.2,0.25,0.5,1.0,2.0,10.0]]]],
+ ["parametrized_laminate", "/micro-problem", [3], [["theta_rho", [0.1]]]],
+ ["validation_microproblem", "/micro-problem", [3], [["theta_rho", [0.1]]]]
+ # ["prestrainedFibre", "/micro-problem", [3], [["mu_phase1", [1.2]]] ],
+ # ["prestrainedFibre", "/micro-problem", [3], [["mu_phase1", [0.9,1.2,1.5]]] ],
+ # ["prestrainedFibre", "/micro-problem", [3], [["mu_phase1", [20]]] ],
+ # ["prestrainedFibre", "/micro-problem", [3], [["mu_phase1", [20,27.8,35]]] ],
+ # ["three-phase-composite", "", [3], [["mu_phase1", [0.1,1,63.89,200]]] ],
]
@@ -557,10 +85,8 @@ print('sys.argv[0]', sys.argv[0])
print('sys.argv[1]', sys.argv[1])
print('sys.argv[2]', sys.argv[2])
-
-print('list(range(0,1,0.1)):',[x/10.0 for x in range(0,11,1)])
-
-
+# print('list(range(0,1,0.1)):',[x/10.0 for x in range(0,11,1)])
+# print('list(range(0,2,0.1)):',[x/10.0 for x in range(0,6,1)])
CONTAINER = int(sys.argv[1])
slurm_array_task_id = int(sys.argv[2])
@@ -568,14 +94,12 @@ slurm_array_task_id = int(sys.argv[2])
parameterFile = scenarios[slurm_array_task_id][0]
pathExtension = scenarios[slurm_array_task_id][1]
gridLevels = scenarios[slurm_array_task_id][2]
-executable = scenarios[slurm_array_task_id][3]
-parameterArray = scenarios[slurm_array_task_id][4]
+executable = "/micro-problem"
+# executable = scenarios[slurm_array_task_id][3]
+parameterArray = scenarios[slurm_array_task_id][3]
+print('len(parameterArray)',len(parameterArray))
+print('parameterArray:',parameterArray)
-#Test
-# parameterArray = [[" -rho ", [4.0]]]
-
-
-print('pathExtension: ', pathExtension)
@@ -583,7 +107,7 @@ print('pathExtension: ', pathExtension)
# cwd = os.getcwd()
modulePath = os.path.abspath(os.path.join(os.getcwd(), os.pardir))
print("Parent Directory is: ", modulePath)
-
+print('pathExtension: ', pathExtension)
#Path for parameterFile
if CONTAINER:
@@ -592,124 +116,54 @@ if CONTAINER:
resultPath = "outputs" + "_" + scenarios[slurm_array_task_id][0]
instrumentedPath = resultPath + "/instrumented"
executablePath = "/dune/dune-microstructure/build-cmake/src"
+ # Path used for copying experiment parameter files (for safe modification)
+
+ new_ParameterPath = "tmp_experiments"
+ original_ParameterPath = pythonPath + "/" + parameterFile +'.py'
else :
#--- Local version
pythonPath = modulePath + "/experiment" + pathExtension
resultPath = modulePath + "/outputs" + "_" + scenarios[slurm_array_task_id][0]
instrumentedPath = resultPath + "/instrumented"
executablePath = modulePath + '/build-cmake/src'
+ # Path used for copying experiment parameter files (for safe modification)
+ new_ParameterPath = "/home/klaus"
+ original_ParameterPath = pythonPath + "/" + parameterFile +'.py'
-try:
- os.mkdir(resultPath)
- os.mkdir(instrumentedPath)
-except OSError as error:
- print(error)
-
-print('pythonPath: ', pythonPath)
-
-
-### Access ParameterFile variables.
-sys.path.insert(0, pythonPath)
-__import__(parameterFile, fromlist=['parameterSet'])
-imported_module = importlib.import_module(parameterFile)
-parameterSet = getattr(imported_module, "parameterSet")
+
+# Create output directories if non existent
+os.makedirs(resultPath, exist_ok=True)
+os.makedirs(instrumentedPath, exist_ok=True)
executable = executablePath + executable
-
resultPathBase = resultPath
+# print('pythonPath: ', pythonPath)
+"""
+ Access ParameterFile variables.
+"""
+# sys.path.insert(0, pythonPath)
+# __import__(parameterFile, fromlist=['parameterSet'])
+# imported_module = importlib.import_module(parameterFile)
+# parameterSet = getattr(imported_module, "parameterSet")
-#----------------------------------------------------------------------------------------------------------------------
-if computeEffectiveQuantities:
- print('Computing effective quantities... ')
- for i in range(0, len(parameterArray)):
- for v in range(0,len(parameterArray[i][1])):
- print("------------------")
- print("New Loop")
- print("------------------")
- print('i:', i)
- print('v:', v)
- print('len(parameterArray[i][1]):', len(parameterArray[i][1]))
- # print('parameterArray[i][v]:', parameterArray[i][v])
- print('parameterName:' , parameterArray[i][0])
- print('parameterValue: ', parameterArray[i][1][v])
- # print('np.shape(parameterArray)[1]:', np.shape(parameterArray)[1])
- # print('np.shape(parameterArray[i][1]):', np.shape(parameterArray[i][1]))
- # print('np.shape(parameterArray[i][1])[1]:', np.shape(parameterArray[i][1])[1])
- parameterName = parameterArray[i][0]
- parameterValue = parameterArray[i][1][v]
- resultPath_parent = resultPathBase + "/" + parameterName
- resultPath = resultPath_parent + "/value_" + str(parameterValue)
- try:
- os.mkdir(resultPath_parent)
- except OSError as error:
- print("")
- # print(error)
- try:
- os.mkdir(resultPath)
- except OSError as error:
- print("")
- # print(error)
-
-
-
-
- ## Alternative version: actually changing the parset file..
- # Change Parameters:
- print('...change input parameter:' , parameterName)
- SetParameterMaterialFunction(pythonPath + "/" + scenarios[slurm_array_task_id][0], parameterName , parameterValue)
-
-
- baseName = scenarios[slurm_array_task_id][0] + "_" + parameterArray[i][0] + "_" + str(parameterArray[i][1][v])
-
- #--- Compute
- processList = []
- for microGridLevel in range(gridLevels[0],gridLevels[1]+1):
- # if conforming_DiscreteJacobian:
- # conformity = "_conforming"
- # else:
- # conformity = "_nonconforming"
-
- # LOGFILE = resultPath + "/" + parameterFile + conformity + "_macroGridLevel" + str(macroGridLevel) + parameterName + ".log"
- LOGFILE = resultPath + "/" + parameterFile + "_microGridLevel" + str(microGridLevel) + "_" + parameterName + "_" + str(parameterValue) + ".log"
-
- print('LOGFILE:', LOGFILE)
- print('executable:', executable)
- print('parameterFile:', parameterFile)
- print('resultPath:', resultPath)
-
- # testArray = [ " -rho " + str(8.0), " -beta " + str(0.10) ]
-
- # start_time = time.time()
- p = subprocess.Popen(executable + " " + pythonPath + " " + parameterFile
- + " -microGridLevel " + str(microGridLevel)
- + " -resultPath " + str(resultPath)
- + " -baseName " + str(baseName)
- # + " -" + parameterName + " " + str(parameterValue)
- + " | tee " + LOGFILE, shell=True)
-
- p.wait() # wait
- # print("--- %s seconds ---" % (time.time() - start_time))
- print('------FINISHED PROGRAM on macroGridLevel:' + str(microGridLevel))
- processList.append(p)
-
- # Wait for all simulation subprocesses before proceeding to the error measurement step
- exit_codes = [p.wait() for p in processList]
-
+if computeEffectiveQuantities:
+ """
+ Create a copy of the parameter-file.
+ """
+ CreateParameterCopy(original_ParameterPath,new_ParameterPath,parameterFile)
+ print('Parameter copying done.')
+ SolveMicroProblem(executable,parameterFile,gridLevels,parameterArray,resultPath,new_ParameterPath,pythonPath)
-# print('parameterArray:', parameterArray)
-# print('len(parameterArray):', len(parameterArray))
-# print('len(parameterArray[0][1]): ', len(parameterArray[0][1]))
-# print('Number of different additional parameters:', len(parameterArray))
#----------------------------------------------------------------------------------------------------------------------
if plotPrestrainParameterDependence_flag:
@@ -733,7 +187,7 @@ if plotPrestrainParameterDependence_flag:
parameterValue = parameterArray[i][1][v]
resultPath_parent = resultPathBase + "/" + parameterName
- resultPath = resultPath_parent + "/value_" + str(parameterValue)
+ resultPath = resultPath_parent + "/value_" + str(np.round(parameterValue,3))
try:
@@ -758,59 +212,21 @@ if plotPrestrainParameterDependence_flag:
# Test: symmetrize Qhom
# Q=0.5*(np.transpose(Q)+Q) # symmetrize
-
- # N=1000 #Number of Sampling Points
- # curvatureLength=1
- # r, theta = np.meshgrid(np.linspace(0,curvatureLength,N),np.radians(np.linspace(0, 360, N)))
-
- # E = createEnergyValues(r,theta,Q,B)
-
- # """"
- # Create the energy landscape from the dataset E.
- # If 'Normalize' is set to true the energy is normalized via
- # E=E-E.min()
- # """
- # # title_string = r"ratio $r=0.12$"
- # # title_string = r""+parameterName + ": " + str(parameterValue)
- # # title_string = ''
- # # createEnergyLandscapeFigure(r,theta,E,curvatureLength,Q,B,resultPath,parameterName,parameterValue,title_string,True)
- # # createEnergyLandscapeFigure(r,theta,E,resultPath,parameterName,parameterValue,title_string,True)
- # # createEnergyLandscapeFigure(r,theta,E,resultPath,parameterName,parameterValue,title_string,True,displayMinimizer)
-
- # [kappa_globalmin,alpha_globalmin,kappa_localmin,alpha_localmin,energyDifference,minimizer_sign] = getMinimizers(r,theta,E)
-
inputValues.append(parameterValue)
-
outputValues_b1.append(B[0])
outputValues_b2.append(B[1])
outputValues_b3.append(B[2])
# ---------------------------------------------------------------------------------------------------------
-
-
#--- Create Plot ...
- # Setup Plot style.
- plt.style.use("seaborn")
- # plt.style.use('paperstyle.mplstyle')
# Set correct Figure size (width/height) to make the figure fit the text without scaling.
textwidth = 6.26894 # textwidth in inch
width = textwidth * 0.5
- # height = textwidth/1.618 # The golden ratio.
- # height = width/1.618 # The golden ratio.
- height = width
-
+ height = width/1.618 # The golden ratio.
- #---------TEST
# Styling
- plt.style.use("seaborn-darkgrid")
- # plt.style.use("seaborn-whitegrid")
- # plt.style.use("seaborn")
- # plt.style.use("seaborn-paper")
- # plt.style.use('ggplot')
- # plt.rcParams["font.family"] = "Avenir"
- # plt.rcParams["font.size"] = 16
+ plt.style.use("seaborn-v0_8-darkgrid")
- # plt.style.use("seaborn-darkgrid")
mpl.rcParams['text.usetex'] = True
mpl.rcParams["font.family"] = "serif"
mpl.rcParams["font.size"] = "10"
@@ -825,20 +241,101 @@ if plotPrestrainParameterDependence_flag:
mpl.rcParams['ytick.major.size'] = 3
mpl.rcParams['ytick.minor.size'] = 1.5
mpl.rcParams['ytick.major.width'] = 0.75
-
mpl.rcParams.update({'font.size': 10})
mpl.rcParams['axes.labelpad'] = 3
#---------------------
+ # fig, axs = plt.subplots(ncols=2,nrows=1, figsize=(width,height), constrained_layout=True)
+
+ # # title_string = r"$B_1$" + "-" r""+parameterName
+ # title_string = ''
+
+
+ # print('plot curvature over parameter : '+ parameterName)
+ # print('inputValues:', inputValues)
+
+
+ # dataSets = [(outputValues_b1, r"$\widehat{B}^h_1$", r"$\widehat{B}^h_1$"),
+ # (outputValues_b2, r"$\widehat{B}^h_2$", r"$\widehat{B}^h_2$"),
+ # # (outputValues_b3, r"$\widehat{B}^h_3$", r"$\widehat{B}^h_3$")
+ # ]
+
+ # # Get a color map with distinct colors
+ # cmap = get_cmap('tab10') # Using matplotlib's qualitative color map
+
+
+
+ # """
+ # Plot each function in its own subplot with different colors.
+ # axs is a 2x3 grid of subplots (from plt.subplots(2, 3)).
+ # '.flat': converts this 2D grid into a 1D iterator, allowing you to loop through subplots sequentially (row-wise order):
+ # Subplot order: [axs[0,0], axs[0,1], axs[0,2], axs[1,0], axs[1,1], axs[1,2]]
+ # 'zip': pairs elements from two iterables:
+ # The first iterable: subplots (axs.flat)
+ # The second iterable: dataSet list
+ # This creates tuples of matched pairs: (axs[0,0], functions[0]), (axs[0,1], functions[1]), ..., (axs[1,2], functions[5])
+ # 'enumerate': Wraps around the zip result to add an index counter i.
+ # for each iteration it returns (index, (subplot, function_data))
+ # """
+ # for i, (ax, (y, title, label)) in enumerate(zip(axs.flat, dataSets)):
+ # color = cmap(i / len(dataSets)) # Get unique color from colormap
+ # ax.plot(inputValues, y, label=label, lw=1.5, color=color, marker='o', markersize=5 )
+
+ # ax.set_ylabel('')
+ # ax.set_xlabel(r"$\rho$",labelpad=4)
+
+ # # ax.xticks(np.arange(0, 1, step=0.2))
+ # ax.set_yticks(np.arange(0, 1.2, step=0.2))
+ # ax.set_xticks(np.arange(0, 1.2, step=0.5))
+
+
+
+ # # #TEST (Spline interpolation)
+ # # # Create cubic spline interpolation
+ # # interp_function = CubicSpline(inputValues, y)
+
+ # # #create "continuous" values
+ # # x_continuous = np.linspace(min(inputValues), max(inputValues), 100)
+ # # y_interp = interp_function(x_continuous)
+
+
+ # # ax.scatter(inputValues, y, color=color, s=35, zorder=5, edgecolor='black')
+ # # ax.plot(x_continuous, y_interp, color=color, lw=2, label=label)
+
+ # ax.legend()
+
+ # # Set square aspect ratio
+ # ax.set_aspect(1/1.618)
+
+ # ax.set_ylim(-0.1, 1.1)
+ # ax.set_xlim(-0.1, 1.1)
+
+ # # # Set axis limits with padding
+ # # # ax.set_xlim(min(inputValues)-0.01, max(inputValues)+0.01)
+ # # ax.set_xlim(min(inputValues)-0.05, max(inputValues)+0.05)
+ # # y_min, y_max = np.nanmin(y), np.nanmax(y)
+ # # # x_min, x_max = np.nanmin(y), np.nanmax(y)
+ # # ax.set_ylim(y_min - 0.1*(y_max - y_min),
+ # # y_max + 0.1*(y_max - y_min))
+
+
+
+
+
+ # Single Plot:
# Create a figure & axes object
# fig, ax1 = plt.subplots(ncols=1,nrows=1, figsize=(width,height),gridspec_kw={'hspace': 0.4}, zorder=1)
fig, ax1 = plt.subplots(ncols=1,nrows=1, figsize=(width,height), zorder=1)
# title_string = r"$B_1$" + "-" r""+parameterName
title_string = ''
- # ax1.set_title(title_string,pad=6)
+ x_label = r"$\rho$"
+ ax1.set_xlabel(x_label, labelpad=4)
+
+ ax1.set_ylim(-0.1, 1.0)
- print('plot curvature over parameter -'+ parameterName)
+
+ print('plot curvature over parameter :'+ parameterName)
print('inputValues:', inputValues)
print('outputValues:', outputValues_b1)
print('outputValues:', outputValues_b2)
@@ -847,27 +344,27 @@ if plotPrestrainParameterDependence_flag:
l1 = ax1.plot(inputValues,outputValues_b1 ,
label=r"$\widehat{B}^h_1$" ,
markerfacecolor='orange',
- markeredgecolor='white', # marker edgecolor
+ markeredgecolor='gray', # marker edgecolor
marker='o', # each marker will be rendered as a circle
- markersize=6, # marker size
+ markersize=4, # marker size
markeredgewidth=1.0, # marker edge width)
linewidth=1.5
)
l2 = ax1.plot(inputValues,outputValues_b2 ,
label=r"$\widehat{B}^h_2$",
# markerfacecolor='orange',
- markeredgecolor='white', # marker edgecolor
+ markeredgecolor='gray', # marker edgecolor
marker='s', # each marker will be rendered as a circle
- markersize=6, # marker size
+ markersize=4, # marker size
markeredgewidth=1.0, # marker edge width)
linewidth=1.5
)
l3 = ax1.plot(inputValues,outputValues_b3 ,
label=r"$\widehat{B}^h_3$",
# markerfacecolor='orange',
- markeredgecolor='white', # marker edgecolor
+ markeredgecolor='gray', # marker edgecolor
marker='^', # each marker will be rendered as a circle
- markersize=6, # marker size
+ markersize=4, # marker size
markeredgewidth=1.0, # marker edge width)
linewidth=1.5
)
@@ -925,7 +422,7 @@ if plotCurvatureAngleParameterDependence_flag:
parameterValue = parameterArray[i][1][v]
resultPath_parent = resultPathBase + "/" + parameterName
- resultPath = resultPath_parent + "/value_" + str(parameterValue)
+ resultPath = resultPath_parent + "/value_" + str(np.round(parameterValue,3))
try:
@@ -991,19 +488,21 @@ if plotCurvatureAngleParameterDependence_flag:
#--- Create Plot ...
# Setup Plot style.
- plt.style.use("seaborn")
+ # plt.style.use("seaborn")
+ # plt.style.use("seaborn-v0_8")
# plt.style.use('paperstyle.mplstyle')
# Set correct Figure size (width/height) to make the figure fit the text without scaling.
textwidth = 6.26894 # textwidth in inch
width = textwidth * 0.5
# height = textwidth/1.618 # The golden ratio.
- # height = width/1.618 # The golden ratio.
- height = width
+ height = width/1.618 # The golden ratio.
+ # height = width
#---------TEST
# Styling
- plt.style.use("seaborn-darkgrid")
+ # plt.style.use("seaborn-darkgrid")
+ plt.style.use("seaborn-v0_8-darkgrid")
# plt.style.use("seaborn-whitegrid")
# plt.style.use("seaborn")
# plt.style.use("seaborn-paper")
@@ -1041,12 +540,30 @@ if plotCurvatureAngleParameterDependence_flag:
# plt.subplots_adjust(wspace=0.4, hspace=0)
# title_string = outputQuantity + "-" r""+parameterName
- title_string = "curvature" + "-" r""+parameterName
- # title_string = ''
+ # title_string = "curvature" + "-" r""+parameterName
+ title_string = ''
ax1.set_title(title_string,pad=6)
+ if parameterName == "verticalMidpointPosition":
+ x_label = r"Vertical position $\ell$"
+ else :
+ x_label = r"Fibre width $r$"
+
+ # ax1.set_xlabel(r"Vertical position $\ell$", labelpad=4)
+ # # ax1.set_xlabel(r"Cross section radius $r$", labelpad=4)
+ ax1.set_xlabel(x_label, labelpad=4)
+ ax1.set_ylabel(r"Curvature $\kappa$", labelpad=4)
+
+ ax1.set_ylim(-0.03, 0.6)
+ ax1.set_xlim(-0.03, 0.3)
+
+
+ ax1.xaxis.set_major_locator(MultipleLocator(0.1))
+ # ax.xaxis.set_minor_locator(MultipleLocator(0.5))
+ ax1.yaxis.set_major_locator(MultipleLocator(0.2))
- print('plot curvature over parameter -'+ parameterName)
+
+ print('plot curvature over parameter : '+ parameterName)
print('inputValues:', inputValues)
print('outputValues_curvature:', outputValues_curvature)
@@ -1071,12 +588,15 @@ if plotCurvatureAngleParameterDependence_flag:
# plt.subplots_adjust(wspace=0.4, hspace=0)
# title_string = outputQuantity + "-" r""+parameterName
- title_string = "angle" + "-" r""+parameterName
- # title_string = ''
+ # title_string = "angle" + "-" r""+parameterName
+ title_string = ''
ax1.set_title(title_string,pad=6)
+ ax1.set_xlabel(r"Vertical position $\ell$", labelpad=4)
+ # ax1.set_xlabel(r"Cross section radius $r$", labelpad=4)
+ ax1.set_ylabel(r"Bending angle $\alpha$", labelpad=4)
- print('plot curvature over parameter -'+ parameterName)
+ print('plot curvature over parameter : '+ parameterName)
print('inputValues:', inputValues)
print('outputValues_angle:', outputValues_angle)
@@ -1095,6 +615,132 @@ if plotCurvatureAngleParameterDependence_flag:
#----------------------------------------------------------------------------------------------------------------------
if plotEnergyLandscape_flag:
print('Plot Energy landscape ...')
+
+ #Check if parameterArray is empty.
+ if not parameterArray:
+ print("parameterArray is empty")
+ resultPath_parent = resultPathBase
+ resultPath = resultPath_parent
+ try:
+ os.mkdir(resultPath_parent)
+ except OSError as error:
+ print("")
+ try:
+ os.mkdir(resultPath)
+ except OSError as error:
+ print("")
+
+ plot_minimizerInOppositeCurvatureRegion = False #this is not necessarily a local minimizer...
+ # Set Path for effective quantitites.
+ QFilePath = resultPath + "/QMatrix.txt"
+ BFilePath = resultPath + "/BMatrix.txt"
+
+ # Read the effective quantities from .txt-File
+ Q, B = ReadEffectiveQuantities(QFilePath,BFilePath)
+ print('Qhom: \n', Q)
+ print('Beff: \n', B)
+ # Test: symmetrize Qhom
+ # Q=0.5*(np.transpose(Q)+Q) # symmetrize
+
+
+ r, theta = np.meshgrid(np.linspace(0,curvatureLength,N),np.radians(np.linspace(0, 360, N)))
+ E = createEnergyValues(r,theta,Q,B)
+
+ """"
+ Create the energy landscape from the dataset E.
+ If 'Normalize' is set to true the energy is normalized via
+ E=E-E.min()
+ """
+ # title_string = r"ratio $r=0.12$"
+ title_string = ''
+
+ createEnergyLandscapeFigure(r,theta,E,resultPath,'','',title_string,True,displayMinimizer,plotContourLines)
+ else:
+ for i in range(0, len(parameterArray)):
+ for v in range(0,len(parameterArray[i][1])):
+ print("------------------")
+ print("New Loop")
+ print("------------------")
+ print('i:', i)
+ print('v:', v)
+ print('len(parameterArray[i][1]):', len(parameterArray[i][1]))
+ # print('parameterArray[i][v]:', parameterArray[i][v])
+ print('parameterName:' , parameterArray[i][0])
+ print('parameterValue: ', parameterArray[i][1][v])
+
+ parameterName = parameterArray[i][0]
+ parameterValue = parameterArray[i][1][v]
+
+ resultPath_parent = resultPathBase + "/" + parameterName
+ resultPath = resultPath_parent + "/value_" + str(np.round(parameterValue,3))
+ try:
+ os.mkdir(resultPath_parent)
+ except OSError as error:
+ print("")
+ # print(error)
+ try:
+ os.mkdir(resultPath)
+ except OSError as error:
+ print("")
+ # print(error)
+
+
+ plot_minimizerInOppositeCurvatureRegion = False #this is not necessarily a local minimizer...
+
+
+ # Set Path for effective quantitites.
+ QFilePath = resultPath + "/QMatrix.txt"
+ BFilePath = resultPath + "/BMatrix.txt"
+
+ # Read the effective quantities from .txt-File
+ Q, B = ReadEffectiveQuantities(QFilePath,BFilePath)
+ print('Qhom: \n', Q)
+ print('Beff: \n', B)
+ # Test: symmetrize Qhom
+ # Q=0.5*(np.transpose(Q)+Q) # symmetrize
+
+
+ # N=2000 #Number of Sampling Points
+
+ # curvatureLength=2
+
+ r, theta = np.meshgrid(np.linspace(0,curvatureLength,N),np.radians(np.linspace(0, 360, N)))
+
+ E = createEnergyValues(r,theta,Q,B)
+
+ """"
+ Create the energy landscape from the dataset E.
+ If 'Normalize' is set to true the energy is normalized via
+ E=E-E.min()
+ """
+ # title_string = r"ratio $r=0.12$"
+ title_string = r""+parameterName + ": " + str(parameterValue)
+ title_string = ''
+ # createEnergyLandscapeFigure(r,theta,E,curvatureLength,Q,B,resultPath,parameterName,parameterValue,title_string,True)
+ # createEnergyLandscapeFigure(r,theta,E,resultPath,parameterName,parameterValue,title_string,True)
+
+
+ createEnergyLandscapeFigure(r,theta,E,resultPath,parameterName,parameterValue,title_string,True,displayMinimizer,plotContourLines)
+ #--------------------------------------------------------------------------
+
+#----------------------------------------------------------------------------------------------------------------------
+if plotEffectiveQuantitiesParameterDependence_flag:
+ print('Plot Prestrain - Parameter dependence ...')
+
+
+ reduced = False
+
+ inputValues = []
+ outputValues_q1 = []
+ outputValues_q2 = []
+ outputValues_q3 = []
+ outputValues_q12 = []
+ outputValues_q23 = []
+ outputValues_q13 = []
+ outputValues_b1 = []
+ outputValues_b2 = []
+ outputValues_b3 = []
+ # outputValues_b3 = []
for i in range(0, len(parameterArray)):
for v in range(0,len(parameterArray[i][1])):
print("------------------")
@@ -1103,16 +749,16 @@ if plotEnergyLandscape_flag:
print('i:', i)
print('v:', v)
print('len(parameterArray[i][1]):', len(parameterArray[i][1]))
- # print('parameterArray[i][v]:', parameterArray[i][v])
print('parameterName:' , parameterArray[i][0])
print('parameterValue: ', parameterArray[i][1][v])
-
parameterName = parameterArray[i][0]
parameterValue = parameterArray[i][1][v]
resultPath_parent = resultPathBase + "/" + parameterName
- resultPath = resultPath_parent + "/value_" + str(parameterValue)
+ resultPath = resultPath_parent + "/value_" + str(np.round(parameterValue,3))
+
+
try:
os.mkdir(resultPath_parent)
except OSError as error:
@@ -1124,10 +770,6 @@ if plotEnergyLandscape_flag:
print("")
# print(error)
-
- plot_minimizerInOppositeCurvatureRegion = False #this is not necessarily a local minimizer...
-
-
# Set Path for effective quantitites.
QFilePath = resultPath + "/QMatrix.txt"
BFilePath = resultPath + "/BMatrix.txt"
@@ -1140,848 +782,257 @@ if plotEnergyLandscape_flag:
# Q=0.5*(np.transpose(Q)+Q) # symmetrize
- # N=2000 #Number of Sampling Points
-
- # curvatureLength=2
-
- r, theta = np.meshgrid(np.linspace(0,curvatureLength,N),np.radians(np.linspace(0, 360, N)))
-
- E = createEnergyValues(r,theta,Q,B)
-
- """"
- Create the energy landscape from the dataset E.
- If 'Normalize' is set to true the energy is normalized via
- E=E-E.min()
- """
- # title_string = r"ratio $r=0.12$"
- title_string = r""+parameterName + ": " + str(parameterValue)
- title_string = ''
- # createEnergyLandscapeFigure(r,theta,E,curvatureLength,Q,B,resultPath,parameterName,parameterValue,title_string,True)
- # createEnergyLandscapeFigure(r,theta,E,resultPath,parameterName,parameterValue,title_string,True)
-
-
- createEnergyLandscapeFigure(r,theta,E,resultPath,parameterName,parameterValue,title_string,True,displayMinimizer,plotContourLines)
-
-
-
-
- #--------------------------------------------------------------------------
-
- # (Test): eff quantities with x-axial minimizer.
- # B = np.array([1.0, 1.0, 0.0]);
-
- # Q = np.array([[3.0, 0.5, 0.0],
- # [0.5, 0.33, 0.0],
- # [0.0, 0.0, 1.0]]);
-
- # Q = np.array([[1.0, 0.0, 0.0],
- # [0.0, 2.0, 0.0],
- # [0.0, 0.0, 1.0]]);
-
- # B = np.array([0.0, 0.5, 0.0]);
-
-
- # (TEST) y-axial minimizer
- # Q = np.array([[1.0, 0.0, 0.0],
- # [0.0, 1.0, 0.0],
- # [0.0, 0.0, 1.0]]);
-
- # B = np.array([0.0, 5.0, 0.0]);
-
-
- # (TEST) pi/4 minimizer (NPG1 - Fig10)
- # Q = np.array([[1.0, 0.0, 0.0],
- # [0.0, 2.0, 0.0],
- # [0.0, 0.0, 1.0]]);
-
- # B = np.array([2.0, 1.5, 0.0]);
-
-
-
-
-
-
- # Compute local and global minimizer (by Sampling method)
- # kappa=0
- # kappa_pos=0
- # kappa_neg=0
- #
- # N=500 #Number of Sampling Points
- # # N=1500
- # # length=5
- # curvatureLength=2
+ # N=1000 #Number of Sampling Points
+ # curvatureLength=1
# r, theta = np.meshgrid(np.linspace(0,curvatureLength,N),np.radians(np.linspace(0, 360, N)))
- # # ----------------------------------------------------
- # # print('r.shape[0]', r.shape[0])
- # # # r, theta = np.meshgrid(np.linspace(0,curvatureLength,N),np.radians(np.linspace(0, 360, N, endpoint=False)))
- # # E=np.zeros(np.shape(r))
- # # for k in range(0,N):
- # # for l in range(0,N):
- # # if theta[k,l]<np.pi:
- # # E[k,l]=energy(r[k,l],theta[k,l],Q,B)
- # # else:
- # # E[k,l]=energy(-r[k,l],theta[k,l],Q,B)
- # # ----------------------------------------------------
-
-
# E = createEnergyValues(r,theta,Q,B)
- # # [kappa_globalmin,alpha_globalmin,kappa_localmin,alpha_localmin,energyDifference,minimizer_sign] = getMinimizers(E)
-
-
# """"
# Create the energy landscape from the dataset E.
# If 'Normalize' is set to true the energy is normalized via
# E=E-E.min()
# """
# # title_string = r"ratio $r=0.12$"
- # title_string = r""+parameterName + ": " + str(parameterValue)
- # # createEnergyLandscapeFigure(r,theta,E,title_string,True);
+ # # title_string = r""+parameterName + ": " + str(parameterValue)
+ # # title_string = ''
# # createEnergyLandscapeFigure(r,theta,E,curvatureLength,Q,B,resultPath,parameterName,parameterValue,title_string,True)
- # createEnergyLandscapeFigure(r,theta,E,resultPath,parameterName,parameterValue,title_string,True)
-
-
-
-
-
- # print('E.argmin():',E.argmin())
- # Compute local and global minimizer (by Sampling method)
-
- # print('E.shape[0]', E.shape[0])
-
- # ----------------------------------------------------
- # Compute Minimizer
- # [kmin,lmin]=np.unravel_index(E.argmin(),(N,N))
- # kappamin=r[kmin,lmin]
- # alphamin=theta[kmin,lmin]
-
- # Emin = E[kmin,lmin]
-
- # # Positive curvature region
- # N_mid=int(N/2)
- # [kmin,lmin]=np.unravel_index(E[:N_mid,:].argmin(),(N_mid,N))
- # kappamin_pos=r[kmin,lmin]
- # alphamin_pos=theta[kmin,lmin]
- # Emin_pos=E[kmin,lmin]
- # # Negative curvature region
- # [kmin,lmin]=np.unravel_index(E[N_mid:,:].argmin(),(N_mid,N))
- # kappamin_neg=r[kmin+N_mid,lmin]
- # alphamin_neg=theta[kmin+N_mid,lmin]
- # Emin_neg=E[kmin+N_mid,lmin]
- # #
-
- # # print('r:', r)
- # # print('theta:', theta)
- # # print('E:', E)
-
-
- # print('Emin:', Emin)
- # print('Emin_pos:', Emin_pos)
- # print('Emin_neg:', Emin_neg)
-
- # print('energy in origin (0,0):' ,energy(0,0,Q,B))
-
- # if(abs(Emin_pos - Emin_neg)<1e-5):
- # print('Both minimizers have nearly the same energy - likely two minimizers.')
-
- # if(Emin_pos < Emin_neg):
- # print('Global Minimizer has positive curvature.')
- # minimizer = 'positive'
- # energyDifference = Emin_neg-Emin_pos
- # else:
- # print('Global Minimizer has negative curvature.')
- # minimizer = 'negative'
- # energyDifference = Emin_pos-Emin_neg
-
- # print('E.min(): ',E.min())
- # print('E.max(): ',E.max())
-
- # # Normalize minimum energy to zero:
- # E=E-E.min()
-
-
- # print('E.min(): (after normalization): ',E.min())
- # print('E.max(): (after normalization): ',E.max())
-
-
- # if (minimizer == 'positive'):
- # alpha_globalmin = alphamin
- # kappa_globalmin = kappamin
- # kappa_localmin = (-1)*kappamin_neg
- # alpha_localmin = alphamin_neg
- # else :
- # alpha_globalmin = alphamin
- # kappa_globalmin = (-1)*kappamin
- # kappa_localmin = kappamin_pos
- # alpha_localmin = alphamin_pos
-
- # # print('kappamin_pos: ', kappamin_pos)
- # # print('alphamin_pos: ', alphamin_pos)
- # # print('kappamin_neg: ', kappamin_neg)
- # # print('alphamin_neg: ', alphamin_neg)
-
- # print('kappa_globalmin: ', kappa_globalmin)
- # print('alpha_globalmin: ', alpha_globalmin)
- # print('kappa_localmin: ', kappa_localmin)
- # print('alpha_localmin: ', alpha_localmin)
-
-
- # #evaluate energy on minimizers
- # # print('energy (kappa_pos)', energy(kappamin_pos,alphamin_pos,Q,B))
- # # print('energy (kappa_neg)', energy(-kappamin_neg,alphamin_neg,Q,B))
-
- # print('energy (global minimizer)', energy(kappa_globalmin,alpha_globalmin,Q,B))
- # print('energy (local minimizer)', energy(kappa_localmin,alpha_localmin,Q,B))
-
- # ----------------------------------------------------
-
-#--------------------------------------------------------------------------------------------------------------
-
-
- # # Emax=100
- # Emax = E.max()
- # # levs=np.geomspace(1,E.max()*0.5,50)
- # # levs=np.geomspace(1,Emax,50)
- # # levs=np.geomspace(0.1,Emax,100)
- # # print('np.round(E.min(),decimals=2):', np.round(E.min(),decimals=2))
- # # levs=np.geomspace(0.01,Emax,100)
-
- # levs=np.geomspace(0.01,E.max(),300) # Return numbers spaced evenly on a log scale (a geometric progression).
-
-
- # # print('levs:', levs)
-
- # # levs=np.geomspace(E.min(),E.max(),400) #(np.geomspace: Return numbers spaced evenly on a log scale)
- # # levs=np.geomspace(0,E.max(),400)
- # # levs=np.geomspace(1,Emax,400)
-
- # ## Create Figure
- # # fig, (ax1) = plt.subplots( nrows=1,figsize=(3,3.5),subplot_kw=dict(projection='polar'), gridspec_kw={'hspace': 0.4})
-
- # # fig, ax1 = plt.subplots( figsize=(width,height),subplot_kw=dict(projection='polar'), gridspec_kw={'hspace': 0.4})
- # # fig, ax1 = plt.subplots(ncols=1,nrows=1, figsize=(width,height),subplot_kw=dict(projection='polar'))
- # fig, ax1 = plt.subplots(ncols=1,nrows=1, figsize=(width,height), subplot_kw=dict(polar=True),gridspec_kw={'hspace': 0.4}, zorder=1)
- # fig.subplots_adjust(left=.1, bottom=0.01, right=.9, top=0.9) #adjust placement inside figure
-
- # # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.75), cmap='brg', zorder=0)
- # # pcm=ax1.contourf(theta, r, E,100 , norm=colors.PowerNorm(gamma=0.4), cmap='brg', zorder=0)
- # # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=1.0), cmap='brg', zorder=0)
- # # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.5), cmap='brg', zorder=0)
- # # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.mins(),vmax=E.max()), cmap='brg', zorder=0)
-
-
-
- # """
- # ---Test: Define new custom colormap
- # define top and bottom colormaps
- # """
- # top = cm.get_cmap('Oranges_r', 128) # r means reversed version
- # bottom = cm.get_cmap('Blues', 128)# combine it all
- # newcolors = np.vstack((top(np.linspace(0, 1, 128)),
- # bottom(np.linspace(0, 1, 128))))# create a new colormaps with a name of OrangeBlue
- # orange_blue = colors.ListedColormap(newcolors, name='OrangeBlue')
-
-
- # # bi_pride = LinearSegmentedColormap.from_list("", ["#D60270", "#9B4F96", "#0038A8"])
- # # testColor = LinearSegmentedColormap.from_list("", ["#4B0082", "#FF7F50"])
- # testColor = LinearSegmentedColormap.from_list("", ["#380282","#0343DF","#FF7F50", "#FE420F"])
-
- # """
- # Plot with Contourf:
- # """
- # # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.5,vmin=E.min(),vmax=E.max()), cmap='brg', zorder=0)
- # # # # # # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), cmap=mpl.cm.magma, zorder=0)
- # # # # # ###--- Hide Contour LineStroke (remove white lines between contour levels)
- # # for c in pcm.collections:
- # # c.set_edgecolor("face")
- # # pcm.collections.set_edgecolor("face")
-
- # #Test imshow
- # # pcm=ax1.imshow(E,extent=[r.min(), r.max(), np.degrees(theta.min()),np.degrees(theta.max())], norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), cmap=mpl.cm.magma, origin='lower')
-
- # ###
- # """
- # Test Pcolormesh
- # * Reducing the image-quality/file-size by using rasterized option:
- # * Looks much smoother without 'rasterize' option however file-size gets out of hand..:
- # * Together with the 'dpi=..' option of figsave we can control the file-size
- # * Advantage: Text etc. is still vectorized without having too large files.
-
- # Problem: How to get the Colorbarticks right (uniform spacing) when using PowerNorm (unclear)
- # """
- # pcm=ax1.pcolormesh(theta, r, E, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()) ,cmap='plasma', edgecolors='face', zorder=0, rasterized=True, alpha=0.8)
-
- # # pcm=ax1.pcolormesh(theta, r, E, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()) ,cmap=testColor, edgecolors='face', zorder=0, rasterized=True, alpha=0.7)
- # # pcm=ax1.pcolormesh(theta, r, E, norm=colors.PowerNorm(gamma=0.2,vmin=E.min(),vmax=E.max()) ,cmap='gray', edgecolors='face', zorder=0, rasterized=True, alpha=0.8)
- # # pcm=ax1.pcolormesh(theta, r, E, norm=colors.PowerNorm(gamma=0.5,vmin=E.min(),vmax=E.max()) ,cmap=orange_blue, edgecolors='face', zorder=0, rasterized=True, alpha=0.8)
-
-
- # # colormaptest=mpl.cm.get_cmap('viridis')
- # # colormaptest.set_under("k")
-
- # # pcm=ax1.pcolormesh(theta, r, E, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()) ,cmap=colormaptest, edgecolors='face', zorder=0, rasterized=True, shading='auto')
-
-
- # #--Test Approach from : https://stackoverflow.com/questions/61897393/unevenly-irregularly-spaced-data-for-colorbar-with-evenly-spaced-colors
- # # energyRange=np.linspace(E.min(),E.max(),10)
- # # cmap_vir = plt.get_cmap('viridis')
- # # colors = cmap_vir(np.linspace(0, 1, len(energyRange) - 1))
- # # cmap, norm = mpl.colors.from_levels_and_colors(energyRange, colors)
- # # pcm=ax1.pcolormesh(theta, r, E, cmap=cmap, norm=norm, rasterized=True)
-
-
- # # ColorNorm = colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max())
-
-
- # # pcm=ax1.pcolormesh(theta, r, E, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), cmap='viridis', edgecolors='face')
- # # pcm=ax1.pcolormesh(theta, r, E, norm=ColorNorm ,cmap='brg', edgecolors='face', zorder=0, rasterized=True, shading='auto')
-
- # # mpl.rcParams.update({"axes.grid" : False}) # Add grid
-
- # # pcm=ax1.pcolormesh(theta, r, E, norm=ColorNorm ,cmap='brg', edgecolors='face', zorder=0, rasterized=True)
- # #Test tricontour:
- # # pcm=ax1.tricontourf(theta, r, E)
-
- # # print('ColorNorm:', ColorNorm)
- # # print('ColorNorm(E.min()):',ColorNorm(E.min()))
- # # print('ColorNorm(E.max()/2.0):',ColorNorm(E.max()/2.0))
- # # print('ColorNorm(E.max()):',ColorNorm(E.max()))
-
-
- # print('0.025*E.max():',0.025*E.max())
- # print('energyDifference: ', energyDifference)
- # ### Create additional contour-line plot:
- # contour_levs=np.geomspace(0.01,E.max(),1) # levels used for an additional contour-plot
- # contour_levs = [0.1]
- # # contour_levs = np.linspace(0.001,0.5,4)
- # # contour_levs = np.linspace(0.001,0.25*E.max(),10)
- # # contour_levs = np.linspace(0.001,energyDifference*1.0,10) # contour only from zero (Minimizer) to energyDifference between global/local Minimizer.
-
- # # contour_levs_minimizer = np.linspace(0.001,energyDifference*0.5,6)
- # # contour_levs = np.linspace(0.0001,energyDifference*0.75,6) # contour only from zero (Minimizer) to energyDifference between global/local Minimizer.
- # contour_levs = np.linspace(0.0001,energyDifference*1.0,6) # contour only from zero (Minimizer) to energyDifference between global/local Minimizer.
- # print('contour_levs:', contour_levs)
- # contours = plt.contour(theta, r, E, contour_levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), colors='ivory',linewidths=0.65, linestyles="dashed", alpha=0.8, zorder=2)
- # contours_min = plt.contour(theta, r, E, [contour_levs[1]], norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), colors='yellow',linewidths=0.65, linestyles="solid", alpha=0.9, zorder=2)
- # # contours = plt.contour(theta, r, E, contour_levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), ,linewidths=0.1, linestyles="dashdot")
- # # contours = plt.contour(theta, r, E, contour_levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), cmap='plasma',linewidths=0.1, linestyles="dashdot")
- # # ax1.clabel(contours, inline=True, fontsize=4)
- # # contours = plt.contour(theta, r, E, contour_levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), colors='black',linewidths=0.1, linestyles="dashed")
- # # contours = plt.contour(theta, r, E, levs,norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), linewidths=0.1, linestyles="dashed", locator=mpl.ticker.LogLocator())
- # # plt.clabel(contours, inline=True, fontsize=4)
-
-
- # # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), cmap='terrain', zorder=0)
- # # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.5,vmin=E.min(),vmax=E.max()), cmap=plt.cm.bone, zorder=0)
-
-
- # ###--- Set Title
- # ax1.set_title(r"ratio $r=0.12$",pad=6)
- # # ax1.set_title(r"ratio $r=0.12$",pad=10)
- # # ax1.set_title(r""+parameterName + ": " + str(parameterValue),pad=20)
-
-
-
-
-
-
-
-
- # # # Plot global minimizer
- # # ax1.plot(alpha_globalmin, abs(kappa_globalmin),
- # # markerfacecolor='blue',
- # # markeredgecolor='white', # marker edgecolor
- # # marker='s', # each marker will be rendered as a circle
- # # markersize=4, # marker size
- # # markeredgewidth=0.5, # marker edge width
- # # linewidth=0,
- # # zorder=3,
- # # alpha=1, # Change opacity
- # # label = r"$\kappa_{0^\circ}(m^{-1})$")
- # # Plot global minimizer
-
-
- # Minimizer_string = ': ('+ str(np.round(np.rad2deg(alpha_globalmin),decimals=1)) + '°' + ',' + str(np.round(abs(kappa_globalmin),decimals=2))+ ')'
-
-
- # # Mark Global Minimizer with a dot.
- # gmin = ax1.plot(alpha_globalmin, abs(kappa_globalmin),
- # markerfacecolor='cornflowerblue',
- # markeredgecolor='white', # marker edgecolor
- # marker='o', # each marker will be rendered as a circle
- # markersize=6, # marker size
- # markeredgewidth=1.0, # marker edge width
- # linewidth=0,
- # zorder=3,
- # alpha=1, # Change opacity
- # label = Minimizer_string)
- # # label = r"$\kappa_{0^\circ}(m^{-1})$")
-
-
- # # # #TEST: For Annotation
- # # ax1.plot(np.deg2rad(290), curvatureLength+1,
- # # markerfacecolor='cornflowerblue',
- # # markeredgecolor='white', # marker edgecolor
- # # marker='o', # each marker will be rendered as a circle
- # # markersize=6, # marker size
- # # markeredgewidth=1.0, # marker edge width
- # # linewidth=0,
- # # zorder=3,
- # # alpha=1 # Change opacity
- # # )
-
- # if (minimizer_sign == 'positive'):
- # horizontal_annotation_alignment = 'left'
- # # kappa_sign_string = ""
- # else :
- # horizontal_annotation_alignment = 'right'
- # # kappa_sign_string = "-"
- # #--- annotate global minimizer
-
- # # ax1.annotate( '('+ str(np.round(np.rad2deg(alpha_globalmin),decimals=1)) + '°' + ',' + str(np.round(abs(kappa_globalmin),decimals=2))+ ')' ,
- # # # ax1.annotate( r'$(\theta_{m}, \kappa_m)=$' + '('+ str(np.round(np.rad2deg(alphamin),decimals=1)) + '°' + ',' + str(np.round(kappamin,decimals=1))+ ')' ,
- # # # xycoords='polar',
- # # # xy = (alpha_globalmin-0.15,abs(kappa_globalmin)+0.25),
- # # # xy = (alpha_globalmin-0.10,abs(kappa_globalmin)+0.1),
- # # xy = (alpha_globalmin,abs(kappa_globalmin)),
- # # # xytext=(0.10, np.round(kappa_globalmin,decimals=2)-0.25),
- # # # textcoords='polar',
- # # # textcoords='offset points',
- # # # xytext = (alpha_globalmin-0.10,abs(kappa_globalmin)+0.1),
- # # # textcoords='figure fraction',
- # # xycoords=ax1.get_xaxis_transform(),
- # # # xytext = (0.5,0.5),
- # # # xytext=(alpha_globalmin-0.25,abs(kappa_globalmin)+0.15), #Position of Text-annotation
- # # # rotation=np.rad2deg(alpha_globalmin),
- # # horizontalalignment=horizontal_annotation_alignment,
- # # verticalalignment="bottom",
- # # color='ivory',
- # # zorder=4,
- # # fontsize='9')
-
-
-
-
- # if plot_minimizerInOppositeCurvatureRegion:
- # # Plot local minimizer
- # # ax1.plot(alphamin_neg, kappamin_neg,
- # ax1.plot(alpha_localmin, abs(kappa_localmin), # We need to take abs(kappa) since negative curvatures are still plotted with a positive kappa!
- # markerfacecolor='green',
- # markeredgecolor='white', # marker edgecolor
- # marker='D', # each marker will be rendered as a circle
- # markersize=4, # marker size
- # markeredgewidth=0.5, # marker edge width
- # linewidth=0, # line width
- # zorder=3,
- # alpha=1)
-
-
- # #--- annotate local minimizer
- # ax1.annotate( '('+ str(np.round(360-np.rad2deg(alpha_localmin),decimals=1)) + '°' + ',' + str(np.round(kappa_localmin,decimals=2))+ ')' ,
- # xy = (alpha_localmin,abs(kappa_localmin)),
- # # xytext=(-1.6, np.round(kappa_localmin,decimals=2)+0.9),
- # # xytext=(-1.6, np.round(kappa_localmin,decimals=2)),
- # xytext=(alpha_localmin,abs(kappa_localmin)),
- # color='ivory',
- # # zorder=5,
- # fontsize='8')
-
-
- # # print('alphamin: ' , alphamin )
- # # print('kappamin: ' , kappamin )
- # # print('Global Minimizer (alphamin, kappamin):' , '('+ str(np.round(np.rad2deg(alphamin),decimals=1)) + ',' + str(np.round(kappamin,decimals=1))+ ')' )
- # print('Global Minimizer (alphamin, kappamin):' , '('+ str(np.round(np.rad2deg(alpha_globalmin),decimals=1)) + ',' + str(np.round(abs(kappa_globalmin),decimals=2))+ ')' )
- # # print('Local Minimizer (alphamin, kappamin):' , '('+ str(np.round(360-np.rad2deg(alphamin_neg),decimals=1)) + ',' + str(np.round(-kappamin_neg,decimals=1))+ ')' )
-
-
- # print('Local Minimizer opposite curvature (alphamin, kappamin):' , '('+ str(np.round(360-np.rad2deg(alpha_localmin),decimals=1)) + ',' + str(np.round(abs(kappa_localmin),decimals=2))+ ')' )
- # # ax1.annotate(alphamin, (alphamin,kappamin))
-
-
-
-
- # # rotate radius axis labels.
- # # ax1.set_rlabel_position(135)
-
- # colorbarticks=np.geomspace(0.00001,E.max(),10)
- # # # colorbarticks=np.geomspace(0.00001,Emax,4)
- # # colorbarticks=np.linspace(E.min(),E.max(),10)
- # # # colorbarticks=np.geomspace(0.00001,E.max(),14)
-
- # # linSeq = np.linspace(E.min(),E.max(),10)
- # # linSeq = np.geomspace(0.00001,Emax,10)
-
- # # colorbarticks = ColorNorm.inverse(((linSeq - E.min())/(E.max()-E.min()))**0.4)
-
-
- # # colorbarticks=ColorNorm(np.linspace(E.min(),E.max(),4)) * E.max()
-
-
-
- # #TEST: evenly sample values from E:
- # # numElems = 3
- # # idx = np.round(np.linspace(0, len(E) - 1, numElems)).astype(int)
- # # colorbarticks = E[0][idx]
- # print('colorbarticks:', colorbarticks)
-
-
-
- # # We need to map those colorbarticks to the colorbar.
-
- # #---Test
- # # axins = inset_axes( ax1,
- # # width="100%",
- # # height="5%",
- # # loc='lower center',
- # # borderpad=-5
- # # )
-
-
- # #-------------------
-
-
- # # cbar = fig.colorbar(pcm,ticks=energyRange)
-
-
- # # Colorbar for Contourf-Plot:
- # # cbar = plt.colorbar(pcm, ax=[ax1], extend='max', ticks=colorbarticks, pad=0.1, orientation="horizontal")
-
- # # Colorbar for pcolormesh-Plot:
- # # cbar = fig.colorbar(pcm, ax=ax1, pad=0.075, orientation="horizontal") # so far best with pcolormesh.
- # cbar = fig.colorbar(pcm, ax=ax1, pad=0.1, orientation="horizontal") # so far best with pcolormesh.
-
- # # cbar = plt.colorbar(pcm, ax=[ax1], extend='max', pad=0.1, orientation="horizontal")
-
- # # cbar = plt.colorbar(pcm, ax=[ax1], norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), extend='max', ticks=colorbarticks, pad=0.1, orientation="horizontal")
- # # fig.colorbar(pcm, ax=ax1, pad=0.1, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), ticks=colorbarticks, orientation="horizontal")
- # # cbar = plt.colorbar(pcm, ax=[ax1], extend='max', pad=0.2, orientation="horizontal")
- # # cbar = plt.colorbar(pcm, ax=[ax1], extend='max',norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), ticks=colorbarticks, pad=0.2, orientation="horizontal")
- # # fig.colorbar(pcm, ax=ax1, pad=0.1, ticks=colorbarticks, orientation="horizontal", spacing='proportional')
-
- # # fig.colorbar(pcm, ax=ax1, pad=0.1, orientation="horizontal", spacing='proportional')
-
-
+ # # createEnergyLandscapeFigure(r,theta,E,resultPath,parameterName,parameterValue,title_string,True)
+ # # createEnergyLandscapeFigure(r,theta,E,resultPath,parameterName,parameterValue,title_string,True,displayMinimizer)
+ # [kappa_globalmin,alpha_globalmin,kappa_localmin,alpha_localmin,energyDifference,minimizer_sign] = getMinimizers(r,theta,E)
- # # cbar = fig.colorbar(pcm, ax=ax1, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()),ticks=colorbarticks, pad=0.1, orientation="horizontal")
- # # cbar.ax.set_xscale('linear')
- # # cbar.ax.set_xscale('log')
+ inputValues.append(parameterValue)
+ # outputValues_b1.append(B[0])
+ # outputValues_b2.append(B[1])
+ # outputValues_b3.append(B[2])
+ outputValues_q1.append(Q[0][0])
+ outputValues_q2.append(Q[1][1])
+ outputValues_q3.append(Q[2][2])
+ outputValues_q12.append(Q[0][1])
+ outputValues_q23.append(Q[1][2])
+ outputValues_q13.append(Q[0][2])
+ outputValues_b1.append(B[0])
+ outputValues_b2.append(B[1])
+ outputValues_b3.append(B[2])
+ # ---------------------------------------------------------------------------------------------------------
- # # cbar = mpl.colorbar.ColorbarBase()
- # # fig.colorbar(pcm, ax=[ax1], extend='max', ticks=colorbarticks, pad=0.1, orientation="horizontal", cax=axins)
- # # cbar = plt.colorbar(pcm, ax=[ax1], ticks=colorbarticks, pad=0.2, orientation="horizontal", location = 'bottom', fraction=0.1)
- # # cbar.ax.tick_params(labelsize=8)
- # """
- # Set Tick labels
- # x: Angle
- # y: Radius
-
- # """
+ #--- Create Plot ...
+ # Setup Plot style.
+ # plt.style.use("seaborn")
+ # plt.style.use("seaborn-v0_8")
+ # plt.style.use('paperstyle.mplstyle')
+ # Set correct Figure size (width/height) to make the figure fit the text without scaling.
+ textwidth = 6.26894 # textwidth in inch
+ width = textwidth
+ # height = textwidth/1.618 # The golden ratio.
+ height = width/1.618 # The golden ratio.
+ # height = width
- # # plt.rcParams["axes.axisbelow"] = False
+ plt.style.use("seaborn-v0_8-darkgrid")
+ # plt.style.use("seaborn-darkgrid")
+ mpl.rcParams['text.usetex'] = True
+ mpl.rcParams["font.family"] = "serif"
+ mpl.rcParams["font.size"] = "10"
+ mpl.rcParams['xtick.bottom'] = True
+ mpl.rcParams['xtick.major.size'] = 3
+ mpl.rcParams['xtick.minor.size'] = 1.5
+ mpl.rcParams['xtick.major.width'] = 0.75
+ mpl.rcParams['ytick.left'] = True
+ mpl.rcParams['ytick.major.size'] = 3
+ mpl.rcParams['ytick.minor.size'] = 1.5
+ mpl.rcParams['ytick.major.width'] = 0.75
+ mpl.rcParams.update({'font.size': 10})
+ mpl.rcParams['axes.labelpad'] = 3
+ #---------------------
- # anglelabel=["0°","45°", "90°", "135°", "180°","-135°","-90°","-45°"]
- # # anglelabel=["0°","45°", "90°", "135°",r"$\pm180$° ","-135°","-90°","-45°"]
- # ax1.set_xticks(np.array([.0,1/4,2/4,3/4,1,5/4,6/4,7/4])*np.pi)
- # # ax1.set_xticks(np.pi/180. * np.linspace(180, -180, 8, endpoint=False))
- # ax1.set_xticklabels(anglelabel)
- # # ax1.xaxis.grid(True, color='white')
- # ax1.xaxis.grid(True)
- # # ax1.zorder=4
- # # ax1.set_zorder(ax1.get_zorder()+4);
- # # ax1.grid(zorder=10)
- # # ax1.patch.set_visible(False)
+ # Create a figure & axes object
+ # fig, ax1 = plt.subplots(ncols=1,nrows=1, figsize=(width,height),gridspec_kw={'hspace': 0.4}, zorder=1)
+ # fig, ax1 = plt.subplots(ncols=1,nrows=1, figsize=(width,height), zorder=1)
+ # fig, axs = plt.subplots(ncols=2,nrows=3, figsize=(width,height), zorder=1)
- # # We want to grid-axis to be on top of the contour lines to hide confusing contours on the grid-axis.
- # ax1.set_axisbelow(False)
+ if reduced:
+ fig, axs = plt.subplots(ncols=2,nrows=3, figsize=(width,height), constrained_layout=True)
+ else :
+ fig, axs = plt.subplots(ncols=3,nrows=3, figsize=(width,height), constrained_layout=True)
+
+ # title_string = r"$B_1$" + "-" r""+parameterName
+ title_string = ''
- # # tick locations
- # # thetaticks = np.arange(0,360,45)
- # # # set ticklabels location at 1.3 times the axes' radius
- # # ax1.set_thetagrids(thetaticks, frac=1.3)
+ # x_label = r"$\rho$"
+ # x_label = r"$\theta$"
+ # axs.set_xlabel(x_label, labelpad=4)
- # # Adjust pad of xticklabels:
- # ax1.tick_params(pad=0.5)
+ # ax1.set_ylim(-0.1, 1.0)
- # #rotate radius axis labels.
- # # ax1.set_rlabel_position(135)
- # ax1.set_rlabel_position(225)
- # # ax1.set_rlabel_position(235)
- # # ax1.set_rticks([0.5, 1, 1.5, 2]) # Less radial ticks
+ print('plot curvature over parameter : '+ parameterName)
+ print('inputValues:', inputValues)
+ # print('outputValues:', outputValues_q1)
+ # print('outputValues:', outputValues_q2)
+ # print('outputValues:', outputValues_q3)
+ # print('outputValues:', outputValues_q12)
+
+ if reduced:
+ dataSets = [
+ (outputValues_q1, r"$\widehat{Q}^h_{11}$", r"$\widehat{Q}^h_{11}$"),
+ (outputValues_q2, r"$\widehat{Q}^h_{22}$", r"$\widehat{Q}^h_{22}$"),
+ (outputValues_q3, r"$\widehat{Q}^h_{33}$", r"$\widehat{Q}^h_{33}$"),
+ (outputValues_q12, r"$\widehat{Q}^h_{12}$", r"$\widehat{Q}^h_{12}$"),
+ (outputValues_b1, r"$\widehat{B}^h_1$", r"$\widehat{B}^h_1$"),
+ (outputValues_b2, r"$\widehat{B}^h_2$", r"$\widehat{B}^h_2$"),
+ ]
+ else :
+ dataSets = [
+ (outputValues_q1, r"$\widehat{Q}^h_{11}$", r"$\widehat{Q}^h_{11}$"),
+ (outputValues_q2, r"$\widehat{Q}^h_{22}$", r"$\widehat{Q}^h_{22}$"),
+ (outputValues_q3, r"$\widehat{Q}^h_{33}$", r"$\widehat{Q}^h_{33}$"),
+ (outputValues_q12, r"$\widehat{Q}^h_{12}$", r"$\widehat{Q}^h_{12}$"),
+ (outputValues_q23, r"$\widehat{Q}^h_{23}$", r"$\widehat{Q}^h_{23}$"),
+ (outputValues_q13, r"$\widehat{Q}^h_{13}$", r"$\widehat{Q}^h_{13}$"),
+ (outputValues_b1, r"$\widehat{B}^h_1$", r"$\widehat{B}^h_1$"),
+ (outputValues_b2, r"$\widehat{B}^h_2$", r"$\widehat{B}^h_2$"),
+ (outputValues_b3, r"$\widehat{B}^h_3$", r"$\widehat{B}^h_3$")
+ ]
+
+ # Get a color map with distinct colors
+ cmap = get_cmap('tab10') # Using matplotlib's qualitative color map
+
+
+
+ """
+ Plot each function in its own subplot with different colors.
+ axs is a 2x3 grid of subplots (from plt.subplots(2, 3)).
+ '.flat': converts this 2D grid into a 1D iterator, allowing you to loop through subplots sequentially (row-wise order):
+ Subplot order: [axs[0,0], axs[0,1], axs[0,2], axs[1,0], axs[1,1], axs[1,2]]
+ 'zip': pairs elements from two iterables:
+ The first iterable: subplots (axs.flat)
+ The second iterable: dataSet list
+ This creates tuples of matched pairs: (axs[0,0], functions[0]), (axs[0,1], functions[1]), ..., (axs[1,2], functions[5])
+ 'enumerate': Wraps around the zip result to add an index counter i.
+ for each iteration it returns (index, (subplot, function_data))
+ """
+ for i, (ax, (y, title, label)) in enumerate(zip(axs.flat, dataSets)):
+ color = cmap(i / len(dataSets)) # Get unique color from colormap
+ # ax.plot(inputValues, y, label=label, lw=1.5, color=color, marker='o', markersize=5 )
+
+ # ax.set_title(title,fontsize=10)
-
-
- # # ax1.axis.set_major_locator(MultipleLocator(0.5))
- # # ax1.yaxis.set_major_locator(MultipleLocator(0.5))
-
- # radiusTickLength = 0.5
- # ax1.yaxis.set_major_locator(plt.FixedLocator(np.arange(radiusTickLength,curvatureLength,radiusTickLength)))
-
- # # ax1.set_yticks(np.array([1,2,3,4]))
- # # ax1.set_yticklabels(["1","2","3","4"], zorder=20, color="white")
- # # ax1.yxis.set_major_locator
- # # ax1.set_yticks(np.array([1,2]))
- # # ax1.set_yticklabels(["1","2"], zorder=20, color="white")
- # # ax1.set_yticks(np.array([1,1.5]))
- # # ax1.set_yticklabels(["1","1.5"], zorder=20, color="white")
- # # ax1.set_yticks(np.array([1,2,3]))
- # # ax1.set_yticklabels(["1","2","3"], zorder=20, color="white")
- # ax1.yaxis.set_tick_params(color='white', pad = 1.0)
- # # ax1.yaxis.grid(True, color='white', alpha=0.75)
- # ax1.yaxis.grid(True)
-
- # # ax1.spines['polar'].set_visible(True)
- # # Create Minor ticks manually as polar coordinates does not have the option.
- # tick = [ax1.get_rmax(),ax1.get_rmax()*0.97]
- # for t in np.deg2rad(np.arange(0,360,5)):
- # ax1.plot([t,t], tick, lw=0.1, color="k")
-
-
- # #Test:tight Layout
- # # plt.tight_layout()
-
-
- # #TEST: Legend
- # # ax1.legend(loc="lower center")
- # # ax1.legend(loc="lower right",bbox_to_anchor=[1.0, 0.01],frameon=True)
-
- # # ax1.legend(bbox_to_anchor=[0.8, -0.05],loc='center',borderaxespad=0.1,frameon=True)
- # # ax1.legend(bbox_to_anchor=[0.8, -0.1],loc='lower center',borderaxespad=0.1,frameon=True)
- # # ax1.legend(bbox_to_anchor=[0.8, 0.2],borderaxespad=0.1,frameon=True,bbox_transform=fig.transFigure)
- # # ax1.legend(loc='best')
- # legend = ax1.legend(bbox_to_anchor=[0.75, 0.15],loc='lower center',borderaxespad=0.1,frameon=True,bbox_transform=fig.transFigure,handletextpad=0.1)
- # frame = legend.get_frame()
- # # frame.set_color('white')
- # frame.set_edgecolor('black')
-
-
-
- # # axbox = ax1.get_position()
- # # legend = fig.legend([gmin], [Minimizer_string], loc='center',bbox_to_anchor=[axbox.x0+0.5*axbox.width, axbox.y0-0.05], bbox_transform=fig.transFigure)
- # # fig.legend(gmin, r""+Minimizer_string)
- # # labels=line_labels, # The labels for each line
- # # loc="center right", # Position of legend
- # # bbox_to_anchor=[1.35, 0.55],
- # # borderaxespad=0.15, # Small spacing around legend box
- # # frameon=True
- # # # title="Legend Title" # Title for the legend
- # # )
-
- # # Save Figure as png.
- # # fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + '.png', dpi=100)
- # # Save Figure as pdf.
- # fig.set_size_inches(width, height)
- # fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + '.pdf', dpi=500) #dpi only has an effect if "rasterize" option is used.
- # # fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + 'noDPI' + '.pdf')
-
-
- # #Plot Colorbar separately:
-
-
-
- # # fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + 'Legend' + '.pdf',
- # # dpi=300,
- # # bbox_inches='tight')
-
-# --------------------------------------------------------------------------------------------------------------
-
-
-
-
-
-# OLD VERSION:
-# plt.style.use("seaborn")
-# plt.style.use('paperstyle.mplstyle')
-
-
-# # plt.style.use("seaborn")
-
-# # mpl.rcParams['text.usetex'] = True
-# # mpl.rcParams["font.family"] = "serif"
-# # mpl.rcParams["font.size"] = "8"
-# # mpl.rcParams['xtick.bottom'] = True
-# # mpl.rcParams['xtick.major.size'] = 2
-# # mpl.rcParams['xtick.minor.size'] = 1.5
-# # mpl.rcParams['xtick.major.width'] = 0.75
-# # # mpl.rcParams['xtick.labelsize'] = 8
-# # mpl.rcParams['xtick.major.pad'] = 1
-# # mpl.rcParams['ytick.left'] = True
-# # mpl.rcParams['ytick.major.size'] = 2
-# # mpl.rcParams['ytick.minor.size'] = 1.5
-# # mpl.rcParams['ytick.major.width'] = 0.75
-# # mpl.rcParams['ytick.labelsize'] = 8
-# # mpl.rcParams['ytick.major.pad'] = 1
-# # mpl.rcParams['axes.titlesize'] = 8
-# # mpl.rcParams['axes.titlepad'] = 1
-# # # mpl.rcParams['axes.labelsize'] = 8
-# # #Adjust Legend:
-# # mpl.rcParams['legend.frameon'] = True # Use frame for legend
-# # # mpl.rcParams['legend.framealpha'] = 0.5
-# # mpl.rcParams['legend.fontsize'] = 8 # fontsize of legend
-# # #Adjust grid:
-# # # mpl.rcParams.update({"axes.grid" : True}) # Add grid
-# # mpl.rcParams.update({"axes.grid" : False}) # Add grid
-# # mpl.rcParams['axes.labelpad'] = 3
-# # mpl.rcParams['grid.linewidth'] = 0.25
-# # mpl.rcParams['grid.alpha'] = 0.75 # 0.75
-# # mpl.rcParams['grid.linestyle'] = '-'
-# # mpl.rcParams['grid.color'] = 'lightgray'#'black'
-# # mpl.rcParams['text.latex.preamble'] = r'\usepackage{amsfonts}' # Makes Use of \mathbb possible.
-
-
-
-# textwidth = 6.26894 #textwidth in inch
-# # width = textwidth * 0.5
-# width = textwidth * 0.33
-# # width = textwidth
-# height = width/1.618 # The golden ratio.
-
-
-# # Emax=100
-# Emax = E.max()
-# # levs=np.geomspace(1,E.max()*0.5,50)
-# # levs=np.geomspace(1,Emax,50)
-# # levs=np.geomspace(0.1,Emax,100)
-# # print('np.round(E.min(),decimals=2):', np.round(E.min(),decimals=2))
-# # levs=np.geomspace(0.01,Emax,100)
-# levs=np.geomspace(0.01,Emax,200)
-# # print('levs:', levs)
-
-# # levs=np.geomspace(E.min(),E.max(),400) #(np.geomspace: Return numbers spaced evenly on a log scale)
-# # levs=np.geomspace(0,E.max(),400)
-# # levs=np.geomspace(1,Emax,400)
-
-# ## Create Figure
-# # fig, (ax1) = plt.subplots( nrows=1,figsize=(3,3.5),subplot_kw=dict(projection='polar'), gridspec_kw={'hspace': 0.4})
-
-# # fig, ax1 = plt.subplots( figsize=(width,height),subplot_kw=dict(projection='polar'), gridspec_kw={'hspace': 0.4})
-# fig, ax1 = plt.subplots(ncols=1,nrows=1, figsize=(width,height),subplot_kw=dict(projection='polar'))
-# fig.subplots_adjust(left=.1, bottom=.1, right=.95, top=.95) #adjust placement inside figure
-
-# # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.75), cmap='brg', zorder=0)
-# # pcm=ax1.contourf(theta, r, E,100 , norm=colors.PowerNorm(gamma=0.4), cmap='brg', zorder=0)
-# # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=1.0), cmap='brg', zorder=0)
-# # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.5), cmap='brg', zorder=0)
-# pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), cmap='brg', zorder=0)
-# # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.4,vmin=E.min(),vmax=E.max()), cmap='terrain', zorder=0)
-# # pcm=ax1.contourf(theta, r, E, levs, norm=colors.PowerNorm(gamma=0.5,vmin=E.min(),vmax=E.max()), cmap=plt.cm.bone, zorder=0)
-
-
-# ###--- Set Title
-# # ax1.set_title(r"ratio $r=0.12$",pad=20)
-# # ax1.set_title(r""+parameterName + ": " + str(parameterValue),pad=20)
-
-
-
-
-
-
+ ax.set_ylabel('')
-# # Plot global minimizer
-# ax1.plot(alpha_globalmin, abs(kappa_globalmin),
-# markerfacecolor='blue',
-# markeredgecolor='white', # marker edgecolor
-# marker='s', # each marker will be rendered as a circle
-# markersize=6, # marker size
-# markeredgewidth=1, # marker edge width
-# linewidth=0,
-# zorder=3,
-# alpha=1, # Change opacity
-# label = r"$\kappa_{0^\circ}(m^{-1})$")
-
-# if (minimizer == 'positive'):
-# horizontal_annotation_alignment = 'left'
-# # kappa_sign_string = ""
-# else :
-# horizontal_annotation_alignment = 'right'
-# # kappa_sign_string = "-"
-# #--- annotate global minimizer
-
-# ax1.annotate( '('+ str(np.round(np.rad2deg(alpha_globalmin),decimals=1)) + '°' + ',' + str(np.round(kappa_globalmin,decimals=2))+ ')' ,
-# # ax1.annotate( r'$(\theta_{m}, \kappa_m)=$' + '('+ str(np.round(np.rad2deg(alphamin),decimals=1)) + '°' + ',' + str(np.round(kappamin,decimals=1))+ ')' ,
-# # xycoords='polar',
-# # xy = (alpha_globalmin-0.15,abs(kappa_globalmin)+0.25),
-# xy = (alpha_globalmin-0.10,abs(kappa_globalmin)+0.1),
-# # xytext=(0.10, np.round(kappa_globalmin,decimals=2)-0.25),
-# # textcoords='figure fraction',
-# # xytext = (0.5,0.5),
-# # xytext=(alpha_globalmin-0.25,abs(kappa_globalmin)+0.15), #Position of Text-annotation
-# # rotation=np.rad2deg(alpha_globalmin),
-# ha=horizontal_annotation_alignment, va="bottom",
-# color='ivory',
-# zorder=4,
-# fontsize='8')
-
+ # x_labelString = "$\" + ParameterName + "$"
+ # print('x_labelString:', x_labelString)
+ ax.set_xlabel(r"$\alpha$",labelpad=4)
+ if parameterName == "alpha":
+ ax.set_xlabel(r"$\alpha$",labelpad=4)
+ else :
+ ax.set_xlabel(r"$\theta$",labelpad=4)
-# if plot_minimizerInOppositeCurvatureRegion:
-# # Plot local minimizer
-# # ax1.plot(alphamin_neg, kappamin_neg,
-# ax1.plot(alpha_localmin, abs(kappa_localmin), # We need to take abs(kappa) since negative curvatures are still plotted with a positive kappa!
-# markerfacecolor='green',
-# markeredgecolor='white', # marker edgecolor
-# marker='D', # each marker will be rendered as a circle
-# markersize=6, # marker size
-# markeredgewidth=1, # marker edge width
-# linewidth=0, # line width
-# zorder=3,
-# alpha=1)
-
-
-# #--- annotate local minimizer
-# ax1.annotate( '('+ str(np.round(360-np.rad2deg(alpha_localmin),decimals=1)) + '°' + ',' + str(np.round(kappa_localmin,decimals=2))+ ')' ,
-# xy = (alpha_localmin,abs(kappa_localmin)),
-# # xytext=(-1.6, np.round(kappa_localmin,decimals=2)+0.9),
-# # xytext=(-1.6, np.round(kappa_localmin,decimals=2)),
-# xytext=(alpha_localmin,abs(kappa_localmin)),
-# color='ivory',
-# # zorder=5,
-# fontsize='8')
-# # print('alphamin: ' , alphamin )
-# # print('kappamin: ' , kappamin )
-# # print('Global Minimizer (alphamin, kappamin):' , '('+ str(np.round(np.rad2deg(alphamin),decimals=1)) + ',' + str(np.round(kappamin,decimals=1))+ ')' )
-# print('Global Minimizer (alphamin, kappamin):' , '('+ str(np.round(np.rad2deg(alpha_globalmin),decimals=1)) + ',' + str(np.round(abs(kappa_globalmin),decimals=2))+ ')' )
-# # print('Local Minimizer (alphamin, kappamin):' , '('+ str(np.round(360-np.rad2deg(alphamin_neg),decimals=1)) + ',' + str(np.round(-kappamin_neg,decimals=1))+ ')' )
-
+ #TEST (Spline interpolation)
+ # Create cubic spline interpolation
+ interp_function = CubicSpline(inputValues, y)
+
+ #create "continuous" values
+ x_continuous = np.linspace(min(inputValues), max(inputValues), 100)
+ y_interp = interp_function(x_continuous)
+
+
+ ax.scatter(inputValues, y, color=color, s=35, zorder=5, edgecolor='black')
+ ax.plot(x_continuous, y_interp, color=color, lw=2, label=label)
+
+ ax.legend()
+
+ # Set square aspect ratio
+ # ax.set_aspect(1/4)
+
+ # Set axis limits with padding
+ # ax.set_xlim(min(inputValues)-0.01, max(inputValues)+0.01)
+ ax.set_xlim(min(inputValues)-0.05, max(inputValues)+0.05)
+ y_min, y_max = np.nanmin(y), np.nanmax(y)
+ # x_min, x_max = np.nanmin(y), np.nanmax(y)
+ ax.set_ylim(y_min - 0.1*(y_max - y_min),
+ y_max + 0.1*(y_max - y_min))
+
+
+
+
+ # l1 = ax1.plot(inputValues,outputValues_q1 ,
+ # label=r"$\widehat{Q}^h_{11}$" ,
+ # markerfacecolor='orange',
+ # markeredgecolor='gray', # marker edgecolor
+ # marker='o', # each marker will be rendered as a circle
+ # markersize=5, # marker size
+ # markeredgewidth=1.0, # marker edge width)
+ # linewidth=1.5
+ # )
+ # l2 = ax1.plot(inputValues,outputValues_q2 ,
+ # label=r"$\widehat{Q}^h_{22}$",
+ # # markerfacecolor='orange',
+ # markeredgecolor='gray', # marker edgecolor
+ # marker='s', # each marker will be rendered as a circle
+ # markersize=5, # marker size
+ # markeredgewidth=1.0, # marker edge width)
+ # linewidth=1.5
+ # )
+ # l3 = ax1.plot(inputValues,outputValues_q3 ,
+ # label=r"$\widehat{Q}^h_{33}$",
+ # # markerfacecolor='orange',
+ # markeredgecolor='gray', # marker edgecolor
+ # marker='^', # each marker will be rendered as a circle
+ # markersize=5, # marker size
+ # markeredgewidth=1.0, # marker edge width)
+ # linewidth=1.5
+ # )
+
+ # l3 = ax1.plot(inputValues,outputValues_q12 ,
+ # label=r"$\widehat{Q}^h_{12}$",
+ # # markerfacecolor='orange',
+ # markeredgecolor='gray', # marker edgecolor
+ # marker='^', # each marker will be rendered as a circle
+ # markersize=5, # marker size
+ # markeredgewidth=1.0, # marker edge width)
+ # linewidth=1.5
+ # )
-# print('Local Minimizer opposite curvature (alphamin, kappamin):' , '('+ str(np.round(360-np.rad2deg(alpha_localmin),decimals=1)) + ',' + str(np.round(abs(kappa_localmin),decimals=2))+ ')' )
-# # ax1.annotate(alphamin, (alphamin,kappamin))
+ # legend = ax1.legend()
-# # rotate radius axis labels.
-# # ax1.set_rlabel_position(135)
+ # legend = ax1.legend(bbox_to_anchor=[0.75, 0.15],loc='lower center',borderaxespad=0.1,frameon=True,bbox_transform=fig.transFigure,handletextpad=0.1)
+ # frame = legend.get_frame()
+ # frame.set_edgecolor('black')
-# colorbarticks=np.geomspace(0.00001,Emax,10)
+ ## PUT LEGEND ON BOTTOM /TOP
+ # legend = fig.legend([l1, l2, l3], # The line objects
+ # # labels=line_labels, # The labels for each line
+ # loc="lower left", # Position of legend
+ # # bbox_to_anchor=[1.0, 0.55],
+ # # bbox_to_anchor=[0.1, 1.0], # TOP
+ # # bbox_to_anchor=[0.1, -0.15], # BOTTOM
+ # bbox_to_anchor=[0.125, -0.15], # BOTTOM
+ # borderaxespad=0.15, # Small spacing around legend box
+ # frameon=True,
+ # ncol = 4
+ # # title="Legend Title" # Title for the legend
+ # )
-
-# cbar = plt.colorbar(pcm, ax=[ax1], extend='max', ticks=colorbarticks, pad=0.1, orientation="horizontal")
-# cbar.ax.tick_params(labelsize=8)
-
-# anglelabel=["0°","45°", "90°", "135°","180°","135°","90°","45°"]
-# ax1.set_xticks(np.array([.0,1/4,2/4,3/4,1,5/4,6/4,7/4])*np.pi)
-# ax1.set_xticklabels(anglelabel)
-# ax1.xaxis.grid(True, color='white')
-# # ax1.set_yticks(np.array([1,2,3,4]))
-# # ax1.set_yticklabels(["1","2","3","4"], zorder=20, color="white")
-# ax1.set_yticks(np.array([1,2,3]))
-# ax1.set_yticklabels(["1","2","3"], zorder=20, color="white")
-# ax1.yaxis.set_tick_params(color='white')
-# ax1.yaxis.grid(True, color='white', alpha=0.75)
-# # Save Figure as pdf.
-# fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + '.png', dpi=100)
-
-# fig.set_size_inches(width, height)
-# fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + '.pdf')
+ # frame = legend.get_frame()
+ # # frame.set_color('white')
+ # frame.set_edgecolor('gray')
+ #Test:tight Layout
+ # plt.tight_layout()
+ # plt.tight_layout(pad=3, w_pad=4, h_pad=4)
+ fig.set_size_inches(width, height)
+ fig.savefig(resultPath_parent + '/ElasticModuliDependence_' + '_' + parameterName + '.pdf', dpi=1500) #dpi on
+#----------------------------------------------------------------------------------------------------------------------
\ No newline at end of file
diff --git a/testsuite/microstructure_PythonAddons.py b/testsuite/microstructure_PythonAddons.py
index 1e1e993bc4e034707ec3e5bf45f844c91707eac3..ee512da09551728af31ac07600c137ff3a3f7227 100644
--- a/testsuite/microstructure_PythonAddons.py
+++ b/testsuite/microstructure_PythonAddons.py
@@ -8,11 +8,219 @@ import matplotlib.pyplot as plt
import matplotlib.colors as colors
from matplotlib import cm
from matplotlib.colors import ListedColormap, LinearSegmentedColormap
-
+import shutil
from scipy.optimize import minimize_scalar
import importlib
+import subprocess
#---------------------------------------------------------------------------
+
+def SolveMacroProblem(executable,parameterFile,gridLevels,parameterArray,conforming_DiscreteJacobian,resultPath,instrumentedPath,new_ParameterPath,pythonPath,INSTRUMENTED):
+ print('Solve Macro Problem.')
+
+ """
+ Run for each parameter in 'parameterArray' unless none is given
+ - Then run once.
+ """
+ if len(parameterArray)>0:
+ print("Compute for a given parameterArray:", parameterArray)
+
+ # ------ Loops through Parameters -----------
+ for i in range(0, len(parameterArray)) if len(parameterArray)>0 else [1]:
+ for v in range(0,len(parameterArray[i][1])) if len(parameterArray)>0 else [1]:
+
+
+ if len(parameterArray)>0:
+ print("------------------")
+ print("New Parameter iteration")
+ print("------------------")
+ # print('[i,v]:', [i,v])
+ print('parameterName:' , parameterArray[i][0])
+ print('parameterValue: ', parameterArray[i][1][v])
+ parameterName = parameterArray[i][0]
+ parameterValue = parameterArray[i][1][v]
+
+ """"
+ remove decimal points from the parameterArray entries.
+ As the decimal points cause problems with the output name of dune-vtk.
+ """
+ parameterValueString = (str(parameterArray[i][1][v])).replace('.', '')
+ # print('parameterValueString',parameterValueString)
+
+ """
+ UPDATE PARAMETERS
+ """
+ # ModifyInputParameters(original_ParameterPath,new_ParameterPath,parameterName,parameterValue)
+ ModifyParameterFile(os.path.join(new_ParameterPath, parameterFile), parameterName , parameterValue)
+ print('Parameter modification done.')
+
+ baseName = parameterFile + "_" + parameterArray[i][0]+ "_" + parameterValueString
+
+ else :
+ print("------------------")
+ print("Empty parameterArray - run once for default parameter set.")
+ print("------------------")
+ parameterName = ''
+ parameterValue = ''
+ parameterValueString = ''
+ baseName = parameterFile
+
+ processList = []
+ for macroGridLevel in gridLevels:
+
+ if len(parameterArray)>0:
+ LOGFILE = resultPath + "/" + parameterFile + "_macroGridLevel" + str(macroGridLevel) + "_" + parameterName + "_" + str(parameterValue) + ".log"
+ else:
+ LOGFILE = resultPath + "/" + parameterFile + "_macroGridLevel" + str(macroGridLevel) + ".log"
+ print('LOGFILE:', LOGFILE)
+ print('executable:', executable)
+ print('parameterFile:', parameterFile)
+ print('resultPath:', resultPath)
+
+ # start_time = time.time()
+ p = subprocess.Popen(executable + " " + new_ParameterPath + " " + parameterFile
+ + " -macroGridLevel " + str(macroGridLevel)
+ + " -resultPath " + str(resultPath)
+ + " -baseName " + str(baseName)
+ + " -instrumentedPath " + str(instrumentedPath)
+ + " -conforming_DiscreteJacobian " + str(conforming_DiscreteJacobian)
+ + " -instrumented " + str(INSTRUMENTED)
+ # + " -" + parameterName + " " + str(parameterValue)
+ + " | tee " + LOGFILE, shell=True)
+
+ p.wait() # wait
+ # print("--- %s seconds ---" % (time.time() - start_time))
+ print('------FINISHED PROGRAM on macroGridLevel:' + str(macroGridLevel))
+ processList.append(p)
+ # Wait for all simulation subprocesses before proceeding to the error measurement step
+ exit_codes = [p.wait() for p in processList]
+# ---------------------------------------------------------------------------------------------------------
+
+def SolveMicroProblem(executable,parameterFile,gridLevels,parameterArray,resultPathBase,new_ParameterPath,pythonPath):
+ print('Solve Micro Problem.')
+
+ """
+ Run for each parameter in 'parameterArray' unless none is given
+ - Then run once.
+ """
+ if len(parameterArray)>0:
+ print("Compute for a given parameterArray:", parameterArray)
+
+ # ------ Loops through Parameters -----------
+ for i in range(0, len(parameterArray)) if len(parameterArray)>0 else [1]:
+ for v in range(0,len(parameterArray[i][1])) if len(parameterArray)>0 else [1]:
+
+
+ if len(parameterArray)>0:
+ print("------------------")
+ print("New Parameter iteration")
+ print("------------------")
+ # print('[i,v]:', [i,v])
+ print('parameterName:' , parameterArray[i][0])
+ print('parameterValue: ', parameterArray[i][1][v])
+ parameterName = parameterArray[i][0]
+ parameterValue = parameterArray[i][1][v]
+
+ """"
+ remove decimal points from the parameterArray entries.
+ As the decimal points cause problems with the output name of dune-vtk.
+ """
+ parameterValueString = (str(parameterArray[i][1][v])).replace('.', '')
+ # print('parameterValueString',parameterValueString)
+
+ """
+ UPDATE PARAMETERS
+ """
+ # ModifyInputParameters(original_ParameterPath,new_ParameterPath,parameterName,parameterValue)
+ ModifyParameterFile(os.path.join(new_ParameterPath, parameterFile), parameterName , parameterValue)
+ print('Parameter modification done.')
+
+ baseName = parameterFile + "_" + parameterArray[i][0]+ "_" + parameterValueString
+
+ resultPath_parent = resultPathBase + "/" + parameterName
+ resultPath = resultPath_parent + "/value_" + str(np.round(parameterValue,3)) # round parameter value to three decimals.
+
+ # Create output directories if non existent
+ os.makedirs(resultPath_parent , exist_ok=True)
+ os.makedirs(resultPath, exist_ok=True)
+
+ else :
+ print("------------------")
+ print("Empty parameterArray - run once for default parameter set.")
+ print("------------------")
+ parameterName = ''
+ parameterValue = ''
+ parameterValueString = ''
+ baseName = parameterFile
+ resultPath = resultPathBase
+
+ processList = []
+ for microGridLevel in gridLevels:
+
+ if len(parameterArray)>0:
+ LOGFILE = resultPath + "/" + parameterFile + "_microGridLevel" + str(microGridLevel) + "_" + parameterName + "_" + str(parameterValue) + ".log"
+ else:
+ LOGFILE = resultPath + "/" + parameterFile + "_microGridLevel" + str(microGridLevel) + ".log"
+ print('LOGFILE:', LOGFILE)
+ print('executable:', executable)
+ print('parameterFile:', parameterFile)
+ print('resultPath:', resultPath)
+
+ # start_time = time.time()
+ p = subprocess.Popen(executable + " " + new_ParameterPath + " " + parameterFile
+ + " -microGridLevel " + str(microGridLevel)
+ + " -resultPath " + str(resultPath)
+ + " -baseName " + str(baseName)
+ # + " -" + parameterName + " " + str(parameterValue)
+ + " | tee " + LOGFILE, shell=True)
+
+ p.wait() # wait
+ # print("--- %s seconds ---" % (time.time() - start_time))
+ print('------FINISHED PROGRAM on microGridLevel:' + str(microGridLevel))
+ processList.append(p)
+ # Wait for all simulation subprocesses before proceeding to the error measurement step
+ exit_codes = [p.wait() for p in processList]
+# ---------------------------------------------------------------------------------------------------------
+
+
+# """
+# This method creates a copy of a given (.py) parameter-file
+# and overwrites the parameter values given by (parameterName,parameterValue)
+# """
+# def ModifyInputParameters(inputParameterFilePath,outputParameterFilePath, parameterName, parameterValue):
+# print(' --- Copy python parameter-file to new location. --- ')
+# # Create writable output directory if it doesn't exist
+# os.makedirs(outputParameterFilePath, exist_ok=True)
+
+# # Copy original file to writable location
+# shutil.copy2(inputParameterFilePath, outputParameterFilePath + '.py')
+
+# # Update parameters.
+# ModifyParameterFile(outputParameterFilePath, parameterName , parameterValue)
+
+
+"""
+ This method creates a copy of a given (.py) parameter-file
+ * Can be used to modify a copy of the parameter-file on
+ * Read-only file systems.
+"""
+def CreateParameterCopy(inputParameterFilePath,outputParameterFilePath,parameterFile):
+ print(' --- Copy python parameter-file to new location. --- ')
+ # Create writable output directory if it doesn't exist
+ # ParentPath = os.path.abspath(os.path.join(outputParameterFilePath, os.pardir))
+ # os.makedirs(ParentPath, exist_ok=True)
+ os.makedirs(outputParameterFilePath, exist_ok=True)
+
+ # Copy original file to writable location
+ shutil.copy2(inputParameterFilePath, os.path.join(outputParameterFilePath, parameterFile) + '.py')
+
+ print('Copied Parameter-File to location:', os.path.join(outputParameterFilePath, parameterFile) + '.py')
+
+
+
+
+
+
def xytokappaalpha(x,y):
"""
Convert 2-dimensional cartesian coordinates [x,y]
@@ -31,7 +239,7 @@ def ReadEffectiveQuantities(QFilePath, BFilePath):
(default): '../outputs/Qmatrix.txt' , '../outputs/Bmatrix.txt'
Note: These correspond to the coefficients of Qhom,Beff
- so Qhom is a 3x3-matrix while Beff is a Vector os size 3
+ so Qhom is a 3x3-matrix while Beff is a Vector of size 3
"""
# -- Read Matrix Qhom
X = []
@@ -55,14 +263,14 @@ def ReadEffectiveQuantities(QFilePath, BFilePath):
-def SetParameterMaterialFunction(parameterFile, parameterName, parameterValue):
+def ModifyParameterFile(parameterFile, parameterName, parameterValue):
""""
Overwrite parameter 'parameterName' in the 'parameterFile'
with new value: 'parameterValue.
"""
with open(parameterFile +'.py', 'r') as file:
filedata = file.read()
- filedata = re.sub('(?m)'+str(parameterName)+'\s?=.*',str(parameterName)+' = '+str(parameterValue),filedata)
+ filedata = re.sub('(?m)'+str(parameterName)+r'\s?=.*',str(parameterName)+' = '+str(parameterValue),filedata)
f = open(parameterFile +'.py','w')
f.write(filedata)
f.close()
@@ -218,6 +426,7 @@ def createEnergyLandscapeFigure(r,theta,E,resultPath , parameterName='',paramete
# Set correct Figure size (width/height) to make the figure fit the text without scaling.
textwidth = 6.26894 # textwidth in inch
width = textwidth * 0.5
+ # width = textwidth * 0.33
height = textwidth/1.618 # The golden ratio.
#Get Minimzers from sampled energy values.
@@ -282,7 +491,7 @@ def createEnergyLandscapeFigure(r,theta,E,resultPath , parameterName='',paramete
"""
if plotContourLines:
contour_levs = np.linspace(0.0001,energyDifference*1.0,6) # contour only from zero (Minimizer) to energyDifference between global/local Minimizer.
- contour_levs = np.linspace(0.0001,1,3) # contour only from zero (Minimizer) to energyDifference between global/local Minimizer.
+ contour_levs = np.linspace(0.0001,1,6) # contour only from zero (Minimizer) to energyDifference between global/local Minimizer.
# contour_levs = np.linspace(0.0001,energyDifference*1.0,2) # contour only from zero (Minimizer) to energyDifference between global/local Minimizer.
print('contour_levs:', contour_levs)
contour_levs = np.sort(contour_levs, axis=None)
@@ -397,5 +606,5 @@ def createEnergyLandscapeFigure(r,theta,E,resultPath , parameterName='',paramete
# fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + '.png', dpi=100)
# Save Figure as pdf.
fig.set_size_inches(width, height)
- fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(parameterValue) + '.pdf', dpi=1500) #dpi on
+ fig.savefig(resultPath + '/energy_landscape_'+ parameterName + '_' +str(np.round(parameterValue,3)) + '.pdf', dpi=1500) #dpi on
return
\ No newline at end of file
diff --git a/testsuite/runMacroExperiments.sh b/testsuite/runMacroExperiments.sh
new file mode 100755
index 0000000000000000000000000000000000000000..0e6bef51c3c2a8e53899bd1805a34f1c4a2085e0
--- /dev/null
+++ b/testsuite/runMacroExperiments.sh
@@ -0,0 +1,17 @@
+echo "run macro experiments :"
+
+# echo "first arg: $1"
+# echo "second arg: $2"
+# a=$(($1))
+# b=$(($2))
+
+# echo "a: $a"
+# echo "b: $b"
+# echo "$(seq $1 $2)"
+
+for i in $(seq $1 $2);
+ do python3 macro-problem-testsuite.py 0 $i;
+
+done
+ # do echo "i: $i"; done
+
diff --git a/testsuite/runMicroExperiments.sh b/testsuite/runMicroExperiments.sh
new file mode 100755
index 0000000000000000000000000000000000000000..ef32a28cfd6fad738f5e3cf79d6eb0b04179cc5b
--- /dev/null
+++ b/testsuite/runMicroExperiments.sh
@@ -0,0 +1,17 @@
+echo "run micro experiments :"
+
+# echo "first arg: $1"
+# echo "second arg: $2"
+# a=$(($1))
+# b=$(($2))
+
+# echo "a: $a"
+# echo "b: $b"
+# echo "sequence: $(seq $1 $2)"
+
+for i in $(seq $1 $2);
+ do python3 microstructure-testsuite.py 0 $i;
+
+done
+ # do echo "i: $i"; done
+