Merge branch 'feature/data_transfer_dof_admin' into 'develop'

Add a Manager class for GridTransfer with automatic registration of DOFVectors

See merge request !52

src/amdis/CMakeLists.txt

@@ -31,6 +31,7 @@ install(FILES
     GridFunctionOperator.hpp
     GridFunctions.hpp
     GridTransfer.hpp
+    GridTransferManager.hpp
     Initfile.hpp
     InitfileParser.hpp
     LinearAlgebra.hpp

src/amdis/GridTransfer.hpp

 #pragma once
 
-#include <vector>
+#include <list>
 
 #include <amdis/linear_algebra/DOFVectorInterface.hpp>
 
+#include <amdis/Output.hpp>
+
 namespace AMDiS
 {
+  class GridTransferInterface
+  {
+  public:
+    virtual ~GridTransferInterface() = default;
+
+    virtual void attach(DOFVectorInterface*) = 0;
+    virtual void detach(DOFVectorInterface*) = 0;
+    virtual bool preAdapt() = 0;
+    virtual bool adapt() = 0;
+    virtual void postAdapt() = 0;
+
+  };
+
+
   template <class Grid>
   class GridTransfer
+      : public GridTransferInterface
   {
     using Self = GridTransfer;
 
   public:
-    GridTransfer(Grid& grid)
-      : grid_(&grid)
-    {}
+    void bind(Grid& grid)
+    {
+      grid_ = &grid;
+    }
+
+    void unbind()
+    {
+      grid_ = nullptr;
+    }
 
     /// Attach a data container to the grid transfer, that gets interpolated during grid change
-    void attach(DOFVectorInterface* vec)
+    virtual void attach(DOFVectorInterface* vec) override
     {
       data_.push_back(vec);
     }
 
+    virtual void detach(DOFVectorInterface* vec) override
+    {
+      auto it = std::find(data_.begin(), data_.end(), vec);
+      if (it != data_.end())
+        data_.erase(it);
+      else
+        warning("DOFVector to detach not found");
+    }
+
     /// Prepare the grid and the data for the adaption
-    bool preAdapt()
+    virtual bool preAdapt() override
     {
+      assert(grid_ != nullptr);
       mightCoarsen_ = grid_->preAdapt(); // any element might be coarsened in adapt()
-      for (auto* vec : data_)
+      for (auto* vec : this->data_)
         vec->preAdapt(mightCoarsen_);
       return mightCoarsen_;
     }
 
     /// do the grid adaption
-    bool adapt()
+    virtual bool adapt() override
     {
+      assert(grid_ != nullptr);
       refined_ = grid_->adapt(); // returns true if a least one entity was refined
       return refined_;
     }
 
     // Perform data adaption to the new grid
-    void postAdapt()
+    virtual void postAdapt() override
     {
+      assert(grid_ != nullptr);
       if (mightCoarsen_ || refined_) {
-        for (auto* vec : data_)
+        for (auto* vec : this->data_)
           vec->postAdapt(refined_);
       }
       grid_->postAdapt();
     }
 
-  protected:
-    Grid* grid_;
-    std::vector<DOFVectorInterface*> data_;
+  private:
+    Grid* grid_ = nullptr;
+    std::list<DOFVectorInterface*> data_;
     bool mightCoarsen_ = false;
     bool refined_ = false;
   };

src/amdis/GridTransferManager.hpp

+#pragma once
+
+#include <cstdint>
+#include <map>
+#include <memory>
+
+#include <amdis/GridTransfer.hpp>
+#include <amdis/utility/ConcurrentCache.hpp>
+
+namespace AMDiS
+{
+  /// Static administration class for automatic handling of DOFVectors during grid adaption
+  class GridTransferManager
+  {
+    template <class T1, class T2>
+    friend class DOFVectorBase;
+
+    using Self = GridTransferManager;
+    using Key = std::uintptr_t;
+    using Data = std::unique_ptr<GridTransferInterface>;
+
+  private:
+    // Constructors. Since this is a static class you cannot call any constructor.
+    GridTransferManager() = delete;
+
+  public:
+    /**
+     * \brief Adapts the grid according to previously set marks and performs data transfer on
+     *        all DOFVectors associated to the given grid.
+     *
+     * This function retrieves the grid's stored GridTransfer and calls its adaptation methods.
+     * During this process the grid will change according to previously set grid element markings.
+     * All DOFVectors associated to the given grid will be interpolated to the new grid according to
+     * their DataTransfer member object.
+     *
+     * Takes a grid as argument. Marking of the grid needs to be performed prior to calling this.
+     * Returns true if the grid changed during adaptation.
+     **/
+    template <class Grid>
+    static bool adapt(Grid& grid)
+    {
+      auto gridTransfer = GridTransferManager::gridTransfer(grid);
+      bool adapted = gridTransfer.preAdapt();
+      adapted |= gridTransfer.adapt();
+      gridTransfer.postAdapt();
+      return adapted;
+    }
+
+    /// Returns the GridTransfer corresponding to a Grid, to be used during the adaptation cycle
+    template <class Grid>
+    static GridTransfer<Grid>& gridTransfer(Grid& grid)
+    {
+      GridTransfer<Grid>* gridTransfer
+        = dynamic_cast<GridTransfer<Grid>*>(Self::gridTransferInterface(grid));
+      gridTransfer->bind(grid);
+      return *gridTransfer;
+    }
+
+  private:
+    // DOFVector registration methods. They are called automaticly by the DOFVectors.
+    template <class Vec>
+    static void attach(Vec& vec)
+    {
+      auto const& grid = vec.basis().gridView().grid();
+      Self::gridTransferInterface(grid)->attach(&vec);
+    }
+
+    template <class Vec>
+    static void detach(Vec& vec)
+    {
+      auto const& grid = vec.basis().gridView().grid();
+      Self::gridTransferInterface(grid)->detach(&vec);
+    }
+
+    // Returns the GridTransferInterface class,
+    //   used for attaching and detaching DOFVectors to a GridTransfer
+    template <class Grid>
+    static GridTransferInterface* gridTransferInterface(Grid const &grid)
+    {
+      Key key = Key(&grid);
+      auto& gridTransferInterfaceUniquePtr = GridTransferCache::get(key, [&](Key const&)
+      {
+        return std::make_unique<GridTransfer<Grid>>();
+      });
+      return gridTransferInterfaceUniquePtr.get();
+    }
+
+  private:
+    // Associate to each Grid (represented as address) a GridTransfer
+    using GridTransferCache = ConcurrentCache< Key, Data, StaticLockedPolicy, std::map<Key, Data> >;
+  };
+
+} // end namespace AMDiS

src/amdis/ProblemStat.hpp

@@ -18,7 +18,6 @@
 #include <amdis/DirichletBC.hpp>
 //#include <amdis/Estimator.hpp>
 #include <amdis/Flag.hpp>
-#include <amdis/GridTransfer.hpp>
 #include <amdis/Initfile.hpp>
 #include <amdis/LinearAlgebra.hpp>
 #include <amdis/LinearSolvers.hpp>
@@ -347,12 +346,6 @@ namespace AMDiS
       setGrid(Dune::stackobject_to_shared_ptr(grid));
     }
 
-    void addAdaptionData(DOFVectorInterface* vec)
-    {
-      assert(bool(gridTransfer_));
-      gridTransfer_->attach(vec);
-    }
-
     void addMarker(std::shared_ptr<Marker<Grid>> const& marker)
     {
       marker_.push_back(marker);
@@ -384,7 +377,6 @@ namespace AMDiS
     void adoptGrid(std::shared_ptr<Grid> const& grid)
     {
       grid_ = grid;
-      gridTransfer_ = std::make_shared<GridTransfer<Grid>>(*grid_);
       Parameters::get(name_ + "->mesh", gridName_);
     }
 
@@ -421,9 +413,6 @@ namespace AMDiS
     /// Grid of this problem.
     std::shared_ptr<Grid> grid_;
 
-    /// Handling the adaption of the grid
-    std::shared_ptr<GridTransfer<Grid>> gridTransfer_;
-
     /// Name of the grid
     std::string gridName_ = "mesh";
 

src/amdis/ProblemStat.inc.hpp

@@ -10,6 +10,7 @@
 #include <amdis/AdaptInfo.hpp>
 #include <amdis/FileWriter.hpp>
 #include <amdis/GridFunctionOperator.hpp>
+#include <amdis/GridTransferManager.hpp>
 #include <amdis/LocalAssembler.hpp>
 #include <amdis/common/Loops.hpp>
 
@@ -37,7 +38,6 @@ void ProblemStat<Traits>::initialize(
         adoptFlag.isSet(INIT_SYSTEM) ||
         adoptFlag.isSet(INIT_FE_SPACE))) {
       grid_ = adoptProblem->grid_;
-      gridTransfer_ = adoptProblem->gridTransfer_;
     }
   }
 
@@ -123,7 +123,6 @@ void ProblemStat<Traits>::createGrid()
 {
   Parameters::get(name_ + "->mesh", gridName_);
   grid_ = MeshCreator<Grid>::create(gridName_);
-  gridTransfer_ = std::make_shared<GridTransfer<Grid>>(*grid_);
 
   msg("Create grid:");
   msg("#elements = {}"   , grid_->size(0));
@@ -175,10 +174,6 @@ void ProblemStat<Traits>::createMatricesAndVectors()
   solution_ = std::make_shared<SystemVector>(*globalBasis_, INTERPOLATE);
   rhs_ = std::make_shared<SystemVector>(*globalBasis_, NO_OPERATION);
 
-  assert(bool(gridTransfer_));
-  gridTransfer_->attach(solution_.get());
-  gridTransfer_->attach(rhs_.get());
-
   auto localView = globalBasis_->localView();
   AMDiS::forEachNode_(localView.tree(), [&,this](auto const& node, auto treePath)
   {
@@ -333,11 +328,8 @@ adaptGrid(AdaptInfo& adaptInfo)
 {
   Dune::Timer t;
 
-  bool adapted = gridTransfer_->preAdapt();
-  adapted |= gridTransfer_->adapt(); // NOTE: |= does not short-circuit and works with bools as ||=
-  if (adapted)
-    globalBasis_->update(gridView());
-  gridTransfer_->postAdapt();
+  bool adapted = GridTransferManager::adapt(*grid_);
+  globalBasis_->update(gridView());
 
   msg("adaptGrid needed {} seconds", t.elapsed());
   return adapted ? MESH_ADAPTED : Flag(0);

src/amdis/linear_algebra/DOFVectorBase.hpp

 #pragma once
 
 #include <cmath>
+#include <utility>
 
 #include <dune/functions/functionspacebases/sizeinfo.hh>
 
 #include <amdis/DataTransfer.hpp>
+#include <amdis/GridTransferManager.hpp>
 #include <amdis/LocalAssemblerList.hpp>
 #include <amdis/common/Math.hpp>
 #include <amdis/common/ScalarTypes.hpp>
@@ -52,18 +54,47 @@ namespace AMDiS
       , dataTransfer_(DataTransferFactory::create(op, basis))
     {
       compress();
+      GridTransferManager::attach(*this);
       operators_.init(basis);
     }
 
-    DOFVectorBase(Self const&) = default;
-    DOFVectorBase(Self&&) = default;
+    /// Copy constructor
+    DOFVectorBase(Self const& that)
+      : basis_(that.basis_)
+      , backend_(that.backend_)
+      , elementVector_(that.elementVector_)
+      , operators_(that.operators_)
+      , dataTransfer_(that.dataTransfer_)
+    {
+      GridTransferManager::attach(*this);
+    }
+
+    /// Move constructor
+    DOFVectorBase(Self&& that)
+      : basis_(std::move(that.basis_))
+      , backend_(std::move(that.backend_))
+      , elementVector_(std::move(that.elementVector_))
+      , operators_(std::move(that.operators_))
+      , dataTransfer_(std::move(that.dataTransfer_))
+    {
+      GridTransferManager::attach(*this);
+    }
+
+    /// Destructor
+    virtual ~DOFVectorBase() override
+    {
+      GridTransferManager::detach(*this);
+    }
 
     /// Copy assignment operator
     Self& operator=(Self const& that)
     {
+      GridTransferManager::detach(*this);
       basis_ = that.basis_;
       backend_.resize(that.size());
       backend_ = that.backend_;
+      dataTransfer_ = that.dataTransfer_;
+      GridTransferManager::attach(*this);
       return *this;
     }
 

test/DOFVectorTest.cpp

@@ -7,6 +7,7 @@
 #include <dune/functions/functionspacebases/powerbasis.hh>
 #include <dune/functions/functionspacebases/lagrangebasis.hh>
 
+#include <amdis/GridTransferManager.hpp>
 #include <amdis/LinearAlgebra.hpp>
 
 #include "Tests.hpp"
@@ -41,26 +42,41 @@ int main(int argc, char** argv)
   Dune::FieldVector<double, 2> L; L = 1.0;
   auto s = Dune::filledArray<2>(1);
   Dune::YaspGrid<2> grid(L, s);
+  auto const& gridView = grid.leafGridView();
 
   // create basis
-  auto basis = makeBasis(grid.leafGridView(),
+  auto basis = makeBasis(gridView,
     composite(power<2>(lagrange<2>(), flatInterleaved()), lagrange<1>(), flatLexicographic()));
-
   using Basis = decltype(basis);
-  DOFVector<Basis> vec1(basis);
-  test_dofvector(basis, vec1);
 
-  DOFVector<Basis, float> vec2(basis);
-  test_dofvector(basis, vec2);
+  {
+    DOFVector<Basis> vec1(basis);
+    test_dofvector(basis, vec1);
+
+    DOFVector<Basis, float> vec2(basis);
+    test_dofvector(basis, vec2);
 
-  auto vec3 = makeDOFVector(basis);
-  test_dofvector(basis, vec3);
+    auto vec3 = makeDOFVector(basis);
+    test_dofvector(basis, vec3);
 
-  auto vec4 = makeDOFVector<float>(basis);
-  test_dofvector(basis, vec4);
+    auto vec4 = makeDOFVector<float>(basis);
+    test_dofvector(basis, vec4);
 
 #if DUNE_HAVE_CXX_CLASS_TEMPLATE_ARGUMENT_DEDUCTION
-  DOFVector vec5(basis);
-  test_dofvector(basis, vec5);
+    DOFVector vec5(basis);
+    test_dofvector(basis, vec5);
 #endif
-}
\ No newline at end of file
+  }
+
+  // test GridTransferManager registration
+  {
+    DOFVector<Basis> vec1(basis);
+    test_dofvector(basis, vec1);
+    for (auto const& e : elements(gridView))
+      grid.mark(1, e);
+    GridTransferManager::adapt(grid);
+    AMDIS_TEST_EQ(vec1.size(), basis.dimension());
+  }
+
+  report_errors();
+}